Query psy13316
Match_columns 546
No_of_seqs 105 out of 122
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 16:24:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13316.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13316hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjc1 f.32.1.1 (C:261-379) M 20.9 72 0.0052 25.8 5.6 15 385-399 89-103 (119)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 16.3 88 0.0064 20.3 4.0 27 391-417 8-34 (37)
3 d2obpa1 a.4.5.71 (A:12-92) Put 6.8 35 0.0026 26.0 -0.8 12 412-424 32-43 (81)
4 d1flja_ b.74.1.1 (A:) Carbonic 6.3 2.2E+02 0.016 25.1 4.5 51 183-236 76-132 (259)
5 d3cx5c1 f.32.1.1 (C:262-385) M 6.3 3.8E+02 0.028 21.1 5.7 36 348-399 68-103 (124)
6 d2e74f1 f.23.25.1 (F:1-32) Pet 6.1 1.8E+02 0.013 17.9 2.4 16 306-321 5-20 (32)
7 d1ppjd2 f.23.11.1 (D:196-241) 5.9 2.4E+02 0.018 18.9 3.4 22 235-256 9-30 (46)
8 d3cx5d2 f.23.11.1 (D:261-307) 4.7 3.5E+02 0.025 18.2 3.6 23 235-257 9-31 (47)
9 d1luga_ b.74.1.1 (A:) Carbonic 4.2 3.6E+02 0.026 23.5 4.5 49 183-234 76-130 (259)
10 d1uuja_ a.221.1.1 (A:) Lissenc 3.4 1.3E+02 0.0093 22.5 0.3 9 264-272 48-56 (76)
No 1
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.95 E-value=72 Score=25.78 Aligned_cols=15 Identities=20% Similarity=0.611 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy13316 385 TVAMVSAGVYFVFLC 399 (546)
Q Consensus 385 i~~~i~~~iY~l~L~ 399 (546)
.++-++.++||+|..
T Consensus 89 ~~gqi~tv~YF~~fl 103 (119)
T d1ppjc1 89 TIGQLASVLYFLLIL 103 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555667788887654
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.26 E-value=88 Score=20.35 Aligned_cols=27 Identities=15% Similarity=0.325 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCC
Q psy13316 391 AGVYFVFLCYMIWQVFGNISVKRQALP 417 (546)
Q Consensus 391 ~~iY~l~L~~li~r~f~~i~~~r~~l~ 417 (546)
.++|.+|+.|...-.+-+-..||.+.|
T Consensus 8 l~ly~Fw~FFagLi~YL~rE~~REGyP 34 (37)
T d1eysh2 8 ITIWAFWLFFFGLIIYLRREDKREGYP 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCC
Confidence 456777777777666766666776655
No 3
>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}
Probab=6.76 E-value=35 Score=26.00 Aligned_cols=12 Identities=67% Similarity=0.960 Sum_probs=6.0
Q ss_pred hhccCCCcccccc
Q psy13316 412 KRQALPSMSNVRR 424 (546)
Q Consensus 412 ~r~~l~~~s~~r~ 424 (546)
||+++| ||..||
T Consensus 32 Kra~~P-MS~LRR 43 (81)
T d2obpa1 32 KRAQLP-MSVLRR 43 (81)
T ss_dssp HHHTCC-HHHHHH
T ss_pred hhcCCc-HHHHHH
Confidence 444443 555554
No 4
>d1flja_ b.74.1.1 (A:) Carbonic anhydrase {Rat (Rattus norvegicus), isozyme III [TaxId: 10116]}
Probab=6.34 E-value=2.2e+02 Score=25.09 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=36.4
Q ss_pred eeeeeeccCCceEEEEEEec------CCCccccccccceeeeEEEEEEEeCCCeeeehhh
Q psy13316 183 PLFELGSLHHDYYLLNVRLP------VDNDLNMNTNLGQVEDMWLVAINQNGGFTKIWLS 236 (546)
Q Consensus 183 ~l~~lg~l~y~~YllnI~f~------~~~~~~~n~~~g~i~di~~~~i~~N~~FT~~ei~ 236 (546)
+.+.-|.+.+.|.+..++|. ...+-.+| |.-.++++...|+|+.|..+.-+
T Consensus 76 ~~~~gg~l~~~Y~l~q~hfHwG~~~~~gSEH~id---G~~~~~E~h~VH~n~~~~~~~~a 132 (259)
T d1flja_ 76 SMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVD---GVKYAAELHLVHWNPKYNTFGEA 132 (259)
T ss_dssp SEEEETTCSSCEEEEEEEEEECSSTTCCCSSEET---TBCCSEEEEEEEECGGGSSHHHH
T ss_pred eEEecCccccceeeEEEEEEeCCCCCCCcceeEC---CEecCCceEEEEecCCCCCHHHH
Confidence 45677888899999999997 33333344 34457788888999988876544
No 5
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.31 E-value=3.8e+02 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcccccCcceeeeecccCccchhhHHHHHHHHHHHHHHHHH
Q psy13316 348 CLSLFIFDLCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVSAGVYFVFLC 399 (546)
Q Consensus 348 ~l~l~i~~~~~r~~ql~dP~ys~~~~~~~~~~~~~f~i~~~i~~~iY~l~L~ 399 (546)
+++-++.-.|.-+...++|+ +.++-++..+||.|.+
T Consensus 68 fv~~fi~LtwlG~~p~e~p~----------------~~~gqi~s~~YF~~Fl 103 (124)
T d3cx5c1 68 FVFNFVLLGQIGACHVEVPY----------------VLMGQIATFIYFAYFL 103 (124)
T ss_dssp HHHHHHHHHHHHTSCSCTTH----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCchH----------------HHHHHHHHHHHHHHHH
Confidence 34444555665555455554 2444556677887764
No 6
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.09 E-value=1.8e+02 Score=17.87 Aligned_cols=16 Identities=63% Similarity=0.955 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhh
Q psy13316 306 VFYAALLSFWLVFAGE 321 (546)
Q Consensus 306 ~F~~~LL~FWLvf~~e 321 (546)
+-++++|+|=|||.+-
T Consensus 5 il~aa~lsfglifvgw 20 (32)
T d2e74f1 5 MLYAALLSFGLIFVGW 20 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHh
Confidence 4567888888888653
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.91 E-value=2.4e+02 Score=18.85 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q psy13316 235 LSLKTLFFPCIIAIVIWFWKRV 256 (546)
Q Consensus 235 i~~r~vf~~~s~i~~~~F~~~l 256 (546)
+++|.+++.+.+.++.+|..|-
T Consensus 9 mG~Kv~~~l~~l~~l~yy~KR~ 30 (46)
T d1ppjd2 9 MGLKMLLMMGLLLPLVYAMKRH 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887764
No 8
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.70 E-value=3.5e+02 Score=18.21 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q psy13316 235 LSLKTLFFPCIIAIVIWFWKRVH 257 (546)
Q Consensus 235 i~~r~vf~~~s~i~~~~F~~~lr 257 (546)
+++|.+++..+++++..|.+|.+
T Consensus 9 mg~K~~~i~s~l~~~~~y~KR~k 31 (47)
T d3cx5d2 9 LGLKTVIILSSLYLLSIWVKKFK 31 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888888888888888888763
No 9
>d1luga_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), erythrocytes, isozyme II [TaxId: 9606]}
Probab=4.25 E-value=3.6e+02 Score=23.50 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=34.9
Q ss_pred eeeeeeccCCceEEEEEEec------CCCccccccccceeeeEEEEEEEeCCCeeeeh
Q psy13316 183 PLFELGSLHHDYYLLNVRLP------VDNDLNMNTNLGQVEDMWLVAINQNGGFTKIW 234 (546)
Q Consensus 183 ~l~~lg~l~y~~YllnI~f~------~~~~~~~n~~~g~i~di~~~~i~~N~~FT~~e 234 (546)
+...-|.++..|.+..++|. ...+-.+|. +--++++...|+|.++..+.
T Consensus 76 ~~i~~~~~~~~Y~~~q~hfHwG~~~~~pSEH~idG---~~~~~E~hivH~~~~~~~~~ 130 (259)
T d1luga_ 76 AVLKGGPLDGTYRLIQFHFHWGSLDGQGSEHTVDK---KKYAAELHLVHWNTKYGDFG 130 (259)
T ss_dssp SEEEEETCSSCEEEEEEEEEECSSTTCCCSSEETT---BCCSEEEEEEEEEGGGSSHH
T ss_pred eEEeCCCccceeEEEEEEEEeCCCCCCCcceEECC---eecCCceEEEEEecCCCCHH
Confidence 45566788889999999998 434333443 44577888888898887764
No 10
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.43 E-value=1.3e+02 Score=22.53 Aligned_cols=9 Identities=33% Similarity=0.147 Sum_probs=7.4
Q ss_pred hhHHHHHHH
Q psy13316 264 VLLEYMLLA 272 (546)
Q Consensus 264 w~lEQk~~~ 272 (546)
-++|+||++
T Consensus 48 glLEKKWtS 56 (76)
T d1uuja_ 48 GLLEKKWTS 56 (76)
T ss_dssp THHHHHHTC
T ss_pred CcchhHHHH
Confidence 479999976
Done!