Query psy13312
Match_columns 67
No_of_seqs 69 out of 71
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 16:19:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2auwa2 d.331.1.1 (A:4-87) Hyp 42.1 24 0.0017 19.3 4.4 31 20-50 4-35 (84)
2 d1fmta1 b.46.1.1 (A:207-314) M 24.6 42 0.003 18.1 3.4 36 12-47 45-81 (108)
3 d1zxqa2 b.1.1.4 (A:1-86) Inter 22.4 23 0.0017 19.8 2.0 29 13-41 44-72 (86)
4 d1iama2 b.1.1.4 (A:1-82) Inter 21.2 21 0.0015 20.1 1.5 28 14-41 43-70 (82)
5 d2bhma1 d.17.4.26 (A:97-235) T 15.0 1E+02 0.0073 17.2 3.8 44 20-63 67-111 (139)
6 d1gm5a3 c.37.1.19 (A:286-549) 14.5 8.9 0.00065 25.1 -1.4 11 9-19 237-247 (264)
7 d1j0ha2 b.71.1.1 (A:506-588) N 14.3 81 0.0059 15.7 4.0 28 12-39 4-32 (83)
8 d1w8oa3 b.68.1.1 (A:47-402) Mi 14.0 63 0.0046 18.9 2.6 18 22-39 324-341 (356)
9 d1snoa_ b.40.1.1 (A:) Staphylo 12.8 86 0.0063 17.0 2.9 24 26-49 11-34 (136)
10 d1g47a1 g.39.1.3 (A:1-35) Pinc 12.5 16 0.0012 17.8 -0.4 11 40-50 20-30 (35)
No 1
>d2auwa2 d.331.1.1 (A:4-87) Hypothetical protein NE0471 N-terminal domain {Nitrosomonas europaea [TaxId: 915]}
Probab=42.07 E-value=24 Score=19.29 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=27.1
Q ss_pred cceEEEEeccCCeEEEEeC-CeEEEEcCccee
Q psy13312 20 LNIINVTQLDKDSILVCYG-KSSGLEPITCLQ 50 (67)
Q Consensus 20 l~vv~VtQLdrDtvLVc~d-~~VkiVnl~G~~ 50 (67)
+++++|.-++.=++.|-++ +..+++|+...+
T Consensus 4 pkv~~V~~l~~y~L~v~F~dG~~~~~Dl~~~l 35 (84)
T d2auwa2 4 PKLTAVEALAPYRLRTTWSTGEVLEVDVGDIL 35 (84)
T ss_dssp CCEEEEEECSTTEEEEEETTSCEEEEECHHHH
T ss_pred cceEEEEECCCcEEEEEEcCCCEEEEEhHHhh
Confidence 5789999999999999997 899999987643
No 2
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.56 E-value=42 Score=18.14 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=24.3
Q ss_pred eeecCCCccceEEEEeccCCeEEEE-eCCeEEEEcCc
Q psy13312 12 TMVPRRENLNIINVTQLDKDSILVC-YGKSSGLEPIT 47 (67)
Q Consensus 12 t~~~~~~~l~vv~VtQLdrDtvLVc-~d~~VkiVnl~ 47 (67)
.+.+......+-.|.+++++.++|| -|+++.|-.+|
T Consensus 45 ~~~~~~~~~~pG~v~~~~~~~i~v~~~dg~l~I~~vq 81 (108)
T d1fmta1 45 SVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQ 81 (108)
T ss_dssp EEECCCCCSCTTBEEEEETTEEEEECSBSEEEEEEEE
T ss_pred EEeeeccccccceEEEECCCcEEEEeCCceEEEEEEE
Confidence 3444444455667888899988765 56888886654
No 3
>d1zxqa2 b.1.1.4 (A:1-86) Intercellular adhesion molecule-2, ICAM-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.37 E-value=23 Score=19.84 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=21.7
Q ss_pred eecCCCccceEEEEeccCCeEEEEeCCeE
Q psy13312 13 MVPRRENLNIINVTQLDKDSILVCYGKSS 41 (67)
Q Consensus 13 ~~~~~~~l~vv~VtQLdrDtvLVc~d~~V 41 (67)
...++.+-...++.=+..|+.++||-+|-
T Consensus 44 ~~~~G~~Wk~f~l~nvs~d~~~~C~~~C~ 72 (86)
T d1zxqa2 44 LLDEQAQWKHYLVSNISHDTVLQCHFTCS 72 (86)
T ss_dssp EEEEETTEEEEEEEEECSCEEEEEEEEET
T ss_pred cccCCCCEEEEEccccccCCcEEEEEEcC
Confidence 34445555667777888999999998874
No 4
>d1iama2 b.1.1.4 (A:1-82) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.23 E-value=21 Score=20.07 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=21.3
Q ss_pred ecCCCccceEEEEeccCCeEEEEeCCeE
Q psy13312 14 VPRRENLNIINVTQLDKDSILVCYGKSS 41 (67)
Q Consensus 14 ~~~~~~l~vv~VtQLdrDtvLVc~d~~V 41 (67)
..++.+-..-++.=+..|+.+.||-+|-
T Consensus 43 l~~g~~Wk~f~LsnV~~ds~~~C~~~C~ 70 (82)
T d1iama2 43 LLPGNNRKVYELSNVQEDSQPMCYSNCP 70 (82)
T ss_dssp CSSSSSEEEEEEEEECSCBCCEEEEECS
T ss_pred cCCCCCEEEEEEecccCCCEEEEEEEcC
Confidence 4566666677777777899999998873
No 5
>d2bhma1 d.17.4.26 (A:97-235) Type IV secretion system protein VirB8 {Brucella melitensis [TaxId: 29459]}
Probab=15.02 E-value=1e+02 Score=17.18 Aligned_cols=44 Identities=11% Similarity=0.046 Sum_probs=27.4
Q ss_pred cceEEEEeccCCeEEEEeCCeEEEEcCcceecc-cceeeeeeeee
Q psy13312 20 LNIINVTQLDKDSILVCYGKSSGLEPITCLQAQ-SIYQESKFTLS 63 (67)
Q Consensus 20 l~vv~VtQLdrDtvLVc~d~~VkiVnl~G~~~~-kl~sel~FdF~ 63 (67)
..++.+..+.+++-.|-+.+++.-.+-.|.+.. ...+-++|.|.
T Consensus 67 V~I~Si~~~~~~~aqVrf~~t~~~~~~~~~~~~~~w~atvt~~y~ 111 (139)
T d2bhma1 67 VTIVSIVPNGKGIGTVRFAKTTKRTNETGDGETTHWIATIGYQYV 111 (139)
T ss_dssp EEEEEEEECSSSEEEEEEEEEEEC----CCCEEEEEEEEEEEEEC
T ss_pred EEEEEeeecCCcEEEEEEEEEEEEcCCCCccceEEEEEEEEEEee
Confidence 346678899999999988777655554443332 34567777764
No 6
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=14.54 E-value=8.9 Score=25.13 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=8.8
Q ss_pred CcceeecCCCc
Q psy13312 9 GTATMVPRREN 19 (67)
Q Consensus 9 g~~t~~~~~~~ 19 (67)
++|||+||+-.
T Consensus 237 ~SATPiprtl~ 247 (264)
T d1gm5a3 237 MSATPIPRSMA 247 (264)
T ss_dssp EESSCCCHHHH
T ss_pred EECCCCHHHHH
Confidence 48999999754
No 7
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.28 E-value=81 Score=15.73 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=18.8
Q ss_pred eeecCCCccceEE-EEeccCCeEEEEeCC
Q psy13312 12 TMVPRRENLNIIN-VTQLDKDSILVCYGK 39 (67)
Q Consensus 12 t~~~~~~~l~vv~-VtQLdrDtvLVc~d~ 39 (67)
+.+.-.+..++.. ..+.+.+++||++..
T Consensus 4 ~~l~~~d~~~v~ay~R~~~~~~vLVv~N~ 32 (83)
T d1j0ha2 4 SFLHADDEMNYLIYKKTDGDETVLVIINR 32 (83)
T ss_dssp EEECCSCTTTEEEEEEECSSCEEEEEEEC
T ss_pred EEEecCCCCCEEEEEEECCCCEEEEEEeC
Confidence 4444445555555 668899999998763
No 8
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]}
Probab=14.02 E-value=63 Score=18.90 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=15.0
Q ss_pred eEEEEeccCCeEEEEeCC
Q psy13312 22 IINVTQLDKDSILVCYGK 39 (67)
Q Consensus 22 vv~VtQLdrDtvLVc~d~ 39 (67)
--.++|+++.+|+++||+
T Consensus 324 Ys~~~~~~dg~i~~~ye~ 341 (356)
T d1w8oa3 324 YSTLTALPDGTYGLLYEP 341 (356)
T ss_dssp CEEEEECTTSCEEEEECC
T ss_pred CceeEEcCCCEEEEEEEC
Confidence 346789999999999995
No 9
>d1snoa_ b.40.1.1 (A:) Staphylococcal nuclease {Staphylococcus aureus [TaxId: 1280]}
Probab=12.80 E-value=86 Score=17.01 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=17.8
Q ss_pred EeccCCeEEEEeCCeEEEEcCcce
Q psy13312 26 TQLDKDSILVCYGKSSGLEPITCL 49 (67)
Q Consensus 26 tQLdrDtvLVc~d~~VkiVnl~G~ 49 (67)
.=+|-|||.|..++.-.-|-|-|.
T Consensus 11 ~V~DGDT~~v~~~~~~~~vRL~GI 34 (136)
T d1snoa_ 11 KAIDGDTVKLMYKGQPMTFRLLLV 34 (136)
T ss_dssp EECSSSEEEEEETTEEEEEEETTE
T ss_pred EEEcCCEEEEEeCCcEEEEEEEEE
Confidence 457999999998876555666663
No 10
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.55 E-value=16 Score=17.82 Aligned_cols=11 Identities=0% Similarity=-0.224 Sum_probs=7.8
Q ss_pred eEEEEcCccee
Q psy13312 40 SSGLEPITCLQ 50 (67)
Q Consensus 40 ~VkiVnl~G~~ 50 (67)
.=||||-+|++
T Consensus 20 ~EkiVNSnGEl 30 (35)
T d1g47a1 20 AEKIVNSNGEL 30 (35)
T ss_dssp TTTCEEETTEE
T ss_pred hHHhhcCCCcc
Confidence 34788888863
Done!