RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13316
         (546 letters)



>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 301

 Score = 32.5 bits (74), Expect = 0.095
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 71  RIDDYLDEEHRLNYANKIVFVFQIPLPRDNVILDYSRWQQNLIGVIQLE 119
           R++ Y+ +++++ Y  K+       LP     L   R  +N++ +  LE
Sbjct: 232 RLETYVKDDNQIPYIRKVFDDLAKTLPHLTADLPIPRLPENILPIQFLE 280


>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
           43554 [TaxId: 232]}
          Length = 464

 Score = 28.8 bits (64), Expect = 1.9
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 199 VRLPVDNDLNMNTNLGQVEDMWLVAINQNGGFTKIWLS 236
           +R+  DN L  N   G + +++   I  + G   +   
Sbjct: 215 LRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFG 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,144,384
Number of extensions: 103204
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 10
Length of query: 546
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 456
Effective length of database: 1,171,896
Effective search space: 534384576
Effective search space used: 534384576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.4 bits)