Query psy13316
Match_columns 546
No_of_seqs 105 out of 122
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 16:24:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3if4_A Integron cassette prote 48.4 8.3 0.00028 33.3 2.1 26 89-117 63-88 (119)
2 4a2n_B Isoprenylcysteine carbo 22.6 3.5E+02 0.012 25.0 9.0 25 299-324 2-26 (194)
3 2k9j_B Integrin beta-3; transm 18.5 1.6E+02 0.0054 21.2 4.3 27 387-413 15-41 (43)
4 2z73_A Rhodopsin; visual pigme 17.3 7.4E+02 0.025 24.5 13.7 16 476-491 302-317 (448)
5 2l9u_A Receptor tyrosine-prote 15.7 2.4E+02 0.0082 19.7 4.4 30 377-406 4-33 (40)
6 2knc_B Integrin beta-3; transm 15.1 1.7E+02 0.0058 23.7 4.2 27 388-414 17-43 (79)
7 1xio_A Anabaena sensory rhodop 14.8 4.1E+02 0.014 25.9 7.8 96 384-500 128-224 (261)
8 2jo1_A Phospholemman; FXYD1, N 11.0 88 0.003 25.1 1.3 6 363-368 5-10 (72)
9 2jp3_A FXYD domain-containing 8.7 1.2E+02 0.0042 24.0 1.3 6 363-368 6-11 (67)
10 2l2t_A Receptor tyrosine-prote 8.1 4.2E+02 0.014 19.2 3.8 8 385-392 16-23 (44)
No 1
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=48.40 E-value=8.3 Score=33.26 Aligned_cols=26 Identities=23% Similarity=0.662 Sum_probs=21.0
Q ss_pred eEEEEecCCCCccccccCHhHHHHHhhee
Q psy13316 89 VFVFQIPLPRDNVILDYSRWQQNLIGVIQ 117 (546)
Q Consensus 89 vF~~~~P~p~~~~~~~~S~w~Q~L~~il~ 117 (546)
.=++++|.||+ =.|++|+|++++...
T Consensus 63 ~k~lhSP~PRE---Wsy~~W~~qI~~aA~ 88 (119)
T 3if4_A 63 TRSLHSPVPRE---WSYAQWLQQIFAAAS 88 (119)
T ss_dssp TTEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred cccccCCCCcc---ccHHHHHHHHHHHHH
Confidence 44679999984 589999999999754
No 2
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=22.62 E-value=3.5e+02 Score=25.05 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc
Q psy13316 299 LADIRQGVFYAALLSFWLVFAGEHLM 324 (546)
Q Consensus 299 l~~i~Q~~F~~~LL~FWLvf~~eh~~ 324 (546)
.+++++.+|..++..++++ =..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~i-r~~~~~ 26 (194)
T 4a2n_B 2 NENLWKICFIVMFIIWVFV-RKVYGT 26 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4889999998877665553 334433
No 3
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=18.54 E-value=1.6e+02 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13316 387 AMVSAGVYFVFLCYMIWQVFGNISVKR 413 (546)
Q Consensus 387 ~~i~~~iY~l~L~~li~r~f~~i~~~r 413 (546)
+.+.+++-+--++.++||.+..+..+|
T Consensus 15 gvi~~ivliGl~lLliwk~~~~i~Drr 41 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIWKLLITIHDRK 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHheehhh
Confidence 333445666778889999998886665
No 4
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=17.32 E-value=7.4e+02 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=11.1
Q ss_pred hhhhHhhHHHHHHHHH
Q psy13316 476 FFTGVYGMWNIYIFAL 491 (546)
Q Consensus 476 ~f~~~ygm~N~Yv~~L 491 (546)
.+..+.+.+|-.+|.+
T Consensus 302 ~l~~~ns~~NPiIY~~ 317 (448)
T 2z73_A 302 MFAKASAIHNPMIYSV 317 (448)
T ss_dssp HHHHHGGGSHHHHHHH
T ss_pred HHHHHHHhhcchHHHH
Confidence 4455677788888865
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=15.74 E-value=2.4e+02 Score=19.66 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=23.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13316 377 TNVALTFITVAMVSAGVYFVFLCYMIWQVF 406 (546)
Q Consensus 377 ~~~~~~f~i~~~i~~~iY~l~L~~li~r~f 406 (546)
+.++|+..+++|+.++...+=-.|+.||.-
T Consensus 4 thl~malt~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 4 THLTMALTVIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCceeEEEccc
Confidence 446788888888877777777778888875
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.12 E-value=1.7e+02 Score=23.67 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy13316 388 MVSAGVYFVFLCYMIWQVFGNISVKRQ 414 (546)
Q Consensus 388 ~i~~~iY~l~L~~li~r~f~~i~~~r~ 414 (546)
.+.+++-+.-++.++||.+..|..+|.
T Consensus 17 vi~gilliGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 17 VMGAILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555667788898888877754
No 7
>1xio_A Anabaena sensory rhodopsin; signaling protein, photoreceptor; HET: RET PEE; 2.00A {Nostoc SP} SCOP: f.13.1.1
Probab=14.79 E-value=4.1e+02 Score=25.90 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhhhccCccc
Q psy13316 384 ITVAMVSAGVYFVFLCYMIWQVFGNISVKRQALPSMSNVRRLHYEGIIYRFKFLMLVTLLCAAMTIIGFILGQASEGRWK 463 (546)
Q Consensus 384 ~i~~~i~~~iY~l~L~~li~r~f~~i~~~r~~l~~~s~~r~l~y~~ii~R~kfl~~~tli~~~ltv~~f~l~~v~~~~~~ 463 (546)
+...++.+++-++|++|.++...++- .+++ -.+.|+ -|+.+-.++++.=++==+.+.++. +|.
T Consensus 128 kw~~f~is~~~~l~Ily~l~~~~~~~-a~~~----~~~v~~--------~f~~l~~~v~v~W~iYPI~w~l~~--~g~-- 190 (261)
T 1xio_A 128 RYLWYICGVCAFLIILWGIWNPLRAK-TRTQ----SSELAN--------LYDKLVTYFTVLWIGYPIVWIIGP--SGF-- 190 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHH-HTTS----CHHHHH--------HHHHHHHHHHHHHHHHHHHHHHST--TTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcC----CHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhh--ccC--
Confidence 34555666677777887776654321 1111 012222 344444444433333223344442 221
Q ss_pred cCCCccccc-chhhhhhHhhHHHHHHHHHHhhccCCCC
Q psy13316 464 WDEDLHLDY-TSAFFTGVYGMWNIYIFALMVLYAPSHK 500 (546)
Q Consensus 464 ~~~~~~~~~-~Sa~f~~~ygm~N~Yv~~L~~lYsPS~k 500 (546)
| ..+. +.+.+-++-=++|-.+|.+..+++-..-
T Consensus 191 -~---~i~~~~e~i~y~ilDvlaK~~Fg~~l~~~~~~~ 224 (261)
T 1xio_A 191 -G---WINQTIDTFLFCLLPFFSKVGFSFLDLHGLRNL 224 (261)
T ss_dssp -C---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -C---ccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 1122 3445555666677788888888776533
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.98 E-value=88 Score=25.12 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=4.1
Q ss_pred ccCcce
Q psy13316 363 LVNPFY 368 (546)
Q Consensus 363 l~dP~y 368 (546)
=.||||
T Consensus 5 E~dPF~ 10 (72)
T 2jo1_A 5 EHDPFT 10 (72)
T ss_dssp HHSGGG
T ss_pred cCCCcc
Confidence 368984
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.68 E-value=1.2e+02 Score=24.02 Aligned_cols=6 Identities=50% Similarity=0.993 Sum_probs=3.8
Q ss_pred ccCcce
Q psy13316 363 LVNPFY 368 (546)
Q Consensus 363 l~dP~y 368 (546)
-.||||
T Consensus 6 e~dpF~ 11 (67)
T 2jp3_A 6 KGSPFY 11 (67)
T ss_dssp TTSGGG
T ss_pred cCCCcc
Confidence 358874
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.12 E-value=4.2e+02 Score=19.23 Aligned_cols=8 Identities=0% Similarity=-0.251 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy13316 385 TVAMVSAG 392 (546)
Q Consensus 385 i~~~i~~~ 392 (546)
+++++.++
T Consensus 16 VVgGv~~v 23 (44)
T 2l2t_A 16 VIGGLFIL 23 (44)
T ss_dssp HHHHHHHH
T ss_pred ehHHHHHH
Confidence 44444433
Done!