Query psy13316
Match_columns 546
No_of_seqs 105 out of 122
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 16:23:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06664 MIG-14_Wnt-bd: Wnt-bi 100.0 1.1E-71 2.3E-76 571.4 29.3 296 177-500 1-298 (298)
2 KOG2568|consensus 92.0 10 0.00023 42.6 18.2 98 239-347 208-315 (518)
3 KOG4453|consensus 90.6 4.3 9.3E-05 41.1 12.1 52 234-286 65-117 (269)
4 PRK14758 hypothetical protein; 78.8 2.7 5.9E-05 28.4 2.9 20 432-451 5-24 (27)
5 PRK10263 DNA translocase FtsK; 71.5 31 0.00067 43.1 11.4 30 340-370 24-53 (1355)
6 PF06814 Lung_7-TM_R: Lung sev 71.5 1.3E+02 0.0028 31.1 20.8 14 488-501 281-294 (295)
7 COG3202 ATP/ADP translocase [E 70.7 1.2E+02 0.0025 34.5 14.8 86 235-324 64-177 (509)
8 PF08733 PalH: PalH/RIM21; In 67.7 1.1E+02 0.0024 32.9 13.6 23 433-455 264-286 (348)
9 KOG4016|consensus 55.1 1.3E+02 0.0028 30.4 10.4 137 337-496 22-166 (233)
10 PF10726 DUF2518: Protein of f 53.7 53 0.0011 31.2 7.1 57 435-503 12-68 (145)
11 PF06454 DUF1084: Protein of u 52.0 3E+02 0.0065 28.7 18.0 17 306-324 107-123 (281)
12 KOG4193|consensus 50.0 4.8E+02 0.01 30.5 16.9 67 250-324 344-412 (610)
13 PF10192 GpcrRhopsn4: Rhodopsi 48.8 3.1E+02 0.0066 27.9 18.3 53 254-307 51-108 (257)
14 PF05393 Hum_adeno_E3A: Human 38.1 49 0.0011 28.9 4.0 27 373-399 27-53 (94)
15 PF09586 YfhO: Bacterial membr 37.1 5.7E+02 0.012 30.2 14.1 11 274-284 313-323 (843)
16 COG4881 Predicted membrane pro 31.2 2.3E+02 0.005 30.1 8.3 93 356-450 129-247 (371)
17 PF11057 Cortexin: Cortexin of 26.6 74 0.0016 27.1 3.1 22 391-412 34-55 (81)
18 PF12911 OppC_N: N-terminal TM 23.8 24 0.00051 27.2 -0.3 32 7-38 10-41 (56)
19 KOG2735|consensus 23.2 1.5E+02 0.0032 32.8 5.4 24 390-413 130-153 (466)
20 PRK00259 intracellular septati 22.7 4.4E+02 0.0095 25.8 8.2 66 239-310 27-92 (179)
21 PRK11598 putative metal depend 22.5 6.4E+02 0.014 28.9 10.6 32 258-289 4-36 (545)
22 TIGR00997 ispZ intracellular s 21.4 1.6E+02 0.0034 28.9 4.8 47 239-285 27-73 (178)
23 PRK10649 hypothetical protein; 21.1 6.2E+02 0.013 29.1 10.3 15 300-314 44-58 (577)
24 PF11044 TMEMspv1-c74-12: Plec 20.5 1.9E+02 0.0042 22.3 4.0 24 391-414 14-37 (49)
25 COG2194 Predicted membrane-ass 20.1 1.2E+03 0.025 27.0 12.1 20 274-293 21-40 (555)
No 1
>PF06664 MIG-14_Wnt-bd: Wnt-binding factor required for Wnt secretion
Probab=100.00 E-value=1.1e-71 Score=571.43 Aligned_cols=296 Identities=47% Similarity=0.836 Sum_probs=278.3
Q ss_pred cccCeeeeeeeeccCCceEEEEEEecCCCccccccccceee-eEEEEEEEeCCCeeeehhhHHHHHHHHHHHHHHHHHHH
Q psy13316 177 YNCSIIPLFELGSLHHDYYLLNVRLPVDNDLNMNTNLGQVE-DMWLVAINQNGGFTKIWLSLKTLFFPCIIAIVIWFWKR 255 (546)
Q Consensus 177 Y~Cd~i~l~~lg~l~y~~YllnI~f~~~~~~~~n~~~g~i~-di~~~~i~~N~~FT~~ei~~r~vf~~~s~i~~~~F~~~ 255 (546)
|+||+++++|+|++||++|+++|+++++++. +++ |++++.++|||+||++|+++|++|+++++++++||+++
T Consensus 1 ~~C~~i~l~~~~~l~y~~Y~i~v~~~~~~~~-------~~~~~i~~~~~~~n~~fT~~~i~~r~~f~~~s~i~~~~f~~~ 73 (298)
T PF06664_consen 1 YNCDPIPLFELGSLDYDYYLINVRFPNPENS-------HINSDINFTFIYQNPSFTQFEIWFRFIFFIISFIVLIWFLYR 73 (298)
T ss_pred CCCceEEEEEEcCccCcEEEEEEEEecCccc-------cccccEEEEEEEecCCceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998863 455 89999999999999999999999999999999999999
Q ss_pred hhhcccCchhHHHHHHH-HHHHHHhhcCccceeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccceeE
Q psy13316 256 VHQLSRTPVLLEYMLLA-LGCALIFLNTPFELITLFYDFPFMILLADIRQGVFYAALLSFWLVFAGEHLMIQDNEQRNQL 334 (546)
Q Consensus 256 lr~l~~~~w~lEQk~~~-Ll~~L~l~N~Pf~~lt~~~~~~~~lll~~i~Q~~F~~~LL~FWLvf~~eh~~i~~~~er~~l 334 (546)
+|++++++|++||||++ |+++|+++|||+|++++.+++|+++++|+++|++|+|+|++|||+++++|++ |++|+++
T Consensus 74 ~~~~~~~~w~~EQk~~~~Ll~~lil~n~P~~~l~~~~~~~~~~~l~~i~q~~F~~~Ll~FwL~~~~~~r~---~~~r~~~ 150 (298)
T PF06664_consen 74 LRKYSRRDWLLEQKWTFALLILLILYNNPFFWLSFFFNSPFFLLLDDIFQSIFYAYLLLFWLVFFDSLRM---QNERKNL 150 (298)
T ss_pred HhhcCCCcchHHHHHHHHHHHHHHHHhChHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCcCce
Confidence 99999999999999998 8999999999999999999999999999999999999999999999988866 8999999
Q ss_pred EEeehhhHHHHHhHHHHHHHHHHHhcccccCcceeeeecccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13316 335 RTYWKHLSGVFTGCLSLFIFDLCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVSAGVYFVFLCYMIWQVFGNISVKRQ 414 (546)
Q Consensus 335 ~fY~pki~~V~~~~l~l~i~~~~~r~~ql~dP~ys~~~~~~~~~~~~~f~i~~~i~~~iY~l~L~~li~r~f~~i~~~r~ 414 (546)
++||||+++|+++|++++++++|+|++|++||+||+|.++.+.+.++++++++++++ |++|++++++||++++
T Consensus 151 ~~y~~ki~~v~~~~~~~~i~~~~~~~~~~~dP~~~~~~~~~~~~~~~~~~~l~~i~~--Y~l~ll~li~rs~~~i----- 223 (298)
T PF06664_consen 151 KFYWPKIILVGLFWLFLFIFDIWERGNQLKDPFYSIWVDDPGFNIAKAFIILAGICA--YFLYLLFLIIRSFSEI----- 223 (298)
T ss_pred EEEhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccCcchhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999999888888887777766 9999999999999666
Q ss_pred cCCCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCCcccccchhhhhhHhhHHHHHHHHHHhh
Q psy13316 415 ALPSMSNVRRLHYEGIIYRFKFLMLVTLLCAAMTIIGFILGQASEGRWKWDEDLHLDYTSAFFTGVYGMWNIYIFALMVL 494 (546)
Q Consensus 415 ~l~~~s~~r~l~y~~ii~R~kfl~~~tli~~~ltv~~f~l~~v~~~~~~~~~~~~~~~~Sa~f~~~ygm~N~Yv~~L~~l 494 (546)
|++++. + |+|+++++|++|+++++++.++++..++++.+++....+.|||+|+++|||||+|+++|+++
T Consensus 224 --------~~~~~~-~--R~kfl~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ssa~f~~~~gl~N~Yv~~l~~l 292 (298)
T PF06664_consen 224 --------RNKRYF-L--RFKFLTLFTLICAAVTVIGLILGFGSEGDNFWSEFSPFYSSSAFFLGFYGLWNFYVYTLAYL 292 (298)
T ss_pred --------ccccHH-H--HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 777777 5 99999999999999999999999999998888843345569999999999999999999999
Q ss_pred ccCCCC
Q psy13316 495 YAPSHK 500 (546)
Q Consensus 495 YsPS~k 500 (546)
|+||||
T Consensus 293 y~Ps~~ 298 (298)
T PF06664_consen 293 YSPSHK 298 (298)
T ss_pred cCCCCC
Confidence 999998
No 2
>KOG2568|consensus
Probab=92.00 E-value=10 Score=42.61 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhhcCccceeee----------eccchhHHHHHHHHHHHHH
Q psy13316 239 TLFFPCIIAIVIWFWKRVHQLSRTPVLLEYMLLALGCALIFLNTPFELITL----------FYDFPFMILLADIRQGVFY 308 (546)
Q Consensus 239 ~vf~~~s~i~~~~F~~~lr~l~~~~w~lEQk~~~Ll~~L~l~N~Pf~~lt~----------~~~~~~~lll~~i~Q~~F~ 308 (546)
+..+..+++.+.|++.+.|- +++-+-=|||+...+.|...---|.+..+ ..-.-|..++++++++..-
T Consensus 208 ~m~laYvllgllW~~~~~~y--~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr 285 (518)
T KOG2568|consen 208 FMCLAYVLLGLLWFFQCAQY--WHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSR 285 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHH
Confidence 34455666677788777764 45555568887644443333233333322 2224456677778877764
Q ss_pred HHHHHHHHHHhhhcccccCcccceeEEEeehhhHHHHHh
Q psy13316 309 AALLSFWLVFAGEHLMIQDNEQRNQLRTYWKHLSGVFTG 347 (546)
Q Consensus 309 ~~LL~FWLvf~~eh~~i~~~~er~~l~fY~pki~~V~~~ 347 (546)
..+ -+|-.||-.. |-++..-+-|.+.++++
T Consensus 286 ~Ll---LIVSlGYGIV------kP~Lg~~l~rv~~ig~~ 315 (518)
T KOG2568|consen 286 LLL---LIVSLGYGIV------KPTLGGTLLRVCQIGVI 315 (518)
T ss_pred HHH---HHHhcCcceE------ecCcchHHHHHHHHhHH
Confidence 433 3444555433 44555455566666653
No 3
>KOG4453|consensus
Probab=90.61 E-value=4.3 Score=41.12 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccCchhHHHHHHHH-HHHHHhhcCccce
Q psy13316 234 WLSLKTLFFPCIIAIVIWFWKRVHQLSRTPVLLEYMLLAL-GCALIFLNTPFEL 286 (546)
Q Consensus 234 ei~~r~vf~~~s~i~~~~F~~~lr~l~~~~w~lEQk~~~L-l~~L~l~N~Pf~~ 286 (546)
|+. |.++.-..-.++..++-..-|...-.|.+|+|++-+ ...++-+|-|+|.
T Consensus 65 eip-rkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi~ifigdlirlnWP~Fs 117 (269)
T KOG4453|consen 65 EIP-RKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFIHIFIGDLIRLNWPIFS 117 (269)
T ss_pred hhc-hhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhHHHHhccHHHH
Confidence 444 445555555566777788888899999999999874 6666778888765
No 4
>PRK14758 hypothetical protein; Provisional
Probab=78.85 E-value=2.7 Score=28.43 Aligned_cols=20 Identities=35% Similarity=0.868 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy13316 432 YRFKFLMLVTLLCAAMTIIG 451 (546)
Q Consensus 432 ~R~kfl~~~tli~~~ltv~~ 451 (546)
|||.++.+..++|+.++.-+
T Consensus 5 YrFEliLivlIlCalia~~f 24 (27)
T PRK14758 5 YRFEFILIILILCALIAARF 24 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998764
No 5
>PRK10263 DNA translocase FtsK; Provisional
Probab=71.51 E-value=31 Score=43.09 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=14.7
Q ss_pred hhHHHHHhHHHHHHHHHHHhcccccCcceee
Q psy13316 340 HLSGVFTGCLSLFIFDLCERGTQLVNPFYSI 370 (546)
Q Consensus 340 ki~~V~~~~l~l~i~~~~~r~~ql~dP~ys~ 370 (546)
.++.++++.++++++... -.+.-.||.+|.
T Consensus 24 E~~gIlLlllAlfL~lAL-iSYsPsDPSwS~ 53 (1355)
T PRK10263 24 EALLILIVLFAVWLMAAL-LSFNPSDPSWSQ 53 (1355)
T ss_pred HHHHHHHHHHHHHHHHHH-HhCCccCCcccc
Confidence 344444444444433222 234458998764
No 6
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=71.49 E-value=1.3e+02 Score=31.08 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=10.5
Q ss_pred HHHHHhhccCCCCC
Q psy13316 488 IFALMVLYAPSHKQ 501 (546)
Q Consensus 488 v~~L~~lYsPS~k~ 501 (546)
..++++++.|+.+.
T Consensus 281 ~~~i~~lwRPs~~n 294 (295)
T PF06814_consen 281 LVAIMYLWRPSENN 294 (295)
T ss_pred HHHHHheeCCCCCC
Confidence 45778899998663
No 7
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=70.73 E-value=1.2e+02 Score=34.53 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=54.1
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHhhhcccCchhHH--HHHHH--HHHHHHhh-------------c-----Cc--cceeee
Q psy13316 235 LSLKTLF-FPCIIAIVIWFWKRVHQLSRTPVLLE--YMLLA--LGCALIFL-------------N-----TP--FELITL 289 (546)
Q Consensus 235 i~~r~vf-~~~s~i~~~~F~~~lr~l~~~~w~lE--Qk~~~--Ll~~L~l~-------------N-----~P--f~~lt~ 289 (546)
.+.|+.+ .|.+++++..|.+-++.++++.---= --+.+ +++.++++ + +| +.|+-+
T Consensus 64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il 143 (509)
T COG3202 64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL 143 (509)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence 4566665 45999999999999999887553311 11111 24555555 2 78 568887
Q ss_pred eccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy13316 290 FYDFPF---MILLADIRQGVFYAALLSFWLVFAGEHLM 324 (546)
Q Consensus 290 ~~~~~~---~lll~~i~Q~~F~~~LL~FWLvf~~eh~~ 324 (546)
.++-|. +-++.-+.-++.++ ++||- ..-|..
T Consensus 144 i~~~Ws~s~~Yi~aELWgslV~S--~lFw~--faNeit 177 (509)
T COG3202 144 IVGEWSYSLFYIMAELWGSLVLS--LLFWQ--FANEIT 177 (509)
T ss_pred eecchHHHHHHHHHHHHHHHHHH--HHHHH--HHHHhh
Confidence 777443 33455577777777 47898 445644
No 8
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=67.74 E-value=1.1e+02 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q psy13316 433 RFKFLMLVTLLCAAMTIIGFILG 455 (546)
Q Consensus 433 R~kfl~~~tli~~~ltv~~f~l~ 455 (546)
+--.|++++++...+.+++||+-
T Consensus 264 ~~~~L~il~~~~i~l~~vffI~d 286 (348)
T PF08733_consen 264 QMIPLAILNLLLILLPVVFFILD 286 (348)
T ss_pred hHHHHHHHHHHHHHHHHHhheeE
Confidence 44578888888888888877655
No 9
>KOG4016|consensus
Probab=55.13 E-value=1.3e+02 Score=30.45 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=72.6
Q ss_pred eehhhHHHHHhHHHHHHHHHHHhcccccCcc-----eeeeecccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13316 337 YWKHLSGVFTGCLSLFIFDLCERGTQLVNPF-----YSIWVTNIGTNVALTFITVAMVSAGVYFVFLCYMIWQVFGNISV 411 (546)
Q Consensus 337 Y~pki~~V~~~~l~l~i~~~~~r~~ql~dP~-----ys~~~~~~~~~~~~~f~i~~~i~~~iY~l~L~~li~r~f~~i~~ 411 (546)
-.||.++=++.|+..+|...+.-.-...||. |-+.- ++..+=.+-+..|+.+. +-=+.||+.-+.
T Consensus 22 rkP~ti~R~~~~lFsliVf~si~~eGy~n~~~~~~~~Ciyn---rn~~ACsyg~avG~~Af--la~~~flvlD~~----- 91 (233)
T KOG4016|consen 22 RKPQTILRVVSWLFSLIVFGSIVNEGYLNSASSGEEFCIYN---RNSNACSYGVAVGVLAF--LACLAFLVLDVY----- 91 (233)
T ss_pred cCchhHHHHHHHHHHHhheeeeccccccCcccCCceEEEEC---CCCcchhHHHHHHHHHH--HHHHHHHHHHhh-----
Confidence 4588888888888877664444333333332 22222 22223333343333222 222334443333
Q ss_pred hhccCCCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHh-hhccCccccC--CCcccccchhhhhhHhhHHHHHH
Q psy13316 412 KRQALPSMSNVRRLHYEGIIYRFKFLMLVTLLCAAMTIIGFILG-QASEGRWKWD--EDLHLDYTSAFFTGVYGMWNIYI 488 (546)
Q Consensus 412 ~r~~l~~~s~~r~l~y~~ii~R~kfl~~~tli~~~ltv~~f~l~-~v~~~~~~~~--~~~~~~~~Sa~f~~~ygm~N~Yv 488 (546)
+|.+|.+|. |=|+.+.=..+.+.-|++. +++ -.+-.+|.-+ .+.-+.-+||.+-..+.++.|..
T Consensus 92 ----f~qISsv~~--------RkraVl~Dl~~Salwtflw-fvGFc~l~nqwqvs~p~~~~~~a~saraaIafsffSils 158 (233)
T KOG4016|consen 92 ----FPQISSVKD--------RKRAVLADLGVSALWAFLW-FVGFCFLANQWQVSKPKENPLGAGSARAAIAFSFFSILS 158 (233)
T ss_pred ----hhhhcccch--------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCCcCcchHHHHHHHHHHHHHH
Confidence 344455554 4445544444444444442 222 2222345444 24455567999999999999999
Q ss_pred HHHHhhcc
Q psy13316 489 FALMVLYA 496 (546)
Q Consensus 489 ~~L~~lYs 496 (546)
+..+.+.|
T Consensus 159 W~~~A~lA 166 (233)
T KOG4016|consen 159 WGGQAVLA 166 (233)
T ss_pred HHHHHHHH
Confidence 99888765
No 10
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=53.71 E-value=53 Score=31.17 Aligned_cols=57 Identities=25% Similarity=0.400 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCccccCCCcccccchhhhhhHhhHHHHHHHHHHhhccCCCCCCC
Q psy13316 435 KFLMLVTLLCAAMTIIGFILGQASEGRWKWDEDLHLDYTSAFFTGVYGMWNIYIFALMVLYAPSHKQWP 503 (546)
Q Consensus 435 kfl~~~tli~~~ltv~~f~l~~v~~~~~~~~~~~~~~~~Sa~f~~~ygm~N~Yv~~L~~lYsPS~k~~~ 503 (546)
|.+...|++.+++|+++|+++ |+ +....-.+ |++-+++-.=+|++..-|.|..+.-+
T Consensus 12 ~W~~~~ti~~~~lTilaFi~~--------WG--~RFRLVGv--T~F~~vLt~g~fal~~~~~~r~~IpG 68 (145)
T PF10726_consen 12 QWLGIATIALAVLTILAFIFK--------WG--IRFRLVGV--TSFMLVLTVGCFALSLSYFPRVVIPG 68 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------cC--ceEEEecH--HHHHHHHHHHHHHheeccCCCccccC
Confidence 568889999999999998877 43 34444222 44556677889999999999877544
No 11
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=51.98 E-value=3e+02 Score=28.69 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhccc
Q psy13316 306 VFYAALLSFWLVFAGEHLM 324 (546)
Q Consensus 306 ~F~~~LL~FWLvf~~eh~~ 324 (546)
+-|+.+++||. -.+|.-
T Consensus 107 Sty~llvlfWa--eIy~~a 123 (281)
T PF06454_consen 107 STYTLLVLFWA--EIYYQA 123 (281)
T ss_pred HHHHHHHHHHH--HHHHHH
Confidence 34677899999 556754
No 12
>KOG4193|consensus
Probab=50.02 E-value=4.8e+02 Score=30.45 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=39.3
Q ss_pred HHHHHHhhhcccCchhHHHHHHHH-HHHHHhhcCc-cceeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy13316 250 IWFWKRVHQLSRTPVLLEYMLLAL-GCALIFLNTP-FELITLFYDFPFMILLADIRQGVFYAALLSFWLVFAGEHLM 324 (546)
Q Consensus 250 ~~F~~~lr~l~~~~w~lEQk~~~L-l~~L~l~N~P-f~~lt~~~~~~~~lll~~i~Q~~F~~~LL~FWLvf~~eh~~ 324 (546)
.++.+.++.-+ .+.+.+-.++| +--++|.++. -.+.... ....+..+.+-.|+++ +||+..-+.|+=
T Consensus 344 y~~~~~l~~~~--~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~----~C~~~a~llhff~Laa--F~Wm~leg~hl~ 412 (610)
T KOG4193|consen 344 YLLFRKLQNDR--TKIHINLCLCLFLAELLFLLGIDRTSTSVV----LCIAAAILLHFFFLAA--FFWMLLEGFHLY 412 (610)
T ss_pred HHHHHHHHhhc--chhHHHHHHHHHHHHHHHhcccccccCccc----ccHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 34444444433 55566666775 3333344433 2333332 5667788888888886 799988888864
No 13
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=48.79 E-value=3.1e+02 Score=27.88 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=24.4
Q ss_pred HHhhhcccCchhHHHHHHHH-----HHHHHhhcCccceeeeeccchhHHHHHHHHHHHH
Q psy13316 254 KRVHQLSRTPVLLEYMLLAL-----GCALIFLNTPFELITLFYDFPFMILLADIRQGVF 307 (546)
Q Consensus 254 ~~lr~l~~~~w~lEQk~~~L-----l~~L~l~N~Pf~~lt~~~~~~~~lll~~i~Q~~F 307 (546)
..+++-...+..++.-..++ +.++.+.|-=.|. .-..+.|.+..++.+++++-
T Consensus 51 ~~l~~~~~~h~~~~l~~~~l~l~~~s~~l~~ih~~~ya-~nG~G~~~l~~~g~i~~~~s 108 (257)
T PF10192_consen 51 QSLKKRGLMHPVYKLFSAALLLQFLSLLLNLIHYIVYA-YNGVGIPFLKVLGQIFDILS 108 (257)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCchhHHHHHHHHHHHH
Confidence 44555555555554433332 2333333322222 33345666666666665543
No 14
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=38.08 E-value=49 Score=28.92 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=18.9
Q ss_pred cccCccchhhHHHHHHHHHHHHHHHHH
Q psy13316 373 TNIGTNVALTFITVAMVSAGVYFVFLC 399 (546)
Q Consensus 373 ~~~~~~~~~~f~i~~~i~~~iY~l~L~ 399 (546)
...+.++.|.|.++++++.++-++|+.
T Consensus 27 ~n~~~~Lgm~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 27 VNNWPNLGMWFLVICGIFILLVILWFV 53 (94)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 344466778888888887776666665
No 15
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=37.09 E-value=5.7e+02 Score=30.24 Aligned_cols=11 Identities=18% Similarity=-0.028 Sum_probs=5.0
Q ss_pred HHHHHhhcCcc
Q psy13316 274 GCALIFLNTPF 284 (546)
Q Consensus 274 l~~L~l~N~Pf 284 (546)
+++++.+..|+
T Consensus 313 l~~~l~~~~p~ 323 (843)
T PF09586_consen 313 LLLLLSFFIPP 323 (843)
T ss_pred HHHHHHHHHHH
Confidence 33444445554
No 16
>COG4881 Predicted membrane protein [Function unknown]
Probab=31.23 E-value=2.3e+02 Score=30.07 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=50.1
Q ss_pred HHHhcccccCcceeeeecc-----cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhccCCC---------
Q psy13316 356 LCERGTQLVNPFYSIWVTN-----IGTNVALTFITVAMVSAGVYFVFLCYMIWQVFGNIS---VKRQALPS--------- 418 (546)
Q Consensus 356 ~~~r~~ql~dP~ys~~~~~-----~~~~~~~~f~i~~~i~~~iY~l~L~~li~r~f~~i~---~~r~~l~~--------- 418 (546)
+.-+....+||+|++.+-- .+..+--..|+++.|.+....+|=.|-=.--+++=+ =|.=++|-
T Consensus 129 ~~y~~~at~n~~y~~lSlG~k~~E~~erlr~~~KiLaii~vil~alw~iYp~~Ll~sqts~~~Wknw~l~ip~~f~~tF~ 208 (371)
T COG4881 129 MAYKAEATGNIIYRILSLGRKYSEDVERLRRVVKILAIIGVILAALWHIYPDILLASQTSRILWKNWSLPIPLLFSATFS 208 (371)
T ss_pred ccchhhhcCCceEEEEeccccchhcchhHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhheeeeecCCccchHHHHHHHH
Confidence 3334567899999985422 222334466788888777666665542111110000 00001100
Q ss_pred ---------ccccccccccchhhhHHHHHHHHHHHHHHHHH
Q psy13316 419 ---------MSNVRRLHYEGIIYRFKFLMLVTLLCAAMTII 450 (546)
Q Consensus 419 ---------~s~~r~l~y~~ii~R~kfl~~~tli~~~ltv~ 450 (546)
.--+|+++-|.+ |..++|+.-+..++++-+
T Consensus 209 ~At~vta~~~y~~r~~~~e~i--~~sll~ihG~AAi~i~~i 247 (371)
T COG4881 209 GATLVTAAYYYAARFSPGESI--DASLLMIHGLAAILITEI 247 (371)
T ss_pred HHHHHHHHHHHHHHhCCcccc--chHHHHHHhHHHHHHHHH
Confidence 012477888887 888888887755555554
No 17
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=26.57 E-value=74 Score=27.06 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q psy13316 391 AGVYFVFLCYMIWQVFGNISVK 412 (546)
Q Consensus 391 ~~iY~l~L~~li~r~f~~i~~~ 412 (546)
+++-++||+++|+|-||.+-.-
T Consensus 34 V~~L~~fL~~liVRCfrIllDP 55 (81)
T PF11057_consen 34 VGLLCLFLGLLIVRCFRILLDP 55 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHcCh
Confidence 4456788999999999877433
No 18
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=23.84 E-value=24 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=25.3
Q ss_pred eecCCCceehhhHHHHHHHHHHhhhcCccccc
Q psy13316 7 ENLSGKKLSVLIAGLVVCQVACFLIGGFVAPN 38 (546)
Q Consensus 7 enLS~rklviv~~~~~~~~~~~flIGgl~aP~ 38 (546)
..+.+.|..+++.+++++.++.-++|.+++|-
T Consensus 10 ~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 10 RRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567788888888888888888888788886
No 19
>KOG2735|consensus
Probab=23.19 E-value=1.5e+02 Score=32.76 Aligned_cols=24 Identities=25% Similarity=0.600 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q psy13316 390 SAGVYFVFLCYMIWQVFGNISVKR 413 (546)
Q Consensus 390 ~~~iY~l~L~~li~r~f~~i~~~r 413 (546)
++++|+++|.|+.++.+.+++.--
T Consensus 130 ~SViYll~L~FlLFQ~~~d~r~~l 153 (466)
T KOG2735|consen 130 VSVIYLLFLQFLLFQTFDDIRQFL 153 (466)
T ss_pred hHHHHHHHHHHHHHhhhHHHHhHh
Confidence 367899999999999998886543
No 20
>PRK00259 intracellular septation protein A; Reviewed
Probab=22.65 E-value=4.4e+02 Score=25.76 Aligned_cols=66 Identities=5% Similarity=0.066 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhhcCccceeeeeccchhHHHHHHHHHHHHHHH
Q psy13316 239 TLFFPCIIAIVIWFWKRVHQLSRTPVLLEYMLLALGCALIFLNTPFELITLFYDFPFMILLADIRQGVFYAA 310 (546)
Q Consensus 239 ~vf~~~s~i~~~~F~~~lr~l~~~~w~lEQk~~~Ll~~L~l~N~Pf~~lt~~~~~~~~lll~~i~Q~~F~~~ 310 (546)
.++.+.+.+.+.+.+.+-|+.+..+|..==-.+++|.+.+++|||-+-. +-+-+++.++-.+|...
T Consensus 27 ~~~i~a~~~~~~~~~~~~~~v~~m~~i~~~lv~vfGglTl~l~d~~fik------~KPtii~~l~a~vll~s 92 (179)
T PRK00259 27 AALIVATVIQLAISWIRYRKVEKMQLISLVVVVVFGGLTLVFHDDTFIK------WKPTIIYWLFALALLGS 92 (179)
T ss_pred HHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhCCCCeEe------eHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888887775444444677788899996544 33445566555555443
No 21
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=22.46 E-value=6.4e+02 Score=28.91 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=19.7
Q ss_pred hcccCchhHHHHHHHH-HHHHHhhcCccceeee
Q psy13316 258 QLSRTPVLLEYMLLAL-GCALIFLNTPFELITL 289 (546)
Q Consensus 258 ~l~~~~w~lEQk~~~L-l~~L~l~N~Pf~~lt~ 289 (546)
.+.++.+..++-.+.+ +...+++|.||+--.+
T Consensus 4 ~~~~~~~~~~~~~ll~a~~~~~~~N~~~~~~~~ 36 (545)
T PRK11598 4 LLKRPSLNLLTFLLLAAFYITLCLNIAFYKQVL 36 (545)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445556666555444 6666778999865443
No 22
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=21.44 E-value=1.6e+02 Score=28.94 Aligned_cols=47 Identities=4% Similarity=0.093 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHhhcCccc
Q psy13316 239 TLFFPCIIAIVIWFWKRVHQLSRTPVLLEYMLLALGCALIFLNTPFE 285 (546)
Q Consensus 239 ~vf~~~s~i~~~~F~~~lr~l~~~~w~lEQk~~~Ll~~L~l~N~Pf~ 285 (546)
.++.+.+.+.+++.+.+-|+.+..+|.-=-..+++|.+-+++|||-+
T Consensus 27 ~~~~vat~~~~~~~~~~~~~v~~m~~is~~lv~vFGglTl~~~d~~F 73 (178)
T TIGR00997 27 IALLVATIIAIGLSYVKYKKVEKMQWISFVLIVVFGGLTLIFHDSRF 73 (178)
T ss_pred HHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 35677888888999999999999988865555557888999999943
No 23
>PRK10649 hypothetical protein; Provisional
Probab=21.08 E-value=6.2e+02 Score=29.14 Aligned_cols=15 Identities=13% Similarity=0.450 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy13316 300 ADIRQGVFYAALLSF 314 (546)
Q Consensus 300 ~~i~Q~~F~~~LL~F 314 (546)
.++||++.+++|.++
T Consensus 44 ~~~~~~~~~~~~~~~ 58 (577)
T PRK10649 44 NGFRDALLFSSLWLI 58 (577)
T ss_pred hHHHHHHHHHHHHHH
Confidence 678899888876433
No 24
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.50 E-value=1.9e+02 Score=22.25 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Q psy13316 391 AGVYFVFLCYMIWQVFGNISVKRQ 414 (546)
Q Consensus 391 ~~iY~l~L~~li~r~f~~i~~~r~ 414 (546)
..--|.|...+|++-.++|++||.
T Consensus 14 il~If~~iGl~IyQkikqIrgKkk 37 (49)
T PF11044_consen 14 ILGIFAWIGLSIYQKIKQIRGKKK 37 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334567888999999999999875
No 25
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=20.12 E-value=1.2e+03 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=14.2
Q ss_pred HHHHHhhcCccceeeeeccc
Q psy13316 274 GCALIFLNTPFELITLFYDF 293 (546)
Q Consensus 274 l~~L~l~N~Pf~~lt~~~~~ 293 (546)
...++++|.|++.-.+....
T Consensus 21 ~~~~l~~n~~~~~~~~~~~~ 40 (555)
T COG2194 21 WYFLLLLNFAFFLQVFLINS 40 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 56777889998776665543
Done!