Query psy13312
Match_columns 67
No_of_seqs 69 out of 71
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 16:18:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d8d_A Amyloid beta A4 precurs 53.4 19 0.00066 23.8 4.1 20 30-49 55-74 (148)
2 3e8v_A Possible transglutamina 24.4 58 0.002 19.5 2.5 13 40-52 4-16 (82)
3 1ts9_A Ribonuclease P protein 24.0 1.3E+02 0.0044 18.3 4.5 26 24-49 36-61 (102)
4 3no2_A Uncharacterized protein 23.8 1.2E+02 0.0042 19.7 4.3 31 22-52 39-69 (276)
5 1t0p_B ICAM-3, intercellular a 23.5 44 0.0015 20.1 1.9 28 14-41 45-72 (86)
6 3kvp_A Uncharacterized protein 18.1 1.3E+02 0.0043 17.9 3.0 23 26-48 25-47 (72)
7 1xff_A D-fructose-6-, glucosam 16.8 2.1E+02 0.0071 18.7 4.3 30 24-53 202-231 (240)
8 2yma_A YOS9P, protein OS-9 hom 14.0 1E+02 0.0036 20.8 2.2 25 41-65 89-121 (161)
9 2a98_A Inositol 1,4,5-trisphos 13.2 1.2E+02 0.0041 21.2 2.4 19 28-46 193-215 (259)
10 1vq8_K 50S ribosomal protein L 12.5 2.6E+02 0.0089 17.9 3.7 37 16-52 65-106 (132)
No 1
>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A
Probab=53.39 E-value=19 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=18.2
Q ss_pred CCeEEEEeCCeEEEEcCcce
Q psy13312 30 KDSILVCYGKSSGLEPITCL 49 (67)
Q Consensus 30 rDtvLVc~d~~VkiVnl~G~ 49 (67)
+|.+|+.-++.|++++.+.+
T Consensus 55 q~~~L~v~~~tlrLvD~~tk 74 (148)
T 3d8d_A 55 KDLLLQLEDETLKLVEPQSQ 74 (148)
T ss_dssp CEEEEEEETTEEEEECTTTC
T ss_pred ceEEEEEcCCeEEEecCCCC
Confidence 58999999999999999884
No 2
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=24.36 E-value=58 Score=19.49 Aligned_cols=13 Identities=8% Similarity=-0.176 Sum_probs=11.5
Q ss_pred eEEEEcCcceecc
Q psy13312 40 SSGLEPITCLQAQ 52 (67)
Q Consensus 40 ~VkiVnl~G~~~~ 52 (67)
.|++++.+|+|.+
T Consensus 4 ~v~V~d~~GkPV~ 16 (82)
T 3e8v_A 4 SVLVTDAEGQPVA 16 (82)
T ss_dssp EEEEECTTSCBCT
T ss_pred EEEEEcCCCCCCC
Confidence 5899999999887
No 3
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=23.99 E-value=1.3e+02 Score=18.32 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=21.0
Q ss_pred EEEeccCCeEEEEeCCeEEEEcCcce
Q psy13312 24 NVTQLDKDSILVCYGKSSGLEPITCL 49 (67)
Q Consensus 24 ~VtQLdrDtvLVc~d~~VkiVnl~G~ 49 (67)
.|.+--++|+.|.-++.++.|...|.
T Consensus 36 iVV~ETkntf~I~t~~~~k~VPK~~~ 61 (102)
T 1ts9_A 36 EVVDETQNTLKIMTEKGLKVVAKRGR 61 (102)
T ss_dssp EEEEECSSEEEEEESSSEEEEECTTC
T ss_pred EEEEeccceEEEEeCCcEEEEECCCE
Confidence 47788899998888888999887663
No 4
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=23.83 E-value=1.2e+02 Score=19.71 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=24.1
Q ss_pred eEEEEeccCCeEEEEeCCeEEEEcCcceecc
Q psy13312 22 IINVTQLDKDSILVCYGKSSGLEPITCLQAQ 52 (67)
Q Consensus 22 vv~VtQLdrDtvLVc~d~~VkiVnl~G~~~~ 52 (67)
+-.+.......+|++.++.|..+|.+|+..-
T Consensus 39 ~~~~~~~pdG~ilvs~~~~V~~~d~~G~~~W 69 (276)
T 3no2_A 39 CNSVAATKAGEILFSYSKGAKMITRDGRELW 69 (276)
T ss_dssp CCEEEECTTSCEEEECBSEEEEECTTSCEEE
T ss_pred CcCeEECCCCCEEEeCCCCEEEECCCCCEEE
Confidence 3345566677899999999999999996443
No 5
>1t0p_B ICAM-3, intercellular adhesion molecule-3, ICAM-R, CDW50, CD50 antigen; rossmann fold, IG-super family domain, immune system; HET: NAG; 1.66A {Homo sapiens}
Probab=23.50 E-value=44 Score=20.11 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=21.0
Q ss_pred ecCCCccceEEEEeccCCeEEEEeCCeE
Q psy13312 14 VPRRENLNIINVTQLDKDSILVCYGKSS 41 (67)
Q Consensus 14 ~~~~~~l~vv~VtQLdrDtvLVc~d~~V 41 (67)
+.++.+-.+-+|.=+-.|+.++||-+|-
T Consensus 45 ~~~g~~Wk~f~lsnv~~ds~~~C~~~C~ 72 (86)
T 1t0p_B 45 VASGMGWAAFNLSNVTGNSRILCSVYCN 72 (86)
T ss_dssp EEEETTEEEEEEECCCSCEEEEEEEEET
T ss_pred ccCCCCeEEEEEeccCcCCEEEEEEEcC
Confidence 3445566677777778899999998873
No 6
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=18.11 E-value=1.3e+02 Score=17.89 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=20.2
Q ss_pred EeccCCeEEEEeCCeEEEEcCcc
Q psy13312 26 TQLDKDSILVCYGKSSGLEPITC 48 (67)
Q Consensus 26 tQLdrDtvLVc~d~~VkiVnl~G 48 (67)
+||+.++.=|.-++.+||---+-
T Consensus 25 vqLe~nhFgv~e~g~iKIykyde 47 (72)
T 3kvp_A 25 FPLEHNHFGVMEDGYIKIYEYNE 47 (72)
T ss_dssp EECSTTEEEEEETTEEEEEEEET
T ss_pred eeecCCEEEEEeCCEEEEEEeCC
Confidence 99999999999999999975443
No 7
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=16.79 E-value=2.1e+02 Score=18.70 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=25.3
Q ss_pred EEEeccCCeEEEEeCCeEEEEcCcceeccc
Q psy13312 24 NVTQLDKDSILVCYGKSSGLEPITCLQAQS 53 (67)
Q Consensus 24 ~VtQLdrDtvLVc~d~~VkiVnl~G~~~~k 53 (67)
.+..|+...+++.-.+.+++.+++|.+..+
T Consensus 202 ~~~~l~pG~~~~i~~~~~~~~~~~~~~~~~ 231 (240)
T 1xff_A 202 RFIFLEEGDIAEITRRSVNIFDKTGAEVKR 231 (240)
T ss_dssp EEEECCTTCEEEECSSCEEEECTTCCEECC
T ss_pred eEEEECCCEEEEEECCeEEEEeCCCCCccc
Confidence 477999999999988999999999976543
No 8
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=13.98 E-value=1e+02 Score=20.76 Aligned_cols=25 Identities=12% Similarity=-0.004 Sum_probs=17.1
Q ss_pred EEEEcCcceecc--------cceeeeeeeeeec
Q psy13312 41 SGLEPITCLQAQ--------SIYQESKFTLSLE 65 (67)
Q Consensus 41 VkiVnl~G~~~~--------kl~sel~FdF~IE 65 (67)
+.|||+.|...- +..+++.||..+|
T Consensus 89 adVVD~~G~~lt~l~l~i~~~~~AeI~~d~~l~ 121 (161)
T 2yma_A 89 AEVVDMKDRFQTTLSLNILNSQRAEIFFNKTFT 121 (161)
T ss_dssp EEEECTTCCEEEEEEEEECSSSCEEEEEETTCC
T ss_pred EEEEecCCCEEEEEEEEecCCCeEEEEEeeeEE
Confidence 679999996443 2246888887665
No 9
>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens}
Probab=13.21 E-value=1.2e+02 Score=21.17 Aligned_cols=19 Identities=11% Similarity=0.051 Sum_probs=14.8
Q ss_pred ccCCeEEEEeCCe----EEEEcC
Q psy13312 28 LDKDSILVCYGKS----SGLEPI 46 (67)
Q Consensus 28 LdrDtvLVc~d~~----VkiVnl 46 (67)
+=.-|||++||+. |++||.
T Consensus 193 f~sSSLL~vYD~~~~~~v~lIDF 215 (259)
T 2a98_A 193 VVGSSLLFVHDHTGLAKVWMIDF 215 (259)
T ss_dssp ECSCEEEEEECTTSCEEEEEECC
T ss_pred EEeeeEEEEEeCCCcCcEEEEEC
Confidence 3467999999975 777875
No 10
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=12.52 E-value=2.6e+02 Score=17.90 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=24.8
Q ss_pred CCCccceEEEEec----cCCeEEEEe-CCeEEEEcCcceecc
Q psy13312 16 RRENLNIINVTQL----DKDSILVCY-GKSSGLEPITCLQAQ 52 (67)
Q Consensus 16 ~~~~l~vv~VtQL----drDtvLVc~-d~~VkiVnl~G~~~~ 52 (67)
|.+-..+|-|.|= -+|-..+-| ||.+.|+|.+|+|+-
T Consensus 65 kg~v~~AVIVRtkk~~rR~dG~~i~FddNA~Vlin~~g~p~G 106 (132)
T 1vq8_K 65 RRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRG 106 (132)
T ss_dssp TTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECTTSCBSS
T ss_pred CCcEEEEEEEEcCCCcCcCCCcEEEeCCceEEEECCCCCEeE
Confidence 5555666667653 223344555 599999999998765
Done!