BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13314
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G43|E Chain E, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
pdb|3G43|F Chain F, Crystal Structure Of The Calmodulin-Bound Cav1.2
C-Terminal Regulatory Domain Dimer
Length = 81
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 108 TTMFALIRENLSIKMRCADEMDQADEELRDTIRSIWPIESKKMLNLLLP 156
+T+FAL+R L IK ++QA+EELR I+ IW S K+L+ ++P
Sbjct: 5 STLFALVRTALRIK--TEGNLEQANEELRAIIKKIWKRTSMKLLDQVVP 51
>pdb|3OXQ|E Chain E, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
pdb|3OXQ|F Chain F, Crystal Structure Of Ca2+CAM-Cav1.2 Pre-IqIQ DOMAIN
COMPLEX
Length = 78
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 109 TMFALIRENLSIKMRCADEMDQADEELRDTIRSIWPIESKKMLNLLLP 156
T+FAL+R L IK ++QA+EELR I+ IW S K+L+ ++P
Sbjct: 2 TLFALVRTALRIK--TEGNLEQANEELRAIIKKIWKRTSMKLLDQVVP 47
>pdb|2KAV|A Chain A, Solution Structure Of The Human Voltage-Gated Sodium
Channel, Brain Isoform (Nav1.2)
Length = 129
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 25 DNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCP 83
+NF T +S+ L + F +W ++DP+AT I + + + ++PPL P
Sbjct: 24 ENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAK--P 81
Query: 84 DRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLS 119
+++ +LI M++P+ + +FA + L
Sbjct: 82 NKV---QLIAMDLPMVSGDRIHCLDILFAFTKRVLG 114
>pdb|2KBI|A Chain A, Solution Nmr Structure Of The C-Terminal Ef-Hand Domain Of
Human Cardiac Sodium Channel Nav1.5
Length = 97
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 25 DNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCP 83
+NF T +S+ L D F IW ++DP AT I Y + + PL P
Sbjct: 5 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAK--P 62
Query: 84 DRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENL 118
++++ LI M++P+ + +FA + L
Sbjct: 63 NQIS---LINMDLPMVSGDRIHCMDILFAFTKRVL 94
>pdb|4DCK|A Chain A, Crystal Structure Of The C-Terminus Of Voltage-Gated
Sodium Channel In Complex With Fgf13 And Cam
Length = 168
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 25 DNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCP 83
+NF T +S+ L D F IW ++DP AT I Y + + PL P
Sbjct: 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAK--P 58
Query: 84 DRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENL 118
++++ LI M++P+ + +FA + L
Sbjct: 59 NQIS---LINMDLPMVSGDRIHCMDILFAFTKRVL 90
>pdb|2BE4|A Chain A, X-ray Structure An Ef-hand Protein From Danio Rerio
Dr.36843
pdb|2Q4U|A Chain A, Ensemble Refinement Of The Crystal Structure Of An Ef-Hand
Protein From Danio Rerio Dr.36843
Length = 272
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
EF +IW +YD +++G I E L+++
Sbjct: 105 EFXKIWRKYDADSSGYISAAELKNFLKDL 133
>pdb|1K9U|A Chain A, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
pdb|1K9U|B Chain B, Crystal Structure Of The Calcium-Binding Pollen Allergen
Phl P 7 (Polcalcin) At 1.75 Angstroem
Length = 78
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
D+ RI+ +D N GKI E + LR +
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTL 32
>pdb|2LVI|A Chain A, Solution Structure Of Apo-phl P 7
pdb|2LVJ|A Chain A, Solution Structure Of Hemi-mg-bound Phl P 7
pdb|2LVK|A Chain A, Solution Structure Of Ca-bound Phl P 7
Length = 77
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
D+ RI+ +D N GKI E + LR +
Sbjct: 2 DDMERIFKRFDTNGDGKISLSELTDALRTL 31
>pdb|2GV5|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|D Chain D, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2GV5|E Chain E, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|A Chain A, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|B Chain B, Crystal Structure Of Sfi1pCDC31P COMPLEX
pdb|2DOQ|C Chain C, Crystal Structure Of Sfi1pCDC31P COMPLEX
Length = 161
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 25 DNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLG 77
D+F Y+ IL LDE R + +D + TGKI +++ LR + LG
Sbjct: 79 DDF-YIVXGEKILKRDPLDEIKRAFQLFDDDHTGKI----SIKNLRRVAKELG 126
>pdb|3FWB|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|A Chain A, Sac3:sus1:cdc31 Complex
pdb|3FWC|E Chain E, Sac3:sus1:cdc31 Complex
pdb|3FWC|I Chain I, Sac3:sus1:cdc31 Complex
pdb|3FWC|M Chain M, Sac3:sus1:cdc31 Complex
Length = 161
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 25 DNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLG 77
D+F Y+ IL LDE R + +D + TGKI +++ LR + LG
Sbjct: 79 DDF-YIVMGEKILKRDPLDEIKRAFQLFDDDHTGKI----SIKNLRRVAKELG 126
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 33 DSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
DSSI ++E I + D N G++ + E VEML+N
Sbjct: 447 DSSI----QMEELESIIEQVDNNKDGEVDFNEFVEMLQNF 482
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 18/75 (24%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQ 102
+EF++ W +YD + +G I +E L+++ L + N +D+ +
Sbjct: 103 EEFMKTWRKYDTDHSGFIETEELKNFLKDL------------------LEKANKTVDDTK 144
Query: 103 SVQFTTTMFALIREN 117
++T M L N
Sbjct: 145 LAEYTDLMLKLFDSN 159
>pdb|3PM8|A Chain A, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
pdb|3PM8|B Chain B, Cad Domain Of Pff0520w, Calcium Dependent Protein Kinase
Length = 197
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 17 NLFVAVIMDNFDYLTRDSSILGAHHLD------EFVRIWAEYDPNATGKIHYKE 64
N+F+A+ +DN L+ + G + + ++ + D NA+G+IHY +
Sbjct: 61 NIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTD 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,495,388
Number of Sequences: 62578
Number of extensions: 164702
Number of successful extensions: 434
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 15
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)