RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13316
(546 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 1e-09
Identities = 60/382 (15%), Positives = 116/382 (30%), Gaps = 98/382 (25%)
Query: 70 HRIDDYLDEEHRLNYANKIVFVFQIPLPRD---NVILDYSRWQQNLIGVIQLEVAYH--- 123
H D+ EH+ Y I+ VF+ + + D + ++ E H
Sbjct: 4 HHHMDFETGEHQYQY-KDILSVFEDAFVDNFDCKDVQDMPK------SILSKEEIDHIIM 56
Query: 124 -----SEAEMALSTVLTLDAKIAYRNEGDP-EDDWKYYASSLEERIVECSMEVKKEGDHY 177
S T+L+ ++ + + ++K+ S ++ + SM + Y
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM----Y 112
Query: 178 NCSIIPLFELGSLHHDYYLLNV-RLPVDNDLNMNTNLGQVEDMWLVAINQNGGFTKIWLS 236
L+ + Y NV RL L L ++ V I+ G K W++
Sbjct: 113 IEQRDRLYNDNQVFAKY---NVSRLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 237 LKTL-------FFPCIIAIVIWFWKRVHQLSRTPVLLEYMLLALGCALIFLNTPFELITL 289
L I FW + + +LE ML L I N
Sbjct: 168 LDVCLSYKVQCKMDFKI-----FWLNLKNCNSPETVLE-MLQKL-LYQIDPN-------- 212
Query: 290 FYDFPFMILLADIRQGVFYAALLSFWLVFAGEHLMIQDNEQRNQLRTYWKHLSGVFTGCL 349
+ + ++ ++ + + +LR K + CL
Sbjct: 213 ------------------WTSRSDH-----SSNIKLRIHSIQAELRRLLKSKP--YENCL 247
Query: 350 SLFIFDLCERGTQLVNPFYSIWVTNIGTNVALT----FITVAMVSAGVYFVFLCYMIW-- 403
L + ++ + N F N+ + LT +T + +A + L +
Sbjct: 248 -LVLLNVQNA--KAWNAF------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 404 ------QVFGN-ISVKRQALPS 418
+ + + Q LP
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPR 320
Score = 49.9 bits (118), Expect = 2e-06
Identities = 70/473 (14%), Positives = 124/473 (26%), Gaps = 165/473 (34%)
Query: 1 MPGVIIENLSGKKLSVLIAGLVVCQ----VACFLIGGF---VAPNPSSADNVLA---TKC 50
+ G SGK + + VC F + N +S + VL
Sbjct: 158 VLG------SGK--TWVAL--DVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLL 206
Query: 51 --LDPGNNSEAWFYVRGKGSCHRIDDYLDEEHRL----NYAN-----------KIVFVFQ 93
+DP S + K RI E RL Y N K F
Sbjct: 207 YQIDPNWTSRSDHSSNIK---LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 94 IP-----LPRDNVILDY--SRWQQNLIGVIQLEVAYHSEAEMALSTVLTLDAK------- 139
+ R + D+ + ++ E + L L +
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 140 ---------IA--YRNEGDPEDDWKYYASSLEERIVECSMEVKKEGD---HY-NCSI--- 181
IA R+ D+WK+ I+E S+ V + + + S+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 182 ---IPLFELG----------------SLH----------------HDYYLLNVRLPVDND 206
IP L LH YL +++ ++N+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLENE 442
Query: 207 LNMNTNLGQVEDMWLVAINQNGGFTKIWLSLKTLFFPCIIAIVIWFWKRVHQLSRTPVLL 266
++ ++ V+ + + +L ++ H L
Sbjct: 443 YALHRSI--VDHYNIPKTFDSDDLIPPYLD------------QYFYSHIGHHLKNIEHPE 488
Query: 267 EYMLLALGCALIFLNTPFELITLFYDFPFMILLADIRQGVFYAALLSFWLVFAGEHLMIQ 326
L F +F DF F + Q + + + W +Q
Sbjct: 489 RMTL-------------FR--MVFLDFRF------LEQKIRHDSTA--WNASGSILNTLQ 525
Query: 327 DNEQRNQLRTYWKHLSGVFTGCLSLFIFDLCERGTQLVNPFYSIWVTNIGTNV 379
L+ Y + I D + +LVN ++ I N+
Sbjct: 526 Q------LKFYKPY------------ICDNDPKYERLVNA-ILDFLPKIEENL 559
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 5e-04
Identities = 74/453 (16%), Positives = 118/453 (26%), Gaps = 173/453 (38%)
Query: 27 ACFLIGGFVAPNPSSADNVLATKCLDPGNNSEAWFYVR--GKGSCHRIDDYLDEEHRL-- 82
A + +SA L A G+G+ DDY +E L
Sbjct: 129 ARIMAKRPFDKKSNSA---L----FRAVGEGNAQLVAIFGGQGN---TDDYFEELRDLYQ 178
Query: 83 NYANKIVFVFQI------PLPRDNV--------ILDYSRWQQN----------------- 111
Y + + + L R + L+ W +N
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 112 -LIGVIQLEVAY----------HSEAEMALSTVLTLDAK------IAYRNEGDPEDDWKY 154
LIGVIQL Y E L IA D W+
Sbjct: 239 PLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA------ETDSWE- 290
Query: 155 YASSLEERIVECSMEVKKEGDHYNCSIIPLFELGSLHHDYY------LLNVRLPVDNDLN 208
S + + + V LF +G ++ Y + ++N+
Sbjct: 291 ---SFFVSVRKA-ITV-------------LFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 209 ----M----NTNLGQVEDMWLVAINQNGGFTK-IWLSL-------------KTLFFPCII 246
M N QV+D + N + K + +SL ++L+
Sbjct: 334 VPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY----- 387
Query: 247 AIVIWFWK----------RVHQLSRTPVLLEYMLLALGCALIFLNTPFELITLFYDFPF- 295
+ + K R+ R + FL P + PF
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKF----------SNRFL--P---VAS----PFH 428
Query: 296 MILLADIRQGVFYAALLSFWLVFAGEHLMIQ--DNEQRNQLRTYWKHLSGVFTGCLSLFI 353
LL + L+ + F + + I D + LR +G +S I
Sbjct: 429 SHLLVPASDLIN-KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL--------SGSISERI 479
Query: 354 FD-LCERGTQLVNPFYSIW--VTNIGTNVALTF 383
D + V W T L F
Sbjct: 480 VDCII---RLPVK-----WETTTQFKATHILDF 504
Score = 41.6 bits (97), Expect = 7e-04
Identities = 45/237 (18%), Positives = 74/237 (31%), Gaps = 86/237 (36%)
Query: 2 PGVIIENLSGKKLSVLIAGLVVCQV-------------------ACFLIG-----GFVAP 37
PG + L G + GLV F IG + P
Sbjct: 260 PGELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY--P 315
Query: 38 NPSSADNVLATKCLDPGNNSEAW-FYVRGKGSCHRIDDYLDE-EHRLNYANKIVFVFQIP 95
N S ++L L+ + + + DY+++ L ++ +I
Sbjct: 316 NTSLPPSILE-DSLENNEGVPSPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQV----EIS 369
Query: 96 L---PRDNVI----------------------LDYSRW---QQNLIGVIQ-LEVA--YHS 124
L ++ V+ LD SR ++ L + L VA +HS
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 125 ----EAEMALSTVLTL--------DAKIA-YRNEGDPED--DWKYYASSLEERIVEC 166
A ++ L D +I Y D D D + + S+ ERIV+C
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDGSDLRVLSGSISERIVDC 482
Score = 38.1 bits (88), Expect = 0.008
Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 94/282 (33%)
Query: 277 LIF-----LNTPF-ELITLFYDFPFMILLADIRQGVFYAALLSFWLVFAGEHLMIQDNEQ 330
IF + F EL L+ Y L+ + F+ E L
Sbjct: 158 AIFGGQGNTDDYFEELRDLY----------QT-----YHVLVGDLIKFSAETL------- 195
Query: 331 RNQLRTYWKHLSGVFTGCLSLFIFDLCERGTQLVNPFYSIWVTNIGTNVALTFITVAMVS 390
L +F +G ++ W+ N ++ +S
Sbjct: 196 --------SELIRTTLDAEKVF-----TQGLNILE-----WLENPSNTPDKDYLLSIPIS 237
Query: 391 AGVYFV--FLCYMIW-QVFG-NISVKRQALPSMSNVRRLHYEGIIYRFKFLMLVTLLCAA 446
+ V Y++ ++ G R L + H +G++ A
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLV-------------TA 280
Query: 447 MTIIGFILGQASEGRWK-WDEDLHLDYTSAFFTGV-----YGMWNIYIFALMVLYAPSHK 500
+ I A W+ + + T FF GV Y N + ++ + +
Sbjct: 281 VAI-------AETDSWESFFVSVRKAITVLFFIGVRCYEAYP--NTSLPPSILEDSLENN 331
Query: 501 Q-WPSEM----DINIATTEEIEFSPLSHSNMHDGANE---IS 534
+ PS M ++ ++ ++ +N H A + IS
Sbjct: 332 EGVPSPMLSISNLTQEQVQDY----VNKTNSHLPAGKQVEIS 369
Score = 28.9 bits (64), Expect = 5.4
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 24/86 (27%)
Query: 463 KWDEDLHLDYTSAFFTGVYGMWNIYIFALMVLYAPSHKQWPSEMDINIATTEEIE---FS 519
K ++++ TS F G +L A Q P+ + A E+++
Sbjct: 1705 KIFKEINEHSTSYTFRSEKG----------LLSATQFTQ-PALTLMEKAAFEDLKSKGLI 1753
Query: 520 PLS-----HSNMHDGANEISALTSFA 540
P HS G E +AL S A
Sbjct: 1754 PADATFAGHSL---G--EYAALASLA 1774
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.044
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 494 LYAPSHKQWPSEMDINIATTE 514
LYA P+ + I AT E
Sbjct: 31 LYADDSA--PA-LAIK-ATME 47
>1zup_A Hypothetical protein TM1739; putative nuclease, structural
genomics, joint center for STR genomics, JCSG, protein
structure initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.55.3.11
Length = 315
Score = 32.9 bits (74), Expect = 0.24
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 59 AWFYVR-----GKGSCHRIDDYLDEEHRLNYANKIVFVFQIPLPRDNVILDYSRWQQNLI 113
YV+ G R++ Y+ +++++ Y K+ LP L R +N++
Sbjct: 228 GA-YVKLIDGEGIRGLVRLETYVKDDNQIPYIRKVFDDLAKTLPHLTADLPIPRLPENIL 286
Query: 114 GVIQLE 119
+ LE
Sbjct: 287 PIQFLE 292
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.447
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,686,454
Number of extensions: 528609
Number of successful extensions: 1007
Number of sequences better than 10.0: 1
Number of HSP's gapped: 997
Number of HSP's successfully gapped: 20
Length of query: 546
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 448
Effective length of database: 3,965,535
Effective search space: 1776559680
Effective search space used: 1776559680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.1 bits)