Query psy13311
Match_columns 873
No_of_seqs 89 out of 105
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 16:18:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13311.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13311hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ihba_ d.211.1.1 (A:) p18ink4 46.2 5.9 0.00043 32.5 3.0 40 25-66 113-152 (156)
2 d1wdya_ d.211.1.1 (A:) RNase L 44.2 6.5 0.00047 35.0 3.2 41 24-66 232-272 (285)
3 d1awcb_ d.211.1.1 (B:) GA bind 39.7 8.7 0.00064 31.3 3.1 36 28-66 117-152 (153)
4 d1u8va2 e.6.1.1 (A:1-275) 4-hy 32.9 4.2 0.0003 39.6 -0.1 27 477-504 4-33 (275)
5 d1k1aa_ d.211.1.1 (A:) bcl-3 { 27.4 15 0.0011 30.2 2.5 19 44-64 176-194 (228)
6 d1ixva_ d.211.1.1 (A:) 26S pro 27.3 17 0.0013 31.2 3.0 40 25-66 14-53 (229)
7 d1bd8a_ d.211.1.1 (A:) Cell cy 27.1 18 0.0013 30.1 3.0 37 26-66 116-152 (156)
8 d1bi7b_ d.211.1.1 (B:) Cell cy 25.2 19 0.0014 29.4 2.7 38 25-65 83-120 (125)
9 d1ixva_ d.211.1.1 (A:) 26S pro 22.3 32 0.0024 29.4 3.9 38 26-65 153-190 (229)
10 d1iknd_ d.211.1.1 (D:) I-kappa 22.3 39 0.0028 29.2 4.4 39 25-66 159-197 (221)
11 d1uoha_ d.211.1.1 (A:) 26S pro 21.3 27 0.002 30.6 3.2 16 38-53 162-177 (223)
No 1
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.22 E-value=5.9 Score=32.54 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 25 DHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 25 dh~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
+-+.+|+++...-.....-.|.|||++|+. .+|.++++++
T Consensus 113 ~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~--~~~~~iv~~L 152 (156)
T d1ihba_ 113 RVVEFLVKHTASNVGHRNHKGDTACDLARL--YGRNEVVSLM 152 (156)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHH--TTCHHHHHHH
T ss_pred cccccccccccccccccCCCCCCHHHHHHH--cCCHHHHHHH
Confidence 445678888765555555678999998664 5678777765
No 2
>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.18 E-value=6.5 Score=34.97 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 24 FDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 24 ~dh~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
.|.+.|||+...+-+......|.|||.+|+. ..|.+++|++
T Consensus 232 ~~~v~~lL~~~g~din~~d~~G~TpL~~A~~--~~~~eiv~~L 272 (285)
T d1wdya_ 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVE--LKLKKIAELL 272 (285)
T ss_dssp HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH--cCCHHHHHHH
Confidence 3557788877666666666778888887654 3577777664
No 3
>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.66 E-value=8.7 Score=31.33 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 28 SFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 28 ~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
.+|++. ..-+......|.|||++|+.. .|.+++|++
T Consensus 117 ~~ll~~-gad~~~~d~~g~Tpl~~A~~~--g~~eiv~lL 152 (153)
T d1awcb_ 117 ELLIKY-GADVHTQSKFCKTAFDISIDN--GNEDLAEIL 152 (153)
T ss_dssp HHHHHT-TCCTTCCCTTSCCHHHHHHHT--TCHHHHHHH
T ss_pred eecccc-ccCCcccCCCCCCHHHHHHHc--CCHHHHHhC
Confidence 455544 233333455677777775533 456666553
No 4
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]}
Probab=32.93 E-value=4.2 Score=39.62 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=21.4
Q ss_pred cccccccchhh---ceeecCcchhhhhhhhH
Q psy13311 477 EGERYLDFLRF---CVWVNGESVEENANLVI 504 (873)
Q Consensus 477 egERyLdFLrf---~VwvnGEsveENanvv~ 504 (873)
.|+.||+-||= .||++||.|++ -..|+
T Consensus 4 tg~~ylesL~~~~r~Vy~~Ge~V~d-v~~Hp 33 (275)
T d1u8va2 4 TAEQYIESLRKLNTRVYMFGEKIEN-WVDHP 33 (275)
T ss_dssp CHHHHHHHHTTCCCCEEETTEECSS-GGGCT
T ss_pred cHHHHHHHHhcCCCeEEECCEEecc-cccCH
Confidence 58999999986 59999999975 33443
No 5
>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.39 E-value=15 Score=30.16 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=8.4
Q ss_pred CCCCccccccccccCchHHHH
Q psy13311 44 RGSTPLDVAYSSVMENTELAL 64 (873)
Q Consensus 44 ~gstPlDVa~a~~~dn~pLlK 64 (873)
.|.|||-.|+. ..|.+++|
T Consensus 176 ~g~t~L~~A~~--~g~~~~v~ 194 (228)
T d1k1aa_ 176 SGSSALHSASG--RGLLPLVR 194 (228)
T ss_dssp TSCBHHHHHHH--HTCHHHHH
T ss_pred cCcchHHHHHH--cCCHHHHH
Confidence 44555554332 33444443
No 6
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.25 E-value=17 Score=31.21 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 25 DHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 25 dh~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
+-+.+||+.....+......|.|||..|+. ..|.++++++
T Consensus 14 ~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~--~g~~~iv~~L 53 (229)
T d1ixva_ 14 FKVQELLHSKPSLLLQKDQDGRIPLHWSVS--FQAHEITSFL 53 (229)
T ss_dssp HHHHHHHHHCGGGTTCCCTTSCCHHHHHHH--TTCHHHHHHH
T ss_pred HHHHHHHHcCCCcccccCCCCCCHHHHHHH--cCCccccchh
Confidence 446788988777777777899999998754 4567776654
No 7
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.14 E-value=18 Score=30.06 Aligned_cols=37 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred HHHHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 26 HLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 26 h~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
-+.||++..++ ......|.|||++| ....+.+++|++
T Consensus 116 i~~~L~~~~~~--~~~d~~G~TpL~~A--~~~g~~~iv~~L 152 (156)
T d1bd8a_ 116 VVSFLAAESDL--HRRDARGLTPLELA--LQRGAQDLVDIL 152 (156)
T ss_dssp HHHHHHTTSCT--TCCCTTSCCHHHHH--HHSCCHHHHHHH
T ss_pred ccccccccccc--cccCCCCCCHHHHH--HHcCCHHHHHHH
Confidence 34566655443 33446677777775 345556665544
No 8
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.18 E-value=19 Score=29.44 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHhcccccccCCCCCCCCccccccccccCchHHHHH
Q psy13311 25 DHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALA 65 (873)
Q Consensus 25 dh~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL 65 (873)
+-+.||+++ ..-+......|.|||++|. ...+.+++|+
T Consensus 83 ~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~--~~g~~~~v~~ 120 (125)
T d1bi7b_ 83 DTLVVLHRA-GARLDVRDAWGRLPVDLAE--ELGHRDVARY 120 (125)
T ss_dssp HHHHHHHHH-TCCSSCCCTTCCCHHHHHH--HHTCHHHHHH
T ss_pred ccccccccc-ccccccccCCCCCHHHHHH--HcCCHHHHHH
Confidence 344556654 3334444455666666543 2345555544
No 9
>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.34 E-value=32 Score=29.38 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=21.3
Q ss_pred HHHHHHhcccccccCCCCCCCCccccccccccCchHHHHH
Q psy13311 26 HLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALA 65 (873)
Q Consensus 26 h~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL 65 (873)
-+.+|++.....+......|.|||..|+. ..|.++++.
T Consensus 153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~--~~~~~~v~~ 190 (229)
T d1ixva_ 153 LIELLCGLGKSAVNWQDKQGWTPLFHALA--EGHGDAAVL 190 (229)
T ss_dssp HHHHHHTTTCCCSCCCCTTSCCHHHHHHH--TTCHHHHHH
T ss_pred ccccccccccccccccccccCCchhhhcc--cccHHHHHH
Confidence 34566666544444444566777776554 346666553
No 10
>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=39 Score=29.25 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=23.1
Q ss_pred HHHHHHHhcccccccCCCCCCCCccccccccccCchHHHHHH
Q psy13311 25 DHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENTELALAL 66 (873)
Q Consensus 25 dh~~~Ll~~~~~~~~~~s~~gstPlDVa~a~~~dn~pLlKL~ 66 (873)
|-+.||+++ ..-+......|.|||++|.. ..|.++++.+
T Consensus 159 ~~v~~Ll~~-gad~~~~~~~G~tpl~~A~~--~~~~~~~~~l 197 (221)
T d1iknd_ 159 DLVSLLLKC-GADVNRVTYQGYSPYQLTWG--RPSTRIQQQL 197 (221)
T ss_dssp HHHHHHHTT-TCCSCCCCTTCCCGGGGCTT--SSCHHHHHHH
T ss_pred HHHHHHHhc-CCcccccCCCCCCHHHHHHH--CCCHHHHHHH
Confidence 335677754 34445556677788877544 3466666655
No 11
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.33 E-value=27 Score=30.63 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=7.4
Q ss_pred ccCCCCCCCCcccccc
Q psy13311 38 LSRPSLRGSTPLDVAY 53 (873)
Q Consensus 38 ~~~~s~~gstPlDVa~ 53 (873)
+......|.|||..|+
T Consensus 162 i~~~d~~g~TpL~~Aa 177 (223)
T d1uoha_ 162 TNIQDTEGNTPLHLAC 177 (223)
T ss_dssp SCCCCTTCCCHHHHHH
T ss_pred eeeccCCCCceecccc
Confidence 3333444555555544
Done!