Query psy13314
Match_columns 161
No_of_seqs 118 out of 403
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 16:20:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301|consensus 100.0 1.8E-32 3.8E-37 262.8 9.3 153 2-159 1375-1529(1592)
2 COG5126 FRQ1 Ca2+-binding prot 99.1 1.4E-09 3E-14 83.3 9.6 76 35-119 12-87 (160)
3 KOG0027|consensus 99.0 2.8E-09 6.1E-14 80.1 9.7 75 37-119 2-76 (151)
4 cd00213 S-100 S-100: S-100 dom 98.7 7.6E-08 1.7E-12 65.9 7.3 76 39-118 4-82 (88)
5 cd05025 S-100A1 S-100A1: S-100 98.7 7.2E-08 1.6E-12 66.8 7.1 75 41-119 7-84 (92)
6 cd05027 S-100B S-100B: S-100B 98.7 1.3E-07 2.9E-12 65.4 8.2 76 40-119 5-83 (88)
7 cd05022 S-100A13 S-100A13: S-1 98.7 8.5E-08 1.8E-12 66.7 7.2 73 40-119 5-79 (89)
8 PF14658 EF-hand_9: EF-hand do 98.7 9.6E-08 2.1E-12 62.8 6.6 62 48-116 3-65 (66)
9 smart00027 EH Eps15 homology d 98.6 3.2E-07 7E-12 64.0 8.6 70 36-115 3-72 (96)
10 KOG0027|consensus 98.6 2.2E-07 4.7E-12 69.8 7.3 67 41-115 83-149 (151)
11 cd05026 S-100Z S-100Z: S-100Z 98.6 3E-07 6.4E-12 64.2 7.1 76 40-119 7-85 (93)
12 PF13499 EF-hand_7: EF-hand do 98.5 1.1E-07 2.3E-12 61.4 3.9 65 45-113 2-66 (66)
13 KOG0028|consensus 98.5 1.4E-06 3E-11 66.6 9.3 76 36-119 26-101 (172)
14 cd05031 S-100A10_like S-100A10 98.5 7.1E-07 1.5E-11 62.0 6.8 74 41-118 6-82 (94)
15 cd05029 S-100A6 S-100A6: S-100 98.3 3.5E-06 7.7E-11 58.3 7.5 75 40-119 7-83 (88)
16 KOG0041|consensus 98.2 3.3E-06 7.3E-11 66.8 6.4 71 37-115 93-163 (244)
17 cd00052 EH Eps15 homology doma 98.2 6.7E-06 1.5E-10 52.5 6.4 64 45-118 1-64 (67)
18 PTZ00183 centrin; Provisional 98.2 1.3E-05 2.7E-10 59.3 8.5 73 36-116 10-82 (158)
19 COG5126 FRQ1 Ca2+-binding prot 98.1 1.2E-05 2.6E-10 61.6 7.3 67 41-115 90-156 (160)
20 PTZ00184 calmodulin; Provision 98.1 2E-05 4.4E-10 57.3 8.3 71 37-115 5-75 (149)
21 KOG0031|consensus 98.1 3.7E-05 8E-10 58.5 9.4 73 36-120 25-97 (171)
22 cd05023 S-100A11 S-100A11: S-1 98.0 4.6E-05 1E-09 52.8 7.8 77 40-119 6-84 (89)
23 cd00051 EFh EF-hand, calcium b 98.0 4.5E-05 9.7E-10 46.5 6.8 61 45-113 2-62 (63)
24 KOG0030|consensus 97.8 0.00011 2.3E-09 55.2 7.9 110 37-155 5-130 (152)
25 PLN03223 Polycystin cation cha 97.7 5.9E-05 1.3E-09 72.9 6.3 70 3-72 1398-1472(1634)
26 PF13833 EF-hand_8: EF-hand do 97.7 0.00017 3.7E-09 44.6 6.2 53 57-116 2-54 (54)
27 KOG0031|consensus 97.7 0.00017 3.7E-09 55.0 7.3 64 43-114 101-164 (171)
28 PF00036 EF-hand_1: EF hand; 97.7 5.6E-05 1.2E-09 41.8 3.3 29 44-72 1-29 (29)
29 PTZ00184 calmodulin; Provision 97.7 0.00018 3.9E-09 52.2 6.9 65 43-115 84-148 (149)
30 PTZ00183 centrin; Provisional 97.6 0.0002 4.3E-09 52.8 6.9 65 43-115 90-154 (158)
31 PF13405 EF-hand_6: EF-hand do 97.6 7E-05 1.5E-09 41.6 3.3 29 44-72 1-30 (31)
32 cd05030 calgranulins Calgranul 97.6 0.00029 6.3E-09 48.5 6.7 76 40-119 5-83 (88)
33 KOG0034|consensus 97.5 0.0006 1.3E-08 53.5 8.3 99 13-116 61-176 (187)
34 PLN02964 phosphatidylserine de 97.5 0.00066 1.4E-08 62.2 9.5 69 36-115 136-207 (644)
35 KOG0046|consensus 97.5 0.00046 1E-08 61.4 7.6 72 36-113 12-83 (627)
36 KOG0037|consensus 97.3 0.0014 3E-08 52.5 7.4 95 3-116 87-189 (221)
37 cd00252 SPARC_EC SPARC_EC; ext 97.0 0.0022 4.9E-08 46.6 6.2 65 37-113 42-106 (116)
38 cd05024 S-100A10 S-100A10: A s 96.9 0.0051 1.1E-07 42.9 7.1 74 41-119 6-80 (91)
39 KOG0030|consensus 96.9 0.0039 8.4E-08 46.9 6.5 64 42-114 87-150 (152)
40 PF12763 EF-hand_4: Cytoskelet 96.8 0.0048 1E-07 44.0 6.4 68 36-114 3-70 (104)
41 KOG0028|consensus 96.7 0.0073 1.6E-07 46.4 6.7 66 42-115 105-170 (172)
42 PLN02964 phosphatidylserine de 96.5 0.013 2.7E-07 54.0 8.4 71 38-116 174-244 (644)
43 KOG0040|consensus 96.4 0.02 4.2E-07 56.8 9.2 80 35-116 2245-2325(2399)
44 KOG0038|consensus 96.4 0.015 3.2E-07 44.3 6.8 65 46-115 111-177 (189)
45 smart00054 EFh EF-hand, calciu 96.3 0.0043 9.2E-08 31.7 2.6 28 45-72 2-29 (29)
46 KOG0036|consensus 96.1 0.04 8.7E-07 48.1 8.6 71 37-114 8-78 (463)
47 PF13202 EF-hand_5: EF hand; P 96.0 0.0091 2E-07 31.6 2.8 24 46-69 2-25 (25)
48 KOG0044|consensus 95.9 0.017 3.7E-07 45.6 5.0 69 46-115 103-175 (193)
49 PF13833 EF-hand_8: EF-hand do 94.7 0.046 1E-06 33.4 3.3 32 37-71 22-53 (54)
50 PF00036 EF-hand_1: EF hand; 93.7 0.095 2.1E-06 28.7 2.8 26 89-115 3-28 (29)
51 KOG0034|consensus 93.6 0.18 4E-06 39.6 5.5 80 37-117 27-134 (187)
52 cd05023 S-100A11 S-100A11: S-1 93.3 0.26 5.7E-06 33.9 5.3 53 20-72 8-81 (89)
53 KOG0377|consensus 92.9 0.29 6.3E-06 43.4 6.1 65 45-113 549-613 (631)
54 PRK12309 transaldolase/EF-hand 92.5 0.27 5.7E-06 42.9 5.4 53 42-115 333-385 (391)
55 cd05030 calgranulins Calgranul 92.1 0.53 1.1E-05 32.1 5.5 29 44-72 52-80 (88)
56 PF13499 EF-hand_7: EF-hand do 91.9 0.22 4.8E-06 31.4 3.2 27 43-69 40-66 (66)
57 KOG3599|consensus 91.8 0.15 3.2E-06 48.2 3.2 31 3-33 655-685 (798)
58 TIGR00870 trp transient-recept 91.7 0.18 3.8E-06 46.8 3.5 32 3-34 591-622 (743)
59 KOG2302|consensus 91.4 0.17 3.7E-06 48.9 3.1 29 2-30 1363-1391(1956)
60 KOG2301|consensus 91.4 0.25 5.4E-06 49.9 4.4 30 2-31 637-666 (1592)
61 cd05025 S-100A1 S-100A1: S-100 91.1 0.69 1.5E-05 31.4 5.3 53 20-72 8-81 (92)
62 cd05029 S-100A6 S-100A6: S-100 90.8 0.72 1.6E-05 31.6 5.1 28 45-72 53-80 (88)
63 cd05026 S-100Z S-100Z: S-100Z 90.6 0.85 1.8E-05 31.4 5.3 53 20-72 9-82 (93)
64 KOG3733|consensus 89.4 0.66 1.4E-05 41.0 4.8 43 6-48 486-529 (566)
65 cd00051 EFh EF-hand, calcium b 88.8 0.54 1.2E-05 27.8 2.9 26 44-69 37-62 (63)
66 cd00252 SPARC_EC SPARC_EC; ext 88.6 1.8 3.9E-05 31.3 6.0 54 16-69 43-106 (116)
67 KOG0044|consensus 87.6 4.2 9.1E-05 32.1 7.9 17 49-65 70-86 (193)
68 KOG0377|consensus 86.6 2.3 4.9E-05 38.0 6.3 67 42-117 463-529 (631)
69 cd05027 S-100B S-100B: S-100B 86.1 2.5 5.4E-05 28.9 5.2 28 45-72 53-80 (88)
70 KOG4065|consensus 86.0 6 0.00013 29.1 7.3 74 37-112 63-142 (144)
71 KOG4223|consensus 85.7 1.3 2.8E-05 37.6 4.3 69 42-117 162-230 (325)
72 cd00213 S-100 S-100: S-100 dom 83.4 4.5 9.7E-05 26.9 5.5 29 44-72 52-80 (88)
73 cd05024 S-100A10 S-100A10: A s 83.0 4.9 0.00011 28.0 5.6 53 20-72 7-77 (91)
74 cd05031 S-100A10_like S-100A10 81.1 1.9 4.2E-05 29.4 3.1 28 45-72 53-80 (94)
75 KOG0042|consensus 80.8 4.7 0.0001 37.0 6.0 76 36-119 586-661 (680)
76 smart00027 EH Eps15 homology d 80.8 4.9 0.00011 27.4 5.0 29 44-72 45-73 (96)
77 cd05022 S-100A13 S-100A13: S-1 79.8 2.4 5.2E-05 29.2 3.1 30 43-72 47-76 (89)
78 cd00052 EH Eps15 homology doma 79.7 2.5 5.4E-05 26.1 3.0 29 44-72 34-62 (67)
79 PRK12309 transaldolase/EF-hand 79.1 5.2 0.00011 34.9 5.7 37 36-72 350-386 (391)
80 PF10591 SPARC_Ca_bdg: Secrete 76.7 0.78 1.7E-05 33.0 -0.1 62 40-111 51-112 (113)
81 KOG0036|consensus 75.0 10 0.00022 33.6 6.2 61 44-112 83-143 (463)
82 PF14788 EF-hand_10: EF hand; 70.8 5 0.00011 25.0 2.5 27 46-72 24-50 (51)
83 PF06667 PspB: Phage shock pro 70.7 22 0.00047 23.9 5.8 45 7-51 4-50 (75)
84 KOG0035|consensus 70.2 10 0.00022 36.4 5.6 79 36-119 740-820 (890)
85 PF09068 EF-hand_2: EF hand; 69.0 4.2 9E-05 29.9 2.3 26 47-72 101-126 (127)
86 KOG0037|consensus 67.4 17 0.00036 29.4 5.5 61 43-110 57-117 (221)
87 KOG2871|consensus 67.4 11 0.00023 33.0 4.7 33 43-75 309-341 (449)
88 KOG3609|consensus 65.2 4.6 9.9E-05 38.3 2.2 31 4-34 588-618 (822)
89 KOG2243|consensus 64.7 9.2 0.0002 39.1 4.1 55 48-111 4062-4116(5019)
90 COG5607 Uncharacterized conser 64.4 70 0.0015 26.8 8.7 99 13-119 4-116 (283)
91 PF12763 EF-hand_4: Cytoskelet 63.9 9.2 0.0002 27.1 3.2 30 43-72 43-72 (104)
92 PF10788 DUF2603: Protein of u 63.0 9.3 0.0002 28.6 3.1 86 46-146 40-132 (137)
93 PF05042 Caleosin: Caleosin re 61.4 34 0.00074 26.6 6.1 38 42-79 95-135 (174)
94 PF14658 EF-hand_9: EF-hand do 58.4 17 0.00038 23.8 3.4 28 44-71 36-64 (66)
95 KOG3676|consensus 58.0 14 0.00029 35.1 3.9 29 4-32 624-652 (782)
96 PHA02053 hypothetical protein 57.8 19 0.00042 25.5 3.8 45 5-58 42-86 (115)
97 KOG4251|consensus 56.8 69 0.0015 26.7 7.4 64 42-111 100-164 (362)
98 PF08976 DUF1880: Domain of un 56.3 14 0.0003 27.0 3.0 31 83-114 4-34 (118)
99 COG4853 Uncharacterized protei 56.0 11 0.00023 30.9 2.6 74 8-81 9-109 (264)
100 PF09279 EF-hand_like: Phospho 50.3 65 0.0014 21.0 5.4 63 45-113 2-67 (83)
101 KOG4223|consensus 47.5 52 0.0011 28.1 5.5 69 42-118 76-144 (325)
102 KOG0747|consensus 39.5 2E+02 0.0043 24.6 7.7 64 95-158 210-286 (331)
103 PF03969 AFG1_ATPase: AFG1-lik 39.4 2E+02 0.0044 24.7 8.1 31 90-120 80-110 (362)
104 PHA02943 hypothetical protein; 38.1 1.1E+02 0.0023 23.6 5.4 67 42-122 77-143 (165)
105 KOG2302|consensus 37.8 24 0.00052 35.0 2.2 43 3-45 369-411 (1956)
106 PHA03164 hypothetical protein; 37.1 45 0.00097 22.6 2.9 20 5-24 46-72 (88)
107 COG4817 DNA-binding ferritin-l 35.7 43 0.00092 24.1 2.7 40 2-48 43-85 (111)
108 KOG1955|consensus 35.4 1.4E+02 0.003 27.5 6.4 70 36-115 224-293 (737)
109 KOG2562|consensus 33.6 1.2E+02 0.0025 27.4 5.7 23 51-73 323-345 (493)
110 PF07879 PHB_acc_N: PHB/PHA ac 33.1 42 0.00092 21.8 2.2 22 50-71 10-31 (64)
111 PF04676 CwfJ_C_2: Protein sim 32.5 32 0.0007 23.7 1.7 15 40-54 83-97 (98)
112 PF12486 DUF3702: ImpA domain 32.2 58 0.0013 24.6 3.2 52 39-92 65-116 (148)
113 COG2818 Tag 3-methyladenine DN 31.4 39 0.00084 26.6 2.2 86 18-115 32-122 (188)
114 KOG2643|consensus 30.6 57 0.0012 29.2 3.2 51 48-117 430-481 (489)
115 PF09069 EF-hand_3: EF-hand; 30.2 68 0.0015 22.2 3.0 30 42-72 2-31 (90)
116 TIGR01630 psiM2_ORF9 phage unc 29.9 1.2E+02 0.0025 21.9 4.5 81 40-121 30-120 (142)
117 KOG4666|consensus 28.5 1.2E+02 0.0025 26.4 4.7 27 45-71 298-324 (412)
118 CHL00129 rpl1 ribosomal protei 28.2 1.1E+02 0.0023 24.8 4.3 44 36-83 93-137 (229)
119 KOG4666|consensus 28.1 1.8E+02 0.004 25.2 5.8 99 43-149 259-366 (412)
120 KOG1029|consensus 28.0 1.2E+02 0.0026 29.3 5.0 67 37-113 189-255 (1118)
121 KOG2383|consensus 27.9 2.6E+02 0.0056 25.1 6.8 23 97-119 140-162 (467)
122 KOG2562|consensus 27.7 1.5E+02 0.0033 26.7 5.4 65 38-113 273-341 (493)
123 PF08078 PsaX: PsaX family; I 26.7 86 0.0019 18.0 2.5 16 5-22 16-31 (37)
124 PF01346 FKBP_N: Domain amino 26.4 95 0.0021 21.8 3.4 48 2-49 26-77 (124)
125 KOG1707|consensus 25.4 1E+02 0.0023 28.6 4.1 40 36-75 308-347 (625)
126 KOG4347|consensus 24.3 3.5E+02 0.0076 25.5 7.2 78 36-117 497-585 (671)
127 TIGR00624 tag DNA-3-methyladen 22.2 43 0.00094 26.1 0.9 52 17-71 29-81 (179)
128 COG1485 Predicted ATPase [Gene 22.0 5.4E+02 0.012 22.5 7.7 78 40-120 32-113 (367)
129 PF06210 DUF1003: Protein of u 22.0 1.1E+02 0.0023 21.9 2.8 11 12-22 34-44 (108)
130 KOG1688|consensus 20.5 97 0.0021 24.3 2.5 23 6-28 62-87 (188)
131 KOG0751|consensus 20.4 4E+02 0.0087 24.6 6.6 67 38-110 31-97 (694)
132 PF00404 Dockerin_1: Dockerin 20.3 1.2E+02 0.0026 15.2 2.0 18 53-70 1-18 (21)
No 1
>KOG2301|consensus
Probab=99.97 E-value=1.8e-32 Score=262.80 Aligned_cols=153 Identities=33% Similarity=0.466 Sum_probs=140.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCC
Q psy13314 2 SGATGEALANIMLMLNLFVAVIMDNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGS 80 (161)
Q Consensus 2 ~~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~~-~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~ 80 (161)
.||+||++||+||++|||||||+|||++++++.+ .++++|+++|+++|++|||++||+|++.+++.+++.|+||||++.
T Consensus 1375 ~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k 1454 (1592)
T KOG2301|consen 1375 IYFVSWILISSYIVVNLFVAVILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGK 1454 (1592)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCC
Confidence 4899999999999999999999999999998876 899999999999999999999999999999999999999999996
Q ss_pred CCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHhcccccC-ccchhHHHHHHHHHHHhhCcCccccccccccCCCC
Q psy13314 81 KCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIKMRC-ADEMDQADEELRDTIRSIWPIESKKMLNLLLPNKS 159 (161)
Q Consensus 81 ~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~~~~~~~-~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~ 159 (161)
.+|. ++++||+|+.+||+|||+|+|+|++|++++++.+- .++..|-+++++.--.+.|++..+++++.++|+++
T Consensus 1455 ~~~~-----kli~mdmp~~~gd~V~f~d~L~aL~~r~l~i~~~~~~~~~~q~e~~~~~~~~~i~~~~i~~~l~~l~~~~~ 1529 (1592)
T KOG2301|consen 1455 PNKR-----KLISMDLPMVSGDRVHCLDILFALTKRVLGIKKELDKVRELQEEEFLASIPSKISYEPITTTLKRLQEPLS 1529 (1592)
T ss_pred CCCc-----eeeeeecCcCCCCeeehhhHHHHHHHHhhcccccccHHHHHHHHHHHhhcchhhccchHHHHHHhhccchh
Confidence 4444 67889999999999999999999999999987643 35677888999999999999999999999999874
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.06 E-value=1.4e-09 Score=83.27 Aligned_cols=76 Identities=20% Similarity=0.377 Sum_probs=66.9
Q ss_pred CcCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 35 SILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 35 ~~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
..++++++++++++|..||++++|.|+.++|..+|+.+ |+ .|+..++.+|+. .+|. +.+.|+|.+||.+|.
T Consensus 12 ~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~l----g~---~~s~~ei~~l~~-~~d~-~~~~idf~~Fl~~ms 82 (160)
T COG5126 12 TQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSL----GF---NPSEAEINKLFE-EIDA-GNETVDFPEFLTVMS 82 (160)
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc----CC---CCcHHHHHHHHH-hccC-CCCccCHHHHHHHHH
Confidence 46899999999999999999999999999999999985 66 377787888886 7777 778999999999999
Q ss_pred HHHhc
Q psy13314 115 RENLS 119 (161)
Q Consensus 115 ~~~~~ 119 (161)
+....
T Consensus 83 ~~~~~ 87 (160)
T COG5126 83 VKLKR 87 (160)
T ss_pred HHhcc
Confidence 87753
No 3
>KOG0027|consensus
Probab=99.02 E-value=2.8e-09 Score=80.13 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
++.+++..++++|+.||.+++|+|+..+|..+|++| |+ .|+..++..+++ +++.+++|+|+|.+|+..|.+.
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l----g~---~~t~~el~~~~~-~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSL----GQ---NPTEEELRDLIK-EIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc----CC---CCCHHHHHHHHH-HhCCCCCCeEcHHHHHHHHHhh
Confidence 577889999999999999999999999999999995 66 489998888887 8888899999999999999887
Q ss_pred Hhc
Q psy13314 117 NLS 119 (161)
Q Consensus 117 ~~~ 119 (161)
...
T Consensus 74 ~~~ 76 (151)
T KOG0027|consen 74 GEE 76 (151)
T ss_pred hcc
Confidence 655
No 4
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.70 E-value=7.6e-08 Score=65.86 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhhccCC--CCCcceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 39 AHHLDEFVRIWAEYDP--NATGKIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 39 ~e~l~~F~~~W~~fDp--~~tG~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+++++.++++|..||+ +++|+|+.++|..+++. ++.+++. .++..+++.|+. .++.+.+|+|.|.+++..+.+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~---~~~~~ei~~i~~-~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKN---QKDPEAVDKIMK-DLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccC---CCCHHHHHHHHH-HhccCCCCcCcHHHHHHHHHH
Confidence 4679999999999999 89999999999999986 6665554 356677777776 677778999999999988876
Q ss_pred HHh
Q psy13314 116 ENL 118 (161)
Q Consensus 116 ~~~ 118 (161)
.+.
T Consensus 80 ~~~ 82 (88)
T cd00213 80 LAV 82 (88)
T ss_pred HHH
Confidence 643
No 5
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.69 E-value=7.2e-08 Score=66.78 Aligned_cols=75 Identities=13% Similarity=0.247 Sum_probs=63.4
Q ss_pred HHHHHHHHhhccC-CCCCcc-eeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 41 HLDEFVRIWAEYD-PNATGK-IHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 41 ~l~~F~~~W~~fD-p~~tG~-I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
-++..+++|..|| .+++|+ |+.++|..+|+. ++.++|. .|+..+++.|++ .++.+.+|.|+|.+|+..+.+..
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~---~~s~~~v~~i~~-~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDA---QKDADAVDKIMK-ELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccC---CCCHHHHHHHHH-HHCCCCCCcCcHHHHHHHHHHHH
Confidence 4688999999997 999995 999999999985 8776776 477777888887 67888899999999999888765
Q ss_pred hc
Q psy13314 118 LS 119 (161)
Q Consensus 118 ~~ 119 (161)
..
T Consensus 83 ~~ 84 (92)
T cd05025 83 VA 84 (92)
T ss_pred HH
Confidence 44
No 6
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.69 E-value=1.3e-07 Score=65.44 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhccC-CCCCc-ceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYD-PNATG-KIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 40 e~l~~F~~~W~~fD-p~~tG-~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
.-+..++++|..|| ++++| +|+..+|..+|++ ++.-+|. .+++.++..+++ +++.+.+|+|+|.+++..++..
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~---~~~~~~v~~~i~-~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE---IKEQEVVDKVME-TLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC---CCCHHHHHHHHH-HhCCCCCCcCcHHHHHHHHHHH
Confidence 44889999999998 89999 5999999999998 2222343 367777888887 7888899999999999888765
Q ss_pred Hhc
Q psy13314 117 NLS 119 (161)
Q Consensus 117 ~~~ 119 (161)
...
T Consensus 81 ~~~ 83 (88)
T cd05027 81 TTA 83 (88)
T ss_pred HHH
Confidence 543
No 7
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.69 E-value=8.5e-08 Score=66.71 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhccCC-CCCcceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYDP-NATGKIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 40 e~l~~F~~~W~~fDp-~~tG~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
..+...+++|..||+ +++|+|+..+|..+|.+ |+..+ ....++..|++ .++.+.+|+|+|.||+..+.+-+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l------s~~~~v~~mi~-~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL------KDVEGLEEKMK-NLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc------cCHHHHHHHHH-HhCCCCCCCCcHHHHHHHHHHHH
Confidence 458899999999999 99999999999999999 75442 11155677876 78889999999999999888766
Q ss_pred hc
Q psy13314 118 LS 119 (161)
Q Consensus 118 ~~ 119 (161)
..
T Consensus 78 ~~ 79 (89)
T cd05022 78 KA 79 (89)
T ss_pred HH
Confidence 54
No 8
>PF14658 EF-hand_9: EF-hand domain
Probab=98.67 E-value=9.6e-08 Score=62.83 Aligned_cols=62 Identities=19% Similarity=0.361 Sum_probs=53.6
Q ss_pred HhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCC-CceehHHHHHHHHHH
Q psy13314 48 IWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDED-QSVQFTTTMFALIRE 116 (161)
Q Consensus 48 ~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~-g~V~F~dvL~al~~~ 116 (161)
+|..||++.||.|++++|..+|+++..+ .|++.++..|.+ .++-++. |.|+|.+|+..|.++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~------~p~e~~Lq~l~~-elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGR------SPEESELQDLIN-ELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCC------CCcHHHHHHHHH-HhCCCCCCceEeHHHHHHHHHHh
Confidence 6889999999999999999999998554 688888888887 6665655 899999999999765
No 9
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.62 E-value=3.2e-07 Score=63.96 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.+|+++++.++++|..||++++|.|+.+++..+|+.+ |+ +..++++|+. .++.+.+|+|+|.+|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~----~~-----~~~ev~~i~~-~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS----GL-----PQTLLAKIWN-LADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc----CC-----CHHHHHHHHH-HhcCCCCCCcCHHHHHHHHHH
Confidence 3788999999999999999999999999999999984 44 2345566765 566778899999999966544
No 10
>KOG0027|consensus
Probab=98.57 E-value=2.2e-07 Score=69.83 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=57.1
Q ss_pred HHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 41 HLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 41 ~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
..++++++|+.||++++|+|++.+|..+|..++.+ .+..+.+.+++ .++.+.+|+|.|.+++..++.
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~-------~~~~e~~~mi~-~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK-------LTDEECKEMIR-EVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc-------CCHHHHHHHHH-hcCCCCCCeEeHHHHHHHHhc
Confidence 46799999999999999999999999999997555 33566667776 788889999999999988754
No 11
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.56 E-value=3e-07 Score=64.15 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhccC-CCCCc-ceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYD-PNATG-KIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 40 e~l~~F~~~W~~fD-p~~tG-~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
.-+..++++|.+|| .+++| +|+..+|..+|.. ++..++- .++..++..|++ +++.+++|+|+|.||+..+.+-
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~---~~~~~~v~~i~~-elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSS---QKDPMLVDKIMN-DLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccc---ccCHHHHHHHHH-HhCCCCCCCCCHHHHHHHHHHH
Confidence 44889999999999 88999 5999999999977 4444443 245667778886 8888899999999999988765
Q ss_pred Hhc
Q psy13314 117 NLS 119 (161)
Q Consensus 117 ~~~ 119 (161)
+..
T Consensus 83 ~~~ 85 (93)
T cd05026 83 TVA 85 (93)
T ss_pred HHH
Confidence 543
No 12
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.53 E-value=1.1e-07 Score=61.40 Aligned_cols=65 Identities=14% Similarity=0.257 Sum_probs=50.1
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
.+++|..||.+++|+|+.++|..++..+..+.+- ...+..+..+.+ .++.+.+|+|.|.|++.++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~---~~~~~~~~~~~~-~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSD---EESDEMIDQIFR-EFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTH---HHHHHHHHHHHH-HHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccH---HHHHHHHHHHHH-HhCCCCcCCCcHHHHhccC
Confidence 6789999999999999999999999998655331 112223344454 6777899999999999765
No 13
>KOG0028|consensus
Probab=98.48 E-value=1.4e-06 Score=66.57 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=68.3
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.+++++-++.+++|+.|||+++|+|.+++|..-|++ ||+ .|.+.++++|++ +++-...|+|.|.++...++.
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmra----lGF---E~~k~ei~kll~-d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRA----LGF---EPKKEEILKLLA-DVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHH----cCC---CcchHHHHHHHH-hhhhccCceechHHHHHHHHH
Confidence 588899999999999999999999999999999999 599 588888888886 888888899999999999887
Q ss_pred HHhc
Q psy13314 116 ENLS 119 (161)
Q Consensus 116 ~~~~ 119 (161)
.+..
T Consensus 98 k~~e 101 (172)
T KOG0028|consen 98 KLGE 101 (172)
T ss_pred HHhc
Confidence 7655
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.45 E-value=7.1e-07 Score=62.05 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=60.5
Q ss_pred HHHHHHHHhhccCC-CC-CcceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 41 HLDEFVRIWAEYDP-NA-TGKIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 41 ~l~~F~~~W~~fDp-~~-tG~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
-+..++++|..||. ++ +|+|+..+|..+|++ ++..+|. .++..++..+++ .++.+.+|+|.|.+|+..+.+..
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~---~~s~~ei~~~~~-~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKN---QKDPMAVDKIMK-DLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhc---cccHHHHHHHHH-HhCCCCCCcCcHHHHHHHHHHHH
Confidence 47789999999997 97 799999999999986 5555676 466677777776 77888899999999998887654
Q ss_pred h
Q psy13314 118 L 118 (161)
Q Consensus 118 ~ 118 (161)
+
T Consensus 82 ~ 82 (94)
T cd05031 82 I 82 (94)
T ss_pred H
Confidence 4
No 15
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.31 E-value=3.5e-06 Score=58.29 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhccCC-CC-CcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYDP-NA-TGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 40 e~l~~F~~~W~~fDp-~~-tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
+.+....+.|.+||. ++ +|+|+..+|..+|... -++|. +++..++.++++ +++.+++|+|+|.||+..+++-.
T Consensus 7 ~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~---k~t~~ev~~m~~-~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 7 QAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGS---KLQDAEIAKLME-DLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCC---CCCHHHHHHHHH-HhcCCCCCCCcHHHHHHHHHHHH
Confidence 558899999999998 77 8999999999999741 11354 367777888876 88889999999999998888766
Q ss_pred hc
Q psy13314 118 LS 119 (161)
Q Consensus 118 ~~ 119 (161)
..
T Consensus 82 ~~ 83 (88)
T cd05029 82 LI 83 (88)
T ss_pred HH
Confidence 54
No 16
>KOG0041|consensus
Probab=98.22 E-value=3.3e-06 Score=66.79 Aligned_cols=71 Identities=18% Similarity=0.402 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.+..+|+.+...|..||.+.+|||+.-+|..+|..|+.| .+...+|.++. .++-+.+|+++|.++|....+
T Consensus 93 FsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-------QTHL~lK~mik-eVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 93 FSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-------QTHLGLKNMIK-EVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCc-------hhhHHHHHHHH-HhhcccccchhHHHHHHHHHH
Confidence 567889999999999999999999999999999998666 55677888887 888899999999999977654
No 17
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.20 E-value=6.7e-06 Score=52.53 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=51.4
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHh
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENL 118 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~ 118 (161)
|+++|..+|++++|.|+.+++..++..+ |+ +....+.++. .++.+.+|+|.|.|++.++....+
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~----g~-----~~~~~~~i~~-~~d~~~~g~i~~~ef~~~~~~~~~ 64 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKS----GL-----PRSVLAQIWD-LADTDKDGKLDKEEFAIAMHLIAL 64 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHc----CC-----CHHHHHHHHH-HhcCCCCCcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999985 44 2344566765 677778999999999988876543
No 18
>PTZ00183 centrin; Provisional
Probab=98.18 E-value=1.3e-05 Score=59.28 Aligned_cols=73 Identities=21% Similarity=0.372 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.++++++..++++|..+|++++|+|+..++..+++.+ |. .++....+.+.. .++.+.+|+|.|.+++.++..
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~----g~---~~~~~~~~~l~~-~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSL----GF---EPKKEEIKQMIA-DVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh----CC---CCCHHHHHHHHH-HhCCCCCCcEeHHHHHHHHHH
Confidence 5889999999999999999999999999999999986 44 244555666665 567788999999999987765
Q ss_pred H
Q psy13314 116 E 116 (161)
Q Consensus 116 ~ 116 (161)
.
T Consensus 82 ~ 82 (158)
T PTZ00183 82 K 82 (158)
T ss_pred H
Confidence 3
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.11 E-value=1.2e-05 Score=61.62 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=56.2
Q ss_pred HHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 41 HLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 41 ~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.-++++++|+.||.++||+|+..+|..++..| |-. -..+++..|+. .++.+.+|+|+|.+|...+.+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l----ge~---~~deev~~ll~-~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL----GER---LSDEEVEKLLK-EYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh----ccc---CCHHHHHHHHH-hcCCCCCceEeHHHHHHHHhc
Confidence 36899999999999999999999999999974 653 44566677776 777789999999999987754
No 20
>PTZ00184 calmodulin; Provisional
Probab=98.11 E-value=2e-05 Score=57.32 Aligned_cols=71 Identities=21% Similarity=0.432 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+++++++.+++.|..+|++++|.|+..++..++..+ |. .+.....+.+.. .++.+.+|.|.|.+++.++..
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~---~~~~~~~~~~~~-~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSL----GQ---NPTEAELQDMIN-EVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh----CC---CCCHHHHHHHHH-hcCcCCCCcCcHHHHHHHHHH
Confidence 788899999999999999999999999999999886 43 245556666765 566678899999999977654
No 21
>KOG0031|consensus
Probab=98.09 E-value=3.7e-05 Score=58.54 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=63.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.++..||.+|++||...|.+.+|+|.-.||.+++.+|+++ ++..++..|+. + .+|-|.|.-||-+..-
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-------~~d~elDaM~~-E----a~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-------ASDEELDAMMK-E----APGPINFTVFLTMFGE 92 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-------CCHHHHHHHHH-h----CCCCeeHHHHHHHHHH
Confidence 4788999999999999999999999999999999998666 66777777776 3 4679999999999988
Q ss_pred HHhcc
Q psy13314 116 ENLSI 120 (161)
Q Consensus 116 ~~~~~ 120 (161)
+..+.
T Consensus 93 kL~gt 97 (171)
T KOG0031|consen 93 KLNGT 97 (171)
T ss_pred HhcCC
Confidence 87764
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.99 E-value=4.6e-05 Score=52.81 Aligned_cols=77 Identities=6% Similarity=0.193 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhc-cCCCCCc-ceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAE-YDPNATG-KIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 40 e~l~~F~~~W~~-fDp~~tG-~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
..+...+.+|.+ +|.+++| +|+.++|..++...-|++.-. ..+..++.++++ +++.+.+|+|.|.|++..+++-+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~--~~~~~~~~~ll~-~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKN--QKDPGVLDRMMK-KLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcC--CCCHHHHHHHHH-HcCCCCCCcCcHHHHHHHHHHHH
Confidence 458889999999 7788876 999999999999864433321 234456677876 78889999999999998887765
Q ss_pred hc
Q psy13314 118 LS 119 (161)
Q Consensus 118 ~~ 119 (161)
..
T Consensus 83 ~~ 84 (89)
T cd05023 83 VA 84 (89)
T ss_pred HH
Confidence 43
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.98 E-value=4.5e-05 Score=46.50 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
++.+|..+|++++|.|+.+++..+++.+..+ ++....+.+.. ..+.+.+|+|.|.+++..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~-------~~~~~~~~~~~-~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEG-------LSEEEIDEMIR-EVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-------CCHHHHHHHHH-HhCCCCCCeEeHHHHHHHh
Confidence 4678999999999999999999999997433 45555556654 4566778999999998654
No 24
>KOG0030|consensus
Probab=97.85 E-value=0.00011 Score=55.20 Aligned_cols=110 Identities=17% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCC---CCceehHHHHHH-
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDE---DQSVQFTTTMFA- 112 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~---~g~V~F~dvL~a- 112 (161)
.+++++++|+++|..||..++|.|.++++.++||+| |. +|+..++.+-.. =|... --+++|.+||=.
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal----G~---nPT~aeV~k~l~--~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL----GQ---NPTNAEVLKVLG--QPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHh----cC---CCcHHHHHHHHc--CcccchhhhhhhhHHHHHHHH
Confidence 467889999999999999999999999999999995 66 599887655432 12221 257899998844
Q ss_pred --HHHHHhcccccCc-c---chh------HHHHHHHHHHHhhCcCcccccccccc
Q psy13314 113 --LIRENLSIKMRCA-D---EMD------QADEELRDTIRSIWPIESKKMLNLLL 155 (161)
Q Consensus 113 --l~~~~~~~~~~~~-~---~~~------~~~~el~~~~~~~~~~~~~~~~~~~~ 155 (161)
+++..-+.-.++. + .+| .+..|+|+-+.+.=..++.--+|.++
T Consensus 76 q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Ll 130 (152)
T KOG0030|consen 76 QQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELL 130 (152)
T ss_pred HHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHH
Confidence 4443211100000 0 000 23467777776665555544444443
No 25
>PLN03223 Polycystin cation channel protein; Provisional
Probab=97.74 E-value=5.9e-05 Score=72.94 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cCC--HHHHHHHHHHhhccC--CCCCcceeHHHHHHHHHhc
Q psy13314 3 GATGEALANIMLMLNLFVAVIMDNFDYLTRDSS-ILG--AHHLDEFVRIWAEYD--PNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 3 ~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~~-~lt--~e~l~~F~~~W~~fD--p~~tG~I~~~~L~~lL~~L 72 (161)
||.+|+++++||+||||||||++.|+...++.+ .++ .|-.+-+++.|+.+= --+..+|+-..+.+.|+.-
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~~~~~~lr~w 1472 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEARVRRQLRIW 1472 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcHHHHHHHHHh
Confidence 699999999999999999999999998876532 222 233444455554433 1234588999999999984
No 26
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.71 E-value=0.00017 Score=44.60 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=44.4
Q ss_pred CcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 57 TGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 57 tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
+|+|+.++|..+|+.+ |++ ..+..++..|.+ .++.+.+|+|+|.||+..+.++
T Consensus 2 ~G~i~~~~~~~~l~~~----g~~--~~s~~e~~~l~~-~~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 2 DGKITREEFRRALSKL----GIK--DLSEEEVDRLFR-EFDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSEEEHHHHHHHHHHT----TSS--SSCHHHHHHHHH-HHTTSSSSSEEHHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh----CCC--CCCHHHHHHHHH-hcccCCCCCCCHHHHHHHHHhC
Confidence 7999999999999774 763 267777888876 7888899999999999998764
No 27
>KOG0031|consensus
Probab=97.71 E-value=0.00017 Score=54.97 Aligned_cols=64 Identities=14% Similarity=0.336 Sum_probs=56.1
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
+....||+.||++++|.|+-+.|..+|...+.+ -+.++++.|.+ ..|.+..|.++|..+...++
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr-------~~~eEV~~m~r-~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTMGDR-------FTDEEVDEMYR-EAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHhccc-------CCHHHHHHHHH-hCCcccCCceeHHHHHHHHH
Confidence 567899999999999999999999999997555 45677778876 88999999999999999886
No 28
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.68 E-value=5.6e-05 Score=41.76 Aligned_cols=29 Identities=31% Similarity=0.680 Sum_probs=26.6
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
+.+++++.||.+++|+|+.+++..+|++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46789999999999999999999999875
No 29
>PTZ00184 calmodulin; Provisional
Probab=97.67 E-value=0.00018 Score=52.22 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=50.7
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+....+|..||++++|+|+..++..++..+ |.+ .....++.++. .++.+.+|+|.|.|+...+..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~---~~~~~~~~~~~-~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEK---LTDEEVDEMIR-EADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCC---CCHHHHHHHHH-hcCCCCCCcCcHHHHHHHHhc
Confidence 356778999999999999999999999886 332 44555666765 677788899999999877753
No 30
>PTZ00183 centrin; Provisional
Probab=97.65 E-value=0.0002 Score=52.78 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=50.2
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+..+.+|..||++++|+|+..++..++..++++ .+..+++.++. .++.+++|.|+|.++..++.+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-------l~~~~~~~~~~-~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGET-------ITDEELQEMID-EADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC-------CCHHHHHHHHH-HhCCCCCCcCcHHHHHHHHhc
Confidence 356788999999999999999999999886332 45566666665 667778899999999887754
No 31
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.64 E-value=7e-05 Score=41.58 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=25.9
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHH-hc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLR-NI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~-~L 72 (161)
+++++|..||.+++|+|+..+|..+|+ +|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478999999999999999999999999 65
No 32
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.60 E-value=0.00029 Score=48.46 Aligned_cols=76 Identities=12% Similarity=0.306 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhccCCC--CCcceeHHHHHHHHH-hcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYDPN--ATGKIHYKEAVEMLR-NIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 40 e~l~~F~~~W~~fDp~--~tG~I~~~~L~~lL~-~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
..+......|.+|+.. .+|+|+..+|..+|. .++.++. . ......+..+++ .++.+.+|+|+|.||+..+.+.
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t--~-~~~~~~v~~i~~-~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLK--K-EKNQKAIDKIFE-DLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhc--c-CCCHHHHHHHHH-HcCCCCCCcCcHHHHHHHHHHH
Confidence 4478888999999966 479999999999997 4444322 0 123566677776 7788899999999999988876
Q ss_pred Hhc
Q psy13314 117 NLS 119 (161)
Q Consensus 117 ~~~ 119 (161)
...
T Consensus 81 ~~~ 83 (88)
T cd05030 81 GVA 83 (88)
T ss_pred HHH
Confidence 554
No 33
>KOG0034|consensus
Probab=97.52 E-value=0.0006 Score=53.54 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCcCCHHH--------------HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcC
Q psy13314 13 MLMLNLFVAVIMDNFDYLTRDSSILGAHH--------------LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGF 78 (161)
Q Consensus 13 ~I~lNLfIavIle~f~~~~~~~~~lt~e~--------------l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~ 78 (161)
-.-.|+|.--|++-|........ ++.++ -++.+=+|+.||.+++|+|+.++|..++..+ +|-
T Consensus 61 ~~~~Np~~~rI~~~f~~~~~~~~-v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~---~~~ 136 (187)
T KOG0034|consen 61 ELALNPLADRIIDRFDTDGNGDP-VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMM---VGE 136 (187)
T ss_pred HHhcCcHHHHHHHHHhccCCCCc-cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH---Hcc
Confidence 34578999999999984322221 33222 1366679999999999999999999999998 665
Q ss_pred CCCCCCHHHHHHHHH---hCCCCCCCCceehHHHHHHHHHH
Q psy13314 79 GSKCPDRLAAKKLIR---MNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 79 ~~~~p~~~~~k~l~~---l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
+... ..+.+..|+. .+.+.+.+|+|.|.|+..++.+.
T Consensus 137 ~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 137 NDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 4322 2333333322 26788899999999999999876
No 34
>PLN02964 phosphatidylserine decarboxylase
Probab=97.51 E-value=0.00066 Score=62.23 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHH---HHHHHHhCCCCCCCCceehHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLA---AKKLIRMNMPLDEDQSVQFTTTMFA 112 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~---~k~l~~l~ip~~~~g~V~F~dvL~a 112 (161)
.++..|+++++++|..||++++|+| |..+++++ |.- .|+..+ .+++++ .++.+++|.|.|.|++.+
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrsl----G~~--~pte~e~~fi~~mf~-~~D~DgdG~IdfdEFl~l 204 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSC----SIE--DPVETERSFARRILA-IVDYDEDGQLSFSEFSDL 204 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHh----CCC--CCCHHHHHHHHHHHH-HhCCCCCCeEcHHHHHHH
Confidence 4677889999999999999999997 88889985 521 477665 466666 477888999999999988
Q ss_pred HHH
Q psy13314 113 LIR 115 (161)
Q Consensus 113 l~~ 115 (161)
|..
T Consensus 205 L~~ 207 (644)
T PLN02964 205 IKA 207 (644)
T ss_pred HHH
Confidence 874
No 35
>KOG0046|consensus
Probab=97.46 E-value=0.00046 Score=61.40 Aligned_cols=72 Identities=21% Similarity=0.344 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
.+|.++++..++.|...| ++.|++...+|.+++....-|+|+ -.+++++.++. +...+.+|+|.|.+|+.++
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~----~~~eei~~~l~-~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGY----FVREEIKEILG-EVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccc----hhHHHHHHHHh-ccCCCcCCccCHHHHHHHH
Confidence 589999999999999999 999999999999999999999877 34677777776 7777889999999998644
No 36
>KOG0037|consensus
Probab=97.25 E-value=0.0014 Score=52.48 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cCCHHH-------HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCC
Q psy13314 3 GATGEALANIMLMLNLFVAVIMDNFDYLTRDSS-ILGAHH-------LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEP 74 (161)
Q Consensus 3 ~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~~-~lt~e~-------l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~ 74 (161)
+-.++++-+.-+|+|||= ++.. .+...+ |...+.+|..||.|++|.|..++|..-|.+
T Consensus 87 ~~~~Fs~~TcrlmI~mfd-----------~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~--- 152 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFD-----------RDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQ--- 152 (221)
T ss_pred CCCCCCHHHHHHHHHHhc-----------CCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHH---
Confidence 345666777777777762 2322 244333 556677778999999999999999999999
Q ss_pred CCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 75 PLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 75 PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
+|+. -+......|++ .-+-..+|++.|++++.+|++-
T Consensus 153 -~Gy~---Lspq~~~~lv~-kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 153 -LGYR---LSPQFYNLLVR-KYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred -cCcC---CCHHHHHHHHH-HhccccCCceeHHHHHHHHHHH
Confidence 4884 33344444554 2222237899999999988763
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.04 E-value=0.0022 Score=46.59 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
+.+.......-+|..+|.+++|+|+.++|..+. +. +.+.....++. .++.+.+|+|++.|+...+
T Consensus 42 ~~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l~---------~~e~~~~~f~~-~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 42 LYPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR--LD---------PNEHCIKPFFE-SCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH--cc---------chHHHHHHHHH-HHCCCCCCCCCHHHHHHHH
Confidence 445667888999999999999999999999876 21 32343445554 5677899999999999888
No 38
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.94 E-value=0.0051 Score=42.95 Aligned_cols=74 Identities=9% Similarity=0.210 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCCCCcceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHhc
Q psy13314 41 HLDEFVRIWAEYDPNATGKIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLS 119 (161)
Q Consensus 41 ~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~~ 119 (161)
.+...+.+|.+|. ...+.++..+|..+|.+ |+.-|+= .-+...+.++++ +++.+.||.|+|.|++..+++-...
T Consensus 6 ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~---~~d~~~vd~im~-~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 6 SMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKN---QNDPMAVDKIMK-DLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcC---CCCHHHHHHHHH-HhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4677888888888 34568999999998876 4332332 124456677876 8888999999999999998876654
No 39
>KOG0030|consensus
Probab=96.90 E-value=0.0039 Score=46.88 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=52.1
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
.++|.+..+-||++|+|+|+..+|.-+|..|+.. -+.+++..+++ . ..+.+|+|.|.++...+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGek-------l~eeEVe~Lla-g-~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEK-------LTEEEVEELLA-G-QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhh-------ccHHHHHHHHc-c-ccccCCcCcHHHHHHHHh
Confidence 5889999999999999999999999999997433 55677777765 2 245689999999987653
No 40
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.84 E-value=0.0048 Score=44.02 Aligned_cols=68 Identities=24% Similarity=0.394 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
.+++++...|...|...|+ .+|+|+-.+...++..- |+ | ...+++|.. =.+.+.+|+.++.||+.||-
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L----~-~~~L~~IW~-LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GL----P-RDVLAQIWN-LADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TS----S-HHHHHHHHH-HH-SSSSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CC----C-HHHHHHHHh-hhcCCCCCcCCHHHHHHHHH
Confidence 3788899999999999997 57999999998888873 44 2 466777765 34567899999999997773
No 41
>KOG0028|consensus
Probab=96.68 E-value=0.0073 Score=46.38 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=54.0
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.++.+.+|..||-+.||.|+...|..++..|++. -+..++..++. +.+.+.+|-|.=.+|+..|.+
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen-------ltD~El~eMIe-EAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN-------LTDEELMEMIE-EADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc-------ccHHHHHHHHH-HhcccccccccHHHHHHHHhc
Confidence 4677889999999999999999999999997555 55677777776 788888899998888877754
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=96.52 E-value=0.013 Score=53.98 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHH
Q psy13314 38 GAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRE 116 (161)
Q Consensus 38 t~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~ 116 (161)
++++.....++++.+|++++|.|+..++..+|..+ |- .+++++++.+.+ ..+.+++|+|.+.|+...|...
T Consensus 174 te~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l----g~---~~seEEL~eaFk-~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 174 VETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF----GN---LVAANKKEELFK-AADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh----cc---CCCHHHHHHHHH-HhCCCCCCcCCHHHHHHHHHhc
Confidence 44444457888999999999999999999999985 32 245566666665 5677889999999999988774
No 43
>KOG0040|consensus
Probab=96.43 E-value=0.02 Score=56.76 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=60.6
Q ss_pred CcCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCc-CCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 35 SILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLG-FGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 35 ~~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG-~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
+++|++++.+|.-+|.-||.+.+|.+.+.++..+|++++.-|- +..-.| ..+++.++. -++...+|.|.-+|.+.-|
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~-~p~fe~~ld-~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEP-EPEFEEILD-LVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCC-ChhHHHHHH-hcCCCCcCcccHHHHHHHH
Confidence 4799999999999999999999999999999999999754441 111012 245667765 3555678999999988555
Q ss_pred HHH
Q psy13314 114 IRE 116 (161)
Q Consensus 114 ~~~ 116 (161)
.++
T Consensus 2323 i~~ 2325 (2399)
T KOG0040|consen 2323 ISK 2325 (2399)
T ss_pred Hhc
Confidence 543
No 44
>KOG0038|consensus
Probab=96.42 E-value=0.015 Score=44.30 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=49.0
Q ss_pred HHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHH--HHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 46 VRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLA--AKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 46 ~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~--~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+-||+.||-+++++|-..+|...+.+|-.- +++ +.+.+ ..+++. +.+++++|++.|.|+=+.+.|
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~-eLs---~eEv~~i~ekvie-EAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRD-ELS---DEEVELICEKVIE-EADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhc-cCC---HHHHHHHHHHHHH-HhcCCCCCcccHHHHHHHHHh
Confidence 457899999999999999999999997444 331 22221 134444 788899999999999887765
No 45
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.35 E-value=0.0043 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=25.1
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
++++++.+|++++|.|+..++..+++++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~~ 29 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKAL 29 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHhC
Confidence 5788999999999999999999988763
No 46
>KOG0036|consensus
Probab=96.09 E-value=0.04 Score=48.11 Aligned_cols=71 Identities=20% Similarity=0.255 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
..++.-.+.+..|+.||-++.|++.+++|...+..|+.| +|+....+.+.+ .++.+.+|+|+|.||-.-+.
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~------~~~~~~~~~l~~-~~d~~~dg~vDy~eF~~Y~~ 78 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHP------KPNYEAAKMLFS-AMDANRDGRVDYSEFKRYLD 78 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCC------CCchHHHHHHHH-hcccCcCCcccHHHHHHHHH
Confidence 445556788999999999999999999999999999888 466665566665 77888899999999975443
No 47
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.01 E-value=0.0091 Score=31.62 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=21.6
Q ss_pred HHHhhccCCCCCcceeHHHHHHHH
Q psy13314 46 VRIWAEYDPNATGKIHYKEAVEML 69 (161)
Q Consensus 46 ~~~W~~fDp~~tG~I~~~~L~~lL 69 (161)
+++++.+|.+++|.|+..++..++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 568899999999999999998875
No 48
>KOG0044|consensus
Probab=95.85 E-value=0.017 Score=45.61 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCC---CCCCHHH-HHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 46 VRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGS---KCPDRLA-AKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 46 ~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~---~~p~~~~-~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.=+|+.||.+++|+|+..++..++.++-.-.|-.. +..+..+ ..++.+ .++.+.+|.+.+.|++.++.+
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~-k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFS-KMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHH-HcCCCCCCcccHHHHHHHhhh
Confidence 34579999999999999999999888655555311 0111122 234544 788889999999999988754
No 49
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.69 E-value=0.046 Score=33.40 Aligned_cols=32 Identities=25% Similarity=0.589 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHh
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRN 71 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~ 71 (161)
+++++ +...++.+|++++|+|++.++..++..
T Consensus 22 ~s~~e---~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEE---VDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHH---HHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CCHHH---HHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 66654 777899999999999999999998875
No 50
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=93.67 E-value=0.095 Score=28.65 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=20.4
Q ss_pred HHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 89 KKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 89 k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+++.+ ..+.+++|+|+|.|++.+|.+
T Consensus 3 ~~~F~-~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 3 KEAFR-EFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHH-HHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHH-HHCCCCCCcCCHHHHHHHHHh
Confidence 44554 567889999999999998864
No 51
>KOG0034|consensus
Probab=93.61 E-value=0.18 Score=39.57 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHhhccCCC-CCcceeHHHHHHHHHhcCCCCcCC-----------C-C---------------CCCHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPN-ATGKIHYKEAVEMLRNIEPPLGFG-----------S-K---------------CPDRLAA 88 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~-~tG~I~~~~L~~lL~~L~~PLG~~-----------~-~---------------~p~~~~~ 88 (161)
++..++...+..|.++|++ +.|+|+.+++..+..--.-|++-. . . .+.+...
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 7888999999999999999 999999999988875544444310 0 0 0111111
Q ss_pred HHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 89 KKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 89 k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
+.+---.+++.+|.|...|+.+++.+.+
T Consensus 107 -~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 107 -RFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred -HHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 1222134666788888888888875444
No 52
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=93.32 E-value=0.26 Score=33.87 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=38.6
Q ss_pred HHHHHhhhhh-hhhccC--cCCHHHHH------------------HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 20 VAVIMDNFDY-LTRDSS--ILGAHHLD------------------EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 20 IavIle~f~~-~~~~~~--~lt~e~l~------------------~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
|+.|+..|.. +..+.. .|+.+++. ...+.|+.+|.+++|.|+++++..++..|
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5566777775 444432 46665543 34566889999999999999999999885
No 53
>KOG0377|consensus
Probab=92.94 E-value=0.29 Score=43.43 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=46.0
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
....|.-.|.|.+|.|+.+++.....-+..-.-. .-+..++.+++. -++...+|+|+++|+|.|.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~---~i~~~~i~~la~-~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNG---AISDDEILELAR-SMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCC---CcCHHHHHHHHH-hhccCCCCcccHHHHHHHH
Confidence 4457888999999999999986655443222222 134455555654 5788899999999999886
No 54
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=92.53 E-value=0.27 Score=42.87 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=41.6
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
....+.+|+.||++++|+|+..++. | ...+.. .++.+++|+|++.|+...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~----------~----------~~~~F~-~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWL----------G----------SDAVFD-ALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHH----------H----------HHHHHH-HhCCCCCCCCcHHHHHHHHHH
Confidence 4567889999999999999999983 1 123444 567789999999999988754
No 55
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=92.10 E-value=0.53 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=24.3
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
...+.|..+|++++|.|++.++..++..+
T Consensus 52 ~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 52 AIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 35567888999999999999998888874
No 56
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=91.91 E-value=0.22 Score=31.37 Aligned_cols=27 Identities=22% Similarity=0.625 Sum_probs=23.0
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHH
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEML 69 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL 69 (161)
+....+|+.+|++++|.|+..++..++
T Consensus 40 ~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 40 EMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 355677999999999999999998764
No 57
>KOG3599|consensus
Probab=91.85 E-value=0.15 Score=48.22 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=27.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy13314 3 GATGEALANIMLMLNLFVAVIMDNFDYLTRD 33 (161)
Q Consensus 3 ~~~~~~~~~~~I~lNLfIavIle~f~~~~~~ 33 (161)
+|+.+-+.+++|++|||.|+|++.|+...++
T Consensus 655 ~~~~~v~~v~~illnmF~aiI~~~~~evk~~ 685 (798)
T KOG3599|consen 655 LFLTYVFVVSFILLNLFVAIINDTYGEVKAD 685 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 6889999999999999999999999976654
No 58
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=91.69 E-value=0.18 Score=46.79 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=27.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy13314 3 GATGEALANIMLMLNLFVAVIMDNFDYLTRDS 34 (161)
Q Consensus 3 ~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~ 34 (161)
.|..|.++++.|+|||+||++-+.|+.+.++.
T Consensus 591 l~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~ 622 (743)
T TIGR00870 591 LFGAYNVIMYILLLNMLIAMMGNTYQLIADDA 622 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Confidence 36789999999999999999999999776543
No 59
>KOG2302|consensus
Probab=91.42 E-value=0.17 Score=48.89 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=26.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13314 2 SGATGEALANIMLMLNLFVAVIMDNFDYL 30 (161)
Q Consensus 2 ~~~~~~~~~~~~I~lNLfIavIle~f~~~ 30 (161)
-||+++-+|++|.+||||+.|++|||-..
T Consensus 1363 lYfIsfllIvsffVlnmfVgvvvenfhKc 1391 (1956)
T KOG2302|consen 1363 LYFISFLLIVSFFVLNMFVGVVVENFHKC 1391 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999999999843
No 60
>KOG2301|consensus
Probab=91.41 E-value=0.25 Score=49.85 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy13314 2 SGATGEALANIMLMLNLFVAVIMDNFDYLT 31 (161)
Q Consensus 2 ~~~~~~~~~~~~I~lNLfIavIle~f~~~~ 31 (161)
-||+-|-++..+|+||+|+|++++||+...
T Consensus 637 i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 637 IYFIAYFLFGNLVVLNLFLALILDNFESDE 666 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 379999999999999999999999999543
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=91.11 E-value=0.69 Score=31.45 Aligned_cols=53 Identities=19% Similarity=0.441 Sum_probs=36.9
Q ss_pred HHHHHhhhhhhh-hccC--cCCHHHHHH------------------HHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 20 VAVIMDNFDYLT-RDSS--ILGAHHLDE------------------FVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 20 IavIle~f~~~~-~~~~--~lt~e~l~~------------------F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
+..+.+.|.... ++.. .|+.+++.. ..+.++.+|++++|.|++.++..++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 456677777654 5443 266554332 3456778899999999999999888875
No 62
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=90.78 E-value=0.72 Score=31.58 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=23.4
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
..+.++..|++++|.|+++++..++..|
T Consensus 53 v~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 53 IAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3345778899999999999999988875
No 63
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=90.55 E-value=0.85 Score=31.35 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=37.7
Q ss_pred HHHHHhhhhhhh-hccC--cCCHHHHHHHH------------------HHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 20 VAVIMDNFDYLT-RDSS--ILGAHHLDEFV------------------RIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 20 IavIle~f~~~~-~~~~--~lt~e~l~~F~------------------~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
|.-+.+.|.... .+.. .|+.+++.... +..+.+|.+++|.|+++++..++..|
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 456678888544 4443 37776654443 34578899999999999999998875
No 64
>KOG3733|consensus
Probab=89.38 E-value=0.66 Score=41.00 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCcCCHHHHHHHHHH
Q psy13314 6 GEALANIMLMLNLFVAVIMDNFDYLTRD-SSILGAHHLDEFVRI 48 (161)
Q Consensus 6 ~~~~~~~~I~lNLfIavIle~f~~~~~~-~~~lt~e~l~~F~~~ 48 (161)
|+.=+-.|++|.||||+|-|.|+....- .....+.|+++|..-
T Consensus 486 SFISLfIYmvLSLFIAlItdaYDTIK~~qq~GfpeTdLqafi~e 529 (566)
T KOG3733|consen 486 SFISLFIYMVLSLFIALITDAYDTIKAYQQDGFPETDLQAFITE 529 (566)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHhhhCCCChhHHHHHHHH
Confidence 4444556779999999999999976652 334667788888843
No 65
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=88.75 E-value=0.54 Score=27.76 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=22.5
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHH
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEML 69 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL 69 (161)
....+|..+|++++|.|+++++..++
T Consensus 37 ~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 37 EIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45678999999999999999998765
No 66
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=88.65 E-value=1.8 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhhhhhccC-cCCHHHHHHH---------HHHhhccCCCCCcceeHHHHHHHH
Q psy13314 16 LNLFVAVIMDNFDYLTRDSS-ILGAHHLDEF---------VRIWAEYDPNATGKIHYKEAVEML 69 (161)
Q Consensus 16 lNLfIavIle~f~~~~~~~~-~lt~e~l~~F---------~~~W~~fDp~~tG~I~~~~L~~lL 69 (161)
.....+-|--.|.....+.. .|+.+++..+ ...+..+|.+++|.|+..++..++
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 46677788888887766654 5898888765 346799999999999999998888
No 67
>KOG0044|consensus
Probab=87.61 E-value=4.2 Score=32.12 Aligned_cols=17 Identities=29% Similarity=0.606 Sum_probs=8.3
Q ss_pred hhccCCCCCcceeHHHH
Q psy13314 49 WAEYDPNATGKIHYKEA 65 (161)
Q Consensus 49 W~~fDp~~tG~I~~~~L 65 (161)
++-||.+++|+|+.+++
T Consensus 70 F~~fD~~~dg~i~F~Ef 86 (193)
T KOG0044|consen 70 FRTFDKNKDGTIDFLEF 86 (193)
T ss_pred HHHhcccCCCCcCHHHH
Confidence 34444455555555553
No 68
>KOG0377|consensus
Probab=86.56 E-value=2.3 Score=38.01 Aligned_cols=67 Identities=27% Similarity=0.405 Sum_probs=50.7
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
-.+..+.|.++|++.+|+|+.++-...|..+ +|++ -|=+.-.-++ ++..++|+|.|...+..+....
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i---~~L~--LPWr~L~~kl----a~~s~d~~v~Y~~~~~~l~~e~ 529 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENI---TGLN--LPWRLLRPKL----ANGSDDGKVEYKSTLDNLDTEV 529 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHH---hcCC--CcHHHhhhhc----cCCCcCcceehHhHHHHhhhhh
Confidence 3567788999999999999999999999997 5665 2544322222 4677889999999998776544
No 69
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=86.05 E-value=2.5 Score=28.85 Aligned_cols=28 Identities=11% Similarity=0.359 Sum_probs=22.4
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
..+.++..|++++|.|++.++..++..+
T Consensus 53 v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 53 VDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4455667899999999999998888764
No 70
>KOG4065|consensus
Probab=86.03 E-value=6 Score=29.12 Aligned_cols=74 Identities=9% Similarity=0.135 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCC--CCcC-CCCCCCHHHHHHHHHh---CCCCCCCCceehHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEP--PLGF-GSKCPDRLAAKKLIRM---NMPLDEDQSVQFTTTM 110 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~--PLG~-~~~~p~~~~~k~l~~l---~ip~~~~g~V~F~dvL 110 (161)
+|+++++- --|++.|-++.|++.--+|...+..... --|- +..-|.+.++.+|+.- +-+.+.+|.|.|-++|
T Consensus 63 mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 63 MTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred CCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 55655442 3588999999999999888776655432 1111 0002556666665431 5667778999999998
Q ss_pred HH
Q psy13314 111 FA 112 (161)
Q Consensus 111 ~a 112 (161)
.+
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 65
No 71
>KOG4223|consensus
Probab=85.73 E-value=1.3 Score=37.64 Aligned_cols=69 Identities=12% Similarity=0.194 Sum_probs=52.5
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
+-.=.+.|+.-|.++.|.++.+++..||+--+-| +-....++.-+. +++.+++|+|.+.|++--|....
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p------~M~~iVi~Etl~-d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHP------HMKDIVIAETLE-DIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcc------hHHHHHHHHHHh-hcccCCCCceeHHHHHhHHhhcc
Confidence 4445678999999999999999999999875433 233444444443 89999999999999998775543
No 72
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=83.44 E-value=4.5 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=23.9
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
...+.|..+|.+++|.|++.++..++..+
T Consensus 52 ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 52 AVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34557888999999999999998888774
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=82.99 E-value=4.9 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.340 Sum_probs=37.4
Q ss_pred HHHHHhhhhhhhhccCcCCHHHHH------------------HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 20 VAVIMDNFDYLTRDSSILGAHHLD------------------EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 20 IavIle~f~~~~~~~~~lt~e~l~------------------~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
|..|+..|-....+...|++.++. ...++.+..|.+++|.|+.+++..++..|
T Consensus 7 i~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 556777777333333346655543 23457788999999999999999999885
No 74
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=81.11 E-value=1.9 Score=29.36 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=24.5
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
..+.++.+|++++|.|++.++..++..+
T Consensus 53 i~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 53 VDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999999999998874
No 75
>KOG0042|consensus
Probab=80.79 E-value=4.7 Score=37.00 Aligned_cols=76 Identities=8% Similarity=0.062 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.++++++..++..+..+|.+.+|++.+.++...|.+.. -||+ ....+.+.+ +++.+-+|.+.-.|+++.+..
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~--~~~d-----~~~~~~~l~-ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSEN--VGWD-----EDRLHEELQ-EADENLNGFVELREFLQLMSA 657 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc--CCCC-----HHHHHHHHH-HHHHhhcceeeHHHHHHHHHH
Confidence 48999999999999999999999999999999999974 2443 233444443 556666899999999988877
Q ss_pred HHhc
Q psy13314 116 ENLS 119 (161)
Q Consensus 116 ~~~~ 119 (161)
..-+
T Consensus 658 ~~~g 661 (680)
T KOG0042|consen 658 IKNG 661 (680)
T ss_pred HhcC
Confidence 6655
No 76
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=80.75 E-value=4.9 Score=27.37 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=24.7
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
...+.|+.+|++++|+|+.+++..++..+
T Consensus 45 ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 45 LLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 44577889999999999999998888775
No 77
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=79.79 E-value=2.4 Score=29.17 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.7
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
++..+..+..|.+++|.|++.++..+|..|
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 346666778999999999999999999886
No 78
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=79.73 E-value=2.5 Score=26.10 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.0
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
...+.|..+|++++|.|+..++..++..+
T Consensus 34 ~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 34 VLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 34667889999999999999998887664
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=79.09 E-value=5.2 Score=34.90 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=32.5
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
.++.+++......|..+|.+++|.|+..++..++...
T Consensus 350 ~Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 350 FITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred cCcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 5898887667889999999999999999999988763
No 80
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=76.71 E-value=0.78 Score=32.97 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHH
Q psy13314 40 HHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMF 111 (161)
Q Consensus 40 e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~ 111 (161)
.......=.|...|.+++|+++.++|..+.+.|.+| +.-.+.... ..+++.+|+|+..|...
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~---------e~C~~~F~~-~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPP---------EHCARPFFR-SCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTT---------GGGHHHHHH-HH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhh---------HHHHHHHHH-HcCCCCCCCCCHHHHcc
Confidence 345556666799999999999999999887766333 222223333 34567899999998764
No 81
>KOG0036|consensus
Probab=74.98 E-value=10 Score=33.58 Aligned_cols=61 Identities=23% Similarity=0.309 Sum_probs=46.2
Q ss_pred HHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHH
Q psy13314 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFA 112 (161)
Q Consensus 44 ~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~a 112 (161)
...+.|...|.+.+|.|...++..-++.+ |+. -+.++..++.. .++.++.+.|++++.=.-
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~---l~de~~~k~~e-~~d~~g~~~I~~~e~rd~ 143 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQ---LSDEKAAKFFE-HMDKDGKATIDLEEWRDH 143 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHh----CCc---cCHHHHHHHHH-HhccCCCeeeccHHHHhh
Confidence 45678889999999999999999999996 663 34455555554 566677788998887643
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=70.78 E-value=5 Score=24.99 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.0
Q ss_pred HHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 46 VRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 46 ~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
...|.++|..++|.+.-+++..|.+.|
T Consensus 24 ~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 24 RQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 348899999999999999999998875
No 83
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=70.74 E-value=22 Score=23.86 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHH--HhhhhhhhhccCcCCHHHHHHHHHHhhc
Q psy13314 7 EALANIMLMLNLFVAVI--MDNFDYLTRDSSILGAHHLDEFVRIWAE 51 (161)
Q Consensus 7 ~~~~~~~I~lNLfIavI--le~f~~~~~~~~~lt~e~l~~F~~~W~~ 51 (161)
+-+++-+|+.=+|||.+ .=+|..-.+....+|.+|.+...+.+..
T Consensus 4 ~fl~~plivf~ifVap~WL~lHY~sk~~~~~gLs~~d~~~L~~L~~~ 50 (75)
T PF06667_consen 4 EFLFVPLIVFMIFVAPIWLILHYRSKWKSSQGLSEEDEQRLQELYEQ 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHH
Confidence 34555566666788887 5555543344457999998888777743
No 84
>KOG0035|consensus
Probab=70.16 E-value=10 Score=36.42 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCC-CC-HHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKC-PD-RLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~-p~-~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
..+.+.+++|+..+..+|...+|-+.+.++...|.++ |+.... .+ ..+..+|+.. ++....|.++|.++..-|
T Consensus 740 ~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~-~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 740 GTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNK-KNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred chhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhc-cCcccccceeHHHHHhHh
Confidence 4677889999999999999999999999999999996 553211 11 1233456552 222236999999999999
Q ss_pred HHHHhc
Q psy13314 114 IRENLS 119 (161)
Q Consensus 114 ~~~~~~ 119 (161)
.|+.-.
T Consensus 815 ~R~~e~ 820 (890)
T KOG0035|consen 815 EREYED 820 (890)
T ss_pred hhhhhh
Confidence 987543
No 85
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=69.00 E-value=4.2 Score=29.88 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 47 RIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 47 ~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
=.|.-||+++||.|++-.+.-.+..|
T Consensus 101 ~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 101 WLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 36799999999999999997776654
No 86
>KOG0037|consensus
Probab=67.38 E-value=17 Score=29.41 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=42.5
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHH
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTM 110 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL 110 (161)
......+...|.+..|+|..++|...|... ++.+ -+-+..+-|+. -.+.+..|+|.|.||-
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~----~~~~--Fs~~TcrlmI~-mfd~~~~G~i~f~EF~ 117 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNG----TWSP--FSIETCRLMIS-MFDRDNSGTIGFKEFK 117 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcC----CCCC--CCHHHHHHHHH-HhcCCCCCccCHHHHH
Confidence 345556688899999999999999988862 4432 23344445555 3455678899988885
No 87
>KOG2871|consensus
Probab=67.38 E-value=11 Score=32.98 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCC
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPP 75 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~P 75 (161)
+..+++|.-|||.+.|||+++-+..+|..++.|
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~ 341 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRL 341 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhccc
Confidence 567889999999999999999999999998744
No 88
>KOG3609|consensus
Probab=65.23 E-value=4.6 Score=38.34 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy13314 4 ATGEALANIMLMLNLFVAVIMDNFDYLTRDS 34 (161)
Q Consensus 4 ~~~~~~~~~~I~lNLfIavIle~f~~~~~~~ 34 (161)
|..||.++.-|+|||.||+|...|+....++
T Consensus 588 fG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~A 618 (822)
T KOG3609|consen 588 FGVYNVILIIVLLNLLIAMMSNSYQEIEDDA 618 (822)
T ss_pred HHhhheeeHHHHHHHHHHHHHhHHHHHhhcc
Confidence 5678888888999999999999999766443
No 89
>KOG2243|consensus
Probab=64.69 E-value=9.2 Score=39.09 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=37.2
Q ss_pred HhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHH
Q psy13314 48 IWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMF 111 (161)
Q Consensus 48 ~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~ 111 (161)
.|+.|||+|.|-|+-+++...|..- + .-+..+...+.+ ..-.++++..+|.||..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~------k--~ytqse~dflls-cae~dend~~~y~dfv~ 4116 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH------K--HYTQSEIDFLLS-CAEADENDMFDYEDFVD 4116 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc------c--cchhHHHHHHHH-hhccCccccccHHHHHH
Confidence 5788999999999999999888752 2 233444455554 44455666666666553
No 90
>COG5607 Uncharacterized conserved protein [Function unknown]
Probab=64.36 E-value=70 Score=26.81 Aligned_cols=99 Identities=11% Similarity=0.011 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhcc----CcCCHHHH-------HHHHHHhhccCCCCCc--ceeHHHHHHHHHhcCCCCcCC
Q psy13314 13 MLMLNLFVAVIMDNFDYLTRDS----SILGAHHL-------DEFVRIWAEYDPNATG--KIHYKEAVEMLRNIEPPLGFG 79 (161)
Q Consensus 13 ~I~lNLfIavIle~f~~~~~~~----~~lt~e~l-------~~F~~~W~~fDp~~tG--~I~~~~L~~lL~~L~~PLG~~ 79 (161)
.=++|++|..+.++|....+-+ ..-++|++ +..+.+|..|+|--.- ..+...|.++.+++++-
T Consensus 4 ~~~~~~~~~~v~~~~~~~lk~~~~~~k~~d~E~LHdmRVavRRlRsa~~~f~~vl~~~~~~~~~kl~~~~~~lG~v---- 79 (283)
T COG5607 4 MAFGDMAIFAVKKHFNKLLKHEKRLRKDEDPEELHDMRVAVRRLRSALYVFHPVLELVELEPHAKLGEIGRALGPV---- 79 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHhhHHHHHHhcCCc----
Confidence 4578999999999999543322 12445554 5678899999986433 34444466666665322
Q ss_pred CCCCCHHHHH-HHHHhCCCCCCCCceehHHHHHHHHHHHhc
Q psy13314 80 SKCPDRLAAK-KLIRMNMPLDEDQSVQFTTTMFALIRENLS 119 (161)
Q Consensus 80 ~~~p~~~~~k-~l~~l~ip~~~~g~V~F~dvL~al~~~~~~ 119 (161)
.-. ..++ .+.. ..|--+.+.-|+.|++-.++++...
T Consensus 80 --RDl-DVl~~~~~~-y~~~lp~~~~~~l~~~~~La~rr~~ 116 (283)
T COG5607 80 --RDL-DVLLEALET-YLPHLPPAEQHDLDLFDKLAKRREK 116 (283)
T ss_pred --chH-HHHHHHHHH-hcccCChhhhhHHHHHHHHHHHhhH
Confidence 111 2222 2222 3444455666777777777776533
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=63.93 E-value=9.2 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.1
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
+....+|..-|.+.+|+++..++.-.|+-+
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 567889999999999999999998777654
No 92
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=63.01 E-value=9.3 Score=28.63 Aligned_cols=86 Identities=14% Similarity=0.231 Sum_probs=55.6
Q ss_pred HHHhhccCCCCCc--ceeHHHHHHHHHhcCCCCcCCCCCCCHHHH-----HHHHHhCCCCCCCCceehHHHHHHHHHHHh
Q psy13314 46 VRIWAEYDPNATG--KIHYKEAVEMLRNIEPPLGFGSKCPDRLAA-----KKLIRMNMPLDEDQSVQFTTTMFALIRENL 118 (161)
Q Consensus 46 ~~~W~~fDp~~tG--~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~-----k~l~~l~ip~~~~g~V~F~dvL~al~~~~~ 118 (161)
.++|-..|.++.- -++.+-|..++..+.. ..++.+ +.|.+ ++| |+|.||..-++..+-
T Consensus 40 ~EpWf~~De~~~~~~l~p~~~l~~Li~~~k~--------~~~E~f~lkLEk~I~q-~~P------IDF~Dvw~VAm~ei~ 104 (137)
T PF10788_consen 40 NEPWFIIDENNEEYVLLPQKSLQNLIESLKN--------AQKENFELKLEKDILQ-QMP------IDFEDVWAVAMDEIK 104 (137)
T ss_pred CCCeEEEcCCCCEEEEECHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH-hCC------CcHHHHHHHHHHHHH
Confidence 5689999999877 5677888888888621 111211 23444 666 569999876666665
Q ss_pred cccccCccchhHHHHHHHHHHHhhCcCc
Q psy13314 119 SIKMRCADEMDQADEELRDTIRSIWPIE 146 (161)
Q Consensus 119 ~~~~~~~~~~~~~~~el~~~~~~~~~~~ 146 (161)
..+.+.+...+.=-..+-+.+++..||+
T Consensus 105 ~~~~~~~~~~~id~~~lvk~IKk~HPNL 132 (137)
T PF10788_consen 105 KMRQKDGNLPNIDLDKLVKNIKKEHPNL 132 (137)
T ss_pred HHHhcCCCcCCCCHHHHHHHHHHhCCCe
Confidence 5443333222211368899999999986
No 93
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=61.45 E-value=34 Score=26.65 Aligned_cols=38 Identities=21% Similarity=0.472 Sum_probs=33.9
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHh---cCCCCcCC
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRN---IEPPLGFG 79 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~---L~~PLG~~ 79 (161)
-+.|-++|++|+..+.+.++..++..+++. ...|+||.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~ 135 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWF 135 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhh
Confidence 468999999999999999999999999987 67788885
No 94
>PF14658 EF-hand_9: EF-hand domain
Probab=58.36 E-value=17 Score=23.75 Aligned_cols=28 Identities=21% Similarity=0.593 Sum_probs=24.0
Q ss_pred HHHHHhhccCCCCC-cceeHHHHHHHHHh
Q psy13314 44 EFVRIWAEYDPNAT-GKIHYKEAVEMLRN 71 (161)
Q Consensus 44 ~F~~~W~~fDp~~t-G~I~~~~L~~lL~~ 71 (161)
++++.=+.+||++. |.|..+.+..+|+.
T Consensus 36 ~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 36 ELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 56667788999999 99999999988875
No 95
>KOG3676|consensus
Probab=57.96 E-value=14 Score=35.11 Aligned_cols=29 Identities=14% Similarity=0.393 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy13314 4 ATGEALANIMLMLNLFVAVIMDNFDYLTR 32 (161)
Q Consensus 4 ~~~~~~~~~~I~lNLfIavIle~f~~~~~ 32 (161)
|..|-|+++.+++||.||..=+.|..+.+
T Consensus 624 fv~y~ilv~ILllNMLIAMMg~Ty~~Va~ 652 (782)
T KOG3676|consen 624 FVAYMILVTILLLNMLIAMMGNTYETVAQ 652 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 67889999999999999999999986554
No 96
>PHA02053 hypothetical protein
Probab=57.82 E-value=19 Score=25.54 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcCCHHHHHHHHHHhhccCCCCCc
Q psy13314 5 TGEALANIMLMLNLFVAVIMDNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATG 58 (161)
Q Consensus 5 ~~~~~~~~~I~lNLfIavIle~f~~~~~~~~~lt~e~l~~F~~~W~~fDp~~tG 58 (161)
|+..++.+..+|-+|||. -|+-++..+--..|.++|+.+|.=-|.
T Consensus 42 ts~kllns~MilK~li~s---------GddmP~D~~ta~~F~kayR~~~VIysr 86 (115)
T PHA02053 42 TSNKLLNSLMILKLLIAS---------GDDMPIDANTATEFQKAYRSWGVIYSR 86 (115)
T ss_pred hHHHHHHHHHHHHHHHHc---------CCCCCCCCCCHHHHHHHHHhcCeeeec
Confidence 566677777777777752 333344444457899999999865544
No 97
>KOG4251|consensus
Probab=56.76 E-value=69 Score=26.75 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=40.6
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHh-cCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHH
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRN-IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMF 111 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~-L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~ 111 (161)
-+.....|++.|.+.+|+|+..++..-+.. ...-+.-. ..+. ++----++.+++|.|.+.++=.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqea-----meeS-kthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEA-----MEES-KTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHH-----Hhhh-hhheeeeCCCCCCceehhhhhh
Confidence 457888999999999999999999766554 11000000 0000 1111136778889999888763
No 98
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=56.33 E-value=14 Score=26.99 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHhCCCCCCCCceehHHHHHHHH
Q psy13314 83 PDRLAAKKLIRMNMPLDEDQSVQFTTTMFALI 114 (161)
Q Consensus 83 p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~ 114 (161)
-+.+++.+|.. ++|++..|++.|.|||....
T Consensus 4 LtDeQFdrLW~-e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWN-EMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHT-TS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhh-hCcCCccCCEeHHHHHHHcc
Confidence 45677888886 99999999999999996554
No 99
>COG4853 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.99 E-value=11 Score=30.93 Aligned_cols=74 Identities=16% Similarity=0.302 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh------cc-------CcCC-H----------HHHHHHHHHhhccCCCCCc--cee
Q psy13314 8 ALANIMLMLNLFVAVIMDNFDYLTR------DS-------SILG-A----------HHLDEFVRIWAEYDPNATG--KIH 61 (161)
Q Consensus 8 ~~~~~~I~lNLfIavIle~f~~~~~------~~-------~~lt-~----------e~l~~F~~~W~~fDp~~tG--~I~ 61 (161)
..|+.|++||+|.++|.=|-..+.. ++ ..++ . ..+..-+..|..++-++-| .+.
T Consensus 9 IFIv~fLllnifL~~iffnkk~~~~~~~l~es~~Ee~lkadnIsvh~~L~~k~tsG~~lt~~q~~ft~~~v~al~~qa~t 88 (264)
T COG4853 9 IFIVVFLLLNIFLVSIFFNKKVNRSHINLVESNNEENLKADNISVHASLLNKSTSGIKLTQIQGRFTDFSVKALGDQALT 88 (264)
T ss_pred eehhHHHHHHHHHHHHHhhhhhcCCchhhhcccHHhhhccccccccccccccCCcceEEEeeecccchhhhhhcCCcccc
Confidence 3589999999999999877331111 00 0122 1 1123456788888777554 333
Q ss_pred HHHH-HHHHHhcCCCCcCCCC
Q psy13314 62 YKEA-VEMLRNIEPPLGFGSK 81 (161)
Q Consensus 62 ~~~L-~~lL~~L~~PLG~~~~ 81 (161)
.++= ..+-..|..|.-++++
T Consensus 89 ls~p~k~L~a~l~~pik~sdk 109 (264)
T COG4853 89 LSDPGKLLNANLSQPIKVSDK 109 (264)
T ss_pred ccCcchhhhhhccCceecccc
Confidence 3333 2555667888777653
No 100
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=50.33 E-value=65 Score=20.96 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCC---CCCCCceehHHHHHHH
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMP---LDEDQSVQFTTTMFAL 113 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip---~~~~g~V~F~dvL~al 113 (161)
...+|..|.. +.+.|+..+|..||+.-..--. .+....+.|+.---| ....+.+.+.+|..-|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~-----~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPR-----LTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TT-----SSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhcccc-----CcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 4678899966 7889999999999988533211 244555555432111 1245778888877544
No 101
>KOG4223|consensus
Probab=47.51 E-value=52 Score=28.10 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=49.3
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHh
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENL 118 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~ 118 (161)
-+.......+.|-+++|||..++|..-+..--+- +..+.+.+++.. .+.+.+|.|.|.+.+.+...+..
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~------~v~~~~~~~~~~--~d~~~Dg~i~~eey~~~~~~~~~ 144 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKK------YVVEEAARRWDE--YDKNKDGFITWEEYLPQTYGRVD 144 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHH------HHHHHHHHHHHH--hccCccceeeHHHhhhhhhhccc
Confidence 5677888899999999999999998777662111 122233344543 34458999999999999987654
No 102
>KOG0747|consensus
Probab=39.49 E-value=2e+02 Score=24.60 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=41.1
Q ss_pred CCCCCCCCc-----eehHHHHHHHHHHHhccc------ccCccchh--HHHHHHHHHHHhhCcCccccccccccCCC
Q psy13314 95 NMPLDEDQS-----VQFTTTMFALIRENLSIK------MRCADEMD--QADEELRDTIRSIWPIESKKMLNLLLPNK 158 (161)
Q Consensus 95 ~ip~~~~g~-----V~F~dvL~al~~~~~~~~------~~~~~~~~--~~~~el~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
..|+.++|. +|..|+..++-....+-. +.+-.++. ++-..+.+.+.+.||+...++.=+.||.+
T Consensus 210 ~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dR 286 (331)
T KOG0747|consen 210 EYPIHGDGLQTRSYLYVEDVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDR 286 (331)
T ss_pred CcceecCcccceeeEeHHHHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCC
Confidence 477777764 899999999854333311 11112333 44578888899999988766655555543
No 103
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=39.42 E-value=2e+02 Score=24.70 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=22.5
Q ss_pred HHHHhCCCCCCCCceehHHHHHHHHHHHhcc
Q psy13314 90 KLIRMNMPLDEDQSVQFTTTMFALIRENLSI 120 (161)
Q Consensus 90 ~l~~l~ip~~~~g~V~F~dvL~al~~~~~~~ 120 (161)
.+..-.+|....-++||++|+..+-+++-..
T Consensus 80 d~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~ 110 (362)
T PF03969_consen 80 DLFYDSLPIKRKRRVHFHEFMLDVHSRLHQL 110 (362)
T ss_pred HHHHHhCCccccccccccHHHHHHHHHHHHH
Confidence 3333368887777899999998877766543
No 104
>PHA02943 hypothetical protein; Provisional
Probab=38.10 E-value=1.1e+02 Score=23.64 Aligned_cols=67 Identities=6% Similarity=0.090 Sum_probs=49.8
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHhccc
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIK 121 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~~~~ 121 (161)
-+.|++.|...-...-.||...+|.+++.. . .+.+++.+--+|++ .-.-|...||..+.+..+|.+
T Consensus 77 ~~~~Relwrlv~s~~~kfi~p~~l~~li~k----------d---~~a~~~~ak~v~v~-~r~a~il~fln~~l~~l~gep 142 (165)
T PHA02943 77 FEIKRELWRLVCNSRLKFITPSRLLRLIAK----------D---TEAHNIFAKYVPVN-SRHAHILSFLNSALEMLYGEP 142 (165)
T ss_pred HHHHHHHHHHHHhccccccChHHHHHHHHh----------C---HHHHHHHHHhcCcc-cchHHHHHHHHHHHHHHhCCC
Confidence 578999999999999999999999999887 2 23335555578874 344566777877777778854
Q ss_pred c
Q psy13314 122 M 122 (161)
Q Consensus 122 ~ 122 (161)
.
T Consensus 143 ~ 143 (165)
T PHA02943 143 Y 143 (165)
T ss_pred c
Confidence 4
No 105
>KOG2302|consensus
Probab=37.84 E-value=24 Score=35.00 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcCCHHHHHHH
Q psy13314 3 GATGEALANIMLMLNLFVAVIMDNFDYLTRDSSILGAHHLDEF 45 (161)
Q Consensus 3 ~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~~~lt~e~l~~F 45 (161)
||+--.|.-+|.|+||-.-||--+|++..+.++.+-.||-..|
T Consensus 369 yfilliivgsffminKOGvviatqfsetkqresqlmreqr~r~ 411 (1956)
T KOG2302|consen 369 YFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRQRY 411 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 6677777789999999999999999987766655555555444
No 106
>PHA03164 hypothetical protein; Provisional
Probab=37.13 E-value=45 Score=22.60 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=11.8
Q ss_pred hHHHHHH-------HHHHHHHHHHHHH
Q psy13314 5 TGEALAN-------IMLMLNLFVAVIM 24 (161)
Q Consensus 5 ~~~~~~~-------~~I~lNLfIavIl 24 (161)
|+||++. +.|+--|-||+||
T Consensus 46 tawnlwnnrRktftFlvLtgLaIamIL 72 (88)
T PHA03164 46 TAWNLWNNRRKTFTFLVLTGLAIAMIL 72 (88)
T ss_pred hhHHHHHhhhheeehHHHHHHHHHHHH
Confidence 6777765 4445555555554
No 107
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=35.73 E-value=43 Score=24.08 Aligned_cols=40 Identities=20% Similarity=0.289 Sum_probs=23.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHhhhhhhhhccC---cCCHHHHHHHHHH
Q psy13314 2 SGATGEALANIMLMLNLFVAVIMDNFDYLTRDSS---ILGAHHLDEFVRI 48 (161)
Q Consensus 2 ~~~~~~~~~~~~I~lNLfIavIle~f~~~~~~~~---~lt~e~l~~F~~~ 48 (161)
+|+|+||..- |+ .-|||=|+.+.-+.. .+.-+|+..|..+
T Consensus 43 ~g~t~~~~~~--Il-----~~iLelfE~aaadgk~v~dv~GdDvA~F~D~ 85 (111)
T COG4817 43 SGPTGWNEMK--IL-----GNILELFEEAAADGKEVTDVLGDDVATFCDA 85 (111)
T ss_pred cCcchhHHHH--HH-----HHHHHHHHHHHhccccHHHHhcchHHHHHHH
Confidence 4688888533 11 335888887654432 2445677777644
No 108
>KOG1955|consensus
Probab=35.44 E-value=1.4e+02 Score=27.50 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
.||+|+-+-|.+-|+-.-||-.|||+-+--..|...-.-| -.++.+|..| -+.+.||-....||+-|+--
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklp---------i~ELshIWeL-sD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLP---------IEELSHIWEL-SDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCc---------hHHHHHHHhh-cccCccccccHHHHHhhHhh
Confidence 4899999999999999999999999999888888774222 2456667654 24567899999999877643
No 109
>KOG2562|consensus
Probab=33.58 E-value=1.2e+02 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=17.9
Q ss_pred ccCCCCCcceeHHHHHHHHHhcC
Q psy13314 51 EYDPNATGKIHYKEAVEMLRNIE 73 (161)
Q Consensus 51 ~fDp~~tG~I~~~~L~~lL~~L~ 73 (161)
.+-...+|.|+++++..|+-++.
T Consensus 323 ~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 323 GFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred cceeeecCcccHHHHHHHHHHhc
Confidence 56667788888888888888863
No 110
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=33.09 E-value=42 Score=21.84 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.5
Q ss_pred hccCCCCCcceeHHHHHHHHHh
Q psy13314 50 AEYDPNATGKIHYKEAVEMLRN 71 (161)
Q Consensus 50 ~~fDp~~tG~I~~~~L~~lL~~ 71 (161)
..||++.+.||..+++..+++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4699999999999999999998
No 111
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=32.49 E-value=32 Score=23.75 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhccCC
Q psy13314 40 HHLDEFVRIWAEYDP 54 (161)
Q Consensus 40 e~l~~F~~~W~~fDp 54 (161)
.+.+.|+++|+.||-
T Consensus 83 ~~~~~Fk~~f~~fD~ 97 (98)
T PF04676_consen 83 QDAEAFKKAFKPFDW 97 (98)
T ss_pred HHHHHHHHHccCcCC
Confidence 346789999999994
No 112
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=32.20 E-value=58 Score=24.62 Aligned_cols=52 Identities=12% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHH
Q psy13314 39 AHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLI 92 (161)
Q Consensus 39 ~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~ 92 (161)
..+++.|-+.=...|....+|+++++|.+.+-.+...|.-. .|-++.++.+.
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~--~P~Ee~Lrql~ 116 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQS--VPLEEQLRQLQ 116 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence 46789999999999999999999999999999988887554 46665444443
No 113
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=31.36 E-value=39 Score=26.65 Aligned_cols=86 Identities=15% Similarity=0.310 Sum_probs=52.6
Q ss_pred HHHHHHHhhhhhhhhccCcCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHH----
Q psy13314 18 LFVAVIMDNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIR---- 93 (161)
Q Consensus 18 LfIavIle~f~~~~~~~~~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~---- 93 (161)
||=.+.||.|+.=-.=..++. --+.|+++|..|||+.--..+-+++..+|..- |+= -++..++..+.
T Consensus 32 LFE~l~Le~fQAGLSW~tVL~--KRe~freaF~~Fd~~kVA~~~~~dverLl~d~----gII---R~r~KI~A~i~NA~~ 102 (188)
T COG2818 32 LFELLCLEGFQAGLSWLTVLK--KREAFREAFHGFDPEKVAAMTEEDVERLLADA----GII---RNRGKIKATINNARA 102 (188)
T ss_pred HHHHHHHHHHhccchHHHHHH--hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc----chh---hhHHHHHHHHHHHHH
Confidence 566777888862000001222 25899999999999999999999999999983 662 33443333221
Q ss_pred -hCCCCCCCCceehHHHHHHHHH
Q psy13314 94 -MNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 94 -l~ip~~~~g~V~F~dvL~al~~ 115 (161)
+++. ...-+|.++|.+.+.
T Consensus 103 ~l~l~---~e~Gsf~~flWsf~~ 122 (188)
T COG2818 103 VLELQ---KEFGSFSEFLWSFVG 122 (188)
T ss_pred HHHHH---HHcCCHHHHHHHhcC
Confidence 1221 223357777765544
No 114
>KOG2643|consensus
Probab=30.58 E-value=57 Score=29.21 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=0.0
Q ss_pred HhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHH-hCCCCCCCCceehHHHHHHHHHHH
Q psy13314 48 IWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIR-MNMPLDEDQSVQFTTTMFALIREN 117 (161)
Q Consensus 48 ~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~-l~ip~~~~g~V~F~dvL~al~~~~ 117 (161)
+|..||.+++|.+++.++..+|+. ++.. +..|.+.+-.=.+..+... ++.+
T Consensus 430 vF~IFD~N~Dg~LS~~EFl~Vmk~------------------Rmhrgl~~p~~~gl~~~~~~v~kc-~k~~ 481 (489)
T KOG2643|consen 430 VFTIFDENNDGTLSHKEFLAVMKR------------------RMHRGLELPKDTGLLRYMKAVKKC-IKEV 481 (489)
T ss_pred EEEEEccCCCCcccHHHHHHHHHH------------------HhhccccCCcccchHHHHHHHHHH-HHhh
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=30.20 E-value=68 Score=22.19 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=23.1
Q ss_pred HHHHHHHhhccCCCCCcceeHHHHHHHHHhc
Q psy13314 42 LDEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72 (161)
Q Consensus 42 l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L 72 (161)
.++|+..|+.+ -+.+|.+....|..+|+++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~ 31 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDV 31 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHH
Confidence 36788889888 5889999999999999985
No 116
>TIGR01630 psiM2_ORF9 phage uncharacterized protein (putative large terminase), C-terminal domain. This model represents the C-terminal region of a set of phage proteins typically about 400-500 amino acids in length, although some members are considerably shorter. An article on Methanobacterium phage Psi-M2 (PubMed:9791169) calls the member from that phage, ORF9, a putative large terminase subunit, and ORF8 a candidate terminase small subunit. Most proteins in this family have an apparent P-loop nucleotide-binding sequence toward the N-terminus.
Probab=29.93 E-value=1.2e+02 Score=21.92 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccCCCC-------CcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHH---
Q psy13314 40 HHLDEFVRIWAEYDPNA-------TGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTT--- 109 (161)
Q Consensus 40 e~l~~F~~~W~~fDp~~-------tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dv--- 109 (161)
+-.+...+.|.+|.++. -|......|...++.-+.++.+....|+.....++.. -.|..++|+|.|.+-
T Consensus 30 ~~~~~i~~~~~~~~~~~~~~E~~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~K~~Ri~~-~~p~~e~G~V~~~~~~~~ 108 (142)
T TIGR01630 30 ETERLVIRLLNAHRVNLAIIESNQEGKSFGRSLVKILKEKGIRTPARAVYPSGDKETRILS-VAPWVEAGNVFPPNWAPW 108 (142)
T ss_pred HHHHHHHHHHHHcCCcceeeeccccchHHHHHHHHHHHhhCCCCCceeeCCCCChHHhhhc-cHHHHHcCeEeCCCcchh
Confidence 33667777787777655 2233334455555443545554333455444445655 467778999988543
Q ss_pred HHHHHHHHhccc
Q psy13314 110 MFALIRENLSIK 121 (161)
Q Consensus 110 L~al~~~~~~~~ 121 (161)
+..+...+...+
T Consensus 109 ~~~l~~el~~Fp 120 (142)
T TIGR01630 109 WPDLIQALEAFP 120 (142)
T ss_pred HHHHHHHHHhcc
Confidence 556655555543
No 117
>KOG4666|consensus
Probab=28.51 E-value=1.2e+02 Score=26.40 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=12.9
Q ss_pred HHHHhhccCCCCCcceeHHHHHHHHHh
Q psy13314 45 FVRIWAEYDPNATGKIHYKEAVEMLRN 71 (161)
Q Consensus 45 F~~~W~~fDp~~tG~I~~~~L~~lL~~ 71 (161)
.+-+|++||-+-+|++..++|.-++..
T Consensus 298 iq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 298 IQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred HHHHHHhcccccccccchHHHHHHHHH
Confidence 344444444444454444444444444
No 118
>CHL00129 rpl1 ribosomal protein L1; Reviewed
Probab=28.20 E-value=1.1e+02 Score=24.80 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=33.0
Q ss_pred cCCHHH-HHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCC
Q psy13314 36 ILGAHH-LDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCP 83 (161)
Q Consensus 36 ~lt~e~-l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p 83 (161)
.++.+| ++.+++.|.+||- +|...++...+..|++-||=.+.-|
T Consensus 93 ~vg~edLi~~ik~~~~~fd~----~iAt~d~m~~l~kLgriLGprGlMP 137 (229)
T CHL00129 93 IVGSDDLIEEITKGNLDFDL----LIATPDMMPKLAKLGRVLGPRGLMP 137 (229)
T ss_pred EeCHHHHHHHHHcCcccCCE----EEECHHHHHHHHHhcCcccccCCCC
Confidence 466665 6788999987774 8888888888888988888544334
No 119
>KOG4666|consensus
Probab=28.13 E-value=1.8e+02 Score=25.24 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=58.8
Q ss_pred HHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHHHHhccc-
Q psy13314 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIK- 121 (161)
Q Consensus 43 ~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~~~~~~~- 121 (161)
+.....+..||..+||-+.+.+-..-++-|-.| |.-..+-++..-...+..||.+-= ..|..+.+.+++..
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p-------~~t~~iiq~afk~f~v~eDg~~ge-~~ls~ilq~~lgv~~ 330 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGP-------PVTPVIIQYAFKRFSVAEDGISGE-HILSLILQVVLGVEV 330 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCC-------CCcHHHHHHHHHhcccccccccch-HHHHHHHHHhcCcce
Confidence 678889999999999999998887777766555 332322222211234556776654 56667777777753
Q ss_pred --ccC----cc--chhHHHHHHHHHHHhhCcCcccc
Q psy13314 122 --MRC----AD--EMDQADEELRDTIRSIWPIESKK 149 (161)
Q Consensus 122 --~~~----~~--~~~~~~~el~~~~~~~~~~~~~~ 149 (161)
++. -+ +...+-.+--++|+...|+..+.
T Consensus 331 l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 331 LRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred eeccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 111 01 11123233334477777776643
No 120
>KOG1029|consensus
Probab=27.97 E-value=1.2e+02 Score=29.33 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHH
Q psy13314 37 LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFAL 113 (161)
Q Consensus 37 lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al 113 (161)
+....--.|+.+|+-.|+.-+|+++-.+-...|-.- |+ |+ ..+.+|..| -+++.||+..++||..+|
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~L----pq-~~LA~IW~L-sDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS----GL----PQ-NQLAHIWTL-SDVDGDGKLSADEFILAM 255 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHHHhc----CC----ch-hhHhhheee-eccCCCCcccHHHHHHHH
Confidence 555566789999999999999999998886666552 33 32 233345432 356789999999998776
No 121
>KOG2383|consensus
Probab=27.89 E-value=2.6e+02 Score=25.09 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.8
Q ss_pred CCCCCCceehHHHHHHHHHHHhc
Q psy13314 97 PLDEDQSVQFTTTMFALIRENLS 119 (161)
Q Consensus 97 p~~~~g~V~F~dvL~al~~~~~~ 119 (161)
|+....+|||++++...-+++=+
T Consensus 140 ~i~rkqRvHFh~fM~~VH~r~H~ 162 (467)
T KOG2383|consen 140 PIWRKQRVHFHGFMLSVHKRMHE 162 (467)
T ss_pred chhhhhhhhHHHHHHHHHHHHHH
Confidence 35556789999999999887543
No 122
>KOG2562|consensus
Probab=27.74 E-value=1.5e+02 Score=26.70 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCC----CCCCCceehHHHHHHH
Q psy13314 38 GAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMP----LDEDQSVQFTTTMFAL 113 (161)
Q Consensus 38 t~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip----~~~~g~V~F~dvL~al 113 (161)
|-++...-+-.+-..|.+.+|.|.-.+|...=.. .-+...+.+|.+ .+| ...+|+++|.||+.-+
T Consensus 273 S~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~----------tlt~~ivdRIFs-~v~r~~~~~~eGrmdykdFv~Fi 341 (493)
T KOG2562|consen 273 SYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH----------TLTERIVDRIFS-QVPRGFTVKVEGRMDYKDFVDFI 341 (493)
T ss_pred eHHHHHHHHHHHhhhccccccccCHHHHHHHhcc----------chhhHHHHHHHh-hccccceeeecCcccHHHHHHHH
Confidence 3333333333377889999999999998765443 244455667776 444 4567889988888433
No 123
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=26.74 E-value=86 Score=17.96 Aligned_cols=16 Identities=50% Similarity=0.763 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy13314 5 TGEALANIMLMLNLFVAV 22 (161)
Q Consensus 5 ~~~~~~~~~I~lNLfIav 22 (161)
|+|.+ .++-+|..+|-
T Consensus 16 t~Wa~--llLaINflVAa 31 (37)
T PF08078_consen 16 TGWAL--LLLAINFLVAA 31 (37)
T ss_dssp HHHHH--HHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHH
Confidence 67887 56667777663
No 124
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=26.38 E-value=95 Score=21.83 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=26.2
Q ss_pred CcchHHHHHHHHHHH--H-HHHHHHHhhhhhhh-hccCcCCHHHHHHHHHHh
Q psy13314 2 SGATGEALANIMLML--N-LFVAVIMDNFDYLT-RDSSILGAHHLDEFVRIW 49 (161)
Q Consensus 2 ~~~~~~~~~~~~I~l--N-LfIavIle~f~~~~-~~~~~lt~e~l~~F~~~W 49 (161)
||..|.++...+--. . +=+..++.+|.... .....+++++++.....+
T Consensus 26 SYalG~~iG~~l~~~~~~~ld~~~~~~Gi~dal~~~~~~l~~~e~~~~l~~~ 77 (124)
T PF01346_consen 26 SYALGVQIGQQLKQQGFEQLDIDAFLAGIRDALAGKKPKLSDEEAQEALQAF 77 (124)
T ss_dssp HHHHHHHHHHHHHHHCHCC--HHHHHHHHHHHHCTT--SS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHhcCCcCCCHHHHHHHHHHH
Confidence 677777766655422 1 44566777777655 334467877766655444
No 125
>KOG1707|consensus
Probab=25.43 E-value=1e+02 Score=28.56 Aligned_cols=40 Identities=13% Similarity=0.282 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCC
Q psy13314 36 ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPP 75 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~P 75 (161)
.+++.-++-+..++.+||.+++|-.+.++|..+....+.+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~ 347 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGS 347 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCC
Confidence 4788889999999999999999999999999999987554
No 126
>KOG4347|consensus
Probab=24.33 E-value=3.5e+02 Score=25.50 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=46.6
Q ss_pred cCCHHHHHHHHHHhh-----------ccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCce
Q psy13314 36 ILGAHHLDEFVRIWA-----------EYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSV 104 (161)
Q Consensus 36 ~lt~e~l~~F~~~W~-----------~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V 104 (161)
.+|.+|++..+.++. .-||+-.++..+.+...+..-...++-|. .+..-..++.. ..+...+|-+
T Consensus 497 ~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~---~s~~~~~rlF~-l~D~s~~g~L 572 (671)
T KOG4347|consen 497 SLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWA---VSLIFLERLFR-LLDDSMTGLL 572 (671)
T ss_pred ccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchh---HHHHHHHHHHH-hcccCCccee
Confidence 488899888888775 34666555444433333333333333332 12222345553 5666778999
Q ss_pred ehHHHHHHHHHHH
Q psy13314 105 QFTTTMFALIREN 117 (161)
Q Consensus 105 ~F~dvL~al~~~~ 117 (161)
.|.|+...|.+-.
T Consensus 573 tf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 573 TFKDLVSGLSILK 585 (671)
T ss_pred EHHHHHHHHHHHH
Confidence 9999998887644
No 127
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.21 E-value=43 Score=26.12 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhhhhhccC-cCCHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHh
Q psy13314 17 NLFVAVIMDNFDYLTRDSS-ILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRN 71 (161)
Q Consensus 17 NLfIavIle~f~~~~~~~~-~lt~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~ 71 (161)
.||=..+||.|+-=- ... .+.+ -+.|+++|..|||+.--..+-.++..+|..
T Consensus 29 ~LFE~L~Le~fQAGL-SW~tIL~K--r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d 81 (179)
T TIGR00624 29 ALFERMSLEGFQAGL-SWITVLRK--RENYRRAFSGFDIVKVARMTDADVERLLQD 81 (179)
T ss_pred HHHHHHHHHHHhCcC-CHHHHHHh--HHHHHHHHcCCCHHHHhCCCHHHHHHHhcC
Confidence 477788888886200 011 2333 589999999999998888888999888876
No 128
>COG1485 Predicted ATPase [General function prediction only]
Probab=21.99 E-value=5.4e+02 Score=22.48 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccCCCCCcceeHHHHHHHHHh-cCCCCc---CCCCCCCHHHHHHHHHhCCCCCCCCceehHHHHHHHHH
Q psy13314 40 HHLDEFVRIWAEYDPNATGKIHYKEAVEMLRN-IEPPLG---FGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115 (161)
Q Consensus 40 e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~-L~~PLG---~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL~al~~ 115 (161)
...+.....|..+.+...+.= -|..+..+ -++|=| ||+..-.+.-+..+..-.+|.....++||++|+..+-+
T Consensus 32 ~a~~~Ldrl~~~~~~~~~~~~---~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~ 108 (367)
T COG1485 32 AAAAALDRLYDELVAPRSARK---ALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQ 108 (367)
T ss_pred HHHHHHHHHHHHhhccccccc---ccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHH
Confidence 334555555554444433322 45555555 223333 23222234423333333699877789999999998888
Q ss_pred HHhcc
Q psy13314 116 ENLSI 120 (161)
Q Consensus 116 ~~~~~ 120 (161)
++...
T Consensus 109 ~l~~l 113 (367)
T COG1485 109 RLHTL 113 (367)
T ss_pred HHHHH
Confidence 77554
No 129
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.95 E-value=1.1e+02 Score=21.88 Aligned_cols=11 Identities=27% Similarity=0.643 Sum_probs=7.7
Q ss_pred HHHHHHHHHHH
Q psy13314 12 IMLMLNLFVAV 22 (161)
Q Consensus 12 ~~I~lNLfIav 22 (161)
.||+|||+.+.
T Consensus 34 PFilLnl~lS~ 44 (108)
T PF06210_consen 34 PFILLNLVLSL 44 (108)
T ss_pred cHHHHHHHHHH
Confidence 47888887543
No 130
>KOG1688|consensus
Probab=20.53 E-value=97 Score=24.27 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=15.6
Q ss_pred HHHHHHHHH---HHHHHHHHHHhhhh
Q psy13314 6 GEALANIML---MLNLFVAVIMDNFD 28 (161)
Q Consensus 6 ~~~~~~~~I---~lNLfIavIle~f~ 28 (161)
||-|||-=+ +||||||-.-=.++
T Consensus 62 G~YII~Y~LgIYlLNlfiaFLtPk~D 87 (188)
T KOG1688|consen 62 GFYIITYALGIYLLNLFIAFLTPKVD 87 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455555322 69999998876666
No 131
>KOG0751|consensus
Probab=20.40 E-value=4e+02 Score=24.61 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhhccCCCCCcceeHHHHHHHHHhcCCCCcCCCCCCCHHHHHHHHHhCCCCCCCCceehHHHH
Q psy13314 38 GAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTM 110 (161)
Q Consensus 38 t~e~l~~F~~~W~~fDp~~tG~I~~~~L~~lL~~L~~PLG~~~~~p~~~~~k~l~~l~ip~~~~g~V~F~dvL 110 (161)
.+++++..--.++.-+.++.-++..+++...-.-| ++-. .++...++ |.+-=.+...||-|+|.||+
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL---~~e~--~~n~~~v~-Lla~iaD~tKDglisf~eF~ 97 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGL---YNES--NFNDKIVR-LLASIADQTKDGLISFQEFR 97 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhh---cccc--cCChHHHH-HHHhhhhhcccccccHHHHH
Confidence 34555555555566677888888888875554443 3332 34444332 22212334567778888776
No 132
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=20.33 E-value=1.2e+02 Score=15.22 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=12.7
Q ss_pred CCCCCcceeHHHHHHHHH
Q psy13314 53 DPNATGKIHYKEAVEMLR 70 (161)
Q Consensus 53 Dp~~tG~I~~~~L~~lL~ 70 (161)
|-+++|.|+.-|+.-+-+
T Consensus 1 DvN~DG~vna~D~~~lk~ 18 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLKK 18 (21)
T ss_dssp -TTSSSSSSHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHH
Confidence 567889998888765543
Done!