RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13316
(546 letters)
>gnl|CDD|219127 pfam06664, MIG-14_Wnt-bd, Wnt-binding factor required for Wnt
secretion. MIG-14 is a Wnt-binding factor. Newly
synthesised EGL-20/Wnt binds to MIG-14 in the Golgi,
targetting the Wnt to the cell membrane for secretion.
AP-2-mediated endocytosis and retromer retrieval at the
sorting endosome would recycle MIG-14 to the Golgi,
where it can bind to EGL-20/Wnt for next cycle of
secretion.
Length = 291
Score = 274 bits (702), Expect = 2e-88
Identities = 124/325 (38%), Positives = 169/325 (52%), Gaps = 35/325 (10%)
Query: 177 YNCSIIPLFELGSLHHDYYLLNVRLPVDNDLNMNTNLGQVEDMWLVAINQNGGFTKIWLS 236
Y C I LFELGSL + YYL+N+ DN + + D+ I+QN GFT+ L
Sbjct: 1 YKCDEITLFELGSLDYPYYLVNISFDSDNQYTIVS------DITFTVIHQNPGFTQFELW 54
Query: 237 LKTLFFPCIIAIVIWFWKRVHQLSRTPVLLE-YMLLALGCALIFLNTPFELITLFYDFPF 295
+T+F + + WF R+ QLSR P L+E +AL LI N PF +TL PF
Sbjct: 55 FRTIFVIFSVIFLCWFLHRLRQLSRKPWLIEQKWTVALLPLLILYNNPFYPLTLLMPSPF 114
Query: 296 MILLADIRQGVFYAALLSFWLVFAGEHLMIQDNEQRNQLRTYWKHLSGVFTGCLSLFIFD 355
M+LL DIRQG+FY LL FWLVF E + +R L+ Y L V L+L + D
Sbjct: 115 MLLLDDIRQGIFYCYLLLFWLVFYDELRLEN---ERKNLKFYLPKLIVVGIIWLALLVLD 171
Query: 356 LCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVSAGVYFVFLCYMIWQVFGNISVKRQA 415
+ ERG QL +P YS W G+ A+ FI + + A Y ++L ++I +VF + +R +
Sbjct: 172 IWERGNQLKDPTYSYWTDVGGSQAAMVFILIVGICA--YLLYLIFLIIKVFSELRTRRYS 229
Query: 416 LPSMSNVRRLHYEGIIYRFKFLMLVTLLCAAMTIIGFILGQASEGRWKWDEDLHLDYTSA 475
YR+KFLML TLLCAA+T+ +SA
Sbjct: 230 F---------------YRYKFLMLFTLLCAAITVAL--------LGNFSSSFSTYYSSSA 266
Query: 476 FFTGVYGMWNIYIFALMVLYAPSHK 500
FF G YG+ NIY++ L LY+PSHK
Sbjct: 267 FFLGFYGLLNIYVYTLAYLYSPSHK 291
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 31.0 bits (71), Expect = 1.9
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 37/132 (28%)
Query: 223 AINQNGGFTKIWLSLK---TLFFPCIIAIVIWFWKR-------------VHQLSR----- 261
++ F+ +W L LF P ++ + W++ + L R
Sbjct: 482 SLKITVSFSNLWDGLFIALLLFLPLLLIAGLIRWRKKWIKARLQKLAADIGTLKRDSQLH 541
Query: 262 TPV-LLEYMLLALGCALIFLNTPFELITLFYDFPFMILLADIRQ-GVFYAALLS---FWL 316
TP +L +LLAL LIFL + ++L Q + ++ L FWL
Sbjct: 542 TPKAILITLLLALPVTLIFL-------AVGL----ILLTDAFNQSELLWSWSLKLALFWL 590
Query: 317 VFAGEHLMIQDN 328
VFA + +++ N
Sbjct: 591 VFATCYRVLRPN 602
>gnl|CDD|218648 pfam05592, Bac_rhamnosid, Bacterial alpha-L-rhamnosidase. This
family consists of bacterial rhamnosidase A and B
enzymes. L-Rhamnose is abundant in biomass as a common
constituent of glycolipids and glycosides, such as plant
pigments, pectic polysaccharides, gums or
biosurfactants. Some rhamnosides are important bioactive
compounds. For example, terpenyl glycosides, the
glycosidic precursor of aromatic terpenoids, act as
important flavouring substances in grapes. Other
rhamnosides act as cytotoxic rhamnosylated terpenoids,
as signal substances in plants or play a role in the
antigenicity of pathogenic bacteria.
Length = 509
Score = 30.7 bits (70), Expect = 2.4
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 342 SGVFTGCLSLFIFDLCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVSAGVYFVFLCYM 401
S + L DL Q N V ++ + V + ++
Sbjct: 168 SAFYAKWLR----DL--ADEQRENGAVPDVVPSVWGPG-----SPGPEWGDAI-VIVPWV 215
Query: 402 IWQVFGNISVKRQALPSM 419
+++ +G+ + + PSM
Sbjct: 216 LYRNYGDERILKDQYPSM 233
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 30.0 bits (68), Expect = 4.3
Identities = 22/180 (12%), Positives = 46/180 (25%), Gaps = 51/180 (28%)
Query: 267 EYMLLALGCALIFLNTPFE-----LITLFYDFPFMILLA--------------DIRQGVF 307
E + L + P I L D + L +G+F
Sbjct: 715 EVLTLLIYSLFNLFFLPLTPLQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLF 774
Query: 308 YAALLSFWLVFAGEHLMI--------------QDNEQRN----QLRTYWKHLSGVFTGCL 349
+ +++ G I + + L+T L
Sbjct: 775 NRKIFWRFILIIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTA-----FTVLVL 829
Query: 350 S--LFIFDLCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVSAGVYFVFLCYMIWQVFG 407
L + RG + + +N L + ++ + +FL + ++F
Sbjct: 830 IQLLLTLAVRSRG-------RPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQ 882
>gnl|CDD|215423 PLN02789, PLN02789, farnesyltranstransferase.
Length = 320
Score = 29.3 bits (66), Expect = 5.5
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 24 CQVACFLIGGFVAPNPSSADNVLATKCLDPGNNSEAWFYVRG 65
L+GG A S + +P N S W Y+RG
Sbjct: 185 VITRSPLLGGLEAMRDSELKYTIDAILANPRNES-PWRYLRG 225
>gnl|CDD|237900 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease;
Provisional.
Length = 356
Score = 28.7 bits (65), Expect = 8.0
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 379 VALTFI-----TVAM---VSAGVYFVFLCYMIWQVFGNIS 410
+AL+FI +V M V G+ F F+ Y+ ++FG +S
Sbjct: 287 MALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLS 326
>gnl|CDD|237570 PRK13959, PRK13959, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 341
Score = 28.5 bits (64), Expect = 9.9
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 88 IVFVFQIP-LPRDNVILDYSRWQ----QNLIGVIQLEVAYHSEAEMALSTVLTLDA-KIA 141
V + Q+P LP + DY + +N +I LEV + + + S + KI
Sbjct: 91 AVKLTQVPDLPFEGGSYDYDAYHEAAGENY--LIPLEVIFRNYVPVGSSLRDRIKEGKIK 148
Query: 142 YRNEGDPEDDWKYYASSLEERIVECS 167
+ G D+W L E IVE S
Sbjct: 149 PEDLGLDADEWPEEGVKLPEPIVEFS 174
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.447
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,675,168
Number of extensions: 2884540
Number of successful extensions: 3506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3489
Number of HSP's successfully gapped: 96
Length of query: 546
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 444
Effective length of database: 6,413,494
Effective search space: 2847591336
Effective search space used: 2847591336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)