BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13311
(873 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ETU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
R2939s
Length = 210
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP LVPYD LT K
Sbjct: 125 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 184
Query: 664 EKKKDRERSQEFLKYLQYQGYKLRS 688
EK +DRE++QE LK+LQ GY + S
Sbjct: 185 EKARDREKAQELLKFLQMNGYAVTS 209
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGG---------SVHPQLV 655
N+ P P++ N+ + ++ + + AE +H+ WA K + + HP L
Sbjct: 3 ANFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNE 696
PY ++K+K+ R +E LK + + + AR G+ E
Sbjct: 63 PYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEK-AREGEEE 102
>pdb|3RQR|A Chain A, Crystal Structure Of The Ryr Domain Of The Rabbit
Ryanodine Receptor
Length = 227
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP LVPYD LT K
Sbjct: 142 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 201
Query: 664 EKKKDRERSQEFLKYLQYQGY 684
EK +DRE++QE LK+LQ GY
Sbjct: 202 EKARDREKAQELLKFLQMNGY 222
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 603 GPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGG---------SVHPQ 653
G GN+ P P++ N+ + ++ + + AE +H+ WA K + + HP
Sbjct: 18 GSGNFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPM 77
Query: 654 LVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNE 696
L PY ++K+K+ R +E LK + + + AR G+ E
Sbjct: 78 LRPYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEK-AREGEEE 119
>pdb|4ESU|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
S2776m
Length = 210
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP LVPYD LT K
Sbjct: 125 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 184
Query: 664 EKKKDRERSQEFLKYLQYQGY 684
EK +DRE++QE LK+LQ GY
Sbjct: 185 EKARDREKAQELLKFLQMNGY 205
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEES---GGSV------HPQLV 655
N+ P P++ N+ + ++ + + AE +H+ WA K + + G +V HP L
Sbjct: 3 ANFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNE 696
PY ++K+K+ R +E LK + + + AR G+ E
Sbjct: 63 PYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEK-AREGEEE 102
>pdb|4ETT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 Mutant
E2764k
Length = 210
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP LVPYD LT K
Sbjct: 125 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 184
Query: 664 EKKKDRERSQEFLKYLQYQGY 684
EK +DRE++QE LK+LQ GY
Sbjct: 185 EKARDREKAQELLKFLQMNGY 205
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGG---------SVHPQLV 655
N+ P P++ N+ + ++ + + AE +H WA K + + HP L
Sbjct: 3 ANFDPRPVETLNVIIPEKLDSFINKFAEYTHKKWAFDKIQNNWSYGENVDEELKTHPMLR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNE 696
PY ++K+K+ R +E LK + + + AR G+ E
Sbjct: 63 PYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEK-AREGEEE 102
>pdb|4ERT|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1
(2734-2940)
Length = 210
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 61/81 (75%), Gaps = 3/81 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYDLLTDK 663
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP LVPYD LT K
Sbjct: 125 YNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPLLVPYDTLTAK 184
Query: 664 EKKKDRERSQEFLKYLQYQGY 684
EK +DRE++QE LK+LQ GY
Sbjct: 185 EKARDREKAQELLKFLQMNGY 205
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGG---------SVHPQLV 655
N+ P P++ N+ + ++ + + AE +H+ WA K + + HP L
Sbjct: 3 ANFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENVDEELKTHPMLR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNE 696
PY ++K+K+ R +E LK + + + AR G+ E
Sbjct: 63 PYKTFSEKDKEIYRWPIKESLKAMIAWEWTIEK-AREGEEE 102
>pdb|4ERV|A Chain A, Crystal Structure Of Human Ryanodine Receptor 3
(2597-2800)
Length = 207
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
Query: 605 GN-YHPNPIDMTNLTLSREMQNMAERLAENSHDIWA---KKKKEESGGSVHPQLVPYDLL 660
GN Y P P+D++N+ LSRE+Q M E +AEN H+IWA K + E GG HP LVPYD L
Sbjct: 120 GNSYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWAKKKKLELESKGGGSHPLLVPYDTL 179
Query: 661 TDKEKKKDRERSQEFLKYLQYQG 683
T EK KDRE++Q+ K+LQ G
Sbjct: 180 TAAEKFKDREKAQDLFKFLQVNG 202
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKE---------ESGGSVHPQLV 655
N+ P PI+ N +L +++ + + AE+SHD WA K + + HP +
Sbjct: 3 ANFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKL------RSIARRGKNESLRA 700
P+ LT+KEK+ R ++E LK + G+ + ++ ++ +NE LR+
Sbjct: 63 PFKTLTEKEKEIYRWPARESLKTMLAVGWTVERTKEGEALVQQRENEKLRS 113
>pdb|4ETV|A Chain A, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
pdb|4ETV|B Chain B, Crystal Structure Of Mouse Ryanodine Receptor 2
(2699-2904)
Length = 209
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/81 (56%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Query: 607 YHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEES---GGSVHPQLVPYDLLTDK 663
Y P ID +N+TLSR++ AE AEN H+IWAKKKK E GG HP LVPYD LT
Sbjct: 125 YSPRAIDXSNVTLSRDLHAXAEXXAENYHNIWAKKKKLELESKGGGNHPLLVPYDTLTAA 184
Query: 664 EKKKDRERSQEFLKYLQYQGY 684
EK KDRE++Q+ K+LQ GY
Sbjct: 185 EKAKDREKAQDIFKFLQISGY 205
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 10/106 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKE---------ESGGSVHPQLV 655
N++P P+D +N+T+ +++ + AE+SHD W+ K + P
Sbjct: 3 ANFNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSXDKLANGWIYGEIYSDSSKIQPLXK 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRAR 701
PY LL++KEK+ R +E LK G+++ R G + +L R
Sbjct: 63 PYKLLSEKEKEIYRWPIKESLKTXLAWGWRIER-TREGDSXALYNR 107
>pdb|3NRT|A Chain A, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|B Chain B, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|C Chain C, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|D Chain D, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|E Chain E, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
pdb|3NRT|F Chain F, The Crystal Strucutre Of Putative Ryanodine Receptor From
Bacteroides Thetaiotaomicron Vpi-5482
Length = 103
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 9/90 (10%)
Query: 606 NYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGG---------SVHPQLVP 656
+Y P P D++ + L + ++ER+AEN H++WAK + +E HP LVP
Sbjct: 10 DYIPEPXDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDIHKKHPCLVP 69
Query: 657 YDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
YD L ++EK+ DR + +K ++ G+++
Sbjct: 70 YDELPEEEKEYDRNTAXNTIKXVKKLGFRI 99
>pdb|4B4T|T Chain T, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 274
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 253 VRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWK 312
+ ++DS +++++ + + N ++S ++ LS I++LL +E E+ ER W
Sbjct: 171 ISEFDSFTDILKSAIRDEIAKNT---ELSYDFLPLSNIKALLFFNNEKETEKFALERNWP 227
Query: 313 LVNNHTFFQH 322
+VN+ +F +
Sbjct: 228 IVNSKVYFNN 237
>pdb|1WPB|A Chain A, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|B Chain B, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|C Chain C, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|D Chain D, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|E Chain E, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|F Chain F, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|G Chain G, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|H Chain H, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|I Chain I, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|J Chain J, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|K Chain K, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|L Chain L, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|M Chain M, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|N Chain N, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|O Chain O, Structure Of Escherichia Coli Yfbu Gene Product
pdb|1WPB|P Chain P, Structure Of Escherichia Coli Yfbu Gene Product
Length = 172
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 449 AIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENA 500
A+++S LQ + E+ LG+D RYL ++RF V V G +A
Sbjct: 79 ALHVSWSNLQDQQSIDERRVTFLGFDAATEARYLGYVRFMVNVEGRYTHFDA 130
>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes.
pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes
Length = 516
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 416 SLRGSTPLDVAYSSVME-NTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWD 474
S+RG T LDV + + + L+LA+R+ E+ I ++ + + E G D+ +D
Sbjct: 384 SIRG-TALDVRVAFYPDAGSVLSLAVRKGASEQTVIKYTQSDATLSVDRTESG--DISYD 440
Query: 475 PVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANK 534
P G V+ +EE+ ++ + + C G+GE ++ +I +
Sbjct: 441 PAAGG-----------VHTAKLEEDGTGLVSIRVLVDTCSVEVFGGQGEAVISDLIFPSD 489
Query: 535 MSDRIA 540
SD +A
Sbjct: 490 SSDGLA 495
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,804,878
Number of Sequences: 62578
Number of extensions: 1014863
Number of successful extensions: 2516
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2483
Number of HSP's gapped (non-prelim): 22
length of query: 873
length of database: 14,973,337
effective HSP length: 107
effective length of query: 766
effective length of database: 8,277,491
effective search space: 6340558106
effective search space used: 6340558106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)