RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13311
(873 letters)
>4esu_A Ryanodine receptor 1; phosphorylation, skeletal, metal transport;
1.59A {Oryctolagus cuniculus} PDB: 4ert_A 4ett_A 4etu_A
3rqr_A
Length = 210
Score = 124 bits (311), Expect = 2e-32
Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 3/93 (3%)
Query: 597 AQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQ 653
Y+P P D++ +TLSRE+Q MAE+LAEN H+ W +KKK+E GG HP
Sbjct: 115 TAQTYDPREGYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTHPL 174
Query: 654 LVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
LVPYD LT KEK +DRE++QE LK+LQ GY +
Sbjct: 175 LVPYDTLTAKEKARDREKAQELLKFLQMNGYAV 207
Score = 85.6 bits (211), Expect = 5e-19
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 12/127 (9%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---------SGGSVHPQLV 655
N+ P P++ N+ + ++ + + AE +H+ WA K + HP L
Sbjct: 3 ANFDPRPVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWMYGENVDEELKTHPMLR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQG 715
PY ++K+K+ R +E LK + + +I + + E R +
Sbjct: 63 PYKTFSEKDKEIYRWPIKESLKAMIAWEW---TIEKAREGEEERTEKKKTRKISQTAQTY 119
Query: 716 VLSLRFS 722
++
Sbjct: 120 DPREGYN 126
>4etv_A Ryanodine receptor 2; phosphorylation, cardiac, metal transport;
1.65A {Mus musculus}
Length = 209
Score = 122 bits (308), Expect = 5e-32
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 3/102 (2%)
Query: 588 RCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE-- 645
+ +Q Y P IDM+N+TLSR++ MAE +AEN H+IWAKKKK E
Sbjct: 106 NRTRRISQTSQVSIDAAHGYSPRAIDMSNVTLSRDLHAMAEMMAENYHNIWAKKKKLELE 165
Query: 646 -SGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
GG HP LVPYD LT EK KDRE++Q+ K+LQ GY +
Sbjct: 166 SKGGGNHPLLVPYDTLTAAEKAKDREKAQDIFKFLQISGYVV 207
Score = 84.8 bits (209), Expect = 1e-18
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---------SGGSVHPQLV 655
N++P P+D +N+T+ +++ + AE+SHD W+ K + P +
Sbjct: 3 ANFNPQPVDTSNITIPEKLEYFINKYAEHSHDKWSMDKLANGWIYGEIYSDSSKIQPLMK 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSL 707
PY LL++KEK+ R +E LK + G+ I R + +S+ R +
Sbjct: 63 PYKLLSEKEKEIYRWPIKESLKTMLAWGW---RIERTREGDSMALYNRTRRI 111
>4erv_A Ryanodine receptor 3; metal transport; 1.75A {Homo sapiens}
Length = 207
Score = 122 bits (307), Expect = 6e-32
Identities = 46/88 (52%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 602 SGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---SGGSVHPQLVPYD 658
+ +Y P P+D++N+ LSRE+Q M E +AEN H+IWAKKKK E GG HP LVPYD
Sbjct: 118 NQGNSYSPAPLDLSNVVLSRELQGMVEVVAENYHNIWAKKKKLELESKGGGSHPLLVPYD 177
Query: 659 LLTDKEKKKDRERSQEFLKYLQYQGYKL 686
LT EK KDRE++Q+ K+LQ G +
Sbjct: 178 TLTAAEKFKDREKAQDLFKFLQVNGIIV 205
Score = 86.7 bits (214), Expect = 2e-19
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 605 GNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---------SGGSVHPQLV 655
N+ P PI+ N +L +++ + + AE+SHD WA K + HP +
Sbjct: 3 ANFDPKPINTMNFSLPEKLEYIVTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIR 62
Query: 656 PYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSL 707
P+ LT+KEK+ R ++E LK + G+ + R LRS+
Sbjct: 63 PFKTLTEKEKEIYRWPARESLKTMLAVGWTVERTKEGEALVQQRENEKLRSV 114
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative,
structural genomics, MI center for structural genomics
(MCSG); 2.54A {Bacteroides thetaiotaomicron}
Length = 103
Score = 90.0 bits (223), Expect = 7e-22
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 597 AQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEE---------SG 647
+ M +Y P P+D++ + L + ++ER+AEN H++WAK + +E
Sbjct: 1 SNAMKENKLDYIPEPMDLSLVDLPESLIQLSERIAENVHEVWAKARIDEGWTYGEKRDDI 60
Query: 648 GSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKL 686
HP LVPYD L ++EK+ DR + +K ++ G+++
Sbjct: 61 HKKHPCLVPYDELPEEEKEYDRNTAMNTIKMVKKLGFRI 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 3e-12
Identities = 86/709 (12%), Positives = 203/709 (28%), Gaps = 233/709 (32%)
Query: 70 LLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKLQMCYLLHHLC 129
+ ++ E+++ ++M + + L L
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVS----------------------------GTLRLFWTLL 72
Query: 130 DIQLRHRVESIIAFSHDFVGD-LQTD------QLRRYIEIKQSDLPSAV-AAKKTREFRC 181
Q E ++ FV + L+ + ++ E +Q + + + ++ R +
Sbjct: 73 SKQ-----EEMVQ---KFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDRLYND 122
Query: 182 PPREQFQNLDR--KTLKIARVVRDLRERMDHFHESL----M----KQV-SLLALQEPERR 230
N+ R LK+ + + +LR +++ + K +L + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP-----AKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 231 VKSIIYLGSDQFPCE---LSDIGLLVRQYDSVGELIRALEKTYVINNKTKDDVSQMWVGL 287
+ + L+ ++ +S ++ L+K + W
Sbjct: 178 ---------CKMDFKIFWLN-----LKNCNSPETVLEMLQKLLY-------QIDPNWTSR 216
Query: 288 SQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPD-LIRILR-V-HENVMA------- 337
S S + +++ + EL R K + + L+ +L V +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSK--------PYENCLL-VLLNVQNAKAWNAFNLSCK 267
Query: 338 VMMNTLGRRAQAQSDAPQTGTGQEGEPQSKHKENG-EEPEKPGVFKKFYNFVNAVKELEE 396
+++ T R + +D H E + K+ L+
Sbjct: 268 ILLTT---RFKQVTDF--LSAATTTHISLDHHSMTLTPDEVKSLLLKY---------LDC 313
Query: 397 DPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCG 456
P+ P EVL+ + P ++ + +A ++R+
Sbjct: 314 RPQDLP------REVLT-----TN-PRRLS----I----IAESIRDG--LATWDNWKHVN 351
Query: 457 LQSNSELVEKGYPDLGWDPVEG-ERYLDFLRF-----------CV-WVNGESVEENANLV 503
+ ++E L +P E + + F + W + ++ + +V
Sbjct: 352 CDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMVV 407
Query: 504 IRLLIRRPECLGPALRGEGEGLLQ----AIIEANKMSDRIAARRSII---PIDDGVTDFD 556
+ L + L + E + + K+ + A RSI+ I D D
Sbjct: 408 VNKLHKY--SL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF-DSD 462
Query: 557 HPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTN 616
+P D Y FY + +H I+
Sbjct: 463 DLIPPYLD--QY---------FYSHIG-----------------------HHLKNIEHP- 487
Query: 617 LTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQLVPYDLLTDKEK------KKDRE 670
E + + + + ++K + + + L + D +
Sbjct: 488 -----ERMTLFRMVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 671 RSQ---EFLKYLQYQGYKL-RS-------IARRGKNESL---RARAILR 705
+ L +L L S IA ++E++ + + R
Sbjct: 541 YERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 69.9 bits (170), Expect = 3e-12
Identities = 99/580 (17%), Positives = 160/580 (27%), Gaps = 215/580 (37%)
Query: 13 CRTSRQNQKAMFDH---LSF--------LLENSNILLSRPSLRGSTPLDVAYSSVMENTE 61
C + + Q M L+ +LE LL + ++ D + + +
Sbjct: 171 CLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 62 LALALSRL---------LLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMK 112
+ L RL LL + +V+ N + W+ F +
Sbjct: 230 IQAELRRLLKSKPYENCLL---VLL-NVQ------NAKAWN-AF--NLS----------- 265
Query: 113 MAEGAKLQMCYLL--------------HHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRR 158
C +L I L H + + D V L L +
Sbjct: 266 ---------CKILLTTRFKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSL----LLK 309
Query: 159 YIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHF-HESLMK 217
Y++ + DLP T R ++ IA +RD D++ H + K
Sbjct: 310 YLDCRPQDLPR--EVLTTNPRRL-------SI------IAESIRDGLATWDNWKHVNCDK 354
Query: 218 -----QVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELIRALEKTYVI 272
+ SL L+ E R K L FP S I +
Sbjct: 355 LTTIIESSLNVLEPAEYR-KMFDRLSV--FP-------------PSA--HIP--TILLSL 394
Query: 273 --NNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNNHTFFQHPDLIRILR 330
+ K DV + L + SL+ E+ K T + L+
Sbjct: 395 IWFDVIKSDVMVVVNKLHK-YSLV-------------EKQPK---ESTISIP-SIYLELK 436
Query: 331 VHENVMAVMMNTLGRRAQAQSDAPQTGTGQEGEPQ------SKHKENGEEPEKPGVFKKF 384
V + ++ Q H +N E PE+ +F+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 385 Y---NFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALAL- 440
+ F+ E+K +R + A S++ NT L
Sbjct: 497 FLDFRFL----------------EQK---------IRHDSTAWNASGSIL-NTLQQLKFY 530
Query: 441 REHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERYLDFLRFCVWVNGESVEENA 500
+ + + Y LV LDFL +EEN
Sbjct: 531 KPYICDNDPKY---------ERLVNA--------------ILDFLP--------KIEEN- 558
Query: 501 NLVIRLLIRRPEC--LGPALRGEGEGLLQAIIEANKMSDR 538
LI L AL E E + + EA+K R
Sbjct: 559 ------LICSKYTDLLRIALMAEDEAIFE---EAHKQVQR 589
Score = 57.9 bits (139), Expect = 1e-08
Identities = 104/734 (14%), Positives = 216/734 (29%), Gaps = 225/734 (30%)
Query: 126 HHLCDI---QLRHRVESIIA-FSHDFVGDLQTDQLRRYIEIKQSDLPSAVAAKKTREFRC 181
HH D + +++ + I++ F FV + + ++ D+P ++ +K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDC----KDVQ----DMPKSILSK------- 48
Query: 182 PPREQFQNLDRKTLKIARVVRDLRERMDHFHESLMKQVSLLALQEPERRVKSIIYLGSDQ 241
E +DH ++ ++ + +
Sbjct: 49 ------------------------EEIDH----------IIMSKDAVSGTLRLFWT---- 70
Query: 242 FPCELSDIGLLVRQYDSVGELIR-ALEKTYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQ 300
LL +Q + V + + L Y ++ +S I++ Q S
Sbjct: 71 ---------LLSKQEEMVQKFVEEVLRINY------------KFL-MSPIKTE-QRQPSM 107
Query: 301 EEEELM--RERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGT 358
+ R+RL+ +N F ++ + R+ L R P
Sbjct: 108 MTRMYIEQRDRLYN--DNQVFAKYN----VSRLQ------PYLKL--RQALLELRPAKNV 153
Query: 359 GQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEP----------EKKT 408
+G G K A+ KV+ + +
Sbjct: 154 LIDG--------------VLGSGKT----WVALDVCL-SYKVQCKMDFKIFWLNLKNCNS 194
Query: 409 PEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGY 468
PE + + +D ++S +++ + LR H ++ L R L K Y
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQA---ELRRL-------LKSKPY 243
Query: 469 PD--LGWDPVEGERYLDFLRF-C---VWVNGESVEENANLVIRLLIRRPECLGPALRGEG 522
+ L V+ + + C + + V + + I E
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 523 EGLLQAIIEANKMSDRIAARR------SIIP--IDDGVTDFDH-PLPESEDDEDYIDTGA 573
+ LL ++ SII I DG+ +D+ + I++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 574 AILNFYCTLVDLLGRCA--PDSTVIAQDMGSGPGNYHPNPIDMTNLTLSR--------EM 623
+L + R + P S I P LS ++
Sbjct: 364 NVLEPA-EYRKMFDRLSVFPPSAHI--------------PTI----LLSLIWFDVIKSDV 404
Query: 624 QNMAERLAENS-------------HDIWAK-KKKEESGGSVHPQLVPYDLLTDKEKKKDR 669
+ +L + S I+ + K K E+ ++H +V + + D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 670 ERSQEFLKYLQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPG 729
+ + G+ L++I + R + L RF +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVF------------LDFRF-L------ 503
Query: 730 EEKAKSDMPSGLIPGHKQSVVLFLE--RVYGIETQDLFFRILE--EAFLPDLRTATMLDR 785
E+K + D + G + + L+ + Y + + R++ FLP + L
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP--KIEENLIC 561
Query: 786 SDGSESDMA-LAMN 798
S +D+ +A+
Sbjct: 562 SK--YTDLLRIALM 573
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 95/557 (17%), Positives = 166/557 (29%), Gaps = 208/557 (37%)
Query: 348 QAQSDAPQTGTGQEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVEPEPEKK 407
P G + EP + E + KF +V VEP +
Sbjct: 38 NKILPEPTEGFAADDEPTT-------PAE---LVGKFLGYV--------SSLVEPSKVGQ 79
Query: 408 TPEVLS-------RPSLRGSTPLDV--AYSSVMENTELALALREHYLEKIAIYLSRCGL- 457
+VL+ L G+ D+ + +++ + L + I Y++ +
Sbjct: 80 FDQVLNLCLTEFENCYLEGN---DIHALAAKLLQENDTTLVKTKEL---IKNYITARIMA 133
Query: 458 ------QSNSEL---VEKG----YPDLGWDPVEG----ERYLDFLRFCVWVNGESVEENA 500
+SNS L V +G G G + Y + LR + +
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFG-----GQGNTDDYFEELR-------DLYQTYH 181
Query: 501 NLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDGVTDFDHPLP 560
LV L+ E L L++ ++A K+ + + I + + + P
Sbjct: 182 VLVGDLIKFSAETLSE--------LIRTTLDAEKVFTQG------LNILEWLEN-----P 222
Query: 561 ESEDDEDYIDTGAAI---LNF------YCTLVDLLGRCAPD--------STVIAQDM--- 600
+ D+DY+ + I L Y LLG P +T +Q +
Sbjct: 223 SNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVTA 280
Query: 601 ------GSGPGNYHPNPIDMTNLTLS----REMQNMAERLAENSHDIWAK--KKKEESG- 647
S ++ + +T+ + + + E+
Sbjct: 281 VAIAETDSWE-SFFVSVRKA--ITVLFFIGVRCYEAYPNTS-----LPPSILEDSLENNE 332
Query: 648 GSVHPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGYKLRSIARRGKNESL-RARAILRS 706
G P L +L +E+ Q+++ N L + + S
Sbjct: 333 GVPSPMLSISNL--------TQEQVQDYVNKT---------------NSHLPAGKQVEIS 369
Query: 707 LV----------PLEDLQG-VLSLRFSIACPGPGEEKAKSDMPSGLIPGHKQSVVLFLER 755
LV P + L G L+LR + KA PSGL QS + F ER
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLR---------KAKA----PSGL----DQSRIPFSER 412
Query: 756 VYGIETQDLFFRI--------LEEA---FLPDLRTATML-----------DRSDGSESDM 793
+ F + L A DL + D DG SD+
Sbjct: 413 KLKFSNR--FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDL 468
Query: 794 ALAMNRYIGNSVLPLLI 810
R + S+ ++
Sbjct: 469 -----RVLSGSISERIV 480
Score = 62.8 bits (152), Expect = 4e-10
Identities = 103/638 (16%), Positives = 181/638 (28%), Gaps = 231/638 (36%)
Query: 210 HFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPCELSDIGLLVRQYDSVGELI-RALEK 268
F S +++ L EP +D P + EL+ + L
Sbjct: 27 FFIASQLQEQFNKILPEPTEG------FAADDEP-------------TTPAELVGKFLG- 66
Query: 269 TYVINNKTKDDVSQMWVGLSQIRSLLPVQMSQEEEELMRERLWKLVNN-HTF---FQHPD 324
YV + V Q +L + +++ E + N+ H +
Sbjct: 67 -YVSSLVEPSKVGQF-------DQVLNLCLTEFENCYLEG------NDIHALAAKLLQEN 112
Query: 325 LIRILRVHE------NVMAVMMNTLGRRAQ-AQSDAPQTGT--------GQEGEPQSKHK 369
+++ E + +++ A A G GQ G
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-G------- 164
Query: 370 ENGEEPEKPGVFK---KFYN---------FVNAVKELEEDPKVEPEPEKKTPEV------ 411
N ++ F+ Y + + L E + + EK +
Sbjct: 165 -NTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 412 LSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDL 471
L PS +TP D Y + + ++ L + ++A Y+ L L
Sbjct: 219 LENPS---NTP-DKDY---LLSIPISCPL--IGVIQLAHYVVTAKL-------------L 256
Query: 472 GWDPVEGERYLDFLRFCV--------------WVNGESVEENANLVIRLL----IR---- 509
G+ P E YL W ES + I +L +R
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSW---ESFFVSVRKAITVLFFIGVRCYEA 313
Query: 510 RPEC-LGPAL------RGEGE--------GLLQAIIEANKMSDRIAARRSIIPIDDGVTD 554
P L P++ EG L Q ++ D + S +P V
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-----DYVNKTNSHLPAGKQV-- 366
Query: 555 FDHPLPESEDDEDYIDTGAAILNFYCTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDM 614
I +++N + V+ SGP P +
Sbjct: 367 -------------EI----SLVN------------GAKNLVV-----SGP------PQSL 386
Query: 615 TNLTLS-REMQNMAERLAENSHD---IWAKKKKEESGGSVHPQLVPY--DLLTDKEKK-- 666
L L+ R+ + A + D I ++K + P P+ LL
Sbjct: 387 YGLNLTLRKAK------APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 667 KDRERSQ-EF----LK---YLQYQGYKLR----SIARRGKNESLRARAILRSLVPLEDLQ 714
KD ++ F ++ Y + G LR SI+ E + I+R V +
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS-----ERI-VDCIIRLPV---KWE 491
Query: 715 GVLSLRFS-IACPGPGEEKAKSDMPSGLIPGHKQSVVL 751
+ + I GPG + G V++
Sbjct: 492 TTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Score = 41.2 bits (96), Expect = 0.002
Identities = 38/295 (12%), Positives = 87/295 (29%), Gaps = 84/295 (28%)
Query: 2 VVACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILLSRPSLRGSTPLDVAYS--SVMEN 59
V+ + + + +L +S L++ + + S S +
Sbjct: 243 VIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVT------AVAIAETDSWESFFVS 295
Query: 60 TELALALSRLLLVGMIRDEDVEKLLMMINPETWDPTFEKDGKDEHRKGLLHMKMAEGAKL 119
A+ + L +G +R + + P+ +D + EG
Sbjct: 296 VRKAITV--LFFIG-VRCYEA------YPNTSLPPSILEDSLEN----------NEGV-- 334
Query: 120 QMCYLLHHLCDIQLRHRVESIIAFSHDFVGDLQTDQLRRYIEIKQSDLPS----AVAAKK 175
+L + +L +Q++ Y+ S LP+ ++
Sbjct: 335 -PSPMLS---------------------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 176 TREFRC-----PPR--EQFQNLDRK-----TLKIARVVRDLRE-RMDH--------FHES 214
+ PP+ RK L +R+ R+ + + FH
Sbjct: 373 GA--KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 215 LMKQVSLLALQEPERRVKSIIYLGSD-QFPCELSDIGLLVRQYDS--VGELIRAL 266
L+ S L ++ + ++ + D Q P + G +R ++ +
Sbjct: 431 LLVPASDLINKDLVK--NNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
Score = 40.0 bits (93), Expect = 0.004
Identities = 32/141 (22%), Positives = 50/141 (35%), Gaps = 45/141 (31%)
Query: 195 LKIARVVRDLRER---MDHF---HESLMKQVSLLALQEPERRVKSIIYLGSD--QFPCEL 246
+ I +V + R M E ++A+ P R S + Q+ E
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI-NPGRVAAS---FSQEALQYVVER 1832
Query: 247 --SDIGLLV---------RQYDSV--GELIRALEK-TYVIN-NKTKD-DVSQMWVGLSQI 290
G LV +QY V G+L RAL+ T V+N K + D+ +
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQY--VAAGDL-RALDTVTNVLNFIKLQKIDIIE-------- 1881
Query: 291 RSLLPVQMSQEEEELMRERLW 311
L +S EE + L+
Sbjct: 1882 ---LQKSLSLEE---VEGHLF 1896
Score = 38.9 bits (90), Expect = 0.010
Identities = 62/386 (16%), Positives = 106/386 (27%), Gaps = 166/386 (43%)
Query: 297 QMSQEE---EELMRE-----RLWKLVNNHTF----FQHPDLIR----ILRVHENVMAVMM 340
Q SQE+ +L + +W +NH F D++ L +H
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG------ 1677
Query: 341 NTLGRRAQAQSDAPQTGTGQEGEPQSKH--KENGEEPEKPGVFKKFYNFVNAVKELEEDP 398
G+R + A T +G+ +++ KE E Y F
Sbjct: 1678 GEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS-------YTF--------RSE 1722
Query: 399 KVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALREHYLEKIAIYLSRCGLQ 458
K +LS T + T+ AL L E A +
Sbjct: 1723 K----------GLLSA------T----------QFTQPALTLME-----KAAF------- 1744
Query: 459 SNSELVEKGY-PD--------LGWDPVEGERY--L----DFLRFCVWVNGESVEENANLV 503
+L KG P LG E Y L D + E+
Sbjct: 1745 --EDLKSKGLIPADATFAGHSLG------E-YAALASLADVMSI----------ESL--- 1782
Query: 504 IRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPIDDG--VTDFDHPLPE 561
+ ++ RG +Q + +++ + +I I+ G F
Sbjct: 1783 VEVV---------FYRGM---TMQVAVPRDELG---RSNYGMIAINPGRVAASFSQ---- 1823
Query: 562 SEDDEDYIDTGAA-------ILNFYCTLVDLLGRCAPDST-VIAQDMGSGPG-------- 605
E + ++ I+N+ + V A G
Sbjct: 1824 -EALQYVVERVGKRTGWLVEIVNYNV----------ENQQYVAA---GDLRALDTVTNVL 1869
Query: 606 NY-HPNPIDMTNLTLSREMQNMAERL 630
N+ ID+ L S ++ + L
Sbjct: 1870 NFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 37.3 bits (86), Expect = 0.029
Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 62/198 (31%)
Query: 682 QGYKLRSIA-RRGKNESLRARAILRSLVPLEDLQGVLSLR--FSIACPGPGEEKAKSDMP 738
Y R + G SL +L VP L+ F+ P P E A D P
Sbjct: 2 DAYSTRPLTLSHG---SLEH-VLL---VPTASFFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 739 SGLIPGHKQSVV-L------FLERVYGIETQDLFFRIL-------EEAFLP--DLRT--A 780
+ + L ++ + F ++L E +L D+ A
Sbjct: 55 T--------TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 781 TMLDRSDGSESDMA----------LAMNRYIGNSVLPLLISH-----AKFYN------DA 819
+L +D + + R L A+ +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 820 DNYANLLD--ATLHTVYR 835
D+Y + L+ Y
Sbjct: 167 DDY---FEELRDLYQTYH 181
Score = 37.0 bits (85), Expect = 0.039
Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 67/212 (31%)
Query: 186 QFQNLDRKTLKIARVVRDLRERMD-HFHESLMKQVSLLALQEPERRVKSIIYLGSDQFPC 244
Q Q + K ++ +D+ R D HF ++ + + + P I+ G ++
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL---TIHFGGEK--- 1680
Query: 245 ELSDIGLLVRQ------YDSVGELIRALEKTYVINNKTKDDVSQMWVG----LS-----Q 289
G +R+ ++++ + EK + + S + LS Q
Sbjct: 1681 -----GKRIRENYSAMIFETIVDGKLKTEK--IFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 290 IRSLLPVQMSQEEEELMRERLWKLVNNHTFFQ-HP-----------------DLIRILRV 331
L ++ + E ++ L+ F H L+ ++
Sbjct: 1734 PALTL-MEKAA--FEDLKS--KGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVF- 1787
Query: 332 HENVMAVMMNTLGRRAQAQSDA-PQTGTGQEG 362
R A P+ G+
Sbjct: 1788 -------------YRGMTMQVAVPRDELGRSN 1806
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 621 REMQNMAERLAENSHDIWAKKKKEESGGSVHPQL----VPYDLLTDKEKKKDRERSQEFL 676
RE Q +RL E D +K ++E L +K K +R + F
Sbjct: 91 REEQ--RKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
Query: 677 K 677
+
Sbjct: 147 Q 147
Score = 28.6 bits (63), Expect = 6.1
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 26/98 (26%)
Query: 300 QEEEELMRERLWKLVNNHTFFQHPDLIRILRVHENVMAVMMNTLGRRAQAQSDAPQTGTG 359
+E E +R+ W+ ++ L VM R +A+ D +
Sbjct: 81 TQEPESIRK--WREEQR-------KRLQELDAASKVMEQEW-----REKAKKDL-EEWNQ 125
Query: 360 QEGEPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEED 397
++ E K+K N + K FY ++ + D
Sbjct: 126 RQSEQVEKNKINNRIAD-----KAFY------QQPDAD 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.23
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 18/45 (40%)
Query: 389 NAVKELEEDPKV-EPEPEKKTPEVLSRPSLRGSTPLDVAYSSVME 432
A+K+L+ K+ + S P+L A + ME
Sbjct: 20 QALKKLQASLKLYADD---------SAPAL--------AIKATME 47
>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A
{Enterococcus faecalis}
Length = 418
Score = 31.3 bits (71), Expect = 1.7
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 493 GESVEENANLVIRLL----IRRPECLGPALRGEGEGLLQAIIEANKMSDRIAARRSIIPI 548
GE+V E AN++ + IR G+G + + E+ + + +
Sbjct: 102 GETVRETANMISFMADIIGIR-----DDMYIGKGNAYMHEVSESVQEGYKDGVLEQRPTL 156
Query: 549 DDGVTDFDHP 558
+ D DHP
Sbjct: 157 VNLQCDIDHP 166
>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 168
Score = 29.6 bits (66), Expect = 2.5
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 154 DQLRRYIEIKQSDLPSAVAAKKTREFRCPPREQFQNLDRKTLKIARVVRDLRERMDHFHE 213
+ +R I IKQ D + +K +F E F L RK ++ D+ + ++H
Sbjct: 68 NSVRFSIRIKQVDEIERILVRKFMQFLMGRAESFFILRRKPVQ----GYDISFLITNYHT 123
Query: 214 SLMKQVSLL 222
M + L+
Sbjct: 124 EEMLKHKLV 132
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 28.5 bits (63), Expect = 3.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 373 EEPEKPGVFKKFYNFVNAVKELEEDPKVE 401
E EK G K F + E+E +P V+
Sbjct: 78 ESKEKFGKPNKRKGFSEGLWEIENNPTVK 106
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 29.9 bits (68), Expect = 3.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 473 WDPVEGERYLDFL 485
D + G RYLD
Sbjct: 48 VDAITGRRYLDMF 60
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 29.2 bits (65), Expect = 6.3
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 651 HPQLVPYDLLTDKEKKKDRERSQEFLKYLQYQGY---KLRSIARRGKNESLRARA 702
H + L + +++ R +F + L +LR ++ G + +R
Sbjct: 5 HHHSSGRENLYFQGSEREASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMT 59
>3btp_A Single-strand DNA-binding protein; TIM barrel, unique topology,
novel fold, structural genomics structural proteomics
center, ISPC, crown GALL tumor; 2.30A {Agrobacterium
tumefaciens str}
Length = 556
Score = 29.1 bits (64), Expect = 7.5
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 603 GPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDIWAKKKKEESGGSVHPQL------VP 656
G GNY+P P+ + L ++ L + K E H ++ +
Sbjct: 155 GVGNYYPPPLAFERIDLPEQLAAQLHNLEPREQSKQCFQYKLEVWNRAHAEMGITGTDIF 214
Query: 657 YDLLTDKEKKKDRE-RSQEFLKYLQYQGYKLRSIARR 692
Y TDK K DR + + +Y+Q + Y R I +R
Sbjct: 215 YQ--TDKNIKLDRNYKLRPEDRYIQTEKYGRREIQKR 249
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme complex, enzyme-metal complex,
isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa}
SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A*
1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A*
3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 28.7 bits (65), Expect = 8.2
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 17/58 (29%)
Query: 580 CTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDI 637
C+++ L C D G+ P N+HP+P NL +++ ++ + D+
Sbjct: 197 CSVIPL--YCEVD--------GNFP-NHHPDPGKPENL------KDLIAKVKAENADL 237
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural
genomics, seattle structural genomics center for
infectious disease; 1.95A {Burkholderia thailandensis}
Length = 485
Score = 28.8 bits (65), Expect = 9.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 17/58 (29%)
Query: 580 CTLVDLLGRCAPDSTVIAQDMGSGPGNYHPNPIDMTNLTLSREMQNMAERLAENSHDI 637
C LV+L D G+ P N+HP+P NL Q++ +L +I
Sbjct: 219 CELVEL--FTDID--------GNFP-NHHPDPAHPENL------QDVIAKLKATDAEI 259
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,456,032
Number of extensions: 851555
Number of successful extensions: 1928
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 43
Length of query: 873
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 771
Effective length of database: 3,853,851
Effective search space: 2971319121
Effective search space used: 2971319121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.2 bits)