RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1331
(157 letters)
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 130 bits (327), Expect = 5e-37
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+K W+PA E L M+E NYPE LK +V+ APK+F +A+ ++K FL E T
Sbjct: 155 CEGLGLKH-LWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT 213
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYM 120
KI + A W+ +LL+ + D P GG DPDGNP+C +KI G +P+ Y+
Sbjct: 214 RKKIMVL---GANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYV 270
Query: 121 KKPIDKSLEENYTQACVKKGEKLSLDFIAPQEGYFLK 157
+ + ++ + +G +++ G L+
Sbjct: 271 RDQVK---QQYEHSVQISRGSSHQVEYEILFPGCVLR 304
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 106 bits (266), Expect = 8e-29
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ S+ V + + YPE + Y+INAP F+ A+R+ K FL T
Sbjct: 176 LKGISISSA--YSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 233
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTK----------IPQ 110
+SKI + + ++ LL+Q+ + P GG + I
Sbjct: 234 VSKIFIL---GSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIGP 290
Query: 111 IGKVPK 116
G+ P+
Sbjct: 291 EGEAPE 296
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 106 bits (266), Expect = 1e-28
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ S+ A+ + + + + YPE + Y+I++P F+ +++VK FL T
Sbjct: 191 LKGISLSN-AYHVL-SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVT 248
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYM 120
+SKI + + ++ LL+Q+ + P GG + N + + P+ +
Sbjct: 249 VSKIFIL---GSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIGP 305
Query: 121 KKPIDKSL 128
+ I
Sbjct: 306 EGEIPNIF 313
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 88.6 bits (220), Expect = 5e-22
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
F+M+Q A + M+ M + ++P K + I+ P FT + VVK FL
Sbjct: 203 FKGFTMQQ-AASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL 261
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRC 104
+ ++ ++ + + ++++E++ P+ GG DG
Sbjct: 262 LERVFVHGDDLSG----FYQEIDENILPSDFGGTLPKYDGKAVA 301
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 79.3 bits (196), Expect = 7e-19
Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ + A++ + + + ++P ++ ++IN P +F + ++K FL E
Sbjct: 144 LEGWQFSH-AFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI 202
Query: 61 ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPD 99
+IH++ + L Q D+ P GG +
Sbjct: 203 KERIHMHGNNYKQ----SLLQHFPDILPLEYGGEEFSME 237
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.11
Identities = 14/98 (14%), Positives = 33/98 (33%), Gaps = 21/98 (21%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKF---LH 57
+ + Y + ++ ++ E P ++ Y+ +++ K L
Sbjct: 83 VEEVLRINYKF------LMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 58 EYTISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAG 95
Y + L PAK +L++ + G+G
Sbjct: 136 PYLKLRQALLELRPAKN--VLID---------GVLGSG 162
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding
protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A*
3p7z_A* 2d4q_A*
Length = 256
Score = 27.2 bits (60), Expect = 2.1
Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Query: 1 MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
+ D + + R + + ++ + + Y+ N + ++ L
Sbjct: 62 VVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLK 121
Query: 61 IS-KIHLYRAEPAKWRPILLEQME 83
S ++ I EQ +
Sbjct: 122 GSKRLVFIDCPGKLAEHIEHEQQK 145
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 3.2
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 61/153 (39%)
Query: 38 VINAPKVFTLA------WRVVKKFLHEYTI------SKI-HLYRAEPAKWR--PI----- 77
++N K ++ + + L + S+I R R P+
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLT-LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 78 --LL----EQMEEDMWPASMGGAGRD---P-----DG-NPRCLTK------IPQIGKVPK 116
LL + + +D+ ++ +D P DG + R L+ + I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI----- 483
Query: 117 SMYMKKPID--KSLEENYTQACVKKGEKLSLDF 147
++ P+ + + T LDF
Sbjct: 484 ---IRLPVKWETTTQFKATHI---------LDF 504
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 8.1
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 8/27 (29%)
Query: 52 VKKFLHEYTISKIHLYRAEPAKWRPIL 78
+KK + + + LY + A P L
Sbjct: 22 LKKL--Q---ASLKLYADDSA---PAL 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.429
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,476,455
Number of extensions: 136422
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 15
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.0 bits)