RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1331
         (157 letters)



>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 95.9 bits (238), Expect = 4e-26
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 4/124 (3%)

Query: 1   MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
                +K + W+PA E     L M+E NYPE LK  +V+ APK+F +A+ ++K FL E T
Sbjct: 80  CEGLGLK-HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT 138

Query: 61  ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYM 120
             KI +  A    W+ +LL+ +  D  P   GG   DPDGNP+C +KI   G +P+  Y+
Sbjct: 139 RKKIMVLGA---NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYV 195

Query: 121 KKPI 124
           +  +
Sbjct: 196 RDQV 199


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 15/126 (11%)

Query: 1   MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
           +   S+           V     + +  YPE +   Y+INAP  F+ A+R+ K FL   T
Sbjct: 83  LKGISISS--AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT 140

Query: 61  ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLT------KIPQI--- 111
           +SKI +     + ++  LL+Q+  +  P   GG     +             + P+    
Sbjct: 141 VSKIFIL---GSSYQKELLKQIPAENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIGP 197

Query: 112 -GKVPK 116
            G+ P+
Sbjct: 198 EGEAPE 203


>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 298

 Score = 32.5 bits (73), Expect = 0.014
 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 6/161 (3%)

Query: 1   MSDFSMKQYAWRPAAELVLCMLQMYEANYPEILKNCYVINAPKVFTLAWRVVKKFLHEYT 60
           + D+      +       L + +    N P  +   + +   K    A  ++     +Y 
Sbjct: 65  IWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYG 124

Query: 61  ISKIHLYRAEPAKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVPKSMYM 120
                    +        L   +  +   +    GR     P  + K   +     + Y 
Sbjct: 125 DKVPENLEEQAISLVGEDL--YQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYF 182

Query: 121 KKPIDKSLEENYTQACVK----KGEKLSLDFIAPQEGYFLK 157
                      YT+   K       KL +DF+  ++    K
Sbjct: 183 SDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKDSLASK 223


>d1zela1 a.4.5.83 (A:1-82) Hypothetical protein Rv2827c
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 82

 Score = 24.3 bits (52), Expect = 3.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 72  AKWRPILLEQMEEDMWPASMGGAGRDPDGNPRCLTKIPQIGKVP 115
           A+ RP+++ + E+     +  G GRDPD   R L +I  + ++P
Sbjct: 23  ARDRPVVVTK-EDLTQRLTEAGCGRDPDSAIRELRRIGWLVQLP 65


>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
           botulinum, serotype B [TaxId: 1491]}
          Length = 533

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 95  GRDPDGNPRCLTKIPQIGKVPKSMYMKKPID 125
           G++   N +   +I +       + M K + 
Sbjct: 410 GQNKAINKQAYEEISKEHLAVYKIQMCKSVK 440


>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 208

 Score = 24.0 bits (51), Expect = 9.9
 Identities = 1/23 (4%), Positives = 10/23 (43%)

Query: 53  KKFLHEYTISKIHLYRAEPAKWR 75
           + ++    +  +  ++ +   W+
Sbjct: 186 QGYITNDGLHLLKKFKEDQVNWQ 208


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 626,967
Number of extensions: 27916
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 10
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.8 bits)