RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1331
(157 letters)
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 80.4 bits (199), Expect = 5e-20
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
M S+ P + +L++ + NYPE L ++NAP +F + W+++K FL T
Sbjct: 63 MKGLSLSNMDKWPI-SFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPFLDPKT 121
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 93
KIH ++ LL+ + + P GG
Sbjct: 122 REKIHFHK---NSNLEELLKYIPPEQLPKEYGG 151
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 61.9 bits (151), Expect = 8e-13
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ SM + +L++ + +YPE L Y+IN P F + W+++K FL E T
Sbjct: 70 LKGLSMSNPDLSVLRK----ILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLDEKT 125
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 93
KI + LLE ++++ P +GG
Sbjct: 126 REKIRFVG---NDSKEELLEYIDKEQLPEELGG 155
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 62.0 bits (151), Expect = 8e-13
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ S+ P L+ +L++ + NYPE LK Y+IN P F + W++VK FL E T
Sbjct: 70 LKGLSLSHLL--PDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKT 127
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGG 93
KI + LL+ ++++ P GG
Sbjct: 128 RKKIVFLG----SDKEELLKYIDKEQLPEEYGG 156
>gnl|CDD|176552 cd08610, GDPD_GDE6, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE6 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE6 (also known as
glycerophosphodiester phosphodiesterase
domain-containing protein 4 (GDPD4)) and their metazoan
homologs. Mammalian GDE6 is a transmembrane protein
predominantly expressed in the spermatocytes of testis.
Although the specific physiological function of
mammalian GDE6 has not been elucidated, its different
pattern of tissue distribution suggests it might play a
critical role in the completion of meiosis during male
germ cell differentiation.
Length = 316
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 32 ILKNCYVINAPKVFTLAWRVVKKFLHEYTISKIHL 66
I N YVIN P +F+LAW +H T + IHL
Sbjct: 246 IHTNVYVINEPWLFSLAW---CSGIHSVTTNNIHL 277
>gnl|CDD|237946 PRK15337, PRK15337, type III secretion system protein InvA;
Provisional.
Length = 686
Score = 28.4 bits (64), Expect = 1.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 21 MLQMYEANYPEILKNCY 37
+L E YP++LK Y
Sbjct: 506 LLDQLEKKYPDLLKEVY 522
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 27.6 bits (62), Expect = 2.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
Query: 32 ILKNCYVIN----APKVFTLAWRVVK 53
I+ NC VIN +VF A+RV+K
Sbjct: 150 IISNC-VINLSPDKERVFKEAFRVLK 174
>gnl|CDD|179585 PRK03511, minC, septum formation inhibitor; Reviewed.
Length = 228
Score = 26.9 bits (60), Expect = 4.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 59 YTISKIHLYRAEPAKWRPILLEQMEE 84
+T+S +HL+ AEP R L +++ +
Sbjct: 13 FTLSVVHLHDAEPEVIRQALEDKIAQ 38
>gnl|CDD|176516 cd08574, GDPD_GDE_2_3_6, Glycerophosphodiester phosphodiesterase
domain of mammalian glycerophosphodiester
phosphodiesterase GDE2, GDE3, GDE6-like proteins. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in mammalian
glycerophosphodiester phosphodiesterase
domain-containing protein subtype 5 (GDE2), subtype 2
(GDE3), subtype 1 (GDE6), and their eukaryotic homologs.
Mammalian GDE2, GDE3, and GDE6 show very high sequence
similarity to each other and have been classified into
the same family. Although they are all transmembrane
proteins, based on different pattern of tissue
distribution, these enzymes might display diverse
cellular functions. Mammalian GDE2 is primarily
expressed in mature neurons. It selectively hydrolyzes
glycerophosphocholine (GPC) and mainly functions in a
complex with an antioxidant scavenger peroxiredoxin1
(Prdx1) to control motor neuron differentiation in the
spinal cord. Mammalian GDE3 is specifically expressed
in bone tissues and spleen. It selectively hydrolyzes
extracellular glycerophosphoinositol (GPI) to generate
inositol 1-phosphate (Ins1P) and glycerol and functions
as an inducer of osteoblast differentiation. Mammalian
GDE6 is predominantly expressed in the spermatocytes of
testis, and its specific physiological function has not
been elucidated yet.
Length = 252
Score = 26.1 bits (58), Expect = 7.6
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 35 NCYVINAPKVFTLAW 49
N YV+N P +++L W
Sbjct: 227 NLYVVNEPWLYSLLW 241
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type. This
family consists of glycogen (or starch) synthases that
use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
(EC 2.4.1.11) as in animals, as the glucose donor. This
enzyme is found in bacteria and plants. Whether the name
given is glycogen synthase or starch synthase depends on
context, and therefore on substrate [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 473
Score = 26.1 bits (58), Expect = 9.0
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 59 YTISK-IHLYRAEPAKWRPILLEQMEEDM-WPAS 90
+S+ + LYR +P+ W + M +D W S
Sbjct: 429 AALSRALRLYRQDPSLWEALQKNAMSQDFSWDKS 462
>gnl|CDD|234640 PRK00110, PRK00110, hypothetical protein; Validated.
Length = 245
Score = 25.8 bits (58), Expect = 9.3
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 89 ASMGGAGRDPDGNPR 103
A +GG DP+GNPR
Sbjct: 36 AKLGGG--DPEGNPR 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,131,343
Number of extensions: 715427
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 517
Number of HSP's successfully gapped: 13
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)