Query psy1331
Match_columns 157
No_of_seqs 200 out of 1178
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 16:15:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 8.5E-40 2.9E-44 274.1 13.6 150 1-157 155-304 (403)
2 3q8g_A CRAL-TRIO domain-contai 99.9 4.8E-28 1.7E-32 198.0 6.6 116 1-121 191-316 (320)
3 1aua_A Phosphatidylinositol tr 99.9 2.7E-27 9.1E-32 190.7 8.8 94 1-99 176-269 (296)
4 1r5l_A Alpha-TTP, protein (alp 99.9 1.5E-25 5E-30 176.9 6.8 92 1-97 144-235 (262)
5 3hx3_A Retinaldehyde-binding p 99.9 6.2E-26 2.1E-30 185.0 4.1 104 1-109 203-306 (316)
6 3pg7_A Neurofibromin; SEC lipi 97.7 1.1E-05 3.9E-10 63.6 2.6 78 2-87 66-144 (256)
7 3peg_A Neurofibromin; SEC14 do 96.9 0.00016 5.3E-09 58.1 -0.0 79 1-87 84-163 (290)
8 3sbx_A Putative uncharacterize 47.4 41 0.0014 24.7 5.6 61 16-83 123-188 (189)
9 3qua_A Putative uncharacterize 35.1 73 0.0025 23.5 5.3 62 15-83 131-197 (199)
10 2oo3_A Protein involved in cat 27.6 33 0.0011 26.9 2.4 26 34-59 238-263 (283)
11 2xsk_A CSGC; chaperone; 1.70A 25.7 45 0.0015 22.4 2.4 21 134-154 68-88 (110)
12 2vqe_B 30S ribosomal protein S 24.4 62 0.0021 25.0 3.4 70 26-98 30-105 (256)
13 2a33_A Hypothetical protein; s 21.1 1.6E+02 0.0056 21.7 5.1 60 16-82 124-188 (215)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8.5e-40 Score=274.08 Aligned_cols=150 Identities=34% Similarity=0.690 Sum_probs=139.7
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
|+|+||+|+ |+|.++++++++.++|++||||++++||||+|++|.++|++++|||+++|++||+|++ ++|.++|.+
T Consensus 155 ~~g~sl~~~-~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~---~~~~~~L~~ 230 (403)
T 1olm_A 155 CEGLGLKHL-WKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG---ANWKEVLLK 230 (403)
T ss_dssp CTTCCGGGG-CHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC---TTHHHHHTT
T ss_pred CCCCCHHHH-hhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEC---hhHHHHHHh
Confidence 689999999 8988999999999999999999999999999999999999999999999999999998 578899999
Q ss_pred cCCCCCCCccCCCCCCCCCCCcccccccCCCCCCCcccccCCCCCCCccCcceEEEEeCCCcEEEEEEecCCCcccC
Q psy1331 81 QMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYMKKPIDKSLEENYTQACVKKGEKLSLDFIAPQEGYFLK 157 (157)
Q Consensus 81 ~i~~~~LP~~yGG~~~~~~gd~~c~~~i~~gg~vP~s~y~~~~~~~~~~~~~~~~~V~~g~~~~i~~~v~~~g~~l~ 157 (157)
+||+++||++|||++++++|||.|.+.|++||+||++||..+....++. ++++|+||++++|+++|.++||+|+
T Consensus 231 ~I~~~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~---~~~~V~~g~~~~v~~~v~~~g~~l~ 304 (403)
T 1olm_A 231 HISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYE---HSVQISRGSSHQVEYEILFPGCVLR 304 (403)
T ss_dssp TSCGGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCS---EEEEECTTCEEEEEEEECSTTCEEE
T ss_pred hcChhhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccccc---eEEEEcCCCEEEEEEEEcCCCCEEE
Confidence 9999999999999999999999999999999999999999876432222 4699999999999999999999884
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.94 E-value=4.8e-28 Score=198.04 Aligned_cols=116 Identities=22% Similarity=0.386 Sum_probs=106.2
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
|+|+|++|+ ++. ++++++++.++|++||||++++||||+|++|.++|+++++||+++|++||+|++ +++.++|.+
T Consensus 191 ~~g~sl~~~-~~~-~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~---~~~~~~L~~ 265 (320)
T 3q8g_A 191 LKGISLSNA-YHV-LSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILG---SSYKKELLK 265 (320)
T ss_dssp CTTCCHHHH-HHT-HHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECC---TTHHHHHHH
T ss_pred CCCCCHHHH-HHH-HHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeC---CCcHHHHHh
Confidence 689999999 653 688999999999999999999999999999999999999999999999999998 568899999
Q ss_pred cCCCCCCCccCCCCCCCCCCCccc----------ccccCCCCCCCcccccC
Q psy1331 81 QMEEDMWPASMGGAGRDPDGNPRC----------LTKIPQIGKVPKSMYMK 121 (157)
Q Consensus 81 ~i~~~~LP~~yGG~~~~~~gd~~c----------~~~i~~gg~vP~s~y~~ 121 (157)
+||+++||++|||++++++.+..| +..++++|.+|+++|++
T Consensus 266 ~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~~~~~~~~~~~~~ 316 (320)
T 3q8g_A 266 QIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGPEGEIPNIFGKF 316 (320)
T ss_dssp HSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCCTTCCCCCTTGGG
T ss_pred hCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcCCCCccCcccccC
Confidence 999999999999999986655557 56889999999999987
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.94 E-value=2.7e-27 Score=190.68 Aligned_cols=94 Identities=28% Similarity=0.467 Sum_probs=88.3
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
|+|+||+|+ ++. +++++.++.++|++||||++++||||+|++|.++|++++|||+++|++||+|++ +++.++|.+
T Consensus 176 ~~g~s~~~~-~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~---~~~~~~L~~ 250 (296)
T 1aua_A 176 LKGISISSA-YSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILG---SSYQKELLK 250 (296)
T ss_dssp CTTCCHHHH-HHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECC---SCCHHHHTT
T ss_pred CCCCCHHHH-HHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeC---cccHHHHHh
Confidence 679999999 543 688999999999999999999999999999999999999999999999999998 568899999
Q ss_pred cCCCCCCCccCCCCCCCCC
Q psy1331 81 QMEEDMWPASMGGAGRDPD 99 (157)
Q Consensus 81 ~i~~~~LP~~yGG~~~~~~ 99 (157)
+||+++||++|||++++++
T Consensus 251 ~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 251 QIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp TSCSSSSBGGGTSCBCCCG
T ss_pred hCCHhhCcHHhCCCCCCCC
Confidence 9999999999999998876
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.92 E-value=1.5e-25 Score=176.91 Aligned_cols=92 Identities=18% Similarity=0.427 Sum_probs=86.7
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
|+|+||+|+ +++.++.++.++.++|++||||++++||||+|++|.++|++++|||+++|++||+|++ +++.++|.+
T Consensus 144 ~~g~s~~~~-~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~---~~~~~~L~~ 219 (262)
T 1r5l_A 144 LEGWQFSHA-FQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG---NNYKQSLLQ 219 (262)
T ss_dssp CTTCCHHHH-HHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC---SSCHHHHHH
T ss_pred CCCCCHHHH-hccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC---CCcHHHHHH
Confidence 689999999 7777889999999999999999999999999999999999999999999999999998 567899999
Q ss_pred cCCCCCCCccCCCCCCC
Q psy1331 81 QMEEDMWPASMGGAGRD 97 (157)
Q Consensus 81 ~i~~~~LP~~yGG~~~~ 97 (157)
+|| ++||++|||+++.
T Consensus 220 ~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 220 HFP-DILPLEYGGEEFS 235 (262)
T ss_dssp HST-TTSCGGGTCSSCC
T ss_pred Hhh-hhCcHhhCCCCCC
Confidence 999 9999999999753
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.92 E-value=6.2e-26 Score=185.05 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=94.4
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
|+|+||+|+ ++...+.+++++.++|++||+|++++||||+|++|.++|++++|||+++|++||+|++ +++ ++|.+
T Consensus 203 ~~g~sl~~~-~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~---~~~-~~L~~ 277 (316)
T 3hx3_A 203 FKGFTMQQA-ASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG---DDL-SGFYQ 277 (316)
T ss_dssp CTTCCHHHH-HHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE---TCC-HHHHH
T ss_pred CCCCCHHHh-ccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC---CCH-HHHHh
Confidence 689999998 6666788999999999999999999999999999999999999999999999999998 444 68999
Q ss_pred cCCCCCCCccCCCCCCCCCCCcccccccC
Q psy1331 81 QMEEDMWPASMGGAGRDPDGNPRCLTKIP 109 (157)
Q Consensus 81 ~i~~~~LP~~yGG~~~~~~gd~~c~~~i~ 109 (157)
+||+++||++|||++++.+|+..|...++
T Consensus 278 ~I~~~~LP~eyGG~~~~~d~~~~~~~l~~ 306 (316)
T 3hx3_A 278 EIDENILPSDFGGTLPKYDGKAVAEQLFG 306 (316)
T ss_dssp HSCGGGSBGGGTSSBCCCCHHHHHHHHC-
T ss_pred hCCHhhCcHhhCCCCCCcChhHHHHHHcC
Confidence 99999999999999998888877766543
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=97.74 E-value=1.1e-05 Score=63.60 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=64.4
Q ss_pred CCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHH-HHhhcChhhhceeEEccCCCCCcHHHHHc
Q psy1331 2 SDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRV-VKKFLHEYTISKIHLYRAEPAKWRPILLE 80 (157)
Q Consensus 2 ~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~-vk~fl~~~t~~Ki~~~~~~~~~~~~~L~~ 80 (157)
+|++..+. |..+.++.+.+++...|...++++||+|++++|...|.. .++|.+.+..+|++++++ .++|.+
T Consensus 66 T~~~~~n~---p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s-----l~eL~~ 137 (256)
T 3pg7_A 66 THTGPSNR---FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAE 137 (256)
T ss_dssp TTCCGGGC---CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS-----TTGGGG
T ss_pred CCCCcccC---CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC-----HHHHHh
Confidence 45555544 667889999999999999999999999999999977665 466776788899999983 789999
Q ss_pred cCCCCCC
Q psy1331 81 QMEEDMW 87 (157)
Q Consensus 81 ~i~~~~L 87 (157)
+|+.++|
T Consensus 138 ~i~~~~L 144 (256)
T 3pg7_A 138 HIEHEQQ 144 (256)
T ss_dssp TSCGGGC
T ss_pred hcCHHHc
Confidence 9987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=96.87 E-value=0.00016 Score=58.10 Aligned_cols=79 Identities=6% Similarity=-0.000 Sum_probs=55.9
Q ss_pred CCCCccCCcccchhHHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHH-HHHHhhcChhhhceeEEccCCCCCcHHHHH
Q psy1331 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAW-RVVKKFLHEYTISKIHLYRAEPAKWRPILL 79 (157)
Q Consensus 1 l~g~s~~~~~~~~~~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~-~~vk~fl~~~t~~Ki~~~~~~~~~~~~~L~ 79 (157)
++|++..+- |..+.++.+.+++...|...++++|++|++.+|...+ ...++|.+.+..+|+.++++ ...|.
T Consensus 84 ~T~~~~~n~---p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~-----~~~L~ 155 (290)
T 3peg_A 84 LTHTGPSNR---FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLA 155 (290)
T ss_dssp CTTCCGGGC---CCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS-----SCC--
T ss_pred cCCCCccCC---ChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC-----HHHHH
Confidence 345665443 5678999999999999999999999999999998755 46688888889999999873 34588
Q ss_pred ccCCCCCC
Q psy1331 80 EQMEEDMW 87 (157)
Q Consensus 80 ~~i~~~~L 87 (157)
++++.+++
T Consensus 156 ~~i~~~~~ 163 (290)
T 3peg_A 156 EHIEHEQQ 163 (290)
T ss_dssp --------
T ss_pred hhCCHHHh
Confidence 88877754
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=47.42 E-value=41 Score=24.69 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHH-----hhcChhhhceeEEccCCCCCcHHHHHccCC
Q psy1331 16 ELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVK-----KFLHEYTISKIHLYRAEPAKWRPILLEQME 83 (157)
Q Consensus 16 ~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk-----~fl~~~t~~Ki~~~~~~~~~~~~~L~~~i~ 83 (157)
+-+.+++...|-.+- -+-|+++|..-++.-+..+++ -|++++.++.+.+..+ .+++.+++.
T Consensus 123 dElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~ee~~~~l~ 188 (189)
T 3sbx_A 123 DELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN-----LDDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS-----HHHHHHHHC
T ss_pred HHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC-----HHHHHHHhc
Confidence 344444544454432 378999999777777776554 4888889999999973 677776654
No 9
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=35.12 E-value=73 Score=23.51 Aligned_cols=62 Identities=6% Similarity=-0.015 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHHHh-----hcChhhhceeEEccCCCCCcHHHHHccCC
Q psy1331 15 AELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKK-----FLHEYTISKIHLYRAEPAKWRPILLEQME 83 (157)
Q Consensus 15 ~~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~vk~-----fl~~~t~~Ki~~~~~~~~~~~~~L~~~i~ 83 (157)
++-+..++...|-.+- -+-|+++|..-+..-+++++.. |++++.++.+.+..+ .+++.+.+.
T Consensus 131 ldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~~e~~~~l~ 197 (199)
T 3qua_A 131 LEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVVDN-----VEAALEACA 197 (199)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEESS-----HHHHHHHHS
T ss_pred HHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEeCC-----HHHHHHHHh
Confidence 3445555555555542 3689999997788888887654 677778888999873 677776654
No 10
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=27.60 E-value=33 Score=26.94 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.4
Q ss_pred CcEEEEeCChHHHHHHHHHHhhcChh
Q psy1331 34 KNCYVINAPKVFTLAWRVVKKFLHEY 59 (157)
Q Consensus 34 ~~i~iiNaP~~~~~~~~~vk~fl~~~ 59 (157)
..++|||+||-+.-...-+.|+|.+.
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHH
Confidence 46899999999998888887777653
No 11
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=25.68 E-value=45 Score=22.36 Aligned_cols=21 Identities=0% Similarity=0.071 Sum_probs=17.0
Q ss_pred EEEEeCCCcEEEEEEecCCCc
Q psy1331 134 QACVKKGEKLSLDFIAPQEGY 154 (157)
Q Consensus 134 ~~~V~~g~~~~i~~~v~~~g~ 154 (157)
+++|.+|.+..|-+.|.+.++
T Consensus 68 slnI~~~D~vkIiVTVSDG~s 88 (110)
T 2xsk_A 68 SLNISPDDRVKIVVTVSDGQS 88 (110)
T ss_dssp EEECCTTCEEEEEEEEECSSS
T ss_pred EEEecCCCcEEEEEEEeCCCe
Confidence 788888888888888886654
No 12
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=24.37 E-value=62 Score=25.01 Aligned_cols=70 Identities=16% Similarity=0.152 Sum_probs=39.9
Q ss_pred HhhcccccCcEEEEeCChHHHHHHHHHHhhcCh--hhhceeEEccCCCCCcHHHHH---ccCCCCCCCc-cCCCCCCCC
Q psy1331 26 EANYPEILKNCYVINAPKVFTLAWRVVKKFLHE--YTISKIHLYRAEPAKWRPILL---EQMEEDMWPA-SMGGAGRDP 98 (157)
Q Consensus 26 ~~~yPe~l~~i~iiNaP~~~~~~~~~vk~fl~~--~t~~Ki~~~~~~~~~~~~~L~---~~i~~~~LP~-~yGG~~~~~ 98 (157)
.-.|-+| ..+||||.-.-...+-...+ |+.. +-..+|-|+++. ....+.+. +..+.-.+-. ..||++++.
T Consensus 30 ~YIyg~R-ngihIIdL~kT~~~L~~A~~-~i~~~a~~gg~iLfVgTk-~~a~~~V~~~A~~~g~~yv~~RWlgG~LTN~ 105 (256)
T 2vqe_B 30 RYIYAER-NGIHIIDLQKTMEELERTFR-FIEDLAMRGGTILFVGTK-KQAQDIVRMEAERAGMPYVNQRWLGGMLTNF 105 (256)
T ss_dssp TTEEEEE-TTEEEECHHHHHHHHHHHHH-HHHHHHTTTCCEEEECCS-SSSTTTTTTTTTSSSCCEECSCCCTTTTTTH
T ss_pred cceeccc-CCeEEEeHHHHHHHHHHHHH-HHHHHHhCCCEEEEEeCC-HHHHHHHHHHHHHhCCeeecCeeCCCcccCH
Confidence 3457778 89999997765554433222 2222 346789999963 22223332 3333334433 459998863
No 13
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=21.08 E-value=1.6e+02 Score=21.72 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhcccccCcEEEEeCChHHHHHHHHH-----HhhcChhhhceeEEccCCCCCcHHHHHccC
Q psy1331 16 ELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVV-----KKFLHEYTISKIHLYRAEPAKWRPILLEQM 82 (157)
Q Consensus 16 ~~~~~~~~~~~~~yPe~l~~i~iiNaP~~~~~~~~~v-----k~fl~~~t~~Ki~~~~~~~~~~~~~L~~~i 82 (157)
+-+.+++...|-.+ .-+-|+++|..-++.-+++++ .-|++++.++.+.+..+ .+++.+.+
T Consensus 124 dElfE~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~-----~ee~~~~l 188 (215)
T 2a33_A 124 EELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT-----AKELVKKL 188 (215)
T ss_dssp HHHHHHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESS-----HHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCC-----HHHHHHHH
Confidence 44455555555543 247799999876667777765 34778888999988873 55555554
Done!