RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13314
(161 letters)
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 127 bits (320), Expect = 1e-38
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 13 MLMLNLFVAVIMDNFDYLTRDSSI-LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
++ +A +NF T +S+ L + F +W ++DP+AT I + + +
Sbjct: 14 LVPRGSHMAS--ENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADA 71
Query: 72 IEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIKMRCADEMDQA 131
++PPL + LI M++P+ + +FA + L + EMD
Sbjct: 72 LDPPLLIAKPNKVQ-----LIAMDLPMVSGDRIHCLDILFAFTKRVLGE----SGEMDAL 122
Query: 132 DEELRD 137
++ +
Sbjct: 123 RIQMEE 128
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 117 bits (293), Expect = 4e-34
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 25 DNFDYLTRDSSI-LGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCP 83
+NF T +S+ L D F IW ++DP AT I Y + + PL P
Sbjct: 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAK--P 58
Query: 84 DRLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIKMRCADEMDQADEELRDTIRSIW 143
+++ LI M++P+ + +FA + + + EMD ++ + +
Sbjct: 59 NQI---SLINMDLPMVSGDRIHCMDILFAFTKRV----LGESGEMDALKIQMEEKFMAAN 111
Query: 144 P 144
P
Sbjct: 112 P 112
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C;
calmodulin-bound, coiled coil, acetylation, methylation,
phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB:
3oxq_E
Length = 81
Score = 73.7 bits (181), Expect = 3e-18
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 106 FTTTMFALIRENLSIKMRCADEMDQADEELRDTIRSIWPIESKKMLNLLLPNKS 159
+T+FAL+R L IK ++QA+EELR I+ IW S K+L+ ++P
Sbjct: 3 LGSTLFALVRTALRIKT--EGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPAG 54
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 47.4 bits (113), Expect = 3e-07
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 13 MLMLNLFVAVIMDNFDYLTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
+M+NL VA+ +D L + H +DE + +E + L+ +
Sbjct: 225 FVMINLVVAICVDAMAILNQKEE---QHIIDEVQSHEDNINNEIIK---LREEIVELKEL 278
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 35.6 bits (82), Expect = 0.003
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQ 102
+F IW +D + +G + KE +++ L K + ++ +
Sbjct: 16 SQFFEIWLHFDADGSGYLEGKELQNLIQE----LLQARKKAGLELSPEMKTFVDQYGQRD 71
Query: 103 S-----VQFTTTMFALIRENLSIKMRCADEMDQADEELRD 137
V+ + L + + EE
Sbjct: 72 DGKIGIVELAHVLPTEENFLLLFRCQQLKS----CEEFMK 107
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 33.8 bits (78), Expect = 0.013
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 13 MLMLNLFVAVIMDNFD 28
+ +LNL +A+++D
Sbjct: 209 ITILNLVIAILVDVVI 224
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.033
Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 32/160 (20%)
Query: 23 IMDNFDYLTRDSSILGAHHLDEFVRIWAEYDP----NATGKIHYKEAVEMLRNIEPP--- 75
+M R S++ ++++ R++ + N + Y + + L + P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 76 -----LGFGSKCPDRLAAKKL----IRMNMP-----------LDEDQSVQFTTTMFALIR 115
LG G +A ++ M + ++ + I
Sbjct: 154 LIDGVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 116 ENLSIKMRCADEMDQADEELRDTIRSIWPIESKKMLNLLL 155
N + + + + ++ +R + ++SK N LL
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLL 248
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 32.7 bits (74), Expect = 0.036
Identities = 13/116 (11%), Positives = 35/116 (30%), Gaps = 3/116 (2%)
Query: 28 DYLTRDSSILGAHHLDEFVR-IWAEYDPNATGKIHYKEAVEMLRNIEPPLG--FGSKCPD 84
D + + + LDE+ + +D N G++ + +L E L
Sbjct: 132 DLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQ 191
Query: 85 RLAAKKLIRMNMPLDEDQSVQFTTTMFALIRENLSIKMRCADEMDQADEELRDTIR 140
+ ++ D ++ +++ +R + D+ +
Sbjct: 192 VERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLT 247
Score = 31.6 bits (71), Expect = 0.093
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 33 DSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLI 92
S F++IW +D + G I KE + R++ L K D +
Sbjct: 1 SDSAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK 60
Query: 93 RMNMPLDEDQS--VQFT--TTMFALIRENLSIKMRCADEMDQADEELR 136
D +Q M EN + R +D + E ++
Sbjct: 61 SFMSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMK 108
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 32.0 bits (73), Expect = 0.077
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 25 DNFDYLTRDS--SILGAHHLDEFV--RIWAEYDPNATGKIHYKEAVEMLRNI 72
D ++ D S+ G HL+ + + D N G + ++E +M++ +
Sbjct: 438 DGNGKISVDELASVFGLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKL 489
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 31.2 bits (71), Expect = 0.12
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 25 DNFDYLTRDS--SILGAHHLDEFV--RIWAEYDPNATGKIHYKEAVEMLRNI 72
DN ++ +I G +D + +E D N G++ + E +ML +
Sbjct: 430 DNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQMLLKL 481
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 30.8 bits (70), Expect = 0.15
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 25 DNFDYLTRD--SSILGAHHLDEFV--RIWAEYDPNATGKIHYKEAVEMLRNI 72
D +T++ +++ G + E + E D N I + E V M+ I
Sbjct: 447 DKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKDNMIDFDEFVSMMHKI 498
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 29.8 bits (67), Expect = 0.16
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPP 75
++F R+W E NA G++ Y + + +
Sbjct: 60 EQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAA 92
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 29.9 bits (67), Expect = 0.26
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQ 102
+ ++ ++D N TGK+ Y E + F S+ D + +
Sbjct: 48 QRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLEN 107
Query: 103 S 103
Sbjct: 108 K 108
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 27.0 bits (60), Expect = 1.2
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 17 NLFVAVIMDNFDYLTRD--SSILGAHHL--DEFVRIWAEYDPNATGKIHYKEAVEMLRNI 72
+F+ D +++ I L IW+ D GK+ + I
Sbjct: 14 EIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLI 73
Query: 73 EPPLGFGSKCPDRL 86
L G P L
Sbjct: 74 SQKLIKGIDPPHVL 87
Score = 25.0 bits (55), Expect = 5.6
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
++ I+ + D + G + E E+
Sbjct: 10 AKYDEIFLKTDKDMDGFVSGLEVREIFLK 38
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 25 DNFDYLTRDS--SILGAHHLDEFVRIW----AEYDPNATGKIHYKEAVEMLRNI 72
D ++ + + + D N G++ + E VEML+N
Sbjct: 429 DGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQNF 482
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomi protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
PDB: 3rf6_A*
Length = 352
Score = 27.8 bits (61), Expect = 1.8
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 63 KEAVEMLRNIEPPLGF----GSKCPDRLAAKKLIRMNMPLDEDQSVQFTTTMFALIR 115
+A+++L + P G ++++ + Q +Q T +L+
Sbjct: 35 SDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSHTPYKSLVN 91
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil,
interferon antiviral system evasion, RNA replication,
RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB:
3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Length = 129
Score = 26.7 bits (58), Expect = 2.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 30 LTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPL 76
L +DS+ L H EF AE D I + V + ++ PP+
Sbjct: 38 LGKDSNSLDIIH-AEFQASLAEGDSPQCALIQITKRVPIFQDAAPPV 83
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition,
double stranded VIR viral protein,RNA binding protein;
1.65A {Marburg virus}
Length = 146
Score = 26.7 bits (58), Expect = 2.8
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 30 LTRDSSILGAHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPL 76
+ S GA D F +I +E + + + PP+
Sbjct: 55 IAYKSGKSGAFL-DAFHQILSEGENAQAALTRLSRTFDAFLGVVPPV 100
>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction,
TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A
{Clostridium cochlearium} SCOP: c.1.19.2 PDB: 1cb7_B*
1i9c_B*
Length = 483
Score = 27.2 bits (60), Expect = 2.8
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 43 DEFVRIWAEY-DPNATGK-IHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLI---RMNMP 97
+EF + E TGK + +EAV+ L+ I F K + R +
Sbjct: 11 EEFHKQREEVLQQWPTGKEVDLQEAVDYLKKIPAEKNFAEKLVLAKKKGITMAQPRAGVA 70
Query: 98 LDEDQ 102
L ++
Sbjct: 71 LLDEH 75
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 25.9 bits (57), Expect = 3.3
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
+ +V + P+ + I A
Sbjct: 22 EYYVNQFRSLQPDPSSFISGSVAKNFFTK 50
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 26.8 bits (60), Expect = 3.4
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFG 79
+ + ++ Y EA+E+LR+ + FG
Sbjct: 262 KILNYEPPEVKIPIKRLKYTEAIEILRSKGYNIKFG 297
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 26.8 bits (60), Expect = 3.5
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 44 EFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFG 79
+ + E ++ Y +A+E+L ++ + +G
Sbjct: 267 DILNFELEEPKLPFPRVSYDKALEILGDLGKEIPWG 302
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 25.5 bits (56), Expect = 5.7
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
++ +++ +D +G + +A +L
Sbjct: 14 LKYRQLFNSHDKTMSGHLTGPQARTILMQ 42
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 26.3 bits (58), Expect = 5.7
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 39 AHHLDEFVRIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKL 91
+ D F A + + + + +EP FG++ +R K+L
Sbjct: 338 KYDADWFRAEVAGFCDEVLITDDHTVVGDAIARVEPAAIFGTQ-MERHVGKRL 389
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 26.0 bits (58), Expect = 6.0
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 63 KEAVEMLRNIEPPLGF----GSKCPDRLAAKKLIRMNMPLDEDQ 102
+EA++ LR + F + L + L ++ + ED+
Sbjct: 29 QEALKRLRATSVMVRFVTNTTKETKKDLLER-LKKLEFEISEDE 71
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
binding site AN site being FAR from EACH other,
structural genomics, PSI; HET: GDP; 2.00A {Aquifex
aeolicus} SCOP: a.211.1.1
Length = 371
Score = 26.0 bits (57), Expect = 6.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 24 MDNFDYLTRDSSILGAHH 41
D DYL RD+ G +
Sbjct: 160 SDRMDYLRRDAYFCGVSY 177
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 24.7 bits (54), Expect = 7.0
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
+V + P+ G I A E
Sbjct: 9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTK 37
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 26.0 bits (56), Expect = 7.9
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 47 RIWAEYDPNATGKIHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDEDQSVQF 106
+ D N K+++KE + L+ + ++ ++ D Q+
Sbjct: 15 SCLRKADKNKDNKMNFKELKDFLKELNI----------QVDDGYARKIFRECDHSQTDSL 64
Query: 107 TTTMFALI 114
Sbjct: 65 EDEEIETF 72
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide
triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Length = 528
Score = 25.9 bits (56), Expect = 8.3
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 24 MDNFDYLTRDSSILGAHHLDEFVRI 48
+D +DY RD LG + ++ R
Sbjct: 212 VDKWDYFARDCHHLGIQNNFDYKRF 236
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 25.6 bits (57), Expect = 9.1
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 11/42 (26%)
Query: 60 IHYKEAVEMLRNIEPPLGFGSKCPDRLAAKKLIRMNMPLDED 101
+H K++ E + I+ + + R+ E+
Sbjct: 467 VHDKKSWEEMNAIQ-----------EYFQRPITRVPTDDYEE 497
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 25.2 bits (56), Expect = 9.3
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
+E +WA + P+ G + YK ++ +
Sbjct: 131 EEIKNMWAAFPPDVAGNVDYKNICYVITH 159
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA
ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces
cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A*
1asz_A*
Length = 487
Score = 25.7 bits (57), Expect = 9.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 59 KIHYKEAVEMLRNIEPPLGFG 79
++ YKE +EMLR +G
Sbjct: 329 RLTYKEGIEMLRAAGKEIGDF 349
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 24.8 bits (55), Expect = 9.9
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 43 DEFVRIWAEYDPNATGKIHYKEAVEMLRN 71
+E ++ E + G +Y E +L++
Sbjct: 112 EEVDEMYREAPIDKKGNFNYVEFTRILKH 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,527,175
Number of extensions: 148878
Number of successful extensions: 602
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 105
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)