BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13318
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 61/88 (69%), Gaps = 9/88 (10%)
Query: 15 SVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-L 73
++N+ +S ++ + E+SKTNLIVNYLPQ MTQEE+KSLF S+GE+ESCKL+RDK TG+ L
Sbjct: 49 TINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 108
Query: 74 SVVANSIFAPE--------LNGLHSQTE 93
+ P+ LNGL QT+
Sbjct: 109 GYGFVNYIDPKDAEKAINTLNGLRLQTK 136
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 191
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 17 NSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSV 75
N+ +S + + E+SKTNLIVNYLPQ MTQEE+KSLF S+GE+ESCKL+RDK TG+ L
Sbjct: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
Query: 76 VANSIFAPE--------LNGLHSQTE 93
+ P+ LNGL QT+
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTK 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 17 NSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSV 75
N+ +S + + E+SKTNLIVNYLPQ MTQEE+KSLF S+GE+ESCKL+RDK TG+ L
Sbjct: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
Query: 76 VANSIFAPE--------LNGLHSQTE 93
+ P+ LNGL QT+
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTK 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%), Gaps = 9/86 (10%)
Query: 17 NSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSV 75
N+ +S + + E+SKTNLIVNYLPQ MTQEE+KSLF S+GE+ESCKL+RDK TG+ L
Sbjct: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
Query: 76 VANSIFAPE--------LNGLHSQTE 93
+ P+ LNGL QT+
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTK 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 5/65 (7%)
Query: 8 NGSLHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD 67
NG +N N A+ ++SKTNLIVNYLPQ MTQEE KSLF S+GE+ESCKL+RD
Sbjct: 15 NGPGSVGILNGTNGAA-----DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRD 69
Query: 68 KTTGE 72
K TG+
Sbjct: 70 KITGQ 74
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELS 74
NL V+ LP+TM Q+EM+ LFS G + + +++ D+ TG +S
Sbjct: 122 NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVS 162
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 46/56 (82%), Gaps = 2/56 (3%)
Query: 17 NSHNSASQTPSN--EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
N+ N +S SN E+SKTNLIVNYLPQ MTQEE+KSLF S+GE+ESCKL+RDK T
Sbjct: 48 NTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 103
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 191
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
++SKTNLIVNYLPQ MTQEE KSLF S+GE+ESCKL+RDK TG+
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQ 73
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TM Q+EM+ LFS G + + +++ D+ TG
Sbjct: 121 NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTG 158
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 9/76 (11%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSVVANSIFAPE- 84
+ ++SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG+ L + P+
Sbjct: 45 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 104
Query: 85 -------LNGLHSQTE 93
LNGL QT+
Sbjct: 105 AEKAINTLNGLRLQTK 120
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 175
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 9/76 (11%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSVVANSIFAPE- 84
+ ++SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG+ L + P+
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 85 -------LNGLHSQTE 93
LNGL QT+
Sbjct: 93 AEKAINTLNGLRLQTK 108
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 52/76 (68%), Gaps = 9/76 (11%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSVVANSIFAPE- 84
+ ++SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG+ L + P+
Sbjct: 40 TTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 99
Query: 85 -------LNGLHSQTE 93
LNGL QT+
Sbjct: 100 AEKAINTLNGLRLQTK 115
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 170
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 10/90 (11%)
Query: 14 SSVNSHNSASQTPSN-EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
++VN++ S+ N E+SKTNLI NYLPQ MTQEE+KSLF S+GE+ESCKL+RDK TG+
Sbjct: 19 TTVNNNCSSPVDSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQ 78
Query: 73 -LSVVANSIFAPE--------LNGLHSQTE 93
L + P+ LNGL QT+
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTK 108
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 163
>sp|Q7SZT7|ELAV4_XENLA ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1
Length = 400
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 15 SVNSHNSAS--QT-PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
S NS N S QT + ++SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG
Sbjct: 30 SSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 167 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 204
>sp|A4QNI8|ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1
Length = 400
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
Query: 15 SVNSHNSAS--QT-PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
S NS N S QT + ++SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG
Sbjct: 30 SSNSRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG 89
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TMTQ+E++ LFS G + + +++ D+ TG
Sbjct: 167 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG 204
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
+ ++SKTNLIVNYLPQ MTQ+E KSLF S+G++ESCKL+RDK TG+
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQ 78
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TM+Q+EM+ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATG 163
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 41/46 (89%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
+ ++SKTNLIVNYLPQ MTQ+E KSLF S+G++ESCKL+RDK TG+
Sbjct: 33 ATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQ 78
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
NL V+ LP+TM+Q+EM+ LFS G + + +++ D+ TG
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTG 163
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 6/65 (9%)
Query: 5 PQQNGSLHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKL 64
P NG+ + S N N ++ E++TNLIVNYLPQTMT++E++SLFSSVGE+ES KL
Sbjct: 127 PNTNGNAGSGSQNGSNGST------ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKL 180
Query: 65 IRDKT 69
IRDK+
Sbjct: 181 IRDKS 185
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD 67
PS++ K NL V+ LP+TMTQ+E++++F+ G + + +++++
Sbjct: 240 PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQN 282
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
Query: 17 NSHNSASQTPSN--EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKT 69
N ++ +Q SN E++TNLIVNYLPQTMT++E++SLFSSVGE+ES KLIRDK+
Sbjct: 167 NGNSGGAQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKS 221
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD 67
PS++ K NL V+ LP+TMTQ+E++++F+ G + + +++++
Sbjct: 276 PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQN 318
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
++ +TNLIVNYLPQ MTQEE++SLFSS+GEVES KLIRDK G
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAG 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS+E K NL ++ LP+TMTQ++++ +FS G + + +++ D+TTG
Sbjct: 98 PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
++ +TNLIVNYLPQ MTQ+E++SLFSS+GEVES KLIRDK G
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS+E K NL ++ LP+TMTQ++++ +F G + + +++ D+ TG
Sbjct: 98 PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATG 144
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
++ +TNLIVNYLPQ MTQ+E++SLFSS+GEVES KLIRDK G
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS+E K NL ++ LP+TMTQ++++ +F G + + +++ D+ TG
Sbjct: 109 PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATG 155
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 38/44 (86%)
Query: 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
++ +TNLIVNYLPQ MTQ+E++SLFSS+GEVES KLIRDK G
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS+E K NL ++ LP+TMTQ++++ +F G + + +++ D+ TG
Sbjct: 98 PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATG 144
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+TNLIVNYLPQ MTQ+E++SLFSS+GEVES KLIRDK G
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS+E K NL ++ LP+TMTQ++++ +FS G + + +++ D+TTG
Sbjct: 98 PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTG 144
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPE-------- 84
TNLIVNYLPQ MT E+ +LF ++G + +C+++RD TG A FA E
Sbjct: 110 TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIK 169
Query: 85 -LNGLHSQTER 94
LNG+ + +R
Sbjct: 170 SLNGITVRNKR 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E K TNL V LP+T+T +++ ++F G + ++RDK TG+ VA
Sbjct: 188 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVA 240
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPELN 86
S TNLIVNYLPQ MT E+ +LF ++G + +C+++RD TG A F E++
Sbjct: 125 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E K TNL V LP+T+T +++ ++F G + ++RDK TG VA
Sbjct: 205 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVA 257
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPELN 86
S TNLIVNYLPQ MT E+ +LF ++G + +C+++RD TG A F E++
Sbjct: 123 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E K TNL V LP+T+T +++ ++F G + ++RDK TG VA
Sbjct: 203 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVA 255
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 9 GSLHN--SSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66
GS+ N +S NS NS + S TNLIVNYLPQ M E+ SLF ++G + +C+++R
Sbjct: 57 GSVGNMANSTNSLNSGT-----NNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMR 111
Query: 67 DKTTGELSVVANSIFAPELNGLHS 90
D TG F E + L +
Sbjct: 112 DYKTGYSYGYGFVDFGSEADALRA 135
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E+ + TNL V L +++T E+++++F G++ ++RDK TG VA
Sbjct: 156 PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVA 208
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 15 SVNSHNSASQTPSNEES--KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
S NS NS + + TNLIVNYLPQ MT E+ +LF + G + +C++++D TG
Sbjct: 65 STNSVNSGGGDCGDNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGY 124
Query: 73 LSVVANSIFAPELN 86
A FA E++
Sbjct: 125 SFGYAFVDFASEID 138
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E K TNL V LP+T+T +E++ +F G + ++RDK TG+ VA
Sbjct: 163 PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVA 215
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 15 SVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELS 74
S+NS + + TNLIVNYLPQ MT E+ +LF + G + +C++++D TG
Sbjct: 84 SLNSGGDGGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSF 143
Query: 75 VVANSIFAPELN 86
A FA E++
Sbjct: 144 GYAFVDFASEID 155
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77
P E K TNL V LP+T+T +E++ +F G + ++RDK TG VA
Sbjct: 180 PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVA 232
>sp|Q8IUH3|RBM45_HUMAN RNA-binding protein 45 OS=Homo sapiens GN=RBM45 PE=2 SV=1
Length = 476
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 18 SHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
S +S S +E T + V +P++ T+E+++ F G++E C +I++K TGE
Sbjct: 106 SRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGE 159
>sp|Q8BHN5|RBM45_MOUSE RNA-binding protein 45 OS=Mus musculus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 18 SHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
S +S S +E T + V +P++ T+E+++ F G++E C +I++K TGE
Sbjct: 106 SRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSIIKNKVTGE 159
>sp|Q8CFD1|RBM45_RAT RNA-binding protein 45 OS=Rattus norvegicus GN=Rbm45 PE=2 SV=1
Length = 476
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 18 SHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
S +S S +E T + V +P++ T+E+++ F G++E C +I++K TGE
Sbjct: 106 SRSSGSHRDVEDEELTRIFV-MIPKSYTEEDLREKFKVYGDIEYCSVIKNKVTGE 159
>sp|O04425|FCA_ARATH Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA
PE=1 SV=2
Length = 747
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 9 GSLHNSSVNSHNSASQTPSNEESKT-NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD 67
G ++ H S + T ++ S T L V +P+T T+EE++ F G V LI+D
Sbjct: 95 GQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKD 154
Query: 68 KTTGE 72
K TG+
Sbjct: 155 KRTGQ 159
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 22 ASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
A + P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGK 55
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 55
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 21 SASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
S +Q S+ E + + L Q M + + S FS GEV S K+IR+K TG+
Sbjct: 72 SPTQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQ 123
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 9 GSLHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
G ++ +H S S + S T + V L +T EE++ F+ GEV S K+ K
Sbjct: 274 GGYASNGAATHGSQS---DGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK 330
Query: 69 TTG 71
G
Sbjct: 331 GCG 333
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
L V L + TQE ++S FS GEV C +++DKTT
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT 47
>sp|Q4KMD3|U1SBP_DANRE U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Danio
rerio GN=snrnp35 PE=2 SV=1
Length = 208
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 5 PQQNGSLHNSSVNSHNSASQTPSNEESKTN----------LIVNYL-PQTMTQEEMKSLF 53
P + GS+ + V H++ K N L V L PQT T+E+++ +F
Sbjct: 12 PLKAGSIDGTDVEPHDAGVWRAMLARYKPNRGVCGDPDLTLFVARLNPQT-TEEKLRDVF 70
Query: 54 SSVGEVESCKLIRDKTTG 71
S G++ +L+RD TG
Sbjct: 71 SKFGDIRRLRLVRDVVTG 88
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 22 ASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
A + P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 5 AVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGK 55
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
Q ++ +++KS+F + G+++SC L RD TTG+
Sbjct: 206 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGK 236
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
Q ++ +++KS+F + G+++SC L RD TTG+
Sbjct: 235 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGK 265
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
Q ++ +++KS+F + G+++SC L RD TTG+
Sbjct: 240 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGK 270
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
Q ++ +++KS+F + G+++SC L RD TTG+
Sbjct: 234 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGK 264
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
Q ++ +++KS+F + G+++SC L RD TTG+
Sbjct: 240 QDLSDDDIKSVFEAFGKIKSCTLARDPTTGK 270
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 21 SASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
Q N + V LPQ M ++E++ LF +G V + RDK TG
Sbjct: 164 DGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTG 214
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
TN+ V + Q T+EE + LF GE+ S L RD +G+
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGK 275
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPE 84
NL + L + E+++ LFSS G + S K++RD FAPE
Sbjct: 340 VNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD-------------FAPE 378
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
L V L ++T+ + LFSS+G+V S ++ RD T
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 92
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2
PE=1 SV=2
Length = 580
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 55
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2
PE=2 SV=1
Length = 577
Score = 36.6 bits (83), Expect = 0.053, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 55
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2
PE=1 SV=1
Length = 577
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
P+ + S ++ V +P T+E++K +FS VG V S +L+ D+ TG+
Sbjct: 9 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 55
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
L V L + TQE ++S FS GEV C +++DKTT +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ 49
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE 72
L V L + TQE ++S FS GEV C +++DKTT +
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQ 49
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.118 0.311
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,136,179
Number of Sequences: 539616
Number of extensions: 1043324
Number of successful extensions: 4482
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 4078
Number of HSP's gapped (non-prelim): 462
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)