Query psy13318
Match_columns 100
No_of_seqs 206 out of 1261
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 16:25:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 8.5E-19 1.8E-23 109.7 9.6 73 27-99 29-110 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 6.1E-18 1.3E-22 117.9 10.2 70 30-99 267-345 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.3E-17 4.9E-22 115.1 8.3 69 31-99 2-79 (352)
4 TIGR01659 sex-lethal sex-letha 99.7 7.6E-17 1.7E-21 113.1 9.9 73 27-99 102-183 (346)
5 KOG0125|consensus 99.7 5.9E-16 1.3E-20 106.1 8.4 75 25-99 89-170 (376)
6 KOG0149|consensus 99.6 3.6E-16 7.9E-21 103.0 5.5 71 28-98 8-86 (247)
7 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.3E-20 83.8 6.2 61 35-96 1-70 (70)
8 KOG0126|consensus 99.6 3.5E-16 7.6E-21 99.9 3.7 71 28-98 31-110 (219)
9 KOG0121|consensus 99.6 1.4E-15 3E-20 92.4 5.0 72 28-99 32-112 (153)
10 TIGR01645 half-pint poly-U bin 99.6 3.1E-15 6.8E-20 110.8 7.1 70 29-98 104-182 (612)
11 KOG0145|consensus 99.6 9.7E-15 2.1E-19 98.0 8.6 73 27-99 36-117 (360)
12 KOG0113|consensus 99.6 7.4E-15 1.6E-19 99.7 7.8 72 28-99 97-177 (335)
13 TIGR01645 half-pint poly-U bin 99.6 5E-15 1.1E-19 109.7 7.5 70 30-99 202-280 (612)
14 PLN03120 nucleic acid binding 99.6 8E-15 1.7E-19 98.7 7.1 67 32-99 4-76 (260)
15 TIGR01659 sex-lethal sex-letha 99.6 8.1E-15 1.8E-19 102.9 7.4 71 29-99 190-271 (346)
16 KOG0107|consensus 99.6 1.6E-14 3.5E-19 91.7 6.9 65 30-99 8-81 (195)
17 TIGR01628 PABP-1234 polyadenyl 99.5 1.5E-14 3.2E-19 106.7 7.5 67 33-99 1-76 (562)
18 PF14259 RRM_6: RNA recognitio 99.5 2.6E-14 5.5E-19 78.7 6.6 61 35-96 1-70 (70)
19 PLN03121 nucleic acid binding 99.5 3.6E-14 7.8E-19 94.4 8.0 68 31-99 4-77 (243)
20 PLN03213 repressor of silencin 99.5 2.5E-14 5.5E-19 102.9 7.6 69 28-98 6-83 (759)
21 TIGR01622 SF-CC1 splicing fact 99.5 3.1E-14 6.7E-19 102.5 8.2 68 32-99 186-262 (457)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.5 8.8E-14 1.9E-18 101.2 10.6 71 29-99 292-371 (509)
23 KOG0122|consensus 99.5 3.3E-14 7E-19 94.3 6.9 73 27-99 184-265 (270)
24 TIGR01628 PABP-1234 polyadenyl 99.5 4.8E-14 1E-18 104.0 7.4 70 29-99 282-360 (562)
25 TIGR01622 SF-CC1 splicing fact 99.5 1.1E-13 2.4E-18 99.7 8.0 71 29-99 86-164 (457)
26 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.8E-18 91.1 7.0 68 32-99 115-191 (306)
27 TIGR01648 hnRNP-R-Q heterogene 99.5 1.6E-13 3.5E-18 101.4 7.7 69 29-98 55-133 (578)
28 KOG4207|consensus 99.5 8.9E-14 1.9E-18 90.6 5.3 73 27-99 8-89 (256)
29 KOG0108|consensus 99.4 2E-13 4.4E-18 97.9 6.0 67 33-99 19-94 (435)
30 smart00362 RRM_2 RNA recogniti 99.4 6.5E-13 1.4E-17 71.9 6.3 63 34-98 1-72 (72)
31 KOG0117|consensus 99.4 5.7E-13 1.2E-17 94.6 7.2 73 27-99 78-160 (506)
32 KOG0127|consensus 99.4 1.5E-12 3.3E-17 94.5 9.0 73 27-99 287-374 (678)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.6E-12 7.7E-17 92.9 10.0 68 29-99 272-347 (481)
34 KOG0111|consensus 99.4 3.3E-13 7.1E-18 88.8 3.8 72 28-99 6-86 (298)
35 KOG0148|consensus 99.4 8.7E-13 1.9E-17 88.8 5.6 68 32-99 62-138 (321)
36 KOG0124|consensus 99.4 1.9E-13 4.1E-18 95.5 2.5 67 32-98 113-188 (544)
37 KOG0131|consensus 99.4 3.7E-13 8E-18 86.1 3.4 72 28-99 5-85 (203)
38 KOG0105|consensus 99.4 2.1E-12 4.6E-17 83.1 6.6 69 30-99 4-79 (241)
39 smart00360 RRM RNA recognition 99.4 1.9E-12 4.2E-17 69.7 5.5 62 37-98 1-71 (71)
40 KOG0148|consensus 99.4 2.7E-12 5.9E-17 86.5 7.1 70 26-99 158-234 (321)
41 KOG0114|consensus 99.4 2.3E-12 5.1E-17 75.9 5.7 69 28-99 14-91 (124)
42 KOG0145|consensus 99.3 5.2E-12 1.1E-16 85.0 7.3 73 27-99 273-354 (360)
43 KOG0147|consensus 99.3 9.9E-13 2.2E-17 95.1 3.7 66 34-99 280-354 (549)
44 KOG0130|consensus 99.3 3E-12 6.5E-17 78.7 5.1 74 26-99 66-148 (170)
45 cd00590 RRM RRM (RNA recogniti 99.3 1E-11 2.2E-16 67.5 6.7 65 34-99 1-74 (74)
46 TIGR01648 hnRNP-R-Q heterogene 99.3 6.5E-12 1.4E-16 93.0 7.5 63 31-99 232-303 (578)
47 KOG0109|consensus 99.3 5.9E-12 1.3E-16 85.6 5.4 60 33-98 3-69 (346)
48 KOG0144|consensus 99.3 8.9E-12 1.9E-16 88.4 6.3 62 21-82 23-86 (510)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.7E-11 3.7E-16 89.4 7.9 64 32-99 2-74 (481)
50 KOG0127|consensus 99.2 2.4E-11 5.2E-16 88.4 6.3 70 29-99 114-192 (678)
51 KOG0146|consensus 99.2 7.3E-12 1.6E-16 84.6 3.0 73 27-99 280-361 (371)
52 KOG4205|consensus 99.2 6.2E-11 1.3E-15 82.1 6.4 52 31-82 5-58 (311)
53 KOG0117|consensus 99.2 4.1E-11 8.9E-16 85.3 4.8 62 32-99 259-327 (506)
54 KOG4212|consensus 99.1 1.7E-10 3.6E-15 82.4 5.9 72 26-100 530-608 (608)
55 KOG0124|consensus 99.1 2.3E-10 4.9E-15 80.3 5.9 70 28-97 206-284 (544)
56 KOG0109|consensus 99.1 1.3E-10 2.9E-15 79.1 4.4 65 29-99 75-146 (346)
57 smart00361 RRM_1 RNA recogniti 99.1 2.9E-10 6.3E-15 62.9 4.9 53 46-98 2-70 (70)
58 KOG0131|consensus 99.1 9.9E-11 2.2E-15 75.0 3.3 73 28-100 92-174 (203)
59 KOG0123|consensus 99.1 3E-10 6.5E-15 80.6 5.9 65 34-100 78-150 (369)
60 KOG0415|consensus 99.1 2.1E-10 4.6E-15 80.1 5.0 71 29-99 236-315 (479)
61 KOG0153|consensus 99.1 6.7E-10 1.4E-14 77.1 7.2 72 24-99 220-299 (377)
62 KOG4206|consensus 99.0 6.2E-10 1.4E-14 73.2 5.4 64 33-99 10-86 (221)
63 PF13893 RRM_5: RNA recognitio 99.0 8.5E-10 1.8E-14 58.3 4.4 48 49-99 1-55 (56)
64 KOG4208|consensus 99.0 7.7E-10 1.7E-14 72.1 4.9 73 27-99 44-126 (214)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.0 2.1E-09 4.5E-14 78.5 7.7 68 27-98 170-255 (509)
66 KOG4212|consensus 98.9 2.4E-09 5.2E-14 76.6 6.1 68 30-98 42-119 (608)
67 KOG0151|consensus 98.9 3.2E-09 6.9E-14 79.4 7.0 72 28-99 170-253 (877)
68 KOG0144|consensus 98.9 1.1E-09 2.4E-14 77.9 4.2 73 27-99 419-500 (510)
69 KOG0533|consensus 98.9 4.8E-09 1E-13 70.5 6.0 71 28-99 79-158 (243)
70 KOG0110|consensus 98.9 1.2E-09 2.5E-14 81.4 2.7 70 30-99 611-689 (725)
71 KOG4209|consensus 98.9 2.8E-09 6E-14 71.4 4.3 74 27-100 96-177 (231)
72 KOG0132|consensus 98.9 2.5E-09 5.4E-14 80.5 4.5 64 32-99 421-491 (894)
73 KOG4205|consensus 98.9 8.7E-09 1.9E-13 71.6 6.7 67 32-98 97-171 (311)
74 KOG1548|consensus 98.9 2.3E-08 4.9E-13 69.6 8.5 71 27-98 129-216 (382)
75 KOG4661|consensus 98.9 8.5E-09 1.8E-13 76.0 6.7 71 28-98 401-480 (940)
76 KOG0123|consensus 98.7 2.5E-08 5.4E-13 70.9 5.2 61 33-99 2-71 (369)
77 KOG0116|consensus 98.7 1.1E-07 2.4E-12 68.4 7.8 68 31-98 287-362 (419)
78 KOG4454|consensus 98.6 1.3E-08 2.9E-13 67.2 1.9 72 28-100 5-84 (267)
79 KOG4660|consensus 98.5 2.2E-08 4.9E-13 73.0 1.2 63 29-96 72-143 (549)
80 KOG0110|consensus 98.5 1.3E-07 2.9E-12 70.7 5.2 69 31-99 514-594 (725)
81 KOG0226|consensus 98.5 1.6E-07 3.5E-12 63.2 3.7 72 26-97 184-264 (290)
82 KOG0146|consensus 98.5 1.7E-07 3.6E-12 63.8 3.6 51 31-82 18-70 (371)
83 KOG0106|consensus 98.4 5.7E-07 1.2E-11 59.5 4.5 61 33-99 2-69 (216)
84 KOG1995|consensus 98.4 8.8E-07 1.9E-11 61.9 5.5 73 27-99 61-150 (351)
85 KOG0120|consensus 98.3 2.1E-06 4.6E-11 62.9 6.2 72 27-98 284-364 (500)
86 KOG1190|consensus 98.3 4.4E-06 9.5E-11 59.7 6.9 65 32-99 297-369 (492)
87 KOG0147|consensus 98.3 2.9E-07 6.2E-12 67.3 0.9 71 28-98 175-253 (549)
88 PF04059 RRM_2: RNA recognitio 98.1 1.3E-05 2.7E-10 47.1 6.2 60 32-91 1-71 (97)
89 KOG1457|consensus 98.1 4.1E-05 8.9E-10 51.1 8.9 72 28-99 30-114 (284)
90 KOG4211|consensus 98.0 1.5E-05 3.2E-10 58.0 5.5 66 29-97 7-80 (510)
91 KOG3152|consensus 98.0 1.9E-06 4E-11 58.1 0.6 63 32-94 74-157 (278)
92 KOG4206|consensus 97.6 0.00059 1.3E-08 45.4 8.0 68 28-99 142-218 (221)
93 KOG4210|consensus 97.5 4E-05 8.7E-10 53.0 1.7 66 32-97 184-258 (285)
94 COG5175 MOT2 Transcriptional r 97.5 0.0002 4.3E-09 50.5 4.5 68 32-99 114-199 (480)
95 PF08777 RRM_3: RNA binding mo 97.5 0.00026 5.6E-09 42.1 4.3 46 33-82 2-47 (105)
96 KOG0106|consensus 97.3 0.00061 1.3E-08 45.3 4.5 64 28-97 95-165 (216)
97 KOG4211|consensus 97.3 0.0008 1.7E-08 49.2 5.4 66 31-97 102-176 (510)
98 PF11608 Limkain-b1: Limkain b 97.2 0.00093 2E-08 38.2 4.0 59 33-99 3-73 (90)
99 KOG0129|consensus 97.2 0.0013 2.8E-08 48.4 5.6 57 26-82 364-423 (520)
100 KOG1457|consensus 97.1 0.00039 8.4E-09 46.6 2.0 52 29-82 207-258 (284)
101 KOG4849|consensus 97.0 0.00065 1.4E-08 48.2 2.9 67 28-94 76-153 (498)
102 KOG1190|consensus 96.9 0.00094 2E-08 48.1 3.3 50 29-82 25-74 (492)
103 PF08952 DUF1866: Domain of un 96.9 0.0034 7.3E-08 39.4 5.0 46 48-99 52-103 (146)
104 KOG0120|consensus 96.8 0.0027 5.8E-08 47.0 4.9 52 49-100 426-489 (500)
105 KOG2314|consensus 96.8 0.0058 1.3E-07 45.8 6.5 70 30-100 56-141 (698)
106 KOG0129|consensus 96.4 0.0042 9.1E-08 45.8 3.7 55 27-82 254-316 (520)
107 KOG4676|consensus 96.3 0.012 2.6E-07 42.4 5.3 65 34-98 9-84 (479)
108 KOG0128|consensus 96.3 0.0024 5.2E-08 49.5 1.8 50 32-82 736-787 (881)
109 KOG0115|consensus 96.2 0.0039 8.4E-08 42.4 2.5 49 33-82 32-82 (275)
110 KOG4307|consensus 96.2 0.029 6.3E-07 43.2 7.2 65 34-99 869-943 (944)
111 KOG1996|consensus 95.9 0.018 3.9E-07 40.1 4.6 53 47-99 301-363 (378)
112 KOG1456|consensus 95.8 0.046 1E-06 39.4 6.4 70 27-99 282-359 (494)
113 KOG4307|consensus 95.5 0.052 1.1E-06 41.9 6.1 71 27-98 429-509 (944)
114 KOG0128|consensus 95.1 0.0036 7.7E-08 48.6 -1.2 50 33-82 668-719 (881)
115 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.028 6E-07 36.4 3.0 62 29-90 4-80 (176)
116 KOG1365|consensus 95.0 0.025 5.5E-07 40.8 3.0 52 30-82 278-334 (508)
117 PF14605 Nup35_RRM_2: Nup53/35 94.9 0.084 1.8E-06 27.4 4.1 45 33-82 2-46 (53)
118 KOG0112|consensus 94.9 0.011 2.4E-07 46.3 0.9 54 29-82 369-423 (975)
119 KOG0112|consensus 94.7 0.099 2.1E-06 41.3 5.6 68 28-99 451-527 (975)
120 KOG2416|consensus 94.6 0.025 5.5E-07 42.7 2.1 67 29-99 441-518 (718)
121 KOG1855|consensus 94.4 0.069 1.5E-06 39.0 3.9 37 31-67 230-266 (484)
122 KOG2135|consensus 94.3 0.052 1.1E-06 40.0 3.1 61 35-99 375-442 (526)
123 KOG1548|consensus 94.0 0.14 3E-06 36.5 4.7 69 27-99 260-348 (382)
124 KOG0105|consensus 93.9 0.39 8.4E-06 31.7 6.2 43 26-68 109-151 (241)
125 KOG1456|consensus 93.6 0.62 1.3E-05 33.8 7.3 51 28-82 27-77 (494)
126 PF05172 Nup35_RRM: Nup53/35/4 93.4 0.37 7.9E-06 28.4 5.2 63 32-95 6-83 (100)
127 KOG1365|consensus 92.3 0.8 1.7E-05 33.4 6.5 51 31-82 160-216 (508)
128 KOG2591|consensus 92.3 0.32 6.9E-06 36.8 4.7 48 29-82 172-222 (684)
129 KOG2068|consensus 91.9 0.028 6E-07 39.6 -1.2 66 33-98 78-158 (327)
130 KOG2193|consensus 91.6 0.12 2.6E-06 37.9 1.8 60 33-98 2-71 (584)
131 KOG2253|consensus 90.4 0.26 5.7E-06 37.7 2.6 50 26-82 34-83 (668)
132 KOG2202|consensus 89.6 0.077 1.7E-06 36.2 -0.6 50 48-98 84-143 (260)
133 KOG4410|consensus 86.8 5.1 0.00011 28.3 6.8 52 27-82 325-377 (396)
134 PF08675 RNA_bind: RNA binding 85.1 0.96 2.1E-05 25.9 2.2 43 34-82 10-52 (87)
135 PF07576 BRAP2: BRCA1-associat 84.4 6.7 0.00015 23.5 6.5 59 31-91 11-80 (110)
136 PF04847 Calcipressin: Calcipr 81.8 5.3 0.00012 26.1 5.0 50 46-99 9-67 (184)
137 smart00596 PRE_C2HC PRE_C2HC d 80.5 7.2 0.00016 21.4 4.5 52 47-98 2-60 (69)
138 KOG4285|consensus 79.9 15 0.00033 26.1 6.9 51 37-95 202-261 (350)
139 PF15023 DUF4523: Protein of u 78.7 11 0.00024 23.9 5.4 51 27-82 81-135 (166)
140 KOG0804|consensus 76.9 12 0.00027 27.9 6.0 60 32-91 74-141 (493)
141 PF10567 Nab6_mRNP_bdg: RNA-re 70.9 4 8.6E-05 28.7 2.2 37 32-68 15-51 (309)
142 PF03880 DbpA: DbpA RNA bindin 70.4 14 0.00031 20.1 4.1 53 41-99 10-73 (74)
143 PF07292 NID: Nmi/IFP 35 domai 70.3 3.4 7.4E-05 23.8 1.6 26 28-53 48-73 (88)
144 PF15513 DUF4651: Domain of un 65.1 8.7 0.00019 20.7 2.4 18 47-64 9-26 (62)
145 KOG4210|consensus 62.8 3.7 8E-05 28.6 0.9 53 30-82 86-140 (285)
146 PF07530 PRE_C2HC: Associated 61.6 24 0.00053 19.1 4.7 52 47-98 2-60 (68)
147 PF10309 DUF2414: Protein of u 59.0 27 0.00058 18.7 4.2 37 31-68 4-43 (62)
148 KOG4454|consensus 57.5 2.4 5.3E-05 28.7 -0.7 54 27-81 75-134 (267)
149 COG0030 KsgA Dimethyladenosine 55.9 25 0.00055 24.3 4.0 34 32-65 95-128 (259)
150 KOG4008|consensus 54.8 14 0.0003 25.4 2.5 36 27-62 35-70 (261)
151 PF11767 SET_assoc: Histone ly 52.6 37 0.0008 18.4 4.8 47 43-97 11-65 (66)
152 KOG2891|consensus 51.9 16 0.00034 25.9 2.5 37 29-65 146-194 (445)
153 PF11411 DNA_ligase_IV: DNA li 51.7 12 0.00026 17.8 1.4 16 42-57 19-34 (36)
154 COG0724 RNA-binding proteins ( 50.8 39 0.00084 21.7 4.2 43 26-68 219-261 (306)
155 KOG4676|consensus 50.6 3 6.5E-05 30.6 -1.2 35 32-66 151-185 (479)
156 PF00398 RrnaAD: Ribosomal RNA 46.7 24 0.00051 24.0 2.7 34 31-64 96-131 (262)
157 PHA01632 hypothetical protein 46.3 24 0.00052 18.6 2.1 20 36-55 20-39 (64)
158 KOG4365|consensus 45.4 4.3 9.2E-05 30.3 -1.1 50 33-82 4-55 (572)
159 KOG2318|consensus 44.1 46 0.00099 25.9 4.0 40 27-66 169-213 (650)
160 PF14893 PNMA: PNMA 44.0 26 0.00057 25.1 2.7 53 29-82 15-72 (331)
161 PRK11558 putative ssRNA endonu 39.7 80 0.0017 18.5 4.0 50 30-82 25-76 (97)
162 KOG4660|consensus 39.3 31 0.00068 26.4 2.5 62 29-90 358-456 (549)
163 PF13046 DUF3906: Protein of u 36.6 58 0.0013 17.6 2.7 34 44-77 30-63 (64)
164 PRK00274 ksgA 16S ribosomal RN 36.4 62 0.0013 22.1 3.5 32 34-65 107-138 (272)
165 PTZ00338 dimethyladenosine tra 35.4 58 0.0013 22.8 3.3 31 34-64 103-133 (294)
166 TIGR00755 ksgA dimethyladenosi 34.1 66 0.0014 21.6 3.4 25 34-58 96-120 (253)
167 PF09707 Cas_Cas2CT1978: CRISP 33.2 98 0.0021 17.7 4.4 47 30-79 23-71 (86)
168 TIGR01873 cas_CT1978 CRISPR-as 32.9 49 0.0011 19.0 2.2 26 30-55 23-48 (87)
169 COG5584 Predicted small secret 30.4 95 0.002 18.3 3.1 32 39-70 29-60 (103)
170 smart00650 rADc Ribosomal RNA 30.3 1.1E+02 0.0024 19.0 3.8 24 33-56 78-101 (169)
171 cd00027 BRCT Breast Cancer Sup 30.0 78 0.0017 15.5 3.1 26 33-58 2-27 (72)
172 PF03468 XS: XS domain; Inter 29.8 1.1E+02 0.0023 18.4 3.4 35 45-82 30-66 (116)
173 PF05189 RTC_insert: RNA 3'-te 27.6 1.1E+02 0.0024 17.6 3.2 30 34-63 12-44 (103)
174 PHA02531 20 portal vertex prot 26.6 55 0.0012 24.9 2.0 38 34-75 283-320 (514)
175 PF07230 Peptidase_S80: Bacter 24.3 68 0.0015 24.4 2.2 41 35-79 281-324 (501)
176 PF14112 DUF4284: Domain of un 24.1 95 0.0021 18.7 2.5 19 33-54 2-20 (122)
177 PF15063 TC1: Thyroid cancer p 24.0 73 0.0016 17.9 1.8 30 30-59 23-52 (79)
178 PF09445 Methyltransf_15: RNA 23.4 1.1E+02 0.0023 19.6 2.8 41 39-79 118-160 (163)
179 KOG3432|consensus 20.9 1.1E+02 0.0024 18.5 2.2 25 41-65 42-66 (121)
180 PF09671 Spore_GerQ: Spore coa 20.8 1.4E+02 0.0031 16.8 2.5 19 63-81 51-76 (81)
181 PF06014 DUF910: Bacterial pro 20.8 66 0.0014 17.3 1.2 17 46-62 4-20 (62)
182 TIGR00006 S-adenosyl-methyltra 20.4 68 0.0015 22.7 1.5 19 43-61 140-158 (305)
183 smart00457 MACPF membrane-atta 20.4 59 0.0013 21.0 1.1 22 37-58 30-51 (194)
184 PRK00050 16S rRNA m(4)C1402 me 20.4 69 0.0015 22.6 1.5 19 43-61 138-156 (296)
185 COG4733 Phage-related protein, 20.1 1.6E+02 0.0035 24.2 3.5 60 33-97 176-243 (952)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=8.5e-19 Score=109.71 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.|+.+++++| ||+|.+. ..||+..|.|++|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4466778999999999999999999999999999999999999999999 9999988 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 109 ~~ 110 (144)
T PLN03134 109 NP 110 (144)
T ss_pred Ee
Confidence 86
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.76 E-value=6.1e-18 Score=117.94 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....+|||+|||+++++++|+++|++||.|.+++++.|+.||+++| ||+|.+. ..|||..|+||+|+|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4445799999999999999999999999999999999999999999 9999997 88999999999999987
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=2.3e-17 Score=115.08 Aligned_cols=69 Identities=59% Similarity=0.841 Sum_probs=65.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+.++|||+|||..+++++|+++|++||+|.+|+|+.|+.+|+++| ||+|.+. ..|||..|.|++|+|.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEe
Confidence 578999999999999999999999999999999999999999999 9999987 78999999999999975
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=7.6e-17 Score=113.09 Aligned_cols=73 Identities=37% Similarity=0.596 Sum_probs=67.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|+.||.|++|+|+.|+.+++++| ||+|.++ ..||+..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4556788999999999999999999999999999999999999999998 9999887 789999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 182 ~~ 183 (346)
T TIGR01659 182 SY 183 (346)
T ss_pred ec
Confidence 75
No 5
>KOG0125|consensus
Probab=99.66 E-value=5.9e-16 Score=106.12 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=65.5
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 25 TPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 25 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.++..+..++|+|+|||+...+.||+.+|++||.|.+|.|+.+....+..|||+|++. .+|+|..+.||+|.|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3455666789999999999999999999999999999999998864443449999998 999999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
..
T Consensus 169 n~ 170 (376)
T KOG0125|consen 169 NN 170 (376)
T ss_pred ec
Confidence 63
No 6
>KOG0149|consensus
Probab=99.64 E-value=3.6e-16 Score=102.97 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
.|..-++||||+|+|.++.++|+..|++||+|.++.++.|+.||+++| ||+|.+. ..--.-.|+||+-.++
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccc
Confidence 456678999999999999999999999999999999999999999999 9999987 2333346677765443
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.1e-15 Score=83.77 Aligned_cols=61 Identities=33% Similarity=0.524 Sum_probs=56.6
Q ss_pred EEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 35 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
|||+|||.++++++|+++|++||.|..+.+..+ .+++.+| ||+|.+. ..++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5677777 9999998 77999999999986
No 8
>KOG0126|consensus
Probab=99.62 E-value=3.5e-16 Score=99.93 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.-...+-|||||||+..||.||.-.|++||+|..|.+++|+.||+++| |..|++. ..|||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 345567899999999999999999999999999999999999999999 9999987 8999999999999985
No 9
>KOG0121|consensus
Probab=99.60 E-value=1.4e-15 Score=92.42 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++||||||++.++|+.|.++|+++|+|+.|-+-.|+.+-.++| ||+|..+ +-++|+.|..++|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 345678999999999999999999999999999999999999999999 9999887 8899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 112 ~ 112 (153)
T KOG0121|consen 112 W 112 (153)
T ss_pred c
Confidence 7
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=3.1e-15 Score=110.76 Aligned_cols=70 Identities=13% Similarity=0.202 Sum_probs=65.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
....++|||+|||+++++++|+++|++||.|.+|+++.|+.+|+++| ||+|.+. ..|||..+.||+|+|.
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34567999999999999999999999999999999999999999999 9999998 7899999999999985
No 11
>KOG0145|consensus
Probab=99.59 E-value=9.7e-15 Score=98.01 Aligned_cols=73 Identities=55% Similarity=0.807 Sum_probs=69.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
..++.+++|.|.-||..+|+++++.+|+..|+|++|++++|+-+|++-| ||.|.++ ..|||..|+.+.|||
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 4578889999999999999999999999999999999999999999999 9999887 889999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
++
T Consensus 116 Sy 117 (360)
T KOG0145|consen 116 SY 117 (360)
T ss_pred Ee
Confidence 96
No 12
>KOG0113|consensus
Probab=99.58 E-value=7.4e-15 Score=99.67 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=67.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
..++-++|||+-|+++++|.+|+..|+.||.|+.+.|+.|+.||+++| ||+|+.+ +..+|..|+|++|-|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 357788999999999999999999999999999999999999999999 9999998 8889999999999987
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 177 v 177 (335)
T KOG0113|consen 177 V 177 (335)
T ss_pred e
Confidence 5
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=5e-15 Score=109.71 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|+.||.|.++++..|+.+|+++| ||+|++. ..||+..|+|+.|+|.+
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEe
Confidence 3457999999999999999999999999999999999999999998 9999997 89999999999999975
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=8e-15 Score=98.68 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=59.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.|+.+ +..|||+|.++ ..|||..|.|++|+|++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~-~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENER-SQIAYVTFKDPQGAETALLLSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEe
Confidence 469999999999999999999999999999999998742 22339999987 77999999999999975
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.57 E-value=8.1e-15 Score=102.93 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=63.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCC--eeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQT--ERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g--~~i~V 97 (100)
....++|||+|||+++++++|+++|++||.|++++|+.|+.+++++| ||+|.+. ..||+..+.+ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 34567899999999999999999999999999999999999999998 9999887 8899998876 67888
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 270 ~~ 271 (346)
T TIGR01659 270 RL 271 (346)
T ss_pred EE
Confidence 65
No 16
>KOG0107|consensus
Probab=99.55 E-value=1.6e-14 Score=91.71 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=59.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++||||||+..+++.||+.+|..||.+..|.|..++ .| ||+|+++ ..|||..|.|.+|+|.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 457899999999999999999999999999999998854 35 9999998 99999999999999986
No 17
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=1.5e-14 Score=106.72 Aligned_cols=67 Identities=22% Similarity=0.171 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||.+++|++|+++|++||.|.+|++.+|+.|++++| ||+|.+. ..+|+..+.|++|+|.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~ 76 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMW 76 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeec
Confidence 4799999999999999999999999999999999999999999 9999997 78899999999999976
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.6e-14 Score=78.75 Aligned_cols=61 Identities=28% Similarity=0.468 Sum_probs=54.6
Q ss_pred EEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 35 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
|||+|||+++++++|+++|+.||.|..+.+..++. ++.+| ||+|.+. ..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 88888 9999998 66778999999885
No 19
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.6e-14 Score=94.44 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
...+|||+||++.+++++|+++|+.||+|.+|+|++|..++ ..|||+|.++ ..|+|..|.+++|.|.-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~-gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYA-CTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcc-eEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 45799999999999999999999999999999999986443 2349999998 89999999999999863
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.5e-14 Score=102.92 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=60.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC---------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA---------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~---------~~lng~~l~g~~i~V~ 98 (100)
......+||||||++.+++++|+.+|..||.|.+|.|+ +.+|+..|||+|... ..|||..+.|+.|+|.
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34556899999999999999999999999999999999 456744449999865 8899999999999996
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=3.1e-14 Score=102.52 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=64.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||..+++++|+++|++||.|..|.++.++.+|+++| ||+|.+. ..|||..|.|++|+|.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 67999999999999999999999999999999999999999998 9999997 78999999999999987
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=8.8e-14 Score=101.24 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=65.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.....+|||+|||..+++++|+++|+.||.|..+.++.++.+|.++| ||+|.+. ..|||..|.|+.|+|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999999999999999 9999987 78999999999999875
No 23
>KOG0122|consensus
Probab=99.53 E-value=3.3e-14 Score=94.34 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
...+..++|-|.|||.+++|++|+++|.+||.|.++.+.+|+.||.++| ||+|+++ ..|||+-++.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 3455677899999999999999999999999999999999999999999 9999998 899999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 264 Ew 265 (270)
T KOG0122|consen 264 EW 265 (270)
T ss_pred Ee
Confidence 87
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.51 E-value=4.8e-14 Score=104.00 Aligned_cols=70 Identities=26% Similarity=0.321 Sum_probs=64.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+||+.++++++|+++|++||.|.+++++.| .+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345668999999999999999999999999999999999 5788888 9999997 78999999999999986
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.1e-13 Score=99.67 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=65.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
.....+|||+|||..+++++|+++|++||.|.+|.++.|+.+++++| ||+|.+. ..|+|..+.|++|.|..
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34567899999999999999999999999999999999999999999 9999997 77999999999998853
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=91.07 Aligned_cols=68 Identities=29% Similarity=0.450 Sum_probs=65.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+|||+|||..+++++|+++|.+||.|..+.+..|+.+++++| ||+|.+. ..++|..|.|++|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 68999999999999999999999999999999999998999999 9999998 89999999999999975
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=1.6e-13 Score=101.39 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=61.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC-CeeeEEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ-TERSRKS 98 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~-g~~i~V~ 98 (100)
....++|||+|||++++|++|+++|++||.|.+++|++| .+|+++| ||+|.+. ..||+..+. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456789999999999999999999999999999999999 7899999 9999997 788998885 7777664
No 28
>KOG4207|consensus
Probab=99.47 E-value=8.9e-14 Score=90.60 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=67.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
++-+..+.|-|-||.+.++.++|+.+|++||.|-+|.|+.|+.|+.++| ||-|... ..|+|..|+|+.|+|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 4555667899999999999999999999999999999999999999999 9999876 899999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
+|
T Consensus 88 q~ 89 (256)
T KOG4207|consen 88 QM 89 (256)
T ss_pred hh
Confidence 76
No 29
>KOG0108|consensus
Probab=99.44 E-value=2e-13 Score=97.89 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=65.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+||||+|+++++++|..+|+..|.|.+++++.|+.||+.+| |++|.+. +.|||..+.||+|+|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 7999999999999999999999999999999999999999999 9999996 99999999999999986
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=6.5e-13 Score=71.91 Aligned_cols=63 Identities=32% Similarity=0.434 Sum_probs=56.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
+|||+|||..+++++|+++|.+||.+..+.+..++ +.++| ||+|.+. ..+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 45556 9999998 7789999999999874
No 31
>KOG0117|consensus
Probab=99.42 E-value=5.7e-13 Score=94.60 Aligned_cols=73 Identities=16% Similarity=0.260 Sum_probs=67.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCcee-CCeeeE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHS-QTERSR 96 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l-~g~~i~ 96 (100)
......+-||||.||.++.|++|..+|++.|+|-+++|++|+.+|.+|| ||+|.+. +.||++.| .||.|+
T Consensus 78 ~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 78 PPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 3447788999999999999999999999999999999999999999999 9999887 89999988 599999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|++
T Consensus 158 vc~ 160 (506)
T KOG0117|consen 158 VCV 160 (506)
T ss_pred EEE
Confidence 874
No 32
>KOG0127|consensus
Probab=99.41 E-value=1.5e-12 Score=94.50 Aligned_cols=73 Identities=25% Similarity=0.324 Sum_probs=64.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------------CccCC-ceeC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------------PELNG-LHSQ 91 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------------~~lng-~~l~ 91 (100)
.+.....+|||+|||+++++++|.+.|++||+|..+.++.++.|+.++| ||.|.++ ..-.| ..|+
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 3445568999999999999999999999999999999999999999999 9999987 22334 8899
Q ss_pred CeeeEEEe
Q psy13318 92 TERSRKSM 99 (100)
Q Consensus 92 g~~i~V~~ 99 (100)
||.|+|..
T Consensus 367 GR~Lkv~~ 374 (678)
T KOG0127|consen 367 GRLLKVTL 374 (678)
T ss_pred ccEEeeee
Confidence 99999874
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.39 E-value=3.6e-12 Score=92.90 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=59.7
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+ .+++++|+++|+.||.|.+|+++.++ +..|||+|.+. ..|||..|.|++|+|++
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 34567999999998 69999999999999999999999864 23349999997 78999999999999975
No 34
>KOG0111|consensus
Probab=99.39 E-value=3.3e-13 Score=88.85 Aligned_cols=72 Identities=15% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
....+++||||+|...++|.-|...|-+||.|..+.++.|-.++++|| ||+|+.+ ..||+..|-||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 355677999999999999999999999999999999999999999999 9999876 8999999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 86 ~ 86 (298)
T KOG0111|consen 86 L 86 (298)
T ss_pred e
Confidence 6
No 35
>KOG0148|consensus
Probab=99.38 E-value=8.7e-13 Score=88.84 Aligned_cols=68 Identities=24% Similarity=0.346 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
-..+||+-|...++.++|++.|.+||+|.++++++|..|++++| ||.|.+. ..|||.-|++|.||-+|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 44799999999999999999999999999999999999999999 9999887 89999999999999776
No 36
>KOG0124|consensus
Probab=99.38 E-value=1.9e-13 Score=95.51 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
-+++|||.+.+.+.|+.|+..|.+||.|+++.+..|+.|++++| ||+|+-+ +.|||..++||.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 57999999999999999999999999999999999999999999 9999988 8999999999999984
No 37
>KOG0131|consensus
Probab=99.37 E-value=3.7e-13 Score=86.06 Aligned_cols=72 Identities=19% Similarity=0.192 Sum_probs=66.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
+.+...+||||||+..++++-|.++|-+.|+|..+++++|+.+...+| ||+|.++ +-||...|.||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 456677999999999999999999999999999999999999998888 9999988 8899999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
.
T Consensus 85 k 85 (203)
T KOG0131|consen 85 K 85 (203)
T ss_pred e
Confidence 3
No 38
>KOG0105|consensus
Probab=99.37 E-value=2.1e-12 Score=83.11 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||||||.++.+.+++++|.+||.|.+|.+...+ ...+..||+|+++ ..-+|..++|.+|+|.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~-g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP-GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC-CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 446799999999999999999999999999999875433 1233339999998 77889999999999975
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=1.9e-12 Score=69.73 Aligned_cols=62 Identities=34% Similarity=0.491 Sum_probs=56.5
Q ss_pred EcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 37 VNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 37 V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
|+|||..+++++|+++|.+||.|..+.+..++.++.++| ||+|.+. ..+++..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999999887788888 9999987 7888999999999874
No 40
>KOG0148|consensus
Probab=99.36 E-value=2.7e-12 Score=86.51 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=62.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.+.....++|||||++..++|++|++.|++||.|.+|++..++ ...||.|++. ..+|+..+.|..+|++
T Consensus 158 NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 158 NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred ccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 3566778999999999999999999999999999999998764 1229999987 8899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 234 W 234 (321)
T KOG0148|consen 234 W 234 (321)
T ss_pred c
Confidence 7
No 41
>KOG0114|consensus
Probab=99.35 E-value=2.3e-12 Score=75.85 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=61.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
+.+...-|||.|||+.+|.++..++|.+||.|..+++-.++. .+| ||.|++. ..|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 355667899999999999999999999999999999987664 457 9999987 8999999999999886
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 91 y 91 (124)
T KOG0114|consen 91 Y 91 (124)
T ss_pred e
Confidence 5
No 42
>KOG0145|consensus
Probab=99.34 E-value=5.2e-12 Score=85.01 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
..+....-|||=||.++++|.-|+++|.+||.|..+++++|..|.+++| ||++.+- ..|||+.+++|.|.|
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 4455578999999999999999999999999999999999999999999 9999775 999999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
++
T Consensus 353 sF 354 (360)
T KOG0145|consen 353 SF 354 (360)
T ss_pred EE
Confidence 86
No 43
>KOG0147|consensus
Probab=99.33 E-value=9.9e-13 Score=95.08 Aligned_cols=66 Identities=23% Similarity=0.380 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+||||||++++++++|+.+|++||.|..|.+.+|..||+++| ||+|.+. ..|||..|-|+.|+|+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 399999999999999999999999999999999999999999 9999887 89999999999999974
No 44
>KOG0130|consensus
Probab=99.32 E-value=3e-12 Score=78.68 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
++.......|||.+++..++|+++.+.|..||+|+.+.+-.|+.||..+| .|+|++. ..+||..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 45667788999999999999999999999999999999999999999999 8999886 89999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 146 VDw 148 (170)
T KOG0130|consen 146 VDW 148 (170)
T ss_pred EEE
Confidence 988
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.32 E-value=1e-11 Score=67.50 Aligned_cols=65 Identities=32% Similarity=0.454 Sum_probs=57.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+|+|++||..+++++|+++|..+|.|..+.+..++.+ ..+| ||+|.+. ..+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987754 4455 9999987 77999999999999875
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.32 E-value=6.5e-12 Score=93.00 Aligned_cols=63 Identities=30% Similarity=0.293 Sum_probs=56.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhcc--CcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSV--GEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~--G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+++++++|+++|++| |.|++|.++++ .+||+|.+. ..|||..|.|+.|+|+|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD------YAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC------eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35689999999999999999999999 99999987643 359999997 78999999999999986
No 47
>KOG0109|consensus
Probab=99.29 E-value=5.9e-12 Score=85.62 Aligned_cols=60 Identities=22% Similarity=0.366 Sum_probs=55.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.+|||||||..+++.+|+.+|++||+|.+|.|++ +.|||..++. +.|+|..|+|.-|+|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK------NYgFVHiEdktaaedairNLhgYtLhg~nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVK------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeec------ccceEEeecccccHHHHhhcccceecceEEEEE
Confidence 4799999999999999999999999999999996 4579999887 7899999999999985
No 48
>KOG0144|consensus
Probab=99.28 E-value=8.9e-12 Score=88.39 Aligned_cols=62 Identities=27% Similarity=0.442 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 21 SASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 21 ~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+.+.....|.+..++|||.+|...+|.||+++|++||.|.+|.|++|+.|+.++| ||+|.++
T Consensus 23 ~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~tr 86 (510)
T KOG0144|consen 23 SLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTR 86 (510)
T ss_pred CCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccH
Confidence 3344445667778999999999999999999999999999999999999999999 9999887
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.28 E-value=1.7e-11 Score=89.37 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=55.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------C--ccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------P--ELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~--~lng~~l~g~~i~V~~ 99 (100)
.+.|||+|||+++++++|+++|++||.|.+|.++.++ ..|||+|++. . .+++..+.|++|+|.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k----~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK----RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC----CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999988643 3459999997 2 3588999999999986
No 50
>KOG0127|consensus
Probab=99.23 E-value=2.4e-11 Score=88.35 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+.+..+|.|+|||+.+...+|+.+|+.||.|.++.|++.+. |+.+| ||.|... ..+|+..|.||+|-|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 34478999999999999999999999999999999997665 55668 9999887 89999999999999998
No 51
>KOG0146|consensus
Probab=99.22 E-value=7.3e-12 Score=84.61 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.+..+.++|||=.||.+..+.+|.+.|-+||.|.+.++..|+.|..+++ ||.|.++ ..|||..|+-|+|||
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 5567899999999999999999999999999999999999999998888 9999998 999999999999998
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 360 QL 361 (371)
T KOG0146|consen 360 QL 361 (371)
T ss_pred hh
Confidence 64
No 52
>KOG4205|consensus
Probab=99.18 E-value=6.2e-11 Score=82.13 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=50.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
..++|||++|+++++++.|++.|++||+|.+|.+++|+.+++++| ||+|.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~ 58 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATP 58 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCC
Confidence 678999999999999999999999999999999999999999999 9999976
No 53
>KOG0117|consensus
Probab=99.16 E-value=4.1e-11 Score=85.30 Aligned_cols=62 Identities=27% Similarity=0.295 Sum_probs=56.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
-+.|||.||+.++|++.|+++|++||.|.+|+.++| .+||.|.++ +.+||+.|.|..|.|++
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 346899999999999999999999999999998876 359999998 99999999999999986
No 54
>KOG4212|consensus
Probab=99.11 E-value=1.7e-10 Score=82.41 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=63.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....+.++|||.|||++.|++.|++-|..||.|..+.|+. .|+++|-|.|.++ ..|||..|.||-|+|.
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccceEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 45667788999999999999999999999999999998843 4789997777776 8899999999999999
Q ss_pred eC
Q psy13318 99 MF 100 (100)
Q Consensus 99 ~~ 100 (100)
+|
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 87
No 55
>KOG0124|consensus
Probab=99.09 E-value=2.3e-10 Score=80.30 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=64.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
+...-.+|||..++++.+++||+..|+-||+|..|.+.+++.++.++| |++|.+. ..||-+.|+|..|+|
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRV 284 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 284 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEec
Confidence 344566899999999999999999999999999999999999888998 9999987 889999999999987
No 56
>KOG0109|consensus
Probab=99.09 E-value=1.3e-10 Score=79.13 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=58.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|+||||.+.++.++|+..|++||.|.+|.|++|- +||.|+.. +.||+..++|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy------~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY------AFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecce------eEEEEeeccchHHHHhcccccccccceeeeee
Confidence 4567899999999999999999999999999999999865 39999776 89999999999999975
No 57
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=2.9e-10 Score=62.86 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHhhh----ccCcceEEE-EeecCCC--CCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 46 QEEMKSLFS----SVGEVESCK-LIRDKTT--GELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 46 ~~~l~~~F~----~~G~v~~~~-~~~d~~t--g~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
+++|+++|+ +||.|.++. +..++.+ +.++| ||+|.+. ..|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888888 999999995 7777766 88888 9999998 8899999999999874
No 58
>KOG0131|consensus
Probab=99.08 E-value=9.9e-11 Score=75.02 Aligned_cols=73 Identities=25% Similarity=0.221 Sum_probs=64.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE-EEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES-CKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......+|||+||.+.++|..|.+.|+.||.+.+ .++++|+.||.++| ||.|.+. ..+||..+..++|.|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 3445589999999999999999999999998765 58999999999987 8888776 899999999999999
Q ss_pred EeC
Q psy13318 98 SMF 100 (100)
Q Consensus 98 ~~~ 100 (100)
+++
T Consensus 172 ~ya 174 (203)
T KOG0131|consen 172 SYA 174 (203)
T ss_pred EEE
Confidence 874
No 59
>KOG0123|consensus
Probab=99.07 E-value=3e-10 Score=80.58 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=60.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC-------CccCCceeCCeeeEEEeC
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA-------PELNGLHSQTERSRKSMF 100 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~-------~~lng~~l~g~~i~V~~~ 100 (100)
.+||.||+++++..+|.++|+.||.|.+|++..|.. | ++| ||+|+++ ..+||..+.|++|.|..|
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGYFVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceeeEEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 399999999999999999999999999999999886 4 788 9999998 999999999999998764
No 60
>KOG0415|consensus
Probab=99.07 E-value=2.1e-10 Score=80.06 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+..-|||.-|.+-+++++|.-+|+.||.|.+|.+++|..||.+-. ||+|++. -.|+...|..++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34455799999999999999999999999999999999999998877 9999998 78999999999999975
No 61
>KOG0153|consensus
Probab=99.06 E-value=6.7e-10 Score=77.10 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=62.5
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC--------CccCCceeCCeee
Q psy13318 24 QTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA--------PELNGLHSQTERS 95 (100)
Q Consensus 24 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~--------~~lng~~l~g~~i 95 (100)
..+.+|..-++|||++|-..++|.+|++.|.+||+|+++.+...+ .+.||+|.++ +.+|...|+|++|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 345678888899999999999999999999999999999987632 2339999987 8889999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.|
T Consensus 296 ~i~W 299 (377)
T KOG0153|consen 296 KIKW 299 (377)
T ss_pred EEEe
Confidence 9987
No 62
>KOG4206|consensus
Probab=99.02 E-value=6.2e-10 Score=73.25 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=57.6
Q ss_pred ceEEEcCCCCCCCHHHHHH----hhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKS----LFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~----~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.+|||.||+..+..++|+. +|++||.|.+|.... |.+.|| ||.|.+. ..|+|..+-|++++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999887 999999999988765 457889 9999986 99999999999999875
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.00 E-value=8.5e-10 Score=58.27 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 49 MKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 49 l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
|.++|++||+|.++.+..+. ...+||+|.+. ..|||..+.|++|+|+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999987654 23349999998 78999999999999987
No 64
>KOG4208|consensus
Probab=98.99 E-value=7.7e-10 Score=72.07 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhcc-CcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSV-GEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~-G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
+......-+||..+|....+..+..+|.+| |.+.+.++.+++.||.++| ||+|++. +.||++.+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 445556678999999999999999999998 7888999999999999999 9999998 99999999999998
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
+.+
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 865
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.99 E-value=2.1e-09 Score=78.46 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=52.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhcc------------CcceEEEEeecCCCCCeeeEEEeCCC------CccCCc
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSV------------GEVESCKLIRDKTTGELSVVANSIFA------PELNGL 88 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~------------G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~ 88 (100)
.......+|||||||+.+++++|.++|..+ +.|..+.+..+ +..|||+|.+. ..|||.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~----kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE----KNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC----CCEEEEEeCCHHHHhhhhcCCCe
Confidence 445567799999999999999999999975 23334443221 22349999987 679999
Q ss_pred eeCCeeeEEE
Q psy13318 89 HSQTERSRKS 98 (100)
Q Consensus 89 ~l~g~~i~V~ 98 (100)
.+.|++|+|.
T Consensus 246 ~~~g~~l~v~ 255 (509)
T TIGR01642 246 IYSNVFLKIR 255 (509)
T ss_pred EeeCceeEec
Confidence 9999999985
No 66
>KOG4212|consensus
Probab=98.94 E-value=2.4e-09 Score=76.62 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=60.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhh-ccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFS-SVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
...+.+||.|+|+++.+.+|+++|. +.|+|+.|.+..|. .|++|| .|+|+++ +.||.+.+.||+|+|-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3444599999999999999999996 68999999999997 489999 9999998 8999999999999873
No 67
>KOG0151|consensus
Probab=98.94 E-value=3.2e-09 Score=79.39 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=63.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC-----CCCCeeeEEEeCCC-------CccCCceeCCeee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK-----TTGELSVVANSIFA-------PELNGLHSQTERS 95 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~-----~tg~~~GfV~f~~~-------~~lng~~l~g~~i 95 (100)
.+...++|||+||++.++++.|...|..||+|.+++|+..+ ...+.+|||-|-++ +.|+|..+.++.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 36677899999999999999999999999999999998755 23566779999887 8999999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
++-|
T Consensus 250 K~gW 253 (877)
T KOG0151|consen 250 KLGW 253 (877)
T ss_pred eecc
Confidence 9876
No 68
>KOG0144|consensus
Probab=98.93 E-value=1.1e-09 Score=77.95 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.+..+.+++||.+||.+.-+.+|-..|.+||.|.+.++..|+.|+-+++ ||.|++. ..|||..++.++++|
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 4556677899999999999999999999999999999999999998887 9999998 899999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 499 Ql 500 (510)
T KOG0144|consen 499 QL 500 (510)
T ss_pred Ee
Confidence 75
No 69
>KOG0533|consensus
Probab=98.89 E-value=4.8e-09 Score=70.49 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=62.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.+...++|+|.|||+.+.++||+++|..||.++.+.+.+|+. |++.| -|.|... +.++|..++|++|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 344457899999999999999999999999999999999885 88888 7888776 8999999999999986
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 158 ~ 158 (243)
T KOG0533|consen 158 I 158 (243)
T ss_pred E
Confidence 4
No 70
>KOG0110|consensus
Probab=98.87 E-value=1.2e-09 Score=81.43 Aligned_cols=70 Identities=20% Similarity=0.315 Sum_probs=62.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|+|.|||+..+-.+++.+|..||.+.+|+|+.....+.++| ||+|-++ .+|.++.|.||+|.+.|
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 3367999999999999999999999999999999998756677787 9999997 77779999999999877
No 71
>KOG4209|consensus
Probab=98.87 E-value=2.8e-09 Score=71.41 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
........+||+|+.+.++.++++..|+.||.+..+.++.|+.++.++| ||+|.+. ..|||..|.|+.|+|+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 4456677899999999999999999999999999999999999998999 9999887 5599999999999998
Q ss_pred eC
Q psy13318 99 MF 100 (100)
Q Consensus 99 ~~ 100 (100)
+|
T Consensus 176 ~~ 177 (231)
T KOG4209|consen 176 LK 177 (231)
T ss_pred ee
Confidence 75
No 72
>KOG0132|consensus
Probab=98.87 E-value=2.5e-09 Score=80.48 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=56.9
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++||||.|+..+++.||..+|+.||+|.+|.++-.+ .++||.+..+ ..|+...+.++.|+|.|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 5789999999999999999999999999999887632 3339999887 88889999999999998
No 73
>KOG4205|consensus
Probab=98.87 E-value=8.7e-09 Score=71.57 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=58.3
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
..+|||+.||.+++++++++.|.+||.|..+.++.|..+.+++| ||+|.++ ....-+.|.|+.+.|-
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEe
Confidence 55899999999999999999999999999999999999999999 9999887 4444566777776664
No 74
>KOG1548|consensus
Probab=98.86 E-value=2.3e-08 Score=69.62 Aligned_cols=71 Identities=24% Similarity=0.302 Sum_probs=61.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE--------EEEeecCCCCCeee--EEEeCCC-------CccCCce
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES--------CKLIRDKTTGELSV--VANSIFA-------PELNGLH 89 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~--------~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~ 89 (100)
......++|||+|||.++|.+++.++|++||-|.+ |++.++.. |..+| .+.|... ..|++..
T Consensus 129 ~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 129 PEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred cccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccc
Confidence 34566788999999999999999999999998765 78888876 88999 7777555 8999999
Q ss_pred eCCeeeEEE
Q psy13318 90 SQTERSRKS 98 (100)
Q Consensus 90 l~g~~i~V~ 98 (100)
+.|+.|+|.
T Consensus 208 ~rg~~~rVe 216 (382)
T KOG1548|consen 208 LRGKKLRVE 216 (382)
T ss_pred ccCcEEEEe
Confidence 999999986
No 75
>KOG4661|consensus
Probab=98.85 E-value=8.5e-09 Score=75.98 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=60.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC--CCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT--GELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t--g~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
......+|||++|+..+...+|+.+|++||.|.-++++.+..+ -+++|||++.+. ..|+.+.|+||.|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 3445678999999999999999999999999999999988765 244559999887 7888899999999874
No 76
>KOG0123|consensus
Probab=98.71 E-value=2.5e-08 Score=70.87 Aligned_cols=61 Identities=23% Similarity=0.125 Sum_probs=56.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..|||| +++++..|.++|+++|.+.++++.+|. | +-| ||.|.++ ..+|-..+.|++|+|-|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~ 71 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMW 71 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeeh
Confidence 468999 999999999999999999999999999 7 555 9999998 89999999999999977
No 77
>KOG0116|consensus
Probab=98.68 E-value=1.1e-07 Score=68.43 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=52.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCC--eeeEEEeCCC------CccCCceeCCeeeEEE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE--LSVVANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~--~~GfV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
....|||.|||+++++++|++.|..||.|+...|..-...++ +.|||+|++. ..-+-..+++++|.|.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVE 362 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEE
Confidence 344599999999999999999999999999987765332222 5559999887 3333567788888774
No 78
>KOG4454|consensus
Probab=98.64 E-value=1.3e-08 Score=67.18 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=62.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+...+|||+|+...++|+-|.++|-+.|.|..+.|..++. +..+- ||.|+++ ..+||..+.+++|+|.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCceeeeecccccchhhhhhhcccchhccchhhccc
Confidence 345567999999999999999999999999999999888775 44444 9999998 88999999999999876
Q ss_pred C
Q psy13318 100 F 100 (100)
Q Consensus 100 ~ 100 (100)
+
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 4
No 79
>KOG4660|consensus
Probab=98.55 E-value=2.2e-08 Score=73.00 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=54.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
+-...+|+|-|||..+++++|+.+|+.||+|++++.-. ..+| ||+|.+. ++|++..+.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 55677899999999999999999999999999976544 3456 9999887 88999999988876
No 80
>KOG0110|consensus
Probab=98.55 E-value=1.3e-07 Score=70.73 Aligned_cols=69 Identities=22% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCC---Ceee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG---ELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg---~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
..++|||.||+++++.++|..+|...|.|.++.|...+... .+.| ||+|.+. +.|+|+.|+|+.|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999887765421 1235 9999998 8999999999999887
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 594 ~ 594 (725)
T KOG0110|consen 594 I 594 (725)
T ss_pred e
Confidence 5
No 81
>KOG0226|consensus
Probab=98.48 E-value=1.6e-07 Score=63.17 Aligned_cols=72 Identities=18% Similarity=0.221 Sum_probs=66.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
..-+....+||.|.|.-+++++-|...|.+|-.....++++|+.||+++| ||.|.+. .+|||..++.|+|+
T Consensus 184 ~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpik 263 (290)
T KOG0226|consen 184 AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIK 263 (290)
T ss_pred ccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhH
Confidence 45567788999999999999999999999999888999999999999999 9999998 99999999999986
Q ss_pred E
Q psy13318 97 K 97 (100)
Q Consensus 97 V 97 (100)
+
T Consensus 264 l 264 (290)
T KOG0226|consen 264 L 264 (290)
T ss_pred h
Confidence 4
No 82
>KOG0146|consensus
Probab=98.47 E-value=1.7e-07 Score=63.80 Aligned_cols=51 Identities=20% Similarity=0.445 Sum_probs=47.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+.++||||-|...-.|+|++.+|..||.|.+|.+.+.+. |.++| ||.|.+.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~ 70 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSH 70 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccc
Confidence 567999999999999999999999999999999998774 88899 9999886
No 83
>KOG0106|consensus
Probab=98.38 E-value=5.7e-07 Score=59.55 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=52.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+||+.+.+.+|+.+|..||.+.++.+.. ..|||+|++. ..+|+..|.|.++.|.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~ 69 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEH 69 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeec
Confidence 4799999999999999999999999999987643 1239999987 88999999988866654
No 84
>KOG1995|consensus
Probab=98.37 E-value=8.8e-07 Score=61.94 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE--------EEEeecCCCCCeee--EEEeCCC-------CccCCce
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES--------CKLIRDKTTGELSV--VANSIFA-------PELNGLH 89 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~--------~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~ 89 (100)
.......+|||-+||..++++++.+.|.++|.|.. +.|-.|+.|++.+| -|+|++. ..+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34566678999999999999999999999998864 67888999999999 9999987 8889999
Q ss_pred eCCeeeEEEe
Q psy13318 90 SQTERSRKSM 99 (100)
Q Consensus 90 l~g~~i~V~~ 99 (100)
+.+..|+|++
T Consensus 141 f~gn~ikvs~ 150 (351)
T KOG1995|consen 141 FCGNTIKVSL 150 (351)
T ss_pred ccCCCchhhh
Confidence 9999999875
No 85
>KOG0120|consensus
Probab=98.30 E-value=2.1e-06 Score=62.90 Aligned_cols=72 Identities=22% Similarity=0.370 Sum_probs=65.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.......++||++||...++.++.++...||.+....++.|..+|.++| |.+|.+. ..|||..++++.|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 3455567899999999999999999999999999999999999999999 8888887 899999999999987
Q ss_pred E
Q psy13318 98 S 98 (100)
Q Consensus 98 ~ 98 (100)
.
T Consensus 364 q 364 (500)
T KOG0120|consen 364 Q 364 (500)
T ss_pred e
Confidence 5
No 86
>KOG1190|consensus
Probab=98.26 E-value=4.4e-06 Score=59.68 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=56.3
Q ss_pred CceEEEcCC-CCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYL-PQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nL-p~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...|.|.|| +..+|.+-|..+|+-||.|.+|+|..++... ..|.|.+. ..|+|..|.||+|+|++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~---ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~ 369 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDN---ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTL 369 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcc---eeeeecchhHHHHHHHHhhcceecCceEEEee
Confidence 567899998 4578889999999999999999999876422 29999987 89999999999999985
No 87
>KOG0147|consensus
Probab=98.25 E-value=2.9e-07 Score=67.29 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=64.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
+.....++|+-.|+..++..+|.++|+.+|.|..|.++.|+.+++++| ||+|.+. ..|.|..+.|-+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 344566889999999999999999999999999999999999999999 9999987 8899999999998875
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.15 E-value=1.3e-05 Score=47.10 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=51.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhcc--CcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSV--GEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ 91 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~--G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~ 91 (100)
+|+|.+.|+|...+.++|.+++... |...-+.++.|..++.+.| ||.|.++ ..++|..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4789999999999999999887643 5667788999999999999 9999987 777777774
No 89
>KOG1457|consensus
Probab=98.13 E-value=4.1e-05 Score=51.11 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=53.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCC---eeeEEEeCCC-------CccCCceeC---Cee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE---LSVVANSIFA-------PELNGLHSQ---TER 94 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~---~~GfV~f~~~-------~~lng~~l~---g~~ 94 (100)
+...-++|||++||.++...+|..+|..|-.-+.+.+......++ .-|||+|.+. ..|||..++ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 344567999999999999999999999997777666655333222 2239999987 899998885 555
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.+
T Consensus 110 LhiEl 114 (284)
T KOG1457|consen 110 LHIEL 114 (284)
T ss_pred eEeee
Confidence 66543
No 90
>KOG4211|consensus
Probab=98.00 E-value=1.5e-05 Score=57.98 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V 97 (100)
.....-|-+.+|||++|++||.++|+.++ |..+.+ .+.+|+..| ||+|.+. .+.+...+..|.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~--~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEI--PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEE--eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 34445677789999999999999999994 666544 445689999 9999988 666677777777776
No 91
>KOG3152|consensus
Probab=97.99 E-value=1.9e-06 Score=58.14 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=52.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC--------CCeee------EEEeCCC-------CccCCcee
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT--------GELSV------VANSIFA-------PELNGLHS 90 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t--------g~~~G------fV~f~~~-------~~lng~~l 90 (100)
.--||++++|+.+.-..|+++|+.||.|-+|.+.....+ |.++. +|+|.+. ..||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 346999999999999999999999999999998877655 33332 7888776 89999999
Q ss_pred CCee
Q psy13318 91 QTER 94 (100)
Q Consensus 91 ~g~~ 94 (100)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9875
No 92
>KOG4206|consensus
Probab=97.63 E-value=0.00059 Score=45.36 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC-------CccCCceeC-CeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA-------PELNGLHSQ-TERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~-------~~lng~~l~-g~~i~V~ 98 (100)
.......+|+.|||..++.+.|..+|.+|...++++++... +-. ||+|.+. ..+.|..+- ...++|.
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 35556689999999999999999999999999999988633 233 9999987 777777775 6667776
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 218 ~ 218 (221)
T KOG4206|consen 218 F 218 (221)
T ss_pred c
Confidence 5
No 93
>KOG4210|consensus
Probab=97.55 E-value=4e-05 Score=52.97 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=55.7
Q ss_pred CceEE-EcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC----CccC--CceeCCeeeEE
Q psy13318 32 KTNLI-VNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA----PELN--GLHSQTERSRK 97 (100)
Q Consensus 32 ~~~l~-V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~----~~ln--g~~l~g~~i~V 97 (100)
..++| |++|++.+++++|+..|..+|.|..+++..++.++.++| ||.|..- .+++ ...+.++++++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRL 258 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCccccc
Confidence 33455 999999999999999999999999999999999999999 9998776 3343 67777777765
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.0002 Score=50.49 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=52.4
Q ss_pred CceEEEcCCCCCCCHHH----H--HHhhhccCcceEEEEeecC----CCCCeee-EEEeCCC-------CccCCceeCCe
Q psy13318 32 KTNLIVNYLPQTMTQEE----M--KSLFSSVGEVESCKLIRDK----TTGELSV-VANSIFA-------PELNGLHSQTE 93 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~----l--~~~F~~~G~v~~~~~~~d~----~tg~~~G-fV~f~~~-------~~lng~~l~g~ 93 (100)
+.-+||-+||+.+..++ | .++|.+||.|..+.+-+.. .+..+.| ||+|.+. .+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44579999998887776 3 4789999999988765433 1123467 9999886 88999999999
Q ss_pred eeEEEe
Q psy13318 94 RSRKSM 99 (100)
Q Consensus 94 ~i~V~~ 99 (100)
.|+.++
T Consensus 194 ~lkatY 199 (480)
T COG5175 194 VLKATY 199 (480)
T ss_pred eEeeec
Confidence 999765
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.48 E-value=0.00026 Score=42.12 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=29.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
+-|.|.+++..++.++|++.|++||.|..|.+.. |...|||.|.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~ 47 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTP 47 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCc
Confidence 4688888999999999999999999999887654 556679999987
No 96
>KOG0106|consensus
Probab=97.25 E-value=0.00061 Score=45.34 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.....+.+.|.+++..+.+.+|...|+++|.+....+. .+.+||+|++. ..|++..+.++.|.+
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 35667789999999999999999999999999554331 23449999887 889999999999876
No 97
>KOG4211|consensus
Probab=97.25 E-value=0.0008 Score=49.23 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=47.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceE-EEEeecCCCCCeee--EEEeCCC----Ccc--CCceeCCeeeEE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVES-CKLIRDKTTGELSV--VANSIFA----PEL--NGLHSQTERSRK 97 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-~~~~~d~~tg~~~G--fV~f~~~----~~l--ng~~l~g~~i~V 97 (100)
..-.|-.++||+.++++||.++|+-.-.+.. +.++.+.. +++.| ||.|++. .+| +...|+.|.|.|
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEv 176 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEV 176 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEe
Confidence 3446778999999999999999997754444 44556554 77888 9999998 333 334566666655
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.16 E-value=0.00093 Score=38.23 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=37.7
Q ss_pred ceEEEcCCCCCCCHHH----HHHhhhccC-cceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEE----MKSLFSSVG-EVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~----l~~~F~~~G-~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+-|||.|||.+.+... |+.++..|| .|.++. ...+.|.|.+. +.|+|..+.|++|.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4689999999998765 667777886 555542 12238999887 89999999999999975
No 99
>KOG0129|consensus
Probab=97.15 E-value=0.0013 Score=48.42 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=50.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhh-ccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFS-SVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
.+.-+..++||||+||.-++.++|..+|+ .||.|..+-|=.|+.-.-++| =|+|.+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnq 423 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQ 423 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeeccc
Confidence 35667788999999999999999999999 899999999988866677778 8999886
No 100
>KOG1457|consensus
Probab=97.05 E-value=0.00039 Score=46.56 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=38.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
...-.+|||.||..+++|++|+.+|+.|-.....+|.. + .|-+-.|++|++.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g~~vaf~~~~~~ 258 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GGMPVAFADFEEI 258 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CCcceEeecHHHH
Confidence 44455899999999999999999999998776666533 1 2322229999875
No 101
>KOG4849|consensus
Probab=97.00 E-value=0.00065 Score=48.17 Aligned_cols=67 Identities=16% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccC--cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVG--EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTER 94 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G--~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~ 94 (100)
....+..+|||||-|++|++||.+.....| .+.++++..++.+|+++| .|...+. +.|--+.|+|..
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 344555789999999999999998887776 567788888999999999 4444433 445555555543
No 102
>KOG1190|consensus
Probab=96.94 E-value=0.00094 Score=48.09 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=42.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
....+-|.++|||++++|++|-.++.+||.|..+.+.. |++..|++|.+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk----GknQAflem~d~ 74 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK----GKNQAFLEMADE 74 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeec----cchhhhhhhcch
Confidence 34566799999999999999999999999999988766 344449998886
No 103
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.87 E-value=0.0034 Score=39.40 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 48 EMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 48 ~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
+|.+.|..||++.-+++.-+.- +|+|.+- ..++|..+.|+.|+|.+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~m------wVTF~dg~sALaals~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTM------WVTFRDGQSALAALSLDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCE------EEEESSCHHHHHHHHGCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCCeE------EEEECccHHHHHHHccCCcEECCEEEEEEe
Confidence 6778899999988887765322 9999987 89999999999999975
No 104
>KOG0120|consensus
Probab=96.82 E-value=0.0027 Score=47.01 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHHhhhccCcceEEEEeec-CCC--CCeee--EEEeCCC-------CccCCceeCCeeeEEEeC
Q psy13318 49 MKSLFSSVGEVESCKLIRD-KTT--GELSV--VANSIFA-------PELNGLHSQTERSRKSMF 100 (100)
Q Consensus 49 l~~~F~~~G~v~~~~~~~d-~~t--g~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~~ 100 (100)
++.-+++||.|..|.+.++ ... ....| ||+|.+. ++|.|.++.+|.+..+++
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 4555778999999999887 221 22334 9999997 999999999999988763
No 105
>KOG2314|consensus
Probab=96.81 E-value=0.0058 Score=45.80 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCCceEEEcCCCCCCCH------HHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC-Ce
Q psy13318 30 ESKTNLIVNYLPQTMTQ------EEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ-TE 93 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~------~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~-g~ 93 (100)
....-|+|-|+|---.. .-|..+|+++|++....++.+..+| .+| |++|.+. +.|||+.|. .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 44567889999864433 2356789999999999999998866 889 9999987 899998885 55
Q ss_pred eeEEEeC
Q psy13318 94 RSRKSMF 100 (100)
Q Consensus 94 ~i~V~~~ 100 (100)
++.|..|
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666544
No 106
>KOG0129|consensus
Probab=96.42 E-value=0.0042 Score=45.81 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=39.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC---CCeee-----EEEeCCC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT---GELSV-----VANSIFA 82 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t---g~~~G-----fV~f~~~ 82 (100)
.......+||||+||++++|+.|...|..||.+. +.++..... -.++| |..|+++
T Consensus 254 ~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E 316 (520)
T KOG0129|consen 254 RSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDE 316 (520)
T ss_pred CccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecch
Confidence 4455567899999999999999999999999865 444421110 12233 8888887
No 107
>KOG4676|consensus
Probab=96.31 E-value=0.012 Score=42.42 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=51.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCC----Ceee-EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG----ELSV-VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg----~~~G-fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
.|-|.||.+.++.+.++.+|.-.|.|.++.|..+...- .++- ||.|.+. +.|-.+.+-++-|-|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 78999999999999999999999999999987644321 2222 9999887 7777777777766553
No 108
>KOG0128|consensus
Probab=96.25 E-value=0.0024 Score=49.50 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=45.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+..++|+|.|+..|.++|+.+++.+|.+.+..++..+. |+++| ||.|.++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~e 787 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTE 787 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCc
Confidence 66899999999999999999999999999998887764 88999 9999887
No 109
>KOG0115|consensus
Probab=96.24 E-value=0.0039 Score=42.44 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=41.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+.|||.||+..++.+.|.+.|+.||+|....+..|.. ++..+ +|.|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKK 82 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcc
Confidence 6899999999999999999999999998876666654 44444 9999876
No 110
>KOG4307|consensus
Probab=96.22 E-value=0.029 Score=43.25 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=53.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcce-EEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVE-SCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~-~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
-|-+.|+|++++-+|+.++|..|-.+. +|.+-++. .|...| .|-|++. ..|++..|..|.+++.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd-~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND-DGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecC-CCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 678899999999999999999996553 45555543 488888 9999987 88999999999988865
No 111
>KOG1996|consensus
Probab=95.91 E-value=0.018 Score=40.13 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHhhhccCcceEEEEeecCCCCCeee---EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 47 EEMKSLFSSVGEVESCKLIRDKTTGELSV---VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 47 ~~l~~~F~~~G~v~~~~~~~d~~tg~~~G---fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++..+..++||.|..|-|...+..-.... ||+|+.. -.|||..++||.++-.+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45677889999999998877764322233 9999987 78999999999887544
No 112
>KOG1456|consensus
Probab=95.83 E-value=0.046 Score=39.38 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCCCCceEEEcCCCCCC-CHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTM-TQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~-~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
......+-+.|-+|.... ..+.|..+|..||.|.++++++.+. ..+.|++.++ ..||+..+-|.+|.|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 344566788899997755 4578999999999999999988553 2239999887 8899999999998875
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
.
T Consensus 359 ~ 359 (494)
T KOG1456|consen 359 V 359 (494)
T ss_pred e
Confidence 3
No 113
>KOG4307|consensus
Probab=95.54 E-value=0.052 Score=41.94 Aligned_cols=71 Identities=18% Similarity=0.048 Sum_probs=51.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE-EEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES-CKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
........|||-.||..+++.++.+.|..--.|++ |.|.+-+ +++.++ ||.|..+ ..-..+.++.|.|+
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34555678999999999999999999998877877 6666655 466666 9999885 22223344566677
Q ss_pred EE
Q psy13318 97 KS 98 (100)
Q Consensus 97 V~ 98 (100)
|.
T Consensus 508 v~ 509 (944)
T KOG4307|consen 508 VD 509 (944)
T ss_pred ee
Confidence 63
No 114
>KOG0128|consensus
Probab=95.07 E-value=0.0036 Score=48.61 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=43.2
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
.++||+||+..+.+.+|...|..+|.+..+.+.-....++.+| |+.|..+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~ 719 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKP 719 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecC
Confidence 4689999999999999999999999888877665556678888 9999876
No 115
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.05 E-value=0.028 Score=36.37 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=35.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhc-cCcc---eEEEEeecC----CCCCeeeEEEeCCC-------CccCCcee
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSS-VGEV---ESCKLIRDK----TTGELSVVANSIFA-------PELNGLHS 90 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~v---~~~~~~~d~----~tg~~~GfV~f~~~-------~~lng~~l 90 (100)
.....+|.|++||+..+++++.+..+. ++.- ..+.-.... ..-.+|.||.|.+. ..++|+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 455679999999999999999997776 5554 233211211 11234459999997 77777665
No 116
>KOG1365|consensus
Probab=95.05 E-value=0.025 Score=40.79 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=42.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCc-ceE--EEEeecCCCCCeee--EEEeCCC
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGE-VES--CKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-v~~--~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
..+--|-.++||+..+.+++..+|..|.. |.- |.++.+.+ |+..| ||+|.++
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~na 334 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNA 334 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhh
Confidence 33556888999999999999999999874 333 67777765 88888 9999887
No 117
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.89 E-value=0.084 Score=27.39 Aligned_cols=45 Identities=18% Similarity=0.161 Sum_probs=30.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
+.|-|.+.+.+..+. +...|..||+|..+.+.. ..+.-||.|.++
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~ 46 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE----STNWMYLKYKSR 46 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC----CCcEEEEEECCH
Confidence 456777877665544 455888999999987652 122228998875
No 118
>KOG0112|consensus
Probab=94.86 E-value=0.011 Score=46.33 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=43.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC-CCCCeeeEEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK-TTGELSVVANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~-~tg~~~GfV~f~~~ 82 (100)
.....+||+|||+..+++.+|+..|..+|.|.+|.|-... .++..++||.|.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~ 423 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNT 423 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhcc
Confidence 3445589999999999999999999999999999876652 33444458888775
No 119
>KOG0112|consensus
Probab=94.71 E-value=0.099 Score=41.29 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCC--eeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQT--ERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g--~~i~V~ 98 (100)
.....+.+|+++|..++....|...|..||.|..|.+- -|.+..||.|++. +.|-|..|++ ++|+|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 56667899999999999999999999999999987542 2555669999887 6677777754 345554
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 527 l 527 (975)
T KOG0112|consen 527 L 527 (975)
T ss_pred c
Confidence 3
No 120
>KOG2416|consensus
Probab=94.58 E-value=0.025 Score=42.74 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=50.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhh-ccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCcee---CCeeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFS-SVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHS---QTERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l---~g~~i~V 97 (100)
......|||.||-.-.|.-.|+.++. .+|.|.+. ++|+- ++.+||.|.+. .+|+|..| +++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI--KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI--KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh--hcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34445789999999999999999999 55666666 45553 56679999887 88999877 4566655
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 517 df 518 (718)
T KOG2416|consen 517 DF 518 (718)
T ss_pred ee
Confidence 43
No 121
>KOG1855|consensus
Probab=94.38 E-value=0.069 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.505 Sum_probs=34.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeec
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD 67 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d 67 (100)
..++|.+-|||.+-.-+-|.++|+.+|.|+.|+|...
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 5678999999999999999999999999999998766
No 122
>KOG2135|consensus
Probab=94.27 E-value=0.052 Score=40.02 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred EEEcCCCCCC-CHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 35 LIVNYLPQTM-TQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 35 l~V~nLp~~~-~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
|-+--.|+.. +.++|...|.+||+|..|.+-... ..+.|+|.+. -...+..|++|.|||.|
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFW 442 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEE
Confidence 3333344544 458999999999999999876542 2348888876 56778899999999988
No 123
>KOG1548|consensus
Probab=94.00 E-value=0.14 Score=36.51 Aligned_cols=69 Identities=10% Similarity=0.129 Sum_probs=51.2
Q ss_pred CCCCCCceEEEcCCC----CCCC-------HHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccC
Q psy13318 27 SNEESKTNLIVNYLP----QTMT-------QEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELN 86 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp----~~~~-------~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~ln 86 (100)
......++|.+.|+= +..+ .++|++-.++||.|.++.+.- + .+.| -|.|.+. +.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d-~---hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD-R---HPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec-c---CCCceeEEEeCChHHHHHHHHHhc
Confidence 445556788999872 1222 256677789999999987653 2 3567 6999998 9999
Q ss_pred CceeCCeeeEEEe
Q psy13318 87 GLHSQTERSRKSM 99 (100)
Q Consensus 87 g~~l~g~~i~V~~ 99 (100)
|..+.||.|.-++
T Consensus 336 GR~fdgRql~A~i 348 (382)
T KOG1548|consen 336 GRWFDGRQLTASI 348 (382)
T ss_pred CeeecceEEEEEE
Confidence 9999999998664
No 124
>KOG0105|consensus
Probab=93.85 E-value=0.39 Score=31.67 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=37.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~ 68 (100)
++......++.|++||.+.+++||++...+-|.|....+.+|.
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 3556667799999999999999999999999999888877764
No 125
>KOG1456|consensus
Probab=93.56 E-value=0.62 Score=33.81 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=38.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.....--+.|++|-..++|.+|.+..+.||.|..+.++..+ ....|+|++.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi 77 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDI 77 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccc
Confidence 34444568999999999999999999999999988765422 1127777754
No 126
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.43 E-value=0.37 Score=28.42 Aligned_cols=63 Identities=16% Similarity=0.061 Sum_probs=37.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEE-EeecCC-----CCCeee---EEEeCCC------CccCCceeCCeee
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCK-LIRDKT-----TGELSV---VANSIFA------PELNGLHSQTERS 95 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~-~~~d~~-----tg~~~G---fV~f~~~------~~lng~~l~g~~i 95 (100)
.+-|.|=+.|+. ....+.+.|++||.|.+.. +..+.. .....+ .|+|.++ ..-||..+.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 345677678877 5566777899999998764 111100 011112 8899998 7889999988765
No 127
>KOG1365|consensus
Probab=92.34 E-value=0.8 Score=33.37 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=37.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhcc----CcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSV----GEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~----G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
..-.|-.++||++.++.++.++|.+- |..+.+-.+..+ .|+..| ||.|..+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACE 216 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCH
Confidence 34456778999999999999999632 233445444433 588888 9999887
No 128
>KOG2591|consensus
Probab=92.34 E-value=0.32 Score=36.83 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=38.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhc--cCcceEEEEeecCCCCCeee-EEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSS--VGEVESCKLIRDKTTGELSV-VANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~--~G~v~~~~~~~d~~tg~~~G-fV~f~~~ 82 (100)
..+++.+.++-||..+.+++++.||+. |-.+.+|....+ -+ ||+|++.
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------~nWyITfesd 222 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------DNWYITFESD 222 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------CceEEEeecc
Confidence 445667888999999999999999974 677888876553 35 9999987
No 129
>KOG2068|consensus
Probab=91.85 E-value=0.028 Score=39.59 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=46.5
Q ss_pred ceEEEcCCCCCCCHHHH-H--HhhhccCcceEEEEeecCC--C--CCeee-EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 33 TNLIVNYLPQTMTQEEM-K--SLFSSVGEVESCKLIRDKT--T--GELSV-VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l-~--~~F~~~G~v~~~~~~~d~~--t--g~~~G-fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.-+||-+|+.....+.+ + +.|.+||.|..+.+..++. . +.... ||+|+.. ...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788889877766554 3 5799999999998888762 1 22222 9999885 677777777777654
Q ss_pred E
Q psy13318 98 S 98 (100)
Q Consensus 98 ~ 98 (100)
+
T Consensus 158 ~ 158 (327)
T KOG2068|consen 158 S 158 (327)
T ss_pred h
Confidence 3
No 130
>KOG2193|consensus
Probab=91.60 E-value=0.12 Score=37.92 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=40.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCC-ceeCCeeeEEE
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNG-LHSQTERSRKS 98 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng-~~l~g~~i~V~ 98 (100)
.++|++||.+.++..+|+.+|...-.-..-.++. ..| ||.+.+. +.++| ..+.|+++.|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 3789999999999999999987541111111111 123 8888776 67777 47788888764
No 131
>KOG2253|consensus
Probab=90.35 E-value=0.26 Score=37.74 Aligned_cols=50 Identities=18% Similarity=0.096 Sum_probs=41.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.+.....-++||+|+...+..+-++.+...+|-|.++.... .||..|...
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~ 83 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKH 83 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhH
Confidence 45566677999999999999999999999999998876443 468888776
No 132
>KOG2202|consensus
Probab=89.63 E-value=0.077 Score=36.21 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=36.4
Q ss_pred HHHHhhh-ccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 48 EMKSLFS-SVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 48 ~l~~~F~-~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
++...|+ +||+|+++.+..+-. -.-.| ||.|... ..||+..+.|++|...
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae 143 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAE 143 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceee
Confidence 3444444 899999987655432 23456 9999887 8999999999998754
No 133
>KOG4410|consensus
Probab=86.78 E-value=5.1 Score=28.28 Aligned_cols=52 Identities=12% Similarity=-0.005 Sum_probs=35.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcc-eEEEEeecCCCCCeeeEEEeCCC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEV-ESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v-~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
......+-||++|||.++.-.||+..+.+-+.+ .++.+ .....++|..|.+.
T Consensus 325 ~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 325 VEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred ccCccccceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCc
Confidence 344556679999999999999999888877643 23322 11122239999876
No 134
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=85.13 E-value=0.96 Score=25.94 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=27.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.+|--..|..-...||.++|+.||.|. |.++.|. ..||...++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r 52 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNR 52 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCC
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecH
Confidence 444444999999999999999999875 5555443 138877765
No 135
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.38 E-value=6.7 Score=23.46 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=39.2
Q ss_pred CCceEEE-cCCCCCCCHHHHHHhhhccC-cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC
Q psy13318 31 SKTNLIV-NYLPQTMTQEEMKSLFSSVG-EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ 91 (100)
Q Consensus 31 ~~~~l~V-~nLp~~~~~~~l~~~F~~~G-~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~ 91 (100)
..+.+.+ ...|..++.++|..+.+.+- .|..++|++|.. .++- .+.|.+. ..+||+.+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344444 55566666677777666664 467789998765 2334 8899887 778887664
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.78 E-value=5.3 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=34.0
Q ss_pred HHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccC--CceeCCeeeEEEe
Q psy13318 46 QEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELN--GLHSQTERSRKSM 99 (100)
Q Consensus 46 ~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~ln--g~~l~g~~i~V~~ 99 (100)
.+.|+++|..++.+.+...+.. -.|=.|.|.+. ..|+ +..+.|..++|-+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf 67 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYF 67 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE-
T ss_pred HHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEE
Confidence 4789999999999888765541 11228888887 7777 8999999998753
No 137
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.54 E-value=7.2 Score=21.45 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=34.2
Q ss_pred HHHHHhhhccC-cceEEEEeecCCCCCeee--EEEeCCC----CccCCceeCCeeeEEE
Q psy13318 47 EEMKSLFSSVG-EVESCKLIRDKTTGELSV--VANSIFA----PELNGLHSQTERSRKS 98 (100)
Q Consensus 47 ~~l~~~F~~~G-~v~~~~~~~d~~tg~~~G--fV~f~~~----~~lng~~l~g~~i~V~ 98 (100)
+++.+-|...| ++..+..+..+.++.+.- +|+.... +.++=..|.|+++.|.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~ik~Lg~~~V~VE 60 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILNIKTLGGQRVTVE 60 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEeehhhCCeeEEEe
Confidence 35666677777 577777777665443333 7777665 6666677788887764
No 138
>KOG4285|consensus
Probab=79.91 E-value=15 Score=26.11 Aligned_cols=51 Identities=20% Similarity=0.027 Sum_probs=34.1
Q ss_pred EcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee---EEEeCCC------CccCCceeCCeee
Q psy13318 37 VNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV---VANSIFA------PELNGLHSQTERS 95 (100)
Q Consensus 37 V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G---fV~f~~~------~~lng~~l~g~~i 95 (100)
|=+.|+.- -..+..+|++||+|.+.... +.| +|.|.++ ...||+.|+|..+
T Consensus 202 VfGFppg~-~s~vL~~F~~cG~Vvkhv~~-------~ngNwMhirYssr~~A~KALskng~ii~g~vm 261 (350)
T KOG4285|consen 202 VFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVM 261 (350)
T ss_pred EeccCccc-hhHHHHHHHhhCeeeeeecC-------CCCceEEEEecchhHHHHhhhhcCeeeccceE
Confidence 33555543 24566789999999876432 335 8889887 6667788877653
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=78.68 E-value=11 Score=23.94 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCCCCCceEEEcCCCCCCCH-HH---HHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQ-EE---MKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~-~~---l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
..+.+-.+|.|.=|..++.. +| +...++.||+|.++.+ .|+....|.|.+.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGrqsavVvF~d~ 135 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGRQSAVVVFKDI 135 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCCceEEEEehhh
Confidence 44666678888766665544 34 4455788999999864 3555558999886
No 140
>KOG0804|consensus
Probab=76.94 E-value=12 Score=27.92 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=46.8
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhcc-CcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSV-GEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQ 91 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~-G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~ 91 (100)
.+.|.|--+|..++-.||-.+...+ -.|.++++++|....+---.|.|.+. ..+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7789999999999999999988766 46889999997652221128899887 788887764
No 141
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.92 E-value=4 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.368 Sum_probs=33.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~ 68 (100)
.+.|...|+..+++-..+...|.+||+|+++.++.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 4468889999999999999999999999999998776
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=70.35 E-value=14 Score=20.07 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCCCHHHHHHhhhccCc-----ceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 41 PQTMTQEEMKSLFSSVGE-----VESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 41 p~~~~~~~l~~~F~~~G~-----v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
-..++..+|..++..-+. |-.+.+..+- -||+-... ..|++..+.|++++|..
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~------S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNF------SFVEVPEEVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT-HHHHHHHHTT--SSS----EEE
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeE------EEEEECHHHHHHHHHHhcCCCCCCeeEEEEE
Confidence 346677788887776644 3445554321 27777666 88999999999999863
No 143
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.33 E-value=3.4 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhh
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLF 53 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F 53 (100)
....+++|.|.|||....+++|++..
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 45667799999999999999999753
No 144
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.10 E-value=8.7 Score=20.67 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=15.2
Q ss_pred HHHHHhhhccCcceEEEE
Q psy13318 47 EEMKSLFSSVGEVESCKL 64 (100)
Q Consensus 47 ~~l~~~F~~~G~v~~~~~ 64 (100)
++|++.|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999887654
No 145
>KOG4210|consensus
Probab=62.76 E-value=3.7 Score=28.64 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=44.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
...+++|++++.+.+.+.+...++..+|....+.+........++| ++.|...
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~k 140 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGK 140 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccH
Confidence 4567899999999999998999999999888887777666677777 8888776
No 146
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.65 E-value=24 Score=19.10 Aligned_cols=52 Identities=13% Similarity=0.036 Sum_probs=33.0
Q ss_pred HHHHHhhhccC-cceEEEEeecCCCCCeee--EEEeCCC----CccCCceeCCeeeEEE
Q psy13318 47 EEMKSLFSSVG-EVESCKLIRDKTTGELSV--VANSIFA----PELNGLHSQTERSRKS 98 (100)
Q Consensus 47 ~~l~~~F~~~G-~v~~~~~~~d~~tg~~~G--fV~f~~~----~~lng~~l~g~~i~V~ 98 (100)
+++.+-|...| .|..+.-+..+.+....- ||+.+.. ..++=..+.+..++|.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~Ik~l~~~~V~vE 60 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKIKTLCGQRVKVE 60 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeehHhhCCeEEEEe
Confidence 34556666666 577776666654444434 8887765 5566667778877775
No 147
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=59.01 E-value=27 Score=18.73 Aligned_cols=37 Identities=14% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhcc---CcceEEEEeecC
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSV---GEVESCKLIRDK 68 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~---G~v~~~~~~~d~ 68 (100)
..-+|+|.++. +.+.++++.+|..| ....++.++-|.
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt 43 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT 43 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC
Confidence 34589999994 58888999999988 234577777664
No 148
>KOG4454|consensus
Probab=57.49 E-value=2.4 Score=28.71 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=42.7
Q ss_pred CCCCCCceEEEcC----CCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCC
Q psy13318 27 SNEESKTNLIVNY----LPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIF 81 (100)
Q Consensus 27 ~~~~~~~~l~V~n----Lp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~ 81 (100)
..++...+++.|+ |...++++.+...|+.-|.+..+++..+.. |+++- |+++..
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQR 134 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhh
Confidence 3456677888898 888999999999999999999999888775 55443 776643
No 149
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=55.95 E-value=25 Score=24.28 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=26.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLI 65 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~ 65 (100)
.....|+|||+.++..-+..++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4467899999999999999998876555454443
No 150
>KOG4008|consensus
Probab=54.78 E-value=14 Score=25.37 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=30.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESC 62 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~ 62 (100)
........+|+-|+|...+++.|..+.+++|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345556689999999999999999999999866554
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=52.63 E-value=37 Score=18.38 Aligned_cols=47 Identities=15% Similarity=-0.013 Sum_probs=33.0
Q ss_pred CCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 43 TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 43 ~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.++-++++..+..|+- .+|..|+ .| ||.|.+. ...+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999963 2234443 37 9999887 667777777766553
No 152
>KOG2891|consensus
Probab=51.92 E-value=16 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=27.1
Q ss_pred CCCCceEEEcCCCC------------CCCHHHHHHhhhccCcceEEEEe
Q psy13318 29 EESKTNLIVNYLPQ------------TMTQEEMKSLFSSVGEVESCKLI 65 (100)
Q Consensus 29 ~~~~~~l~V~nLp~------------~~~~~~l~~~F~~~G~v~~~~~~ 65 (100)
.+.+-+||..+||- -.+++-|+..|+.||+|..|.|+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34444667666653 35678899999999999988775
No 153
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=51.70 E-value=12 Score=17.85 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=10.0
Q ss_pred CCCCHHHHHHhhhccC
Q psy13318 42 QTMTQEEMKSLFSSVG 57 (100)
Q Consensus 42 ~~~~~~~l~~~F~~~G 57 (100)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4678899999998754
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=50.79 E-value=39 Score=21.68 Aligned_cols=43 Identities=33% Similarity=0.420 Sum_probs=35.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~ 68 (100)
.........+++++++..+...++...|..+|.+....+....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3456667789999999999999999999999999776665544
No 155
>KOG4676|consensus
Probab=50.65 E-value=3 Score=30.55 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=31.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEee
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~ 66 (100)
..+++|++|+......++.+.|..+|+|....+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as 185 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS 185 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc
Confidence 45799999999999999999999999999877654
No 156
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=46.68 E-value=24 Score=24.00 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhh--ccCcceEEEE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFS--SVGEVESCKL 64 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~--~~G~v~~~~~ 64 (100)
...-+.|+|||+.++..-|..++. .+|.+.-+-+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~ 131 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLM 131 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccceEEE
Confidence 355789999999999999988876 5555444433
No 157
>PHA01632 hypothetical protein
Probab=46.31 E-value=24 Score=18.61 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=15.9
Q ss_pred EEcCCCCCCCHHHHHHhhhc
Q psy13318 36 IVNYLPQTMTQEEMKSLFSS 55 (100)
Q Consensus 36 ~V~nLp~~~~~~~l~~~F~~ 55 (100)
.|-.+|...|+++|+..+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34689999999999877554
No 158
>KOG4365|consensus
Probab=45.36 E-value=4.3 Score=30.27 Aligned_cols=50 Identities=4% Similarity=-0.185 Sum_probs=35.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
++.|+..+|..+.++++.-+|..||.|..+.+.+-.+.|...- ||+-...
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~ 55 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA 55 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc
Confidence 3566778899999999999999999998877655444333222 6655443
No 159
>KOG2318|consensus
Probab=44.06 E-value=46 Score=25.88 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=30.8
Q ss_pred CCCCCCceEEEcCCCCCC-CHHHHHHhhhcc----CcceEEEEee
Q psy13318 27 SNEESKTNLIVNYLPQTM-TQEEMKSLFSSV----GEVESCKLIR 66 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~-~~~~l~~~F~~~----G~v~~~~~~~ 66 (100)
.......+|-|-|+.|+. ...+|.-+|..| |.|.+|.|..
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp 213 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP 213 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech
Confidence 335667799999999964 558898888766 5888988754
No 160
>PF14893 PNMA: PNMA
Probab=44.03 E-value=26 Score=25.09 Aligned_cols=53 Identities=11% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhh----hccCcceEEEEeecCCCCCeee-EEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLF----SSVGEVESCKLIRDKTTGELSV-VANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F----~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~ 82 (100)
-+..+.|.|.++|.+++++++++.+ .+.|...-..-++.+. -..+. +|+|...
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~ 72 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAED 72 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeecccc
Confidence 3456689999999999999887764 3445432211111122 12344 8888765
No 161
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=39.71 E-value=80 Score=18.54 Aligned_cols=50 Identities=8% Similarity=-0.037 Sum_probs=28.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+...-+|||+++..+.+.--..+-+.++.- ++-++.... ...| |-++...
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~~--~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWATN--TESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcCC--CCCCcEEEecCCC
Confidence 345679999998888876555555555442 333333221 2226 6666554
No 162
>KOG4660|consensus
Probab=39.32 E-value=31 Score=26.39 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=38.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhc----------------------------cCcceEEEEeecCCCCCeee--EEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSS----------------------------VGEVESCKLIRDKTTGELSV--VAN 78 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~----------------------------~G~v~~~~~~~d~~tg~~~G--fV~ 78 (100)
.+..+++-|+|+|..-...+|..+... .|.-.-+.++.|-.+....| ||.
T Consensus 358 ~~~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFIN 437 (549)
T KOG4660|consen 358 RDRRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFIN 437 (549)
T ss_pred ccchhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEe
Confidence 445566777777766666666555431 23333355666655555556 888
Q ss_pred eCCC-------CccCCcee
Q psy13318 79 SIFA-------PELNGLHS 90 (100)
Q Consensus 79 f~~~-------~~lng~~l 90 (100)
|.++ +++||+.+
T Consensus 438 m~sp~ai~~F~kAFnGk~W 456 (549)
T KOG4660|consen 438 MTSPEAIIRFYKAFNGKKW 456 (549)
T ss_pred ecCHHHHHHHHHHHcCCch
Confidence 8877 77777655
No 163
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=36.58 E-value=58 Score=17.61 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=23.0
Q ss_pred CCHHHHHHhhhccCcceEEEEeecCCCCCeeeEE
Q psy13318 44 MTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVA 77 (100)
Q Consensus 44 ~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV 77 (100)
.-+.+|...|-+--+|.++.+...+.-++..|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3455678888888889999887766433333366
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=36.37 E-value=62 Score=22.10 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=22.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLI 65 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~ 65 (100)
-+.|+|+|+.++..-|..+......+..+.++
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~ 138 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVM 138 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEE
Confidence 57899999999998888887542224444443
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=35.40 E-value=58 Score=22.77 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=22.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEE
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKL 64 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~ 64 (100)
.+.|+|||+.++...+..++.....+....+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vl 133 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVL 133 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeee
Confidence 4788999999999999888865334444433
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=34.12 E-value=66 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=20.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCc
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGE 58 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~ 58 (100)
-+.|+|+|+.++..-+..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4789999999999999999865543
No 167
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.22 E-value=98 Score=17.67 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANS 79 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f 79 (100)
+...-+|||+++..+.|.--..+.+..+.-.-+-+..+. + ..| |-+.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEe
Confidence 345579999999998887666665554443333333322 2 344 6666
No 168
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=32.92 E-value=49 Score=18.99 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=17.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhc
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSS 55 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~ 55 (100)
+...-+|||+++..+.+.--..+-+.
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~ 48 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQH 48 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHh
Confidence 34567999999988877544443333
No 169
>COG5584 Predicted small secreted protein [Function unknown]
Probab=30.42 E-value=95 Score=18.32 Aligned_cols=32 Identities=6% Similarity=0.161 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHhhhccCcceEEEEeecCCC
Q psy13318 39 YLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70 (100)
Q Consensus 39 nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t 70 (100)
|++....-.-+++.|+++|.|+--.+...|..
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 44555555667889999999998888776654
No 170
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=30.31 E-value=1.1e+02 Score=18.97 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=19.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhcc
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSV 56 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~ 56 (100)
.-+.++|+|+.++.+.+..++...
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcC
Confidence 457789999999988888887643
No 171
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=30.05 E-value=78 Score=15.53 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCc
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGE 58 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~ 58 (100)
..+++.+.......++|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46777777667888999999999886
No 172
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.78 E-value=1.1e+02 Score=18.43 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=20.5
Q ss_pred CHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC
Q psy13318 45 TQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA 82 (100)
Q Consensus 45 ~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~ 82 (100)
+.++|++.|..|..++ ++.+.++. -+.| .|.|...
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKD 66 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SS
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCC
Confidence 4578999999998765 55556554 4556 8899775
No 173
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=27.59 E-value=1.1e+02 Score=17.57 Aligned_cols=30 Identities=13% Similarity=0.122 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCCHHHHHH---hhhccCcceEEE
Q psy13318 34 NLIVNYLPQTMTQEEMKS---LFSSVGEVESCK 63 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~---~F~~~G~v~~~~ 63 (100)
..|+.+||..+.+.++.. .+..+..-..+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~ 44 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIE 44 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEE
Confidence 458899999999977654 454554333333
No 174
>PHA02531 20 portal vertex protein; Provisional
Probab=26.60 E-value=55 Score=24.92 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=31.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV 75 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G 75 (100)
-|=|||||..-.++.|+++..+| .-+++.|..||.-++
T Consensus 283 YiDVGNlPk~KAeqYlr~vm~~y----kNklvYDa~TGeird 320 (514)
T PHA02531 283 YIDVGNLPKRKAEEYLNNVMQRY----KNRVVYDANTGKVKN 320 (514)
T ss_pred EEEcCCCChhhHHHHHHHHHHHh----hhhEEEeCCCCeecC
Confidence 34569999999999999999988 456788888887766
No 175
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=24.27 E-value=68 Score=24.39 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=33.0
Q ss_pred EEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee---EEEe
Q psy13318 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV---VANS 79 (100)
Q Consensus 35 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G---fV~f 79 (100)
|=|||||..-.++.|+++..+| +-+++.|..||.-+. |..+
T Consensus 281 IDvGnlpk~KAeqyl~~iM~k~----knklvYDa~TGevrddr~~msM 324 (501)
T PF07230_consen 281 IDVGNLPKQKAEQYLRDIMNKY----KNKLVYDASTGEVRDDRKFMSM 324 (501)
T ss_pred EECCCCChHhHHHHHHHHHHHh----cceeeecCCCCeecCCcccchH
Confidence 4469999999999999999988 567788888887665 5544
No 176
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=24.10 E-value=95 Score=18.71 Aligned_cols=19 Identities=11% Similarity=0.462 Sum_probs=15.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhh
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFS 54 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~ 54 (100)
..||+|+.+ ++++|.+.|.
T Consensus 2 VsiWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 2 VSIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred eEEEEecCC---CHHHHHHHhC
Confidence 479999875 8899998885
No 177
>PF15063 TC1: Thyroid cancer protein 1
Probab=24.05 E-value=73 Score=17.90 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcc
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEV 59 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v 59 (100)
...++--+.|+=.++....|+.+|..-|..
T Consensus 23 t~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 23 TASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 344455678888999999999999999864
No 178
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=23.43 E-value=1.1e+02 Score=19.62 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHhhh-ccCcceEEEEeecCCCCCeee-EEEe
Q psy13318 39 YLPQTMTQEEMKSLFS-SVGEVESCKLIRDKTTGELSV-VANS 79 (100)
Q Consensus 39 nLp~~~~~~~l~~~F~-~~G~v~~~~~~~d~~tg~~~G-fV~f 79 (100)
-||++++-.+|.++-. -++.-..+++......|+.++ .+-|
T Consensus 118 ~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~k~i~~y~ 160 (163)
T PF09445_consen 118 FLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGKLKAITAYF 160 (163)
T ss_dssp EEETTB-HHHHHHT----T-TTEEEEEEEEEETTEEEEEEEEE
T ss_pred EeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCeeEEEEEEE
Confidence 4899999999988743 345556666666666677887 5544
No 179
>KOG3432|consensus
Probab=20.88 E-value=1.1e+02 Score=18.52 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHhhhccCcceEEEEe
Q psy13318 41 PQTMTQEEMKSLFSSVGEVESCKLI 65 (100)
Q Consensus 41 p~~~~~~~l~~~F~~~G~v~~~~~~ 65 (100)
...++.++|++.|..|-.-.++.++
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEEE
Confidence 4589999999999999775555554
No 180
>PF09671 Spore_GerQ: Spore coat protein (Spore_GerQ); InterPro: IPR014099 Members of this protein family are the spore coat protein GerQ of endospore-forming Firmicutes (low GC Gram-positive bacteria). This protein is cross-linked by a spore coat-associated transglutaminase.
Probab=20.82 E-value=1.4e+02 Score=16.82 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=12.8
Q ss_pred EEeecCCCCCeee-------EEEeCC
Q psy13318 63 KLIRDKTTGELSV-------VANSIF 81 (100)
Q Consensus 63 ~~~~d~~tg~~~G-------fV~f~~ 81 (100)
-++.|+.||+..= ||+|..
T Consensus 51 iiisDp~tg~ryLllmvylDyv~Fde 76 (81)
T PF09671_consen 51 IIISDPKTGKRYLLLMVYLDYVTFDE 76 (81)
T ss_pred EEEeCCCCCcEEEEEEEeeeeEEecc
Confidence 4678888886553 666654
No 181
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=20.78 E-value=66 Score=17.28 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=10.0
Q ss_pred HHHHHHhhhccCcceEE
Q psy13318 46 QEEMKSLFSSVGEVESC 62 (100)
Q Consensus 46 ~~~l~~~F~~~G~v~~~ 62 (100)
--|+.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35788999999987653
No 182
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=20.44 E-value=68 Score=22.74 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=16.7
Q ss_pred CCCHHHHHHhhhccCcceE
Q psy13318 43 TMTQEEMKSLFSSVGEVES 61 (100)
Q Consensus 43 ~~~~~~l~~~F~~~G~v~~ 61 (100)
..++++|..+|..||+...
T Consensus 140 ~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 140 TYSEEDLERILKKYGEEKF 158 (305)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 5789999999999998765
No 183
>smart00457 MACPF membrane-attack complex / perforin.
Probab=20.41 E-value=59 Score=20.96 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=18.8
Q ss_pred EcCCCCCCCHHHHHHhhhccCc
Q psy13318 37 VNYLPQTMTQEEMKSLFSSVGE 58 (100)
Q Consensus 37 V~nLp~~~~~~~l~~~F~~~G~ 58 (100)
+..||......+...+|..||.
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 3478888888999999999995
No 184
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=20.36 E-value=69 Score=22.55 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=16.6
Q ss_pred CCCHHHHHHhhhccCcceE
Q psy13318 43 TMTQEEMKSLFSSVGEVES 61 (100)
Q Consensus 43 ~~~~~~l~~~F~~~G~v~~ 61 (100)
..++++|..+|..||+...
T Consensus 138 ~~~~~~L~~i~~~yGee~~ 156 (296)
T PRK00050 138 TYSEEELARIFKEYGEERF 156 (296)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 5689999999999998765
No 185
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=20.06 E-value=1.6e+02 Score=24.24 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=42.2
Q ss_pred ceEEEcCCCCCCCHHHHHH--hhhccCcceEEEEeecCCCCCeee--EEEeCCC----CccCCceeCCeeeEE
Q psy13318 33 TNLIVNYLPQTMTQEEMKS--LFSSVGEVESCKLIRDKTTGELSV--VANSIFA----PELNGLHSQTERSRK 97 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~--~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~----~~lng~~l~g~~i~V 97 (100)
.+|-+..+..+.+.+.|.. ..+.|++|.++++... +.. +|++..+ .---...+.||.|+|
T Consensus 176 ~~vR~~R~T~ds~s~~l~n~t~~~s~tEiID~k~~YP-----NtAlvgl~vdaeQFgs~~t~~y~~rGrii~V 243 (952)
T COG4733 176 FNIRMRRETADSTSDQLQNKTLWSSYTEIIDVKQCYP-----NTALVGLQVDAEQFGGQPTVNYHIRGRIIQV 243 (952)
T ss_pred ceEEEEEecCCCchhhhhcchhhhhhhheeeccccCC-----CceEEEEEEcHHHhCCcceeEEeecceEEeC
Confidence 6777778888888888864 5789999999887552 223 7777665 233345778888876
Done!