RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy13312
         (67 letters)



>gnl|CDD|216115 pfam00780, CNH, CNH domain.  Domain found in NIK1-like kinase,
           mouse citron and yeast ROM1, ROM2. Unpublished
           observations.
          Length = 266

 Score = 33.4 bits (77), Expect = 0.003
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 5   SLDDGTATMVPRRENLNIINVTQLDKDSILVCY 37
              D +     R+ENL  + V +L  D  L+CY
Sbjct: 165 DPADQSLDFAARKENLKPLAVVRLSDDEFLLCY 197


>gnl|CDD|149504 pfam08475, Baculo_VP91_N, Viral capsid protein 91 N-terminal.  This
           domain is found in Baculoviridae including the
           nucleopolyhedrovirus at the N-terminus of the viral
           capsid protein 91 (VP91).
          Length = 185

 Score = 26.8 bits (60), Expect = 0.65
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 7   DDGTATM-VPRRENLNIINVTQLDKDSILVCYGKSSGLEPIT 47
           DDG   M  P  E  +     QL    I  C GK  G  P+T
Sbjct: 120 DDGWVEMECPANERFD---GNQLQCVPIPPCDGKPPGNLPLT 158


>gnl|CDD|185583 PTZ00375, PTZ00375, dihydroxyacetone kinase-like protein;
          Provisional.
          Length = 584

 Score = 26.7 bits (59), Expect = 0.81
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 14 VPRRENLNIINVTQLDKDSILVCYGKSSGLEP 45
          + R EN N++  + +DK  +L+  G  SG EP
Sbjct: 29 LKRIENTNVVVRSDIDKTKVLLISGGGSGHEP 60


>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
           Family 4; Alpha-glucosidases and alpha-galactosidases.
           Glucosidases cleave glycosidic bonds to release glucose
           from oligosaccharides. Alpha-glucosidases and
           alpha-galactosidases release alpha-D-glucose and
           alpha-D-galactose, respectively, via the hydrolysis of
           alpha-glycopyranoside bonds. Some bacteria
           simultaneously translocate and phosphorylate
           disaccharides via the phosphoenolpyruvate-dependent
           phosphotransferase system (PEP-PTS). After
           translocation, these phospho-disaccharides may be
           hydrolyzed by the GH4 glycoside hydrolases such as the
           alpha-glucosidases. Other organsisms (such as archaea
           and Thermotoga maritima) lack the PEP-PTS system, but
           have several enzymes normally associated with the
           PEP-PTS operon. Alpha-glucosidases and
           alpha-galactosidases are part of the NAD(P)-binding
           Rossmann fold superfamily, which includes a wide variety
           of protein families including the NAD(P)-binding domains
           of alcohol dehydrogenases, tyrosine-dependent
           oxidoreductases, glyceraldehyde-3-phosphate
           dehydrogenases, formate/glycerate dehydrogenases,
           siroheme synthases, 6-phosphogluconate dehydrogenases,
           aminoacid dehydrogenases, repressor rex, and NAD-binding
           potassium channel domains, among others.
          Length = 423

 Score = 24.8 bits (55), Expect = 3.6
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 5/37 (13%)

Query: 15  PRRENLNIIN---VTQLDKDSI--LVCYGKSSGLEPI 46
           PRR N N+ N   +  L  D +  +      +G+ P 
Sbjct: 325 PRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPE 361


>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine
           triphosphatases (GTPases)-like.  Rho4 is a GTPase that
           controls septum degradation by regulating secretion of
           Eng1 or Agn1 during cytokinesis. Rho4 also plays a role
           in cell morphogenesis. Rho4 regulates septation and cell
           morphology by controlling the actin cytoskeleton and
           cytoplasmic microtubules. The localization of Rho4 is
           modulated by Rdi1, which may function as a GDI, and by
           Rga9, which is believed to function as a GAP. In S.
           pombe, both Rho4 deletion and Rho4 overexpression result
           in a defective cell wall, suggesting a role for Rho4 in
           maintaining cell wall integrity. Most Rho proteins
           contain a lipid modification site at the C-terminus,
           with a typical sequence motif CaaX, where a = an
           aliphatic amino acid and X = any amino acid. Lipid
           binding is essential for membrane attachment, a key
           feature of most Rho proteins.
          Length = 197

 Score = 24.6 bits (54), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 26  TQLDKDSILVCYGKSSGLEPITCLQAQSIYQE 57
           T L KD   V   ++ GLEP+T  Q +S+ + 
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKS 149


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.313    0.129    0.350 

Gapped
Lambda     K      H
   0.267   0.0763    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,977,515
Number of extensions: 195136
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 5
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)