RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13311
(873 letters)
>gnl|CDD|216456 pfam01365, RYDR_ITPR, RIH domain. The RIH (RyR and IP3R Homology)
domain is an extracellular domain from two types of
calcium channels. This region is found in the ryanodine
receptor and the inositol-1,4,5- trisphosphate receptor.
This domain may form a binding site for IP3.
Length = 203
Score = 148 bits (376), Expect = 7e-41
Identities = 45/231 (19%), Positives = 75/231 (32%), Gaps = 28/231 (12%)
Query: 285 VGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLG 344
L + L+ EEE + K N Q L+R VH+ V+ ++ N
Sbjct: 1 EVLKLLEDLIKFCAQPEEEG---QHELKQNNLKPLRQRQRLLREEGVHKVVLELLQNPYD 57
Query: 345 RRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEP 404
+A D + ++ E + + Y F+ +
Sbjct: 58 EKAGG--DFAEELGDEKDEKM------------KEIVRLCYRFLQY---FCRGNRQNQAL 100
Query: 405 EKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELV 464
K +++ S G LD Y+ + N EL + E +E L + G V
Sbjct: 101 LAKHLDLMQLQSGPGILELDTLYAVLHNNPELLNEIIEAVIEHFVSLLEKHGRDPKYLDV 160
Query: 465 EKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENANLVIRLLIRRPECLG 515
K V G + D + V GE +L+I+ +R C G
Sbjct: 161 LKTLCVANGKAVRGTQ--DLICKEVLNPGE------DLLIQTNLRASVCSG 203
Score = 83.9 bits (208), Expect = 2e-18
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 17/98 (17%)
Query: 1 MVVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYSSVMENT 60
+V C RFL YFCR +RQNQ + HL L+ S G LD Y+ + N
Sbjct: 79 IVRLCYRFLQYFCRGNRQNQALLAKHLD--------LMQLQSGPGILELDTLYAVLHNNP 130
Query: 61 ELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEK 98
EL I + +E + ++ DP +
Sbjct: 131 ELLN---------EIIEAVIEHFVSLLEKHGRDPKYLD 159
>gnl|CDD|202095 pfam02026, RyR, RyR domain. This domain is called RyR for
Ryanodine receptor. The domain is found in four copies
in the ryanodine receptor. The function of this domain
is unknown.
Length = 95
Score = 126 bits (318), Expect = 2e-34
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 9/90 (10%)
Query: 606 NYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEES---------GGSVHPQLVP 656
+ P PID +N+TL +++ + E+LAEN H++WAK K E+ GG HP LVP
Sbjct: 1 GFIPAPIDTSNVTLPEDLEELVEKLAENYHEVWAKDKIEQGWTYGELRDDGGKTHPCLVP 60
Query: 657 YDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
YD LT+KEK+ DRE ++E LK L GY +
Sbjct: 61 YDTLTEKEKEYDREPARETLKTLLALGYSI 90
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 33.6 bits (77), Expect = 0.37
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 20/101 (19%)
Query: 316 NHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEP 375
F D + I V V + L EPQ + E EE
Sbjct: 22 LFVFLHQEDFVGIELVPLAVFLLAAKVL--------------EAPTEEPQPE-PEPPEEQ 66
Query: 376 EKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPS 416
KP + PK +P+PEKK + +P
Sbjct: 67 PKPPTEP-----ETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.1 bits (76), Expect = 0.43
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 336 MAVMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELE 395
++V M Q+ P E EP+ E EP K + +
Sbjct: 48 ISVTMVAPADLEPPQAVQPPPEPVVEPEPEP---EPIPEPPKE----APVVIPKPEPKPK 100
Query: 396 EDPKVEPEPEKKTPEVLSRP 415
PK +P+P KK E R
Sbjct: 101 PKPKPKPKPVKKVEEQPKRE 120
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 32.5 bits (74), Expect = 1.2
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 360 QEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEK 406
+ E EE +KPG +K YN+ + + PK+ E E
Sbjct: 552 WTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQ-GKAPKLTEEEEA 597
>gnl|CDD|221356 pfam11983, DUF3484, Domain of unknown function (DUF3484). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 65 to 81 amino acids in length. This domain is
found associated with pfam02491.
Length = 70
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 347 AQAQSDAPQTGTGQEGEPQSKHKENGEEPE--KPGVFKKFYNF 387
QS AP E +PQ + E EPE K + + F
Sbjct: 23 EFEQSVAPAPTVPYE-QPQKQPTEESNEPEEPKEKLTDRVKGF 64
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 30.3 bits (67), Expect = 2.4
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 354 PQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLS 413
+ +EGE + + +E GEE +P + +E E +P+ EPEPE + PE
Sbjct: 68 EEPEPEEEGEEEPEPEEEGEEEPEPEETGE--------EEPEPEPEPEPEPEPE-PEPEP 118
Query: 414 RPSLRGSTPLDVA 426
P +T VA
Sbjct: 119 EPEPGAATLKSVA 131
Score = 29.2 bits (64), Expect = 5.3
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 15/79 (18%)
Query: 354 PQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLS 413
+ +EGE + + +E GEE +P E E +P+ EPEPE +
Sbjct: 78 EEPEPEEEGEEEPEPEETGEEEPEP--------------EPEPEPEPEPEPEPEPEPEPG 123
Query: 414 RPSLRG-STPLDVAYSSVM 431
+L+ + P +A ++++
Sbjct: 124 AATLKSVALPFAIAAAALV 142
>gnl|CDD|204778 pfam11922, DUF3440, Domain of unknown function (DUF3440). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 53 to 190 amino acids in length. This domain is
found associated with pfam01507. This domain has a
conserved KND sequence motif.
Length = 154
Score = 29.6 bits (67), Expect = 3.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 440 LREHYLEKIAIYLSRCGLQSNSELVEKGYPD 470
REHYL KIA+ L + L ++ YPD
Sbjct: 82 TREHYLRKIAVSLQWWRKKGMGCLPDEEYPD 112
>gnl|CDD|227308 COG4974, XerD, Site-specific recombinase XerD [DNA replication,
recombination, and repair].
Length = 300
Score = 30.2 bits (69), Expect = 4.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 673 QEFLKYLQYQGYKLRSIARR 692
+E+L L QG SIAR
Sbjct: 58 REYLTELAEQGLSATSIARA 77
>gnl|CDD|226478 COG3969, COG3969, Predicted phosphoadenosine phosphosulfate
sulfotransferase [General function prediction only].
Length = 407
Score = 30.5 bits (69), Expect = 4.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 440 LREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGW 473
REHY KIA+YL +KG P LG
Sbjct: 324 TREHYRNKIAVYLRWWQ--------KKGGPLLGI 349
>gnl|CDD|184284 PRK13732, PRK13732, single-stranded DNA-binding protein;
Provisional.
Length = 175
Score = 28.9 bits (64), Expect = 6.9
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 16/71 (22%)
Query: 340 MNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPK 399
M LGR Q + PQ G Q G+PQS + G +K
Sbjct: 109 MQMLGRAPQQNAQ-PQPGPQQNGQPQSADATKKGGAKTKGRGRK---------------A 152
Query: 400 VEPEPEKKTPE 410
+PEP+ + PE
Sbjct: 153 AQPEPQPQPPE 163
>gnl|CDD|213022 cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of
rhizobial NodB-like proteins. This family belongs to
the large and functionally diverse carbohydrate esterase
4 (CE4) superfamily, whose members show strong sequence
similarity with some variability due to their distinct
carbohydrate substrates. It includes many rhizobial NodB
chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like
proteins, mainly from bacteria and eukaryotes, such as
chitin deacetylases (EC 3.5.1.41), bacterial
peptidoglycan N-acetylglucosamine deacetylases (EC
3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which
catalyze the N- or O-deacetylation of substrates such as
acetylated chitin, peptidoglycan, and acetylated xylan.
All members of this family contain a catalytic NodB
homology domain with the same overall topology and a
deformed (beta/alpha)8 barrel fold with 6- or 7 strands.
Their catalytic activity is dependent on the presence of
a divalent cation, preferably cobalt or zinc, and they
employ a conserved His-His-Asp zinc-binding triad
closely associated with the conserved catalytic base
(aspartic acid) and acid (histidine) to carry out
acid/base catalysis. Several family members show
diversity both in metal ion specificities and in the
residues that coordinate the metal.
Length = 171
Score = 29.1 bits (66), Expect = 7.0
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 9/45 (20%)
Query: 470 DLGWDPVEGERYLDFLR-------FCVWVNGESVEENANLVIRLL 507
D G DP + LD L F V GE+VE++ +LV R++
Sbjct: 8 DDGPDPEYTPKILDILAEYGVKATFFV--VGENVEKHPDLVRRIV 50
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 30.0 bits (68), Expect = 8.0
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 374 EPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLR 418
P +PG+ +F+ + A+ E+ K + +P K R R
Sbjct: 562 PPAQPGLLSRFFGALKALFSGGEETKPQEQPAPKAEAKPERQQDR 606
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,344,371
Number of extensions: 4620306
Number of successful extensions: 4458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4441
Number of HSP's successfully gapped: 27
Length of query: 873
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 768
Effective length of database: 6,280,432
Effective search space: 4823371776
Effective search space used: 4823371776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.3 bits)