RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13311
         (873 letters)



>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
           domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 32.8 bits (75), Expect = 0.072
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 4   ACCRFLCYFCRTSRQNQKAMFDHLSFLLENSNILL 38
            C R L +  +  R+NQ+ +     F+ +     +
Sbjct: 120 LCYRVLRHSQQDYRKNQEYIAKQFGFMQKQIGYDV 154


>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 100

 Score = 29.5 bits (66), Expect = 0.47
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 363 EPQSKHKENGEEPEKPGVFKKFYNFVNAVKELEEDPKVE 401
            P  + KE   +P K   F +       + E+E +P V+
Sbjct: 64  FPYEESKEKFGKPNKRKGFSE------GLWEIENNPTVK 96


>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546)
           {Staphylococcus aureus [TaxId: 1280]}
          Length = 380

 Score = 30.5 bits (68), Expect = 0.81
 Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 12/164 (7%)

Query: 621 REMQNMAERLAENSHDIW--AKKKKEESGGSVHPQLVPYDLLTDKEKKKDRERSQEFLKY 678
             ++     LA+  +  W    K  E+    +         +  +   +  +  +  L  
Sbjct: 167 FSLKGALWTLAQEVYQEWYLGSKLYEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLND 226

Query: 679 LQYQGYKLRSIARRGKNESLRARAILRSLVPLEDLQGVLSLRFSIACPGPGEEKAKSDMP 738
           L+  G++L      G+  +        +L       G+L    +       +     +M 
Sbjct: 227 LKGAGFELGIAT--GRPYTE-TVVPFENL-------GLLPYFEADFIATASDVLEAENMY 276

Query: 739 SGLIPGHKQSVVLFLERVYGIETQDLFFRILEEAFLPDLRTATM 782
               P  K +   ++  +YG         I ++  + +     +
Sbjct: 277 PQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFI 320


>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
           [TaxId: 162425]}
          Length = 519

 Score = 30.7 bits (69), Expect = 0.83
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 25/117 (21%)

Query: 382 KKFYNFVNAVKELEEDPKVEPEPEKKTPEVLSRPSLRGSTPLDVAYSSVMENTELALALR 441
           +++++ V AVK   +D +        T E +     RG+    + Y S ++  +L   L 
Sbjct: 8   QRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIVA--KRGNLK--IEYPSNVQAKKLWGILE 63

Query: 442 EHYLEKI---------------------AIYLSRCGLQSNSELVEKGYPDLGWDPVE 477
            ++  K                       +Y+S     S +   ++  PDL   P+ 
Sbjct: 64  RNFKNKEASFTYGCLDPTMVTQMAKYLDTVYVSGWQSSSTASSTDEPSPDLADYPMN 120


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 28.6 bits (63), Expect = 3.6
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 423 LDVAYSSVME-NTELALALREHYLEKIAIYLSRCGLQSNSELVEKGYPDLGWDPVEGERY 481
           LD+      + N    LA  + Y  ++ +   R  +++      K               
Sbjct: 336 LDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER-------C 388

Query: 482 LDFLRFCVWVNGESVEENANLVIRLLIRRPECLGPALRGEGEGLLQAIIEANKMSDRIAA 541
           +  L   +      V + A +VIR + R+     P      E ++  + E     D   A
Sbjct: 389 VSTLLDLIQTKVNYVVQEAIVVIRDIFRK----YPNKY---ESIIATLCENLDSLDEPDA 441

Query: 542 RRSII 546
           R ++I
Sbjct: 442 RAAMI 446


>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 26.7 bits (59), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 107 GLLHMKMAEGA--KLQMCYLLHHLCDI 131
           GL HM++ EG    LQ+  +L  +  +
Sbjct: 63  GLTHMRILEGVGTYLQLASMLAKIHKL 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,205,533
Number of extensions: 155384
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 452
Number of HSP's successfully gapped: 11
Length of query: 873
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 780
Effective length of database: 1,130,706
Effective search space: 881950680
Effective search space used: 881950680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)