Query psy13318
Match_columns 100
No_of_seqs 206 out of 1261
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 16:26:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 3.4E-22 1.2E-26 116.9 8.1 71 29-99 16-95 (99)
2 2cpz_A CUG triplet repeat RNA- 99.8 1.2E-20 3.9E-25 112.5 10.3 73 27-99 20-101 (115)
3 3s8s_A Histone-lysine N-methyl 99.8 5.4E-21 1.9E-25 113.8 8.5 70 30-99 4-82 (110)
4 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-20 6E-25 107.9 9.0 73 27-99 11-92 (94)
5 2do4_A Squamous cell carcinoma 99.8 5.7E-20 1.9E-24 107.0 9.5 73 26-99 11-92 (100)
6 2cqc_A Arginine/serine-rich sp 99.8 5.2E-20 1.8E-24 106.0 9.2 73 27-99 10-91 (95)
7 2khc_A Testis-specific RNP-typ 99.8 1.1E-19 3.7E-24 108.6 10.6 73 27-99 35-116 (118)
8 2cqd_A RNA-binding region cont 99.8 1.2E-19 4E-24 108.3 10.6 73 26-99 11-92 (116)
9 2dgo_A Cytotoxic granule-assoc 99.8 9.7E-20 3.3E-24 108.4 10.2 74 26-99 9-91 (115)
10 3s7r_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 103.3 9.7 73 27-99 6-86 (87)
11 2lkz_A RNA-binding protein 5; 99.8 2.1E-20 7.3E-25 108.7 6.6 72 28-99 5-91 (95)
12 2cq0_A Eukaryotic translation 99.8 1E-19 3.4E-24 106.4 9.3 73 27-99 10-91 (103)
13 2la6_A RNA-binding protein FUS 99.8 9.6E-20 3.3E-24 105.9 8.9 73 27-99 8-97 (99)
14 2kxn_B Transformer-2 protein h 99.8 1.7E-20 6E-25 114.3 5.9 74 26-99 40-122 (129)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.3E-20 1.5E-24 104.4 7.0 71 29-99 4-83 (85)
16 2ywk_A Putative RNA-binding pr 99.8 9.6E-20 3.3E-24 105.0 8.4 72 27-99 11-91 (95)
17 1x5u_A Splicing factor 3B subu 99.8 8.8E-20 3E-24 106.9 8.3 73 27-99 10-91 (105)
18 2dh8_A DAZ-associated protein 99.8 1.1E-19 3.9E-24 106.5 8.5 73 26-99 10-91 (105)
19 2dnm_A SRP46 splicing factor; 99.8 1E-19 3.5E-24 106.4 8.2 73 27-99 8-89 (103)
20 2lea_A Serine/arginine-rich sp 99.8 3.7E-20 1.3E-24 113.6 6.5 74 26-99 41-123 (135)
21 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.7E-24 103.1 8.0 70 30-99 4-82 (87)
22 3md1_A Nuclear and cytoplasmic 99.8 1.2E-19 4.2E-24 102.1 7.9 67 33-99 2-77 (83)
23 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.9E-24 105.4 7.6 72 28-99 4-84 (99)
24 1p27_B RNA-binding protein 8A; 99.8 1.4E-19 4.9E-24 106.2 8.0 73 27-99 18-99 (106)
25 2db1_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 106.6 9.9 73 26-99 11-94 (118)
26 2dng_A Eukaryotic translation 99.8 7.3E-19 2.5E-23 102.8 10.7 72 27-99 10-89 (103)
27 2div_A TRNA selenocysteine ass 99.8 2E-19 6.7E-24 104.4 8.2 72 28-99 5-90 (99)
28 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-19 4E-24 107.3 7.3 74 26-99 20-102 (110)
29 3p5t_L Cleavage and polyadenyl 99.8 2E-20 7E-25 107.2 3.9 67 33-99 2-79 (90)
30 2m2b_A RNA-binding protein 10; 99.8 3.2E-20 1.1E-24 113.1 5.0 74 26-99 17-104 (131)
31 2cq4_A RNA binding motif prote 99.8 1.9E-19 6.6E-24 107.0 8.2 73 27-99 20-100 (114)
32 1wel_A RNA-binding protein 12; 99.8 3.4E-19 1.2E-23 107.5 9.4 73 27-99 20-100 (124)
33 2jrs_A RNA-binding protein 39; 99.8 3.7E-19 1.3E-23 105.3 9.3 73 27-99 21-102 (108)
34 3ns6_A Eukaryotic translation 99.8 2.3E-20 7.7E-25 109.1 3.9 71 29-99 3-89 (100)
35 3n9u_C Cleavage and polyadenyl 99.8 1.8E-19 6.2E-24 113.0 8.2 70 30-99 53-133 (156)
36 2cqp_A RNA-binding protein 12; 99.8 1.7E-19 5.9E-24 104.5 7.4 72 28-99 11-91 (98)
37 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-19 4.3E-24 105.8 6.9 72 28-99 8-88 (102)
38 2dgs_A DAZ-associated protein 99.8 2.3E-19 8E-24 104.2 7.8 73 27-99 5-85 (99)
39 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.3E-19 1.1E-23 109.0 8.8 73 27-99 58-139 (140)
40 1u6f_A Tcubp1, RNA-binding pro 99.8 8.5E-19 2.9E-23 107.4 10.6 74 26-99 36-118 (139)
41 1s79_A Lupus LA protein; RRM, 99.8 1.8E-19 6.1E-24 106.1 7.2 71 28-99 7-85 (103)
42 2cph_A RNA binding motif prote 99.8 2.1E-19 7E-24 105.6 7.4 74 26-99 9-93 (107)
43 2dgp_A Bruno-like 4, RNA bindi 99.8 1.3E-19 4.5E-24 106.4 6.5 73 27-99 8-92 (106)
44 2cqg_A TDP-43, TAR DNA-binding 99.8 7.4E-19 2.5E-23 102.7 9.7 74 26-99 9-89 (103)
45 2cpe_A RNA-binding protein EWS 99.8 2.7E-19 9.1E-24 106.2 7.9 74 26-99 9-99 (113)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.8E-24 105.6 6.5 72 28-99 8-88 (102)
47 1x4h_A RNA-binding protein 28; 99.8 3E-19 1E-23 105.5 8.0 73 27-99 10-97 (111)
48 2dnz_A Probable RNA-binding pr 99.8 1.9E-19 6.5E-24 103.7 6.9 70 30-99 3-81 (95)
49 2lxi_A RNA-binding protein 10; 99.8 6.9E-20 2.4E-24 105.5 4.7 67 33-99 2-79 (91)
50 4f25_A Polyadenylate-binding p 99.8 1.8E-19 6.3E-24 107.6 6.7 66 32-99 5-79 (115)
51 3ulh_A THO complex subunit 4; 99.8 5E-19 1.7E-23 104.0 8.4 72 27-99 24-104 (107)
52 2do0_A HnRNP M, heterogeneous 99.8 1E-18 3.5E-23 103.7 9.7 72 27-99 10-90 (114)
53 1x5t_A Splicing factor 3B subu 99.8 2.7E-19 9.3E-24 103.2 7.0 70 30-99 3-82 (96)
54 2d9p_A Polyadenylate-binding p 99.8 6.2E-19 2.1E-23 103.1 8.6 71 27-99 10-89 (103)
55 2x1f_A MRNA 3'-END-processing 99.8 2.6E-19 9.1E-24 103.5 6.8 68 32-99 2-78 (96)
56 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-18 4E-23 101.8 9.4 73 27-99 10-89 (103)
57 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4.3E-23 99.1 9.3 69 31-99 5-81 (89)
58 2kt5_A RNA and export factor-b 99.8 2.1E-18 7.1E-23 103.9 10.7 72 27-99 30-110 (124)
59 2dgx_A KIAA0430 protein; RRM d 99.8 6.2E-19 2.1E-23 102.1 7.7 70 29-99 6-86 (96)
60 2dnh_A Bruno-like 5, RNA bindi 99.8 1.1E-18 3.9E-23 102.1 8.9 71 28-99 11-93 (105)
61 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.1E-23 102.7 9.9 73 26-99 19-108 (114)
62 2ek1_A RNA-binding protein 12; 99.8 1.8E-19 6.2E-24 103.8 5.3 70 30-99 13-91 (95)
63 1wi8_A EIF-4B, eukaryotic tran 99.8 1E-18 3.6E-23 102.3 8.7 72 27-99 10-90 (104)
64 1p1t_A Cleavage stimulation fa 99.8 1.6E-19 5.3E-24 105.6 5.0 73 27-99 3-84 (104)
65 2cpy_A RNA-binding protein 12; 99.8 1.3E-18 4.6E-23 103.6 8.9 71 28-99 11-90 (114)
66 2fy1_A RNA-binding motif prote 99.8 6E-19 2.1E-23 105.6 7.5 71 28-99 3-82 (116)
67 2j8a_A Histone-lysine N-methyl 99.8 1.4E-18 4.8E-23 105.7 9.1 67 33-99 3-92 (136)
68 2cpf_A RNA binding motif prote 99.8 5.3E-19 1.8E-23 102.4 6.9 70 30-99 3-84 (98)
69 3q2s_C Cleavage and polyadenyl 99.8 1.1E-18 3.7E-23 115.4 9.2 69 31-99 67-146 (229)
70 2rs2_A Musashi-1, RNA-binding 99.8 5.3E-19 1.8E-23 104.7 7.0 73 26-99 19-100 (109)
71 2mss_A Protein (musashi1); RNA 99.8 2.5E-19 8.7E-24 99.2 5.1 66 34-99 1-74 (75)
72 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.6E-18 5.4E-23 108.1 9.2 73 27-99 34-115 (156)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-18 6.7E-23 101.3 9.1 70 28-99 11-88 (102)
74 1x4b_A Heterogeneous nuclear r 99.8 1.2E-18 4E-23 103.9 8.2 71 28-99 23-102 (116)
75 2cq3_A RNA-binding protein 9; 99.8 3.3E-18 1.1E-22 99.9 9.9 72 26-99 9-89 (103)
76 3ex7_B RNA-binding protein 8A; 99.8 5.5E-19 1.9E-23 106.6 6.6 73 27-99 17-98 (126)
77 1x4a_A Splicing factor, argini 99.8 3.3E-18 1.1E-22 100.9 9.7 70 27-99 17-95 (109)
78 2jwn_A Embryonic polyadenylate 99.8 5.5E-19 1.9E-23 106.3 6.5 70 30-99 34-111 (124)
79 2hgl_A HNRPF protein, heteroge 99.8 1.6E-18 5.6E-23 106.6 8.3 72 27-99 39-121 (136)
80 1x4e_A RNA binding motif, sing 99.8 7.7E-20 2.6E-24 103.5 2.1 70 30-99 3-81 (85)
81 2dhg_A TRNA selenocysteine ass 99.8 8.3E-19 2.9E-23 102.6 6.5 71 28-99 5-86 (104)
82 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-18 6.8E-23 108.8 8.7 73 27-99 67-148 (165)
83 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.5E-19 1.9E-23 98.1 5.4 66 33-99 1-75 (77)
84 2err_A Ataxin-2-binding protei 99.8 2.2E-18 7.6E-23 102.0 8.1 72 26-99 23-103 (109)
85 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-18 5.5E-23 108.0 7.8 73 27-99 65-146 (158)
86 4a8x_A RNA-binding protein wit 99.8 7.8E-19 2.7E-23 99.6 5.8 69 31-99 3-81 (88)
87 2cpi_A CCR4-NOT transcription 99.8 1.3E-18 4.5E-23 103.2 6.6 73 27-99 10-97 (111)
88 1wg5_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 100.1 8.5 72 27-99 10-90 (104)
89 2nlw_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 101.4 7.2 71 27-99 10-96 (105)
90 2dgv_A HnRNP M, heterogeneous 99.8 1.9E-18 6.4E-23 99.0 6.8 70 28-99 4-82 (92)
91 2dgw_A Probable RNA-binding pr 99.8 9.5E-18 3.3E-22 96.0 9.6 69 28-99 6-83 (91)
92 2ki2_A SS-DNA binding protein 99.8 4.2E-19 1.4E-23 101.4 3.6 67 33-99 2-76 (90)
93 2xs2_A Deleted in azoospermia- 99.8 8.5E-18 2.9E-22 98.0 8.9 70 28-99 5-82 (102)
94 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-18 4.6E-23 96.1 5.0 66 34-99 1-74 (75)
95 4f02_A Polyadenylate-binding p 99.7 4.7E-18 1.6E-22 110.6 8.1 71 29-99 12-91 (213)
96 2e44_A Insulin-like growth fac 99.7 2.8E-18 9.6E-23 99.0 6.1 69 29-99 12-88 (96)
97 2dis_A Unnamed protein product 99.7 5.2E-18 1.8E-22 99.9 7.2 70 30-99 6-88 (109)
98 2krb_A Eukaryotic translation 99.7 1.5E-18 5E-23 97.6 4.2 64 33-98 2-81 (81)
99 2dnn_A RNA-binding protein 12; 99.7 8.3E-18 2.9E-22 99.9 7.1 70 28-99 12-89 (109)
100 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.2E-18 4.2E-23 101.6 3.2 72 27-99 14-94 (100)
101 2hgn_A Heterogeneous nuclear r 99.7 2.1E-18 7.3E-23 106.4 4.0 71 27-99 41-119 (139)
102 1sjq_A Polypyrimidine tract-bi 99.7 3.7E-18 1.3E-22 100.8 4.7 68 28-99 12-88 (105)
103 2fc9_A NCL protein; structure 99.7 2E-17 6.8E-22 96.3 7.8 69 27-99 10-87 (101)
104 2lmi_A GRSF-1, G-rich sequence 99.7 4.8E-18 1.6E-22 100.2 5.1 72 27-99 6-88 (107)
105 3md3_A Nuclear and cytoplasmic 99.7 4.6E-17 1.6E-21 100.9 9.4 73 27-99 82-163 (166)
106 2fc8_A NCL protein; structure 99.7 4.7E-17 1.6E-21 94.8 8.7 70 27-99 10-88 (102)
107 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.9E-23 101.6 1.7 72 27-99 12-91 (101)
108 1l3k_A Heterogeneous nuclear r 99.7 3E-17 1E-21 104.6 8.4 73 27-99 8-88 (196)
109 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5.2E-22 101.1 6.6 71 27-99 37-117 (126)
110 2a3j_A U1 small nuclear ribonu 99.7 1.9E-17 6.5E-22 100.7 6.9 68 29-99 26-106 (127)
111 1x4d_A Matrin 3; structural ge 99.7 1.2E-17 4.2E-22 98.1 5.8 67 29-99 12-88 (102)
112 1why_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 94.4 7.9 69 27-99 12-89 (97)
113 1x4c_A Splicing factor, argini 99.7 5.1E-17 1.7E-21 95.8 8.5 67 28-99 11-89 (108)
114 2f3j_A RNA and export factor b 99.7 2.2E-17 7.4E-22 105.4 7.3 70 29-99 85-163 (177)
115 2lcw_A RNA-binding protein FUS 99.6 5.9E-19 2E-23 105.2 0.0 72 28-99 3-91 (116)
116 1fxl_A Paraneoplastic encephal 99.7 3.9E-17 1.3E-21 101.4 8.2 68 32-99 2-78 (167)
117 2e5g_A U6 snRNA-specific termi 99.7 5.6E-17 1.9E-21 93.3 8.2 67 29-99 5-78 (94)
118 2cq1_A PTB-like protein L; RRM 99.7 4.9E-17 1.7E-21 95.4 7.9 68 28-99 11-87 (101)
119 2cpj_A Non-POU domain-containi 99.7 4.7E-17 1.6E-21 94.4 7.8 69 27-99 10-85 (99)
120 2g4b_A Splicing factor U2AF 65 99.7 8.9E-17 3E-21 100.5 9.5 71 29-99 91-170 (172)
121 2ytc_A PRE-mRNA-splicing facto 99.7 5.7E-17 1.9E-21 91.5 7.7 69 27-99 7-83 (85)
122 2e5j_A Methenyltetrahydrofolat 99.7 3E-17 1E-21 95.0 6.6 68 27-99 14-90 (97)
123 2cpx_A Hypothetical protein FL 99.7 1.3E-17 4.5E-22 99.0 5.1 73 27-99 20-101 (115)
124 2dnp_A RNA-binding protein 14; 99.7 4.2E-17 1.4E-21 93.2 7.0 67 27-99 4-77 (90)
125 2jvo_A Nucleolar protein 3; nu 99.7 2.5E-17 8.4E-22 97.5 6.2 68 26-99 25-99 (108)
126 2yh0_A Splicing factor U2AF 65 99.7 4.3E-16 1.5E-20 99.3 12.4 72 28-99 110-190 (198)
127 2dgt_A RNA-binding protein 30; 99.7 6.6E-17 2.3E-21 92.7 7.7 67 27-99 5-78 (92)
128 2dha_A FLJ20171 protein; RRM d 99.7 3.9E-17 1.3E-21 98.9 6.3 69 29-98 20-100 (123)
129 1b7f_A Protein (SXL-lethal pro 99.7 3.8E-17 1.3E-21 101.7 6.5 69 31-99 2-79 (168)
130 3lqv_A PRE-mRNA branch site pr 99.7 6.7E-17 2.3E-21 96.0 7.1 68 29-99 5-81 (115)
131 3d2w_A TAR DNA-binding protein 99.7 3.2E-17 1.1E-21 93.9 5.5 68 27-99 6-80 (89)
132 2jvr_A Nucleolar protein 3; RN 99.7 3.8E-17 1.3E-21 97.4 6.0 68 28-99 24-101 (111)
133 2ad9_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 98.1 6.0 68 28-99 27-103 (119)
134 2dnq_A RNA-binding protein 4B; 99.7 8.5E-17 2.9E-21 91.8 6.8 66 28-99 4-76 (90)
135 3pgw_S U1-70K; protein-RNA com 99.7 1E-16 3.4E-21 114.4 8.7 71 29-99 99-178 (437)
136 1fjc_A Nucleolin RBD2, protein 99.7 3.6E-17 1.2E-21 94.3 5.2 69 26-99 10-87 (96)
137 1nu4_A U1A RNA binding domain; 99.7 1.5E-17 5.2E-22 96.0 3.6 69 28-99 4-85 (97)
138 2wbr_A GW182, gawky, LD47780P; 99.7 3.4E-17 1.2E-21 93.7 4.8 62 32-99 7-77 (89)
139 3r27_A HnRNP L, heterogeneous 99.7 7.4E-17 2.5E-21 94.5 6.1 67 29-99 18-93 (100)
140 1wex_A Hypothetical protein (r 99.7 9.1E-17 3.1E-21 94.6 6.5 68 28-99 11-87 (104)
141 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 92.7 7.5 66 28-99 7-79 (103)
142 1x4g_A Nucleolysin TIAR; struc 99.7 9.8E-17 3.4E-21 94.6 6.6 69 27-99 20-95 (109)
143 2i2y_A Fusion protein consists 99.7 7.5E-17 2.6E-21 99.9 6.0 70 27-99 68-144 (150)
144 2la4_A Nuclear and cytoplasmic 99.7 6.3E-17 2.1E-21 94.1 5.1 68 28-99 23-97 (101)
145 2qfj_A FBP-interacting repress 99.7 1.8E-16 6.2E-21 102.2 7.7 70 30-99 123-201 (216)
146 1wf1_A RNA-binding protein RAL 99.7 7.1E-16 2.4E-20 91.0 9.6 65 29-99 24-96 (110)
147 1x4f_A Matrin 3; structural ge 99.7 1.9E-16 6.6E-21 94.4 7.1 68 28-99 21-98 (112)
148 1sjr_A Polypyrimidine tract-bi 99.7 1.6E-16 5.6E-21 100.2 6.9 69 27-99 41-120 (164)
149 2qfj_A FBP-interacting repress 99.7 7.8E-18 2.7E-22 108.7 -0.0 72 28-99 24-104 (216)
150 1whx_A Hypothetical protein ri 99.7 5.9E-17 2E-21 96.2 3.7 67 29-99 7-80 (111)
151 2hvz_A Splicing factor, argini 99.7 5.4E-17 1.9E-21 94.4 3.5 64 33-99 1-71 (101)
152 2xnq_A Nuclear polyadenylated 99.7 3.6E-16 1.2E-20 90.7 6.9 68 26-99 16-91 (97)
153 1l3k_A Heterogeneous nuclear r 99.7 6.1E-16 2.1E-20 98.5 8.6 71 29-99 101-179 (196)
154 3egn_A RNA-binding protein 40; 99.6 3.6E-17 1.2E-21 100.7 2.6 71 29-99 42-126 (143)
155 1wf0_A TDP-43, TAR DNA-binding 99.6 3.5E-16 1.2E-20 88.9 6.5 65 30-99 3-74 (88)
156 1b7f_A Protein (SXL-lethal pro 99.6 6.2E-16 2.1E-20 96.2 7.9 71 29-99 86-167 (168)
157 2cpd_A Apobec-1 stimulating pr 99.6 1.5E-15 5.3E-20 87.9 8.6 67 27-99 10-85 (99)
158 4f02_A Polyadenylate-binding p 99.6 4.9E-16 1.7E-20 101.0 6.8 67 31-99 102-177 (213)
159 2cjk_A Nuclear polyadenylated 99.6 1.8E-16 6E-21 98.7 4.3 69 31-99 86-162 (167)
160 2kvi_A Nuclear polyadenylated 99.6 2.2E-16 7.4E-21 91.2 4.2 67 27-99 5-79 (96)
161 3zzy_A Polypyrimidine tract-bi 99.6 6.3E-16 2.1E-20 94.3 6.1 72 26-99 22-102 (130)
162 2cjk_A Nuclear polyadenylated 99.6 4.7E-16 1.6E-20 96.7 5.7 69 31-99 2-77 (167)
163 1wg1_A KIAA1579 protein, homol 99.6 4.8E-16 1.6E-20 88.5 5.2 62 31-99 4-74 (88)
164 2cqh_A IGF-II mRNA-binding pro 99.6 3.9E-16 1.3E-20 89.5 4.7 66 29-99 5-79 (93)
165 2dnl_A Cytoplasmic polyadenyla 99.6 5.3E-16 1.8E-20 92.3 5.2 53 29-82 5-62 (114)
166 1fxl_A Paraneoplastic encephal 99.6 1.5E-15 5.1E-20 94.2 7.3 71 29-99 85-166 (167)
167 3md3_A Nuclear and cytoplasmic 99.6 8.6E-16 2.9E-20 95.2 6.0 66 33-99 1-75 (166)
168 1x5p_A Negative elongation fac 99.6 2.8E-15 9.6E-20 86.6 7.7 67 27-99 10-83 (97)
169 2voo_A Lupus LA protein; RNA-b 99.6 2.6E-15 9E-20 96.8 8.2 68 31-99 108-183 (193)
170 3tyt_A Heterogeneous nuclear r 99.6 1.2E-15 4E-20 99.2 6.4 66 31-99 3-76 (205)
171 3pgw_A U1-A; protein-RNA compl 99.6 2E-15 6.9E-20 101.2 7.8 70 27-99 4-86 (282)
172 2e5i_A Heterogeneous nuclear r 99.6 8.9E-15 3.1E-19 88.6 9.2 67 30-99 23-98 (124)
173 3nmr_A Cugbp ELAV-like family 99.6 2.8E-15 9.6E-20 93.6 7.1 70 29-99 92-173 (175)
174 3nmr_A Cugbp ELAV-like family 99.6 2.5E-15 8.5E-20 93.9 6.8 68 31-98 2-83 (175)
175 2cq2_A Hypothetical protein LO 99.6 1.8E-15 6.2E-20 90.4 5.8 67 29-99 22-102 (114)
176 2hzc_A Splicing factor U2AF 65 99.6 3.2E-15 1.1E-19 84.4 6.6 66 29-98 3-85 (87)
177 3smz_A Protein raver-1, ribonu 99.6 6.6E-15 2.3E-19 98.8 8.6 69 31-99 94-171 (284)
178 3beg_B Splicing factor, argini 99.6 9.4E-16 3.2E-20 91.4 3.5 61 29-94 13-80 (115)
179 3smz_A Protein raver-1, ribonu 99.6 1.2E-14 4.1E-19 97.5 8.2 71 28-99 180-260 (284)
180 2pe8_A Splicing factor 45; RRM 99.6 1.9E-14 6.6E-19 84.7 7.6 71 30-100 6-91 (105)
181 3pgw_A U1-A; protein-RNA compl 99.5 3E-14 1E-18 95.5 9.4 69 28-99 203-279 (282)
182 2diu_A KIAA0430 protein; struc 99.5 7E-15 2.4E-19 84.9 5.2 61 31-99 8-80 (96)
183 2ghp_A U4/U6 snRNA-associated 99.5 1.2E-14 4.1E-19 97.9 7.1 72 28-99 206-287 (292)
184 1fje_B Nucleolin RBD12, protei 99.5 1.2E-14 4E-19 91.2 6.6 67 28-99 95-170 (175)
185 2ghp_A U4/U6 snRNA-associated 99.5 3.2E-14 1.1E-18 95.8 7.7 74 26-99 35-114 (292)
186 2adc_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 94.7 5.2 68 29-99 31-106 (229)
187 1fje_B Nucleolin RBD12, protei 99.5 3.2E-15 1.1E-19 93.8 1.5 72 27-99 8-87 (175)
188 2bz2_A Negative elongation fac 99.5 2.3E-14 8E-19 86.2 5.2 66 28-99 35-107 (121)
189 1qm9_A Polypyrimidine tract-bi 99.5 2.3E-14 7.9E-19 91.6 5.4 65 32-99 3-75 (198)
190 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.6E-18 92.4 7.6 69 27-99 17-92 (261)
191 3u1l_A PRE-mRNA-splicing facto 99.5 3.4E-14 1.2E-18 94.5 4.3 68 28-99 130-225 (240)
192 3tyt_A Heterogeneous nuclear r 99.4 9.4E-14 3.2E-18 90.2 5.1 62 30-93 121-193 (205)
193 3sde_A Paraspeckle component 1 99.4 2.8E-13 9.6E-18 90.4 7.1 68 31-99 95-175 (261)
194 2yh0_A Splicing factor U2AF 65 99.4 3E-14 1E-18 90.7 1.9 63 31-99 3-84 (198)
195 1qm9_A Polypyrimidine tract-bi 99.4 5.7E-13 2E-17 85.1 7.6 67 30-99 118-193 (198)
196 2dit_A HIV TAT specific factor 99.4 2.5E-12 8.5E-17 76.1 8.3 69 28-100 11-99 (112)
197 2adc_A Polypyrimidine tract-bi 99.4 5.4E-13 1.9E-17 87.4 5.7 67 30-99 149-224 (229)
198 1jmt_A Splicing factor U2AF 35 99.4 6.5E-14 2.2E-18 82.3 0.7 62 37-99 20-102 (104)
199 3v4m_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 78.6 4.4 70 31-100 4-94 (105)
200 2g4b_A Splicing factor U2AF 65 99.4 2E-12 6.9E-17 80.5 6.9 65 31-99 3-84 (172)
201 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.2E-17 78.5 5.5 70 31-100 19-106 (118)
202 3tht_A Alkylated DNA repair pr 99.3 5.8E-12 2E-16 87.6 5.7 68 28-99 14-95 (345)
203 1owx_A Lupus LA protein, SS-B, 99.2 4.8E-11 1.6E-15 71.8 6.1 70 26-99 12-92 (121)
204 2d9o_A DNAJ (HSP40) homolog, s 99.1 4E-10 1.4E-14 65.7 7.2 51 42-99 27-86 (100)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 6.3E-10 2.1E-14 63.6 7.0 64 30-99 5-82 (91)
206 3s6e_A RNA-binding protein 39; 99.1 9.1E-11 3.1E-15 69.9 3.5 67 30-100 5-90 (114)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 4.4E-09 1.5E-13 60.5 5.1 64 30-99 13-91 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 3.3E-09 1.1E-13 69.0 4.7 56 45-100 142-210 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.6E-11 51.3 6.1 65 29-98 18-95 (117)
210 1wey_A Calcipressin 1; structu 97.4 0.00055 1.9E-08 39.8 6.0 65 30-98 3-79 (104)
211 1uw4_A UPF3X; nonsense mediate 97.2 0.00081 2.8E-08 38.2 5.3 58 33-90 2-70 (91)
212 2dhx_A Poly (ADP-ribose) polym 97.0 0.0038 1.3E-07 36.2 6.6 63 29-97 5-78 (104)
213 1whv_A Poly(A)-specific ribonu 95.7 0.05 1.7E-06 31.2 6.0 43 34-82 17-59 (100)
214 2l08_A Regulator of nonsense t 95.6 0.0055 1.9E-07 35.1 1.8 59 32-90 9-78 (97)
215 3ctr_A Poly(A)-specific ribonu 94.6 0.053 1.8E-06 31.2 3.9 43 34-82 7-49 (101)
216 3pq1_A Poly(A) RNA polymerase; 94.1 0.043 1.5E-06 39.6 3.6 47 32-82 53-99 (464)
217 1wwh_A Nucleoporin 35, nucleop 94.1 0.17 6E-06 29.9 5.6 61 27-93 19-86 (119)
218 4f25_A Polyadenylate-binding p 89.9 0.059 2E-06 31.0 0.0 20 29-48 94-113 (115)
219 3p3d_A Nucleoporin 53; structu 86.7 0.81 2.8E-05 27.5 3.5 66 32-98 7-94 (132)
220 3d45_A Poly(A)-specific ribonu 58.9 35 0.0012 24.7 6.5 44 32-82 440-483 (507)
221 3fut_A Dimethyladenosine trans 55.6 13 0.00045 24.5 3.6 33 33-66 111-143 (271)
222 3uzu_A Ribosomal RNA small sub 53.5 6.2 0.00021 26.2 1.7 34 33-66 115-148 (279)
223 3tqs_A Ribosomal RNA small sub 45.0 8 0.00027 25.3 1.2 32 35-66 99-130 (255)
224 3ftd_A Dimethyladenosine trans 44.1 20 0.00069 23.1 3.0 32 34-65 97-128 (249)
225 1qyr_A KSGA, high level kasuga 43.2 23 0.00078 23.0 3.2 30 34-63 92-121 (252)
226 1i4w_A Mitochondrial replicati 37.7 27 0.00093 24.1 3.0 22 34-55 144-165 (353)
227 1ik9_C DNA ligase IV; DNA END 24.5 59 0.002 14.7 2.0 15 42-56 20-34 (37)
228 1eij_A Hypothetical protein MT 24.5 51 0.0018 17.8 2.1 20 38-57 50-69 (80)
229 2jsh_A Appetite-regulating hor 24.0 38 0.0013 14.3 1.2 22 39-60 2-23 (26)
230 2fh0_A Hypothetical 16.0 kDa p 21.7 61 0.0021 17.6 2.0 19 38-56 48-66 (81)
231 2v31_A Ubiquitin-activating en 20.5 98 0.0034 17.7 2.9 48 27-88 11-62 (112)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=116.89 Aligned_cols=71 Identities=55% Similarity=0.705 Sum_probs=66.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||.|.+++++.|+.+|+++| ||+|.+. ..|||..++|++|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34467999999999999999999999999999999999999999999 9999997 67999999999999986
No 2
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=1.2e-20 Score=112.51 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=67.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+++++.++.+++++| ||+|.+. ..||+..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4455668999999999999999999999999999999999999999999 9999998 688999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 100 ~~ 101 (115)
T 2cpz_A 100 QL 101 (115)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=113.75 Aligned_cols=70 Identities=11% Similarity=0.048 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.+.++|||+|||+++++++|+++|++||.|.++.|+.|+.||+++| ||+|++. ..|||..+.|++|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999 9999998 78999999999999986
No 4
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=107.89 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4456678999999999999999999999999999999999999999988 9999998 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 91 ~~ 92 (94)
T 2e5h_A 91 SI 92 (94)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 5
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=106.99 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=67.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||+++++++|+++|++||.|.++.++.++ +|+++| ||+|.+. ..|||..++|++|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3456677899999999999999999999999999999999998 899998 9999997 68899999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 90 v~~ 92 (100)
T 2do4_A 90 VAI 92 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 6
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.2e-20 Score=105.99 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456678999999999999999999999999999999999999999998 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 90 ~~ 91 (95)
T 2cqc_A 90 SG 91 (95)
T ss_dssp EC
T ss_pred Ee
Confidence 86
No 7
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.1e-19 Score=108.64 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=67.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+++++.++.+|+++| ||+|.+. ..|||..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456678999999999999999999999999999999999999999998 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 115 ~~ 116 (118)
T 2khc_A 115 QL 116 (118)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 8
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=108.25 Aligned_cols=73 Identities=18% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
+..+...++|||+|||+++++++|+++|++||.|.+|+++.++.+++++| ||+|.+. ..+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 45677788999999999999999999999999999999999999999998 9999998 78888 89999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 90 V~~ 92 (116)
T 2cqd_A 90 VNL 92 (116)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 9
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=9.7e-20 Score=108.39 Aligned_cols=74 Identities=16% Similarity=0.324 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
..+....++|||+|||+.+++++|+++|++||.|.+|.++.++.+++++| ||+|.+. ..|||..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 35567788999999999999999999999999999999999998999999 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 89 V~~ 91 (115)
T 2dgo_A 89 TNW 91 (115)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.1e-19 Score=103.30 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=66.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..+++..++|++|+|.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 4566778999999999999999999999999999999999999999999 9999998 5558889999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 86 ~ 86 (87)
T 3s7r_A 86 K 86 (87)
T ss_dssp E
T ss_pred e
Confidence 5
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=108.66 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=64.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCc--ceEEEEeecCCCCCeee--EEEeCCC-------CccCCc----eeCC
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGE--VESCKLIRDKTTGELSV--VANSIFA-------PELNGL----HSQT 92 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~--v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~----~l~g 92 (100)
....-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||+++| ||+|.+. +.|||. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4455668999999999999999999999995 67999999999999999 9999998 677775 6999
Q ss_pred eeeEEEe
Q psy13318 93 ERSRKSM 99 (100)
Q Consensus 93 ~~i~V~~ 99 (100)
|+|+|+|
T Consensus 85 r~i~V~~ 91 (95)
T 2lkz_A 85 KTIGVDF 91 (95)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999987
No 12
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=106.43 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=68.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+|.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4566778999999999999999999999999999999999999999999 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 90 ~~ 91 (103)
T 2cq0_A 90 EW 91 (103)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 13
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=9.6e-20 Score=105.90 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=68.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE--------EEEeecCCCCCeee--EEEeCCC-------CccCCce
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES--------CKLIRDKTTGELSV--VANSIFA-------PELNGLH 89 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~--------~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~ 89 (100)
......++|||+|||+++++++|+++|++||.|.+ ++++.++.+|+++| ||+|.+. ..|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45666789999999999999999999999999999 99999999999999 9999997 6799999
Q ss_pred eCCeeeEEEe
Q psy13318 90 SQTERSRKSM 99 (100)
Q Consensus 90 l~g~~i~V~~ 99 (100)
+.|++|+|.+
T Consensus 88 ~~g~~l~V~~ 97 (99)
T 2la6_A 88 FSGNPIKVSF 97 (99)
T ss_dssp SSSSBCEEEE
T ss_pred eCCcEEEEEe
Confidence 9999999986
No 14
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=1.7e-20 Score=114.31 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=68.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||+++++++|+++|++||.|.+|.++.|+.+++++| ||+|.+. ..|||..|.|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566778999999999999999999999999999999999999999998 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 120 V~~ 122 (129)
T 2kxn_B 120 VDF 122 (129)
T ss_dssp ESC
T ss_pred EEE
Confidence 976
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4.3e-20 Score=104.38 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=66.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..++|++|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999998 9999997 68999999999999986
No 16
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=104.96 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
..+...++|||+|||+.+++++|+++|++||.|.++.++.++. ++++| ||+|.+. ..|||..+.|++|+|
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 4566778999999999999999999999999999999999986 88888 9999998 669999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 90 ~~ 91 (95)
T 2ywk_A 90 SG 91 (95)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.8e-20 Score=106.93 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4566778999999999999999999999999999999999998999998 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 90 ~~ 91 (105)
T 1x5u_A 90 NK 91 (105)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 18
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=106.54 Aligned_cols=73 Identities=25% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
...+...++|||+|||+++++++|+++|++||.|.+|.++.++.+++++| ||+|.+. .. ++..|.|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 10 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 35567788999999999999999999999999999999999999999999 9999998 44 99999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 89 V~~ 91 (105)
T 2dh8_A 89 PKP 91 (105)
T ss_dssp CCC
T ss_pred EEE
Confidence 875
No 19
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=106.40 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=67.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4456678999999999999999999999999999999999999999998 9999998 669999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 88 ~~ 89 (103)
T 2dnm_A 88 QV 89 (103)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 20
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.7e-20 Score=113.60 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=68.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
+......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 35566778999999999999999999999999999999999998999999 9999997 78999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 121 V~~ 123 (135)
T 2lea_A 121 VQM 123 (135)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 21
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=103.15 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=64.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||.++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 4567999999999999999999999999999999999998999999 9999987 67999999999999986
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.2e-19 Score=102.10 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 6899999999999999999999999999999999999999999 9999998 67999999999999986
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=105.42 Aligned_cols=72 Identities=21% Similarity=0.232 Sum_probs=67.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 355678999999999999999999999999999999999998999998 9999998 6899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 84 ~ 84 (99)
T 1whw_A 84 P 84 (99)
T ss_dssp E
T ss_pred E
Confidence 6
No 24
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=106.18 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=67.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4456678999999999999999999999999999999999999999999 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 98 ~~ 99 (106)
T 1p27_B 98 DW 99 (106)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 25
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=106.57 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=66.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCc---ceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCee
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGE---VESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTER 94 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~ 94 (100)
.......++|||+|||+++++++|+++|+.||. |.+|+|+.++. |+++| ||+|.+. ..+|+..|+||.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 345667789999999999999999999999999 89999999987 99999 9999997 449999999999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.+
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99975
No 26
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=7.3e-19 Score=102.81 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=66.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++|| |.+|.++.++.+++++| ||+|.+. ..|||..+.|++|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 4456678999999999999999999999997 99999999999999999 9999998 6799999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 89 ~ 89 (103)
T 2dng_A 89 I 89 (103)
T ss_dssp E
T ss_pred E
Confidence 6
No 27
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=104.44 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcce-EEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCee---
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVE-SCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTER--- 94 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~-~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~--- 94 (100)
.....++|||+|||+++++++|+++|++||.|. +++++.++.+++++| ||+|.+. ..|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 999999999999999 9999998 779999999999
Q ss_pred -eEEEe
Q psy13318 95 -SRKSM 99 (100)
Q Consensus 95 -i~V~~ 99 (100)
|+|+|
T Consensus 85 ~l~v~~ 90 (99)
T 2div_A 85 RFKLNY 90 (99)
T ss_dssp ECCEEE
T ss_pred eEEEee
Confidence 99876
No 28
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.2e-19 Score=107.28 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
+......++|||+|||..+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34566778999999999999999999999999999999999999999998 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 100 V~~ 102 (110)
T 1oo0_B 100 VDW 102 (110)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2e-20 Score=107.21 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=61.5
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccC--cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVG--EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G--~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.+|||+|||+++++++|+++|++|| .|.+++++.|+.+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEE
Confidence 5899999999999999999999999 999999999999999999 9999987 68999999999999975
No 30
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-20 Score=113.12 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=67.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE--EEEeecCCCCCeee--EEEeCCC------CccCCc----eeC
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES--CKLIRDKTTGELSV--VANSIFA------PELNGL----HSQ 91 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~--~~~~~d~~tg~~~G--fV~f~~~------~~lng~----~l~ 91 (100)
+......++|||+|||+++++++|+++|++||.|.. |+|+.|+.+|+++| ||+|.+. ..|||. .+.
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTIEAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHHHHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhcCCCCCccCC
Confidence 345567789999999999999999999999999977 99999999999999 9999986 889999 999
Q ss_pred CeeeEEEe
Q psy13318 92 TERSRKSM 99 (100)
Q Consensus 92 g~~i~V~~ 99 (100)
||+|+|.+
T Consensus 97 gr~l~V~~ 104 (131)
T 2m2b_A 97 GKTINVEF 104 (131)
T ss_dssp GCCCCCEE
T ss_pred CEEEEEEE
Confidence 99999876
No 31
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.9e-19 Score=107.01 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
..+...++|||+|||+++++++|+++|++||.|.+|.++.++.+|+++| ||+|.+. ..|||..|.|++|+|.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 3445567999999999999999999999999999999999999999998 9999988 6789999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 100 ~ 100 (114)
T 2cq4_A 100 A 100 (114)
T ss_dssp E
T ss_pred e
Confidence 6
No 32
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=107.52 Aligned_cols=73 Identities=12% Similarity=0.014 Sum_probs=65.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++||.|.++.++.+..+|+++| ||+|.+. ..|||..|+|++|+|.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVH 99 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 3455678999999999999999999999999999877777778999999 9999998 3399999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 100 ~ 100 (124)
T 1wel_A 100 P 100 (124)
T ss_dssp E
T ss_pred E
Confidence 5
No 33
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=105.32 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=67.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||..+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 4456678999999999999999999999999999999999999999999 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 101 ~~ 102 (108)
T 2jrs_A 101 GH 102 (108)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 34
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=2.3e-20 Score=109.10 Aligned_cols=71 Identities=21% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCCCceEEEcCCCC------CCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCC-
Q psy13318 29 EESKTNLIVNYLPQ------TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQT- 92 (100)
Q Consensus 29 ~~~~~~l~V~nLp~------~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g- 92 (100)
....++|||+|||. ++++++|+++|++||.|.+++++.|+.||+++| ||+|.+. ..|||..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34567999999999 999999999999999999999999999999999 9999997 6799999999
Q ss_pred eeeEEEe
Q psy13318 93 ERSRKSM 99 (100)
Q Consensus 93 ~~i~V~~ 99 (100)
++|+|.+
T Consensus 83 r~l~V~~ 89 (100)
T 3ns6_A 83 HRLFLYT 89 (100)
T ss_dssp CBCEEEE
T ss_pred eEEEEEE
Confidence 9999987
No 35
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=113.03 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccC--cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVG--EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G--~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
...++|||+|||+++++++|+++|++|| .|.+|+++.|+.+|+++| ||+|.+. ..|||..|+|++|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999999999999999 9999998 7899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 133 ~ 133 (156)
T 3n9u_C 133 P 133 (156)
T ss_dssp E
T ss_pred E
Confidence 6
No 36
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=104.50 Aligned_cols=72 Identities=13% Similarity=0.143 Sum_probs=66.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 355678999999999999999999999999999999999999999999 9999987 6899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 91 ~ 91 (98)
T 2cqp_A 91 L 91 (98)
T ss_dssp E
T ss_pred E
Confidence 6
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=105.79 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=66.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..||+..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 455678999999999999999999999999999999999999999988 9999997 6889999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 88 ~ 88 (102)
T 1x5s_A 88 Q 88 (102)
T ss_dssp E
T ss_pred E
Confidence 6
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=104.19 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=66.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|++..+.|++|+|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 84 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEE
Confidence 3455678999999999999999999999999999999999999999998 9999998 3389999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 85 ~ 85 (99)
T 2dgs_A 85 R 85 (99)
T ss_dssp E
T ss_pred E
Confidence 6
No 39
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=108.98 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||..+++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4556678999999999999999999999999999999999999999998 9999997 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 138 ~~ 139 (140)
T 2ku7_A 138 NL 139 (140)
T ss_dssp EC
T ss_pred Ee
Confidence 86
No 40
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=8.5e-19 Score=107.36 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=68.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||.++++++|+++|+.||.|.+|.++.++.+++++| ||+|.+. ..|||..+.|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34566678999999999999999999999999999999999999999999 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 116 v~~ 118 (139)
T 1u6f_A 116 VAL 118 (139)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 41
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=106.07 Aligned_cols=71 Identities=13% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
.+...++|||+|||+++++++|+++|++||.|.+|.++.|+. |+++| ||+|.+. ..++|..++|++|+|.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 455668999999999999999999999999999999999987 99999 9999987 34899999999999976
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=105.58 Aligned_cols=74 Identities=22% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeec-CCCCCeee--EEEeCCC-------Ccc-CCceeCCee
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRD-KTTGELSV--VANSIFA-------PEL-NGLHSQTER 94 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d-~~tg~~~G--fV~f~~~-------~~l-ng~~l~g~~ 94 (100)
.......++|||+|||+.+++++|+++|++||.|.+|.++.+ +.+++++| ||+|.+. ..| |+..+.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 345667789999999999999999999999999999999999 78889888 9999997 678 999999999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.|
T Consensus 89 l~v~~ 93 (107)
T 2cph_A 89 LVLEW 93 (107)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 99986
No 43
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.3e-19 Score=106.35 Aligned_cols=73 Identities=14% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCcee---CCee
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHS---QTER 94 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l---~g~~ 94 (100)
..+...++|||+|||.++++++|+++|++||.|.+|.++.|+.+|+++| ||+|.+. ..|||..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 4566778999999999999999999999999999999999999999998 9999987 67999888 8999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.+
T Consensus 88 l~v~~ 92 (106)
T 2dgp_A 88 IQVKP 92 (106)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99986
No 44
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.4e-19 Score=102.71 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-----CccCCceeCCeeeEEE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-----PELNGLHSQTERSRKS 98 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-----~~lng~~l~g~~i~V~ 98 (100)
.......++|||+|||+++++++|+++|++||.|.+|.++.++.+|+++| ||+|.+. ..-++..++|++|+|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCK 88 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEE
Confidence 35566778999999999999999999999999999999999999999999 9999998 1114789999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 89 ~ 89 (103)
T 2cqg_A 89 L 89 (103)
T ss_dssp C
T ss_pred e
Confidence 6
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=106.18 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=68.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcce--------EEEEeecCCCCCeee--EEEeCCC-------CccCCc
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVE--------SCKLIRDKTTGELSV--VANSIFA-------PELNGL 88 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~--------~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~ 88 (100)
..+....++|||+|||+++++++|+++|++||.|. .++++.++.+++++| ||+|.+. ..|||.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45667788999999999999999999999999999 699999999999998 9999998 679999
Q ss_pred eeCCeeeEEEe
Q psy13318 89 HSQTERSRKSM 99 (100)
Q Consensus 89 ~l~g~~i~V~~ 99 (100)
.+.|++|+|.+
T Consensus 89 ~~~g~~l~V~~ 99 (113)
T 2cpe_A 89 DFQGSKLKVSL 99 (113)
T ss_dssp EETTEECEEEC
T ss_pred ccCCCEEEEEE
Confidence 99999999986
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=105.56 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=66.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999999999999998 9999987 6789999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 88 ~ 88 (102)
T 2cqb_A 88 L 88 (102)
T ss_dssp E
T ss_pred e
Confidence 6
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=105.48 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=67.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccC------CceeC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELN------GLHSQ 91 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~ln------g~~l~ 91 (100)
......++|||+|||+++++++|+++|++||.|.+|.++.|+.+++++| ||+|.+. ..|| +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 4556678999999999999999999999999999999999999999998 9999997 6788 99999
Q ss_pred CeeeEEEe
Q psy13318 92 TERSRKSM 99 (100)
Q Consensus 92 g~~i~V~~ 99 (100)
|++|+|.+
T Consensus 90 g~~l~v~~ 97 (111)
T 1x4h_A 90 GRQLKVDL 97 (111)
T ss_dssp SCEEEEEC
T ss_pred CEEEEEEE
Confidence 99999986
No 48
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=103.70 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||.++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4567999999999999999999999999999999999999999998 9999998 66999999999999986
No 49
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-20 Score=105.47 Aligned_cols=67 Identities=16% Similarity=0.317 Sum_probs=61.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccC-cceEEEEeecCCCCCeee--EEEeCCC-------Ccc-CCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVG-EVESCKLIRDKTTGELSV--VANSIFA-------PEL-NGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G-~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~l-ng~~l~g~~i~V~~ 99 (100)
.+|||+|||+++++++|+++|++|| .|.+|++++|+.+|+++| ||+|.+. ..+ ++..++|++|+|.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 5899999999999999999999999 899999999999999999 9999997 344 56789999999986
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=1.8e-19 Score=107.57 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=60.7
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||+++++++|+++|++||.|.+|+|+.|+. .++| ||+|.+. ..|+|..++|++|+|.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 46899999999999999999999999999999999874 4666 9999997 78999999999999986
No 51
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=5e-19 Score=104.00 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=66.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 455677899999999999999999999999999999999999 899998 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 103 ~~ 104 (107)
T 3ulh_A 103 QL 104 (107)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=103.72 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=65.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.++ +++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 445667899999999999999999999999999999999998 588888 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 89 ~~ 90 (114)
T 2do0_A 89 KM 90 (114)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=103.21 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEE-EEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESC-KLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~-~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|++||.|.++ +++.++.+++++| ||+|.+. ..|||..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999 9999988999998 9999998 77999999999999986
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=103.05 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=65.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.+ +++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44567889999999999999999999999999999999998 788888 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 88 ~~ 89 (103)
T 2d9p_A 88 AL 89 (103)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=2.6e-19 Score=103.50 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 57999999999999999999999999999999999999999998 9999987 68999999999999986
No 56
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=101.83 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=64.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+.+++++|+++|++||.|.+|.++.++.+.+..+||+|.+. ..|||..+.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 45667789999999999999999999999999999999998765433339999997 67999999999999986
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=1.2e-18 Score=99.07 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEE
Confidence 357999999999999999999999999999999999998999998 9999998 67999999999999986
No 58
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=2.1e-18 Score=103.95 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||..+++++|+++|++||.|.++.+..++ +|+++| ||+|.+. ..|||..++|++|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 345667899999999999999999999999999999999998 898888 9999997 669999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 109 ~~ 110 (124)
T 2kt5_A 109 QL 110 (124)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 59
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=102.12 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMK----SLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
....++|||+|||+++++++|+ ++|++||.|.+|+++.|+.+ +..|||+|.+. ..|||..+.|++|+|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4456799999999999999999 99999999999999999876 44559999987 779999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 85 ~~ 86 (96)
T 2dgx_A 85 SL 86 (96)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 60
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=1.1e-18 Score=102.13 Aligned_cols=71 Identities=17% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCC---eee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQT---ERS 95 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g---~~i 95 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++ +|+++| ||+|.+. ..|||..+.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567899999999999999999999999999999999998 788898 9999997 6799999998 999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.|
T Consensus 90 ~V~~ 93 (105)
T 2dnh_A 90 VVKF 93 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 61
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=102.73 Aligned_cols=73 Identities=26% Similarity=0.389 Sum_probs=65.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCcee------
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHS------ 90 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l------ 90 (100)
...+...++|||+|||+++++++|+++|++||.|.++.++.++ +++++| ||+|.+. ..|||..+
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 4556677899999999999999999999999999999999998 899998 9999987 67999998
Q ss_pred --CCeeeEEEe
Q psy13318 91 --QTERSRKSM 99 (100)
Q Consensus 91 --~g~~i~V~~ 99 (100)
.+++|+|.|
T Consensus 98 ~~~~~~l~v~~ 108 (114)
T 1x5o_A 98 SAPTEPLLCKF 108 (114)
T ss_dssp CCCSSCBEEEE
T ss_pred cCCCCceeEEc
Confidence 578898876
No 62
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.8e-19 Score=103.78 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|++||.|.++.++.++.+++++| ||+|.+. ..|||..+.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3458999999999999999999999999999999999999999999 9999997 67999999999999975
No 63
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=102.31 Aligned_cols=72 Identities=19% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC-CCeee--EEEeCCC------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT-GELSV--VANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t-g~~~G--fV~f~~~------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++|| |.+|.++.++.+ |+++| ||+|.+. ..||+..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3455678999999999999999999999999 999999999988 89998 9999998 678999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 89 ~~ 90 (104)
T 1wi8_A 89 DV 90 (104)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-19 Score=105.63 Aligned_cols=73 Identities=27% Similarity=0.355 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
..+...++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3455668999999999999999999999999999999999999999999 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 83 ~~ 84 (104)
T 1p1t_A 83 DN 84 (104)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 65
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=103.61 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=64.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcc-eEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEV-ESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v-~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.| .+|.|+.|+ +|+++| ||+|.+. ..+|+..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 45566799999999999999999999999999 899999999 899999 9999997 4459999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 90 ~ 90 (114)
T 2cpy_A 90 V 90 (114)
T ss_dssp E
T ss_pred E
Confidence 6
No 66
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=6e-19 Score=105.57 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=65.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
+....++|||+|||.++++++|+++|++||.|.+|.++.++ +|+++| ||+|.+. ..|||..+.|++|+|.
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999999998 899988 9999987 6799999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 82 ~ 82 (116)
T 2fy1_A 82 Q 82 (116)
T ss_dssp E
T ss_pred E
Confidence 6
No 67
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.4e-18 Score=105.69 Aligned_cols=67 Identities=12% Similarity=0.117 Sum_probs=62.4
Q ss_pred ceEEEcCC----CCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCC----C-------------CccCCce
Q psy13318 33 TNLIVNYL----PQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIF----A-------------PELNGLH 89 (100)
Q Consensus 33 ~~l~V~nL----p~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~----~-------------~~lng~~ 89 (100)
++|||+|| |+.+++++|+++|++||+|.++.++.|+.||+++| ||+|.+ + ..+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999999999999999999 999995 1 2789999
Q ss_pred eCCeeeEEEe
Q psy13318 90 SQTERSRKSM 99 (100)
Q Consensus 90 l~g~~i~V~~ 99 (100)
|.|++|+|.+
T Consensus 83 I~Gr~irV~l 92 (136)
T 2j8a_A 83 IMGFKFEVIL 92 (136)
T ss_dssp ETTEEEEEEE
T ss_pred ecCcEEEEEE
Confidence 9999999975
No 68
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=102.41 Aligned_cols=70 Identities=20% Similarity=0.305 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCC---CCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKT---TGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~---tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.+.++|||+|||+++++++|+++|++||.|.++.++.++. |++++| ||+|.+. ..|||..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999999886 668888 9999987 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 83 ~~ 84 (98)
T 2cpf_A 83 RI 84 (98)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 69
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=1.1e-18 Score=115.41 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccC--cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVG--EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G--~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+++++++|+++|++|| .|.+|+|+.|+.+|+++| ||+|.+. ..|||..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999 9999998 77999999999999986
No 70
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=5.3e-19 Score=104.71 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||+++++++|+++|++||.|.+|.++.++.+|+++| ||+|.+. ..+ +..++|++|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 35566778999999999999999999999999999999999999999998 9999998 444 5999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 98 V~~ 100 (109)
T 2rs2_A 98 PKV 100 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 71
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.5e-19 Score=99.18 Aligned_cols=66 Identities=21% Similarity=0.184 Sum_probs=62.2
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..++|..++|++|+|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 589999999999999999999999999999999998999998 9999998 45999999999999975
No 72
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.6e-18 Score=108.12 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+|.|+.++.++.++| ||+|.+. ..||+..|.|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999999999999 9999997 669999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 114 ~~ 115 (156)
T 1h2v_Z 114 DW 115 (156)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=101.31 Aligned_cols=70 Identities=10% Similarity=0.077 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|||+++++++|+++|++||. .+|+|+.|+ +|+++| ||+|.+. ..+|+..++||.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3455679999999999999999999999995 599999998 899999 9999998 45799999999999864
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=103.91 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.+|.++.++.+++++| ||+|.+. .. ++..|.|++|+|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 344568999999999999999999999999999999999999999998 9999997 44 9999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 102 ~ 102 (116)
T 1x4b_A 102 R 102 (116)
T ss_dssp C
T ss_pred E
Confidence 6
No 75
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=99.91 Aligned_cols=72 Identities=11% Similarity=0.225 Sum_probs=64.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||+++++++|+++|++||.|.+|.++.++.. ++| ||+|.+. ..|||..++|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 345667789999999999999999999999999999999998754 555 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 87 v~~ 89 (103)
T 2cq3_A 87 VNN 89 (103)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 76
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=5.5e-19 Score=106.61 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+|.++.++.++.++| ||+|.+. ..|||..|.|++|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4556678999999999999999999999999999999999998999998 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 97 ~~ 98 (126)
T 3ex7_B 97 DW 98 (126)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 77
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.3e-18 Score=100.90 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.+..+ +.++| ||+|.+. ..||+..+.|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 45667789999999999999999999999999999999664 34666 9999997 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 94 ~~ 95 (109)
T 1x4a_A 94 EF 95 (109)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 78
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=5.5e-19 Score=106.33 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999 9999998 66999999999999986
No 79
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=1.6e-18 Score=106.60 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=65.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCc---ceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeee
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGE---VESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERS 95 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i 95 (100)
+.....++|||+|||+++++++|+++|++||. |.+|+++.|+. |+++| ||+|.+. ..+|+..++||+|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEE
Confidence 45567789999999999999999999999999 89999999987 99999 9999997 3399999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.+
T Consensus 118 ~V~~ 121 (136)
T 2hgl_A 118 EVFK 121 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.7e-20 Score=103.50 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=65.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|+.|+|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 4567999999999999999999999999999999999999999998 9999998 77999999999998764
No 81
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=102.57 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=65.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhc-cCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCce-eCCeeeE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSS-VGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLH-SQTERSR 96 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~-l~g~~i~ 96 (100)
+....++|||+|||+++++++|+++|++ ||.|.++.++.++ +|+++| ||+|.+. ..|+|.. +.|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4556789999999999999999999999 9999999999999 899999 9999998 6799999 9999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 84 v~~ 86 (104)
T 2dhg_A 84 LSV 86 (104)
T ss_dssp CCB
T ss_pred EEE
Confidence 875
No 82
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2e-18 Score=108.76 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=67.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++| ||+|.+. ..|||..|.|++|+|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3455677999999999999999999999999999999999999999999 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 147 ~~ 148 (165)
T 1rk8_A 147 DW 148 (165)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 83
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=98.10 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=61.9
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..++ ..++|++|+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 5799999999999999999999999999999999999999998 9999998 6777 999999999986
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=101.97 Aligned_cols=72 Identities=13% Similarity=0.232 Sum_probs=64.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||.++++++|+++|++||.|.++.+..++. .++| ||+|.+. ..|||..++|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45566778999999999999999999999999999999999864 3566 9999998 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 101 V~~ 103 (109)
T 2err_A 101 VNN 103 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 85
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=1.6e-18 Score=108.05 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.++.|+.+|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445578999999999999999999999999999999999999999999 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 145 ~~ 146 (158)
T 2kn4_A 145 QM 146 (158)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 86
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=7.8e-19 Score=99.64 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=63.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCC-eee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGE-LSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~-~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||.++++++|+++|++||.|.++.++.++.++. ++| ||+|.+. ..|||..++|++|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999999999999999999987765 777 9999997 67999999999999986
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=103.18 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=64.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH---HhhhccCcceEEEEeecCCCC---Ceee--EEEeCCC-------CccCCceeC
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMK---SLFSSVGEVESCKLIRDKTTG---ELSV--VANSIFA-------PELNGLHSQ 91 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~---~~F~~~G~v~~~~~~~d~~tg---~~~G--fV~f~~~-------~~lng~~l~ 91 (100)
......++|||+|||+++++++|+ ++|++||.|.++.++.++.++ +++| ||+|.+. ..|||..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 445567799999999999999999 999999999999999988754 4457 9999997 779999999
Q ss_pred CeeeEEEe
Q psy13318 92 TERSRKSM 99 (100)
Q Consensus 92 g~~i~V~~ 99 (100)
|++|+|.|
T Consensus 90 gr~l~V~~ 97 (111)
T 2cpi_A 90 GRTLKASL 97 (111)
T ss_dssp TEEEEEES
T ss_pred CEEEEEEe
Confidence 99999986
No 88
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.8e-18 Score=100.13 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=63.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE-EEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES-CKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.+ +.|+.+ .+|+++| ||+|.+. ...++..++||.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34556789999999999999999999999999987 888888 6899999 9999997 333999999999998
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 89 ~~ 90 (104)
T 1wg5_A 89 FK 90 (104)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 89
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=101.41 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCCCCCceEEEcCCCCCC------CHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC
Q psy13318 27 SNEESKTNLIVNYLPQTM------TQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ 91 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~------~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~ 91 (100)
......++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++| ||+|.+. ..|||..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345557899999999999 789999999999999999988 46788888 9999998 779999999
Q ss_pred Ce-eeEEEe
Q psy13318 92 TE-RSRKSM 99 (100)
Q Consensus 92 g~-~i~V~~ 99 (100)
|+ +|+|.+
T Consensus 88 g~~~l~V~~ 96 (105)
T 2nlw_A 88 KQHTFRVNL 96 (105)
T ss_dssp TTCEEEEEC
T ss_pred CCceEEEEE
Confidence 99 999986
No 90
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=1.9e-18 Score=98.96 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=63.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++||.|.++.+..+ +|+++| ||+|.+. ..|||..++|++|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3556789999999999999999999999999999999884 678888 9999987 6799999999999987
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 82 ~ 82 (92)
T 2dgv_A 82 I 82 (92)
T ss_dssp E
T ss_pred E
Confidence 6
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9.5e-18 Score=95.96 Aligned_cols=69 Identities=7% Similarity=0.057 Sum_probs=63.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+++++++|+++|++| .|.++.++.+ .+|+++| ||+|.+. . |||..++|++|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 6899999 9999997 6 99999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 83 ~ 83 (91)
T 2dgw_A 83 R 83 (91)
T ss_dssp E
T ss_pred E
Confidence 5
No 92
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=4.2e-19 Score=101.42 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=63.7
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTHHHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 5899999999999999999999999999999999999999998 9999988 78999999999999976
No 93
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=8.5e-18 Score=98.00 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|||+++++++|+++|++||.|.++.++.++ +|+++| ||+|.+. .. ++..++|++|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 45566899999999999999999999999999999999998 899999 9999988 33 88999999999864
No 94
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.4e-18 Score=96.13 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=61.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
+|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..+++..+.|++|+|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 589999999999999999999999999999999999999998 9999998 44588999999999875
No 95
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=4.7e-18 Score=110.59 Aligned_cols=71 Identities=20% Similarity=0.089 Sum_probs=64.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++| ||+|.+. ..+|+..+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34567999999999999999999999999999999999999999999 9999997 78899999999999875
No 96
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=98.99 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEE-EEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESC-KLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~-~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||.|.++ .++.++.+++ |||+|.+. ..|||..++|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~--afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV--VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE--EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE--EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4456799999999999999999999999999999 5888877655 89999998 67999999999999986
No 97
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=99.89 Aligned_cols=70 Identities=11% Similarity=0.051 Sum_probs=63.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCc-ceEEEEe-ecCCCCCeee--EEEeCCC-------CccC--CceeCCeeeE
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGE-VESCKLI-RDKTTGELSV--VANSIFA-------PELN--GLHSQTERSR 96 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-v~~~~~~-~d~~tg~~~G--fV~f~~~-------~~ln--g~~l~g~~i~ 96 (100)
...++|||+|||+++++++|+++|++||. |.++.++ .++.+|+++| ||+|.+. ..|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 8888888988 9999997 7785 5999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 86 V~~ 88 (109)
T 2dis_A 86 VDW 88 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 98
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=97.58 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCC------CHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCe-eeE
Q psy13318 33 TNLIVNYLPQTM------TQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTE-RSR 96 (100)
Q Consensus 33 ~~l~V~nLp~~~------~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~-~i~ 96 (100)
++|||+|||..+ ++++|+++|++||.|.++.++ +.+|+++| ||+|.+. ..|||..+.|+ +|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 779999999999999999987 45788888 9999997 88999999999 998
Q ss_pred EE
Q psy13318 97 KS 98 (100)
Q Consensus 97 V~ 98 (100)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 74
No 99
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.3e-18 Score=99.88 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=63.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
......+|||+|||+++++++|+++|+.| .|.+|.|+.|+. |+++| ||+|.+. ..+|+..++||.|+|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 34456799999999999999999999999 899999999986 99999 9999997 66899999999999864
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-18 Score=101.57 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecC-CCCCeee--EEEeCCC------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK-TTGELSV--VANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~-~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++|| |.++.++.++ .+|+++| ||+|.+. ..|||..++|++|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 4566778999999999999999999999999 9999999998 6899999 9999997 678999999999998
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 93 ~~ 94 (100)
T 2j76_E 93 DV 94 (100)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 101
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.1e-18 Score=106.43 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=61.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++|| |.+|.|+.|+. |+++| ||+|.+. ..+|+..++||.|+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3455677999999999999999999999999 77999999986 99999 9999987 6789999999999886
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 119 ~ 119 (139)
T 2hgn_A 119 L 119 (139)
T ss_dssp E
T ss_pred E
Confidence 4
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-18 Score=100.85 Aligned_cols=68 Identities=12% Similarity=0.057 Sum_probs=58.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccC--CceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELN--GLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~ln--g~~l~g~~i~V~ 98 (100)
.+...++|||+|||+++++++|+++|++||.|.+|.++.+ +..|||+|++. ..|+ +..+.|++|+|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3556789999999999999999999999999999999875 33459999987 4454 589999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 88 ~ 88 (105)
T 1sjq_A 88 F 88 (105)
T ss_dssp C
T ss_pred E
Confidence 6
No 103
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=96.26 Aligned_cols=69 Identities=13% Similarity=0.153 Sum_probs=60.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.| +++.+ .+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345667899999999999999999999999977 55666 5688888 9999997 669999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 86 ~~ 87 (101)
T 2fc9_A 86 EL 87 (101)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 104
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=100.18 Aligned_cols=72 Identities=11% Similarity=0.057 Sum_probs=64.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCc---ceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeee
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGE---VESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERS 95 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i 95 (100)
......++|||+|||+++++++|+++|+.||. |.+|.++.|+. |+++| ||+|.+. ..+|+..++||.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEE
Confidence 34567789999999999999999999999998 89999999987 99999 9999997 3399999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.+
T Consensus 85 ~V~~ 88 (107)
T 2lmi_A 85 EVYE 88 (107)
T ss_dssp CCEE
T ss_pred EEEE
Confidence 9865
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=4.6e-17 Score=100.94 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||..+++++|+++|++||.|.++.++.++.+|.++| ||+|.+. ..|||..++|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 4455677999999999999999999999999999999999999999998 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
+|
T Consensus 162 ~~ 163 (166)
T 3md3_A 162 NW 163 (166)
T ss_dssp EE
T ss_pred Ee
Confidence 87
No 106
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=94.76 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=62.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|+.|+ .+.++.++.+++++| ||+|.+. ..|||..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4466778999999999999999999999773 788889988999999 9999998 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 87 ~~ 88 (102)
T 2fc8_A 87 DW 88 (102)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 107
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-18 Score=101.59 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++||.|.. .++.++.+|+++| ||+|.+. ..|||..+.|++|+|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 90 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEE
Confidence 34556789999999999999999999999999988 7777777888888 9999997 2399999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 91 ~ 91 (101)
T 1fj7_A 91 K 91 (101)
T ss_dssp C
T ss_pred E
Confidence 6
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=3e-17 Score=104.57 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=66.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
.+....++|||+|||+++++++|+++|++||.|.+|.++.++.+|+++| ||+|.+. ..+++..+.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 4566778999999999999999999999999999999999999999999 9999997 4448899999999987
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 88 ~ 88 (196)
T 1l3k_A 88 R 88 (196)
T ss_dssp E
T ss_pred c
Confidence 5
No 109
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.5e-17 Score=101.08 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=61.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcce--EEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVE--SCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSR 96 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~--~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~ 96 (100)
......++|||+|||+++++++|+++|++| .|. +|.|+.|+. |+++| ||+|.+. ..+++..|+||.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344566789999999999999999999999 677 899999987 99999 9999998 34578999999998
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|..
T Consensus 115 V~~ 117 (126)
T 2hgm_A 115 VFK 117 (126)
T ss_dssp CEE
T ss_pred EEE
Confidence 863
No 110
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-17 Score=100.73 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeee
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMK----SLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERS 95 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i 95 (100)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++| ||+|.+. ..|||..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4456799999999999999876 6999999999988754 567888 9999987 7899999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.|
T Consensus 103 ~V~~ 106 (127)
T 2a3j_A 103 VITF 106 (127)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9987
No 111
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=98.13 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=57.3
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCC--ceeCCeeeEEE
Q psy13318 29 EESKTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNG--LHSQTERSRKS 98 (100)
Q Consensus 29 ~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng--~~l~g~~i~V~ 98 (100)
..+.++|||+|||+ ++++++|+++|++||.|.+|.++.++ ..|||+|++. ..||+ ..+.||+|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 34677999999999 99999999999999999999998754 2459999987 55664 56999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 88 ~ 88 (102)
T 1x4d_A 88 L 88 (102)
T ss_dssp E
T ss_pred E
Confidence 6
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=94.44 Aligned_cols=69 Identities=13% Similarity=0.179 Sum_probs=59.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeC--CeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQ--TERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~--g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|.++.+..+ +..+||+|.+. ..|||..+. |++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 34455689999999999999999999999999999998754 23449999987 679999999 999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 88 ~~ 89 (97)
T 1why_A 88 DF 89 (97)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 113
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.1e-17 Score=95.81 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=59.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCC-----eee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQT-----ERS 95 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g-----~~i 95 (100)
.....++|||+|||+++++++|+++|++||.|.+|.++.+ ..+||+|.+. ..|||..|.| ++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 3456789999999999999999999999999999999886 2459999997 6799999999 999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.+
T Consensus 86 ~V~~ 89 (108)
T 1x4c_A 86 RVKV 89 (108)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9976
No 114
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=105.39 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+.+++++|+++|++||.|.+|.++.++ ++.++| ||+|.+. ..|||..|.|++|+|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 899988 9999987 67999999999999986
No 115
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-19 Score=105.24 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=66.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceE--------EEEeecCCCCCeee--EEEeCCC-------CccCCcee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVES--------CKLIRDKTTGELSV--VANSIFA-------PELNGLHS 90 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~--------~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l 90 (100)
+..+.++|||+|||+++++++|+++|++||.|.+ +.++.++.+++++| ||+|.+. ..|||..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4556789999999999999999999999999999 99999998999998 9999987 67999999
Q ss_pred CCeeeEEEe
Q psy13318 91 QTERSRKSM 99 (100)
Q Consensus 91 ~g~~i~V~~ 99 (100)
.|++|+|.+
T Consensus 83 ~g~~l~V~~ 91 (116)
T 2lcw_A 83 SGNPIKVSF 91 (116)
Confidence 999999976
No 116
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=3.9e-17 Score=101.35 Aligned_cols=68 Identities=60% Similarity=0.826 Sum_probs=64.4
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|+|..+.|++|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 57999999999999999999999999999999999998999999 9999998 56899999999999976
No 117
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=93.35 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=59.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||.|.+| +.++.+|+ .|||+|.+. . |||..++|++|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3455799999999999999999999999999987 77777777 779999998 6 999999999999864
No 118
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.9e-17 Score=95.36 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=57.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------Cc--cCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PE--LNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~--lng~~l~g~~i~V~ 98 (100)
...+.++|||+|||+.+++++|+++|++||.|.++.++.+ +..+||+|++. .. .++..+.|++|+|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 3456679999999999999999999999999999988864 33449999987 33 35788999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 87 ~ 87 (101)
T 2cq1_A 87 Y 87 (101)
T ss_dssp E
T ss_pred E
Confidence 6
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.7e-17 Score=94.43 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=60.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+.+++++|+++|++||.|.++.+..+ +..+||+|.+. ..|+|..+.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 44566789999999999999999999999999999998864 23449999998 68899999999999986
No 120
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=8.9e-17 Score=100.49 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=66.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34478999999999999999999999999999999999998999998 9999998 77999999999999986
No 121
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=91.47 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=60.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------Ccc-CCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PEL-NGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~l-ng~~l~g~~i~V~ 98 (100)
..+...++|||+|||.++++++|+++|++||.|.++.+..+ +..+||+|.+. ..| +|..+.|++|+|.
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 44566789999999999999999999999999999999874 22349999997 557 9999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 83 ~ 83 (85)
T 2ytc_A 83 W 83 (85)
T ss_dssp E
T ss_pred e
Confidence 7
No 122
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3e-17 Score=95.00 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=58.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|. +.++.+ +++| ||+|.+. ..|||..+.|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4455677999999999999999999999999997 666654 3445 9999998 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 89 ~~ 90 (97)
T 2e5j_A 89 AL 90 (97)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 123
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-17 Score=99.00 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=60.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+++++++|+++|++||.|..+.+..+..+++++| ||+|.+. ..|||..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3345678999999999999999999999999995433333333678888 9999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 100 ~~ 101 (115)
T 2cpx_A 100 EF 101 (115)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=93.15 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=60.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+++++++|+++|++||.|.++.++.+ .+||+|.+. ..|||..+.|++|+|.+
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34566789999999999999999999999999999998753 569999997 67999999999999986
No 125
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=2.5e-17 Score=97.45 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=58.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
...+...++|||+|||+++++++|+++|++||.|.++.+. +..|||+|.+. ..|||..++|++|+|.
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4556677899999999999999999999999999999987 23449999987 6799999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 99 ~ 99 (108)
T 2jvo_A 99 Y 99 (108)
T ss_dssp S
T ss_pred E
Confidence 6
No 126
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=4.3e-16 Score=99.28 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=67.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||+.+++++|+++|++||.|.++.+..++.+|.++| ||+|.+. ..|||..++|++|+|.
T Consensus 110 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 110 VPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 189 (198)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 346678999999999999999999999999999999999998999999 9999998 6799999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 190 ~ 190 (198)
T 2yh0_A 190 R 190 (198)
T ss_dssp E
T ss_pred E
Confidence 6
No 127
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=92.66 Aligned_cols=67 Identities=24% Similarity=0.361 Sum_probs=60.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+++++++|+++|++||.|.++.+.++ .+||+|.+. ..|||..+.|++|+|.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34566789999999999999999999999999999998753 569999987 68999999999999986
No 128
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.9e-17 Score=98.89 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=60.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcc----eEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEV----ESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSR 96 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v----~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~ 96 (100)
.....+|||+|||+++++++|+++|++||.| ..|.|+.|+ +|+++| ||+|.+. ...|+..++||.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3556899999999999999999999999875 689999985 799999 9999997 33499999999988
Q ss_pred EE
Q psy13318 97 KS 98 (100)
Q Consensus 97 V~ 98 (100)
|.
T Consensus 99 V~ 100 (123)
T 2dha_A 99 LF 100 (123)
T ss_dssp CE
T ss_pred EE
Confidence 75
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=3.8e-17 Score=101.73 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=64.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|+|..+.|++|+|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 457999999999999999999999999999999999999999998 9999998 57999999999999986
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=6.7e-17 Score=96.00 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=60.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+.+++++|+++|++||.|.++.++.+.. ++| ||+|.+. ..|||..+.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE---TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT---TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999999997654 355 9999998 67999999999999987
No 131
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=3.2e-17 Score=93.89 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=55.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC---CccCCcee--CCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA---PELNGLHS--QTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~---~~lng~~l--~g~~i~V~~ 99 (100)
......++|||+|||+++++++|+++|++||.|.+|.++.+ ++| ||+|.+. ..+++..+ .|++|+|++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGEDLIIKGISVHISN 80 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEE
Confidence 44667789999999999999999999999999999999874 455 9999998 66777654 599999875
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.69 E-value=3.8e-17 Score=97.35 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=59.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccC-cceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVG-EVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.....++|||+|||+++++++|+++|++|| .|..+.+..+ +++| ||+|.+. ..|||..++|++|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 8999988643 3556 9999987 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 100 ~~ 101 (111)
T 2jvr_A 100 ER 101 (111)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 133
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=98.08 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=57.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccC--CceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELN--GLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~ln--g~~l~g~~i~V~ 98 (100)
...+.++|||+|||+++++++|+++|++||.|.++.++.+ +..|||+|++. ..++ +..+.|++|+|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 3445679999999999999999999999999999999875 23449999997 4555 468999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 103 ~ 103 (119)
T 2ad9_A 103 F 103 (119)
T ss_dssp E
T ss_pred E
Confidence 6
No 134
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=91.85 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=58.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|||+++++++|+++|++||.|.++.+. +..+||+|.+. ..|||..+.|++|+|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 45667899999999999999999999999999999987 22459999998 68999999999999986
No 135
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=1e-16 Score=114.42 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=66.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++| ||+|.+. ..|||..|.|++|+|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34557999999999999999999999999999999999999999998 9999998 68999999999999986
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=94.29 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=60.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~ 96 (100)
.......++|||+|||+.+++++|+++|++||.|..+ ..+++++| ||+|.+. ..|+|..+.|++|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456677899999999999999999999999988776 34678888 9999997 67999999999999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.+
T Consensus 85 v~~ 87 (96)
T 1fjc_A 85 LYY 87 (96)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 137
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=1.5e-17 Score=95.96 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=60.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCee
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMK----SLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTER 94 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~ 94 (100)
+..+.++|||+|||+++++++|+ ++|++||.|.++.+.. +|+++| ||+|.+. ..|||..+.|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45567899999999999999999 9999999999998874 456667 9999987 679999999999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.+
T Consensus 81 l~v~~ 85 (97)
T 1nu4_A 81 MRIQY 85 (97)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99986
No 138
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=3.4e-17 Score=93.66 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=57.0
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...|||+||++.+++++|+++|.+||+|.++++.. ++| ||+|.++ +.||+..+.||+|+|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 55899999999999999999999999999999865 456 9999998 89999999999999975
No 139
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=7.4e-17 Score=94.47 Aligned_cols=67 Identities=3% Similarity=-0.019 Sum_probs=56.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCce--eCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLH--SQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~--l~g~~i~V~~ 99 (100)
..+.++|||+|||+++++++|+++|++||.|.++.++++ +..|||+|++. ..|++.. +.||+|+|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 445679999999999999999999999999999998753 23449999987 6677764 8899999986
No 140
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.1e-17 Score=94.63 Aligned_cols=68 Identities=4% Similarity=-0.028 Sum_probs=56.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCC--ceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNG--LHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng--~~l~g~~i~V~ 98 (100)
...+.++|||+|||+++++++|+++|++||.|.++.++.+ +..|||+|++. ..|++ ..+.|++|+|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3455679999999999999999999999999999998763 33459999987 44544 46999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 87 ~ 87 (104)
T 1wex_A 87 Y 87 (104)
T ss_dssp E
T ss_pred E
Confidence 6
No 141
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.7e-16 Score=92.73 Aligned_cols=66 Identities=24% Similarity=0.277 Sum_probs=58.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|||+++++++|+++|++||.|.++.++++ .+||+|.+. ..||+..+.|++|+|.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD------YAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS------CEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------EEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3455689999999999999999999999999999998742 459999997 67999999999999986
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.8e-17 Score=94.60 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||..+++++|+++|++||.|.+|.++.+ +..+||+|.+. ..|+|..+.|++|+|.|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 34556789999999999999999999999999999999876 23449999998 68899999999999986
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=7.5e-17 Score=99.91 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=61.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+++++++|+++|++||.|.+++++.+. +..|||+|.+. ..|||..+.|++|+|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP---PGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS---CSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC---CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 455667899999999999999999999999999999998862 22349999997 67999999999999986
No 144
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=6.3e-17 Score=94.13 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=58.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|||.++++++|+++|++||.|.++++... +..+||+|.+. ..|||..++|++|+|.|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3445689999999999999999999999999999998732 23349999987 68899999999999976
No 145
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.8e-16 Score=102.23 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..++|++|+|.+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 4557999999999999999999999999999999999999999999 9999997 77999999999999986
No 146
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=7.1e-16 Score=90.99 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQT-MTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||++ +++++|+++|++||.|.+|.+. +..+||+|.+. ..|||..++|++|+|.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH------KGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE------TTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 444579999999999 9999999999999999999981 22349999998 68899999999999986
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=94.43 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------Ccc--CCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQT-MTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PEL--NGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~l--ng~~l~g~~i~V 97 (100)
...+.++|||+|||++ +++++|+++|++||.|.++.+++. +..|||+|++. ..| ++..+.||+|+|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3556789999999998 999999999999999999998753 23349999987 445 456799999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
++
T Consensus 97 ~~ 98 (112)
T 1x4f_A 97 DL 98 (112)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=1.6e-16 Score=100.25 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=59.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCC--eee
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQT--ERS 95 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g--~~i 95 (100)
.......+|||+||++.+++++|+++|++||+|.+|.+..+. ++| ||+|.+. ..|||..|.| ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 345556789999999999999999999999999999986532 344 9999987 8899999965 999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.|
T Consensus 117 ~V~~ 120 (164)
T 1sjr_A 117 RIDF 120 (164)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 149
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=7.8e-18 Score=108.69 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|+|..+.|++|+|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 344567999999999999999999999999999999999998899988 9999998 6699999999999986
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 104 ~ 104 (216)
T 2qfj_A 104 R 104 (216)
T ss_dssp C
T ss_pred c
Confidence 4
No 150
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-17 Score=96.19 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+.+++++|+++|++||.|.+|.++.+ +..+||+|.+. ..|||..+.|++|+|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999988742 22349999987 78999999999999987
No 151
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=5.4e-17 Score=94.39 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=57.1
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||+++++++|+++|++||.|.++.++.+ .+..+||+|.+. ..|+|..+.|++|+|.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 71 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEE
Confidence 58999999999999999999999999999999887 223349999997 67899999999999986
No 152
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.65 E-value=3.6e-16 Score=90.68 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCCCCCCceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 26 PSNEESKTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.......++|||+|||+ ++++++|+++|++||.|.++.+. +..+||+|.+. ..|||..+.|++|+|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556678999999998 99999999999999999999883 23349999987 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 90 ~~ 91 (97)
T 2xnq_A 90 EV 91 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 153
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.1e-16 Score=98.45 Aligned_cols=71 Identities=8% Similarity=0.107 Sum_probs=63.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||.|..+.++.++.+|.++| ||+|.+. ...+|..++|++|+|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEe
Confidence 34557999999999999999999999999999999999999999999 9999997 33479999999999986
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=3.6e-17 Score=100.65 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEE--Eee---cCCCCCeee--EEEeCCC-------CccCCceeCCee
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCK--LIR---DKTTGELSV--VANSIFA-------PELNGLHSQTER 94 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~--~~~---d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~ 94 (100)
....++|||+|||+++++++|+++|++||.|..+. ++. ...+|+++| ||+|.+. ..|||..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45568999999999999999999999999998741 111 123678888 9999987 679999999999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|.+
T Consensus 122 l~V~~ 126 (143)
T 3egn_A 122 MVVQF 126 (143)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 99986
No 155
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=88.91 Aligned_cols=65 Identities=17% Similarity=0.205 Sum_probs=55.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC---CccCCce--eCCeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA---PELNGLH--SQTERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~---~~lng~~--l~g~~i~V~~ 99 (100)
...++|||+|||+++++++|+++|++||.|.++.++.+ ++| ||+|.+. +.+++.. +.|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEe
Confidence 34679999999999999999999999999999998864 455 9999998 5566654 4899999875
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=6.2e-16 Score=96.19 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCC--eeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQT--ERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g--~~i~V 97 (100)
....++|||+|||..+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45567999999999999999999999999999999999998899998 9999997 7799999988 99999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 166 ~~ 167 (168)
T 1b7f_A 166 RL 167 (168)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 157
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=87.94 Aligned_cols=67 Identities=22% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhcc--CcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSV--GEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
......++|||+|||+.+++++|+++|++| |.|.++.+.+ ..+||+|.+. ..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR------DYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS------SEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC------CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 445567899999999999999999999999 9999988652 2459999997 679999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.|
T Consensus 84 ~~ 85 (99)
T 2cpd_A 84 TL 85 (99)
T ss_dssp EC
T ss_pred EE
Confidence 86
No 158
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=4.9e-16 Score=101.03 Aligned_cols=67 Identities=16% Similarity=0.296 Sum_probs=61.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
...+|||+|||+.+++++|+++|++||.|.+++|+.|+. .++| ||+|.+. ..|||..|+|++|+|.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999999864 4666 9999997 78999999999999987
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.63 E-value=1.8e-16 Score=98.70 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
...+|||+|||.++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..++|..++|++|+|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 162 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEee
Confidence 456899999999999999999999999999999999998999999 9999998 44899999999999986
No 160
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.2e-16 Score=91.25 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=56.5
Q ss_pred CCCCCCceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
....+.++|||+|||+ .+++++|+++|++||.|.++.+. +..+||+|.+. ..|||..+.|++|+|.
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456678999999998 99999999999999999999984 22349999997 6799999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 79 ~ 79 (96)
T 2kvi_A 79 V 79 (96)
T ss_dssp E
T ss_pred E
Confidence 6
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=6.3e-16 Score=94.34 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=58.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCC--eeeE
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQT--ERSR 96 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g--~~i~ 96 (100)
......-.+|||+||++.+++++|+++|++||.|.+|.+..+. ....+||+|.+. ..|||..|.| ++|+
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 3445666789999999999999999999999999999887643 112249999997 8999999988 8999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 100 I~~ 102 (130)
T 3zzy_A 100 IDF 102 (130)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=4.7e-16 Score=96.74 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=60.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-----CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-----PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-----~~lng~~l~g~~i~V~~ 99 (100)
+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..-++..+.|+.|+|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEccccc
Confidence 467999999999999999999999999999999999999999999 9999998 11135678888887764
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.62 E-value=4.8e-16 Score=88.47 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=55.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+++++++|+++|++| .|.++.+. +++| ||+|.+. ..|||..+.|++|+|.+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 46799999999999999999999999 99999884 3555 9999987 77999999999999986
No 164
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=89.48 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCc-ceEEEEeecCCCCCeeeEEEeCCC-------CccCC-ceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGE-VESCKLIRDKTTGELSVVANSIFA-------PELNG-LHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng-~~l~g~~i~V~~ 99 (100)
....++|||+|||+++++++|+++|++||. |..+.+.. +..+||+|.+. ..||| ..+.|++|+|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-----SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-----TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC-----CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 455679999999999999999999999999 66666531 22349999997 67999 999999999986
No 165
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-16 Score=92.28 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=48.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC---CCeee--EEEeCCC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT---GELSV--VANSIFA 82 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t---g~~~G--fV~f~~~ 82 (100)
....++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++| ||+|.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~ 62 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEE 62 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCH
Confidence 34567999999999999999999999999999 888888877 78888 9999997
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.5e-15 Score=94.15 Aligned_cols=71 Identities=28% Similarity=0.347 Sum_probs=64.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCee--eEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTER--SRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~--i~V 97 (100)
....++|||+|||..+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|||..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 44567899999999999999999999999999999999998999998 9999997 779999999975 788
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
+|
T Consensus 165 ~~ 166 (167)
T 1fxl_A 165 KF 166 (167)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.6e-16 Score=95.16 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
++|||+|||+++++++|+++|++||.|.++.++.++. ++++| ||+|.+. ..++|..+.|++|+|.+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW 75 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEE
Confidence 4899999999999999999999999999999999875 67887 9999998 68999999999999976
No 168
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=86.61 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|| ++++++|+++|++||.|.+|.+.. .+..+||+|.+. ..|||..+.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34556789999996 899999999999999999999842 122349999987 68999999999999986
No 169
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.6e-15 Score=96.82 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=60.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+++++++|+++|++||.|.+|+++.+.. ++++| ||+|++. ....+..++|++|+|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 357899999999999999999999999999999999874 88999 9999998 33345699999999986
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.2e-15 Score=99.23 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=58.5
Q ss_pred CCceEEEcCCC-CCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLP-QTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp-~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+||| +.+++++|+++|++||.|.+|+++.++ +..|||+|.+. ..|||..+.|++|+|.+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 45799999999 899999999999999999999998753 22349999998 78999999999999986
No 171
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=2e-15 Score=101.24 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=62.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMK----SLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTE 93 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~ 93 (100)
.+....++|||+|||+++++++|+ ++|++||.|.+|.+.. +++++| ||+|.+. ..|||..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 456668899999999999999976 8999999999999876 577888 9999997 68999999999
Q ss_pred eeEEEe
Q psy13318 94 RSRKSM 99 (100)
Q Consensus 94 ~i~V~~ 99 (100)
+|+|.|
T Consensus 81 ~l~v~~ 86 (282)
T 3pgw_A 81 PMRIQY 86 (282)
T ss_pred EEEEEE
Confidence 999986
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=8.9e-15 Score=88.60 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCC--eeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQT--ERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g--~~i~V~~ 99 (100)
.....|||+|||+.+++++|+++|++||.|.+|.+.. + +| ..|||+|.+. ..|||..|.| ++|+|++
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-~G-f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-NG-IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-SS-EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-CC-CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3445689999999999999999999999999999865 3 22 1369999987 7899999987 6899975
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.8e-15 Score=93.64 Aligned_cols=70 Identities=14% Similarity=0.335 Sum_probs=62.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeC---CeeeE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQ---TERSR 96 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~---g~~i~ 96 (100)
....++|||+|||+.+++++|+++|++||.|.++.++.++ +|+++| ||+|.+. ..|||..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 4466799999999999999999999999999999999986 488898 9999998 789998776 49999
Q ss_pred EEe
Q psy13318 97 KSM 99 (100)
Q Consensus 97 V~~ 99 (100)
|.|
T Consensus 171 V~~ 173 (175)
T 3nmr_A 171 VKF 173 (175)
T ss_dssp EEE
T ss_pred EEe
Confidence 987
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=2.5e-15 Score=93.88 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCC--Ceee--EEEeCCC-------CccCCceeC---CeeeE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG--ELSV--VANSIFA-------PELNGLHSQ---TERSR 96 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg--~~~G--fV~f~~~-------~~lng~~l~---g~~i~ 96 (100)
..++|||+|||+++++++|+++|++||.|.+++++.++.++ +++| ||+|.+. ..|+|..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999887 8888 9999997 668887765 56666
Q ss_pred EE
Q psy13318 97 KS 98 (100)
Q Consensus 97 V~ 98 (100)
+.
T Consensus 82 ~~ 83 (175)
T 3nmr_A 82 MK 83 (175)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 175
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-15 Score=90.44 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=57.2
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCcee-----CCee
Q psy13318 29 EESKTNLIV--NYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHS-----QTER 94 (100)
Q Consensus 29 ~~~~~~l~V--~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l-----~g~~ 94 (100)
..+..+||| |||++++++++|+++|++||.|.++.++. ++..|||+|.+. ..|||..+ .|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 445678999 77999999999999999999999998764 344559999987 78999988 7899
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|.|.+
T Consensus 98 l~v~~ 102 (114)
T 2cq2_A 98 LYLNF 102 (114)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 99876
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3.2e-15 Score=84.45 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhcc----C-------cceEEEEeecCCCCCeeeEEEeCCC------CccCCceeC
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSV----G-------EVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQ 91 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~ 91 (100)
....++|||+|||+++++++|+++|++| | .|.++.+..+ +..+||+|.+. ..|||..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 4557899999999999999999999999 8 8999998764 23349999997 789999999
Q ss_pred CeeeEEE
Q psy13318 92 TERSRKS 98 (100)
Q Consensus 92 g~~i~V~ 98 (100)
|++|+|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999996
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=6.6e-15 Score=98.79 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=65.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..++|||+|||+.+++++|+++|++||.|.++.++.++.+|+++| ||+|.+. ..|+|..+.|++|+|.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 457999999999999999999999999999999999999999998 9999998 68999999999999986
No 178
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=9.4e-16 Score=91.41 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=52.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCee
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTER 94 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~ 94 (100)
....++|||+|||+++++++|+++|++||.|.+|.++.+ ..|||+|.+. ..|||..|+|++
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 345689999999999999999999999999999999875 3349999997 779999999998
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1.2e-14 Score=97.52 Aligned_cols=71 Identities=23% Similarity=0.240 Sum_probs=64.7
Q ss_pred CCCCCceEEEcCCCCCC-CHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQTM-TQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~-~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V 97 (100)
.....++|||+|||..+ ++++|+++|++||.|.++.++.++ +|+++| ||+|.+. ..|||..+.|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 34567799999999995 999999999999999999999987 688888 9999997 779999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
+|
T Consensus 259 ~~ 260 (284)
T 3smz_A 259 SF 260 (284)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=1.9e-14 Score=84.74 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHhhhccCcceEEEEeecCCC-CCeee--EEEeCCC-------CccCCceeCCee
Q psy13318 30 ESKTNLIVNYLPQ-----TMTQEEMKSLFSSVGEVESCKLIRDKTT-GELSV--VANSIFA-------PELNGLHSQTER 94 (100)
Q Consensus 30 ~~~~~l~V~nLp~-----~~~~~~l~~~F~~~G~v~~~~~~~d~~t-g~~~G--fV~f~~~-------~~lng~~l~g~~ 94 (100)
.+.+.|++.||.. +-++++|++.|++||.|.++.++.++.+ ++++| ||+|.+. ..|||..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3456899999952 2368999999999999999999998754 57788 9999997 889999999999
Q ss_pred eEEEeC
Q psy13318 95 SRKSMF 100 (100)
Q Consensus 95 i~V~~~ 100 (100)
|+|++.
T Consensus 86 i~v~~a 91 (105)
T 2pe8_A 86 VKACFY 91 (105)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999874
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=3e-14 Score=95.47 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeC-CeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQ-TERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~-g~~i~V~~ 99 (100)
.....++|||+|||..+++++|+++|++||.|.+++++.++ +..|||+|.+. ..|||..+. |++|+|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 34456789999999999999999999999999999998654 22449999997 789999999 99999987
No 182
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=7e-15 Score=84.92 Aligned_cols=61 Identities=25% Similarity=0.235 Sum_probs=51.6
Q ss_pred CCceEEEcCCCCCCCHHH----HHHhhhcc-CcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 31 SKTNLIVNYLPQTMTQEE----MKSLFSSV-GEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~----l~~~F~~~-G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
..+.|||+|||+.+++++ |+++|++| |+|.+| ++ ..+||.|.+. +.|+|..+.||+|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg-G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG-CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT-TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec-CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 444599999999999988 56899999 499998 33 2239999998 8899999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 80 ~ 80 (96)
T 2diu_A 80 F 80 (96)
T ss_dssp S
T ss_pred e
Confidence 6
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=1.2e-14 Score=97.88 Aligned_cols=72 Identities=8% Similarity=0.093 Sum_probs=63.9
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHhhhccCcceEEEEeecCC-CCCeee--EEEeCCC------CccCCceeCCeeeEE
Q psy13318 28 NEESKTNLIVNYLPQT-MTQEEMKSLFSSVGEVESCKLIRDKT-TGELSV--VANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~v~~~~~~~d~~-tg~~~G--fV~f~~~------~~lng~~l~g~~i~V 97 (100)
.....++|||+|||+. +++++|+++|++||.|.++.++.++. ||.++| ||+|.+. ..|||..+.|++|+|
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISV 285 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEE
Confidence 3456689999999999 99999999999999999999999886 688888 9999997 689999999999999
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
+|
T Consensus 286 ~~ 287 (292)
T 2ghp_A 286 SL 287 (292)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.2e-14 Score=91.20 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=59.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEE
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKS 98 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~ 98 (100)
.....++|||+|||..+++++|+++|++||.|..+ ..++.++| ||+|.+. ..|||..+.|++|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988766 45678888 9999998 7799999999999998
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
|
T Consensus 170 ~ 170 (175)
T 1fje_B 170 Y 170 (175)
T ss_dssp E
T ss_pred e
Confidence 6
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=3.2e-14 Score=95.79 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=59.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEEEe
Q psy13318 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V~~ 99 (100)
...+...++|||+|||+++++++|+++|+.||.|.+|.++.++.+.+..+||+|.+. ..++|..+.|++|+|.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 345667889999999999999999999999999999999998865433339999998 55899999999999865
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.51 E-value=1.6e-14 Score=94.72 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=60.2
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 29 EESKTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 29 ~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
....++|||+|||+ ++++++|+++|++||.|.+|+++.++ +..+||+|.+. ..|||..+.|++|+|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45667999999999 99999999999999999999999876 22349999998 57999999999999975
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=3.2e-15 Score=93.78 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=61.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC------CccCCceeCCeeeEEE
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQTERSRKS 98 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~g~~i~V~ 98 (100)
......++|||+|||+++++++|+++|++||.+.. .++.+..+|+++| ||+|.+. ..|||..+.|++|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEe
Confidence 45667889999999999999999999999998876 3455556677788 9999998 5599999999999997
Q ss_pred e
Q psy13318 99 M 99 (100)
Q Consensus 99 ~ 99 (100)
+
T Consensus 87 ~ 87 (175)
T 1fje_B 87 K 87 (175)
T ss_dssp C
T ss_pred c
Confidence 6
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=2.3e-14 Score=86.21 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.....++|||+|| ++++++|+++|++||.|.+|.+.. .+..|||+|.+. ..|||..+.|++|+|.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3456789999996 699999999999999999999862 123349999987 68899999999999986
No 189
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=91.60 Aligned_cols=65 Identities=22% Similarity=0.328 Sum_probs=58.2
Q ss_pred CceEEEcCCCC-CCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 32 KTNLIVNYLPQ-TMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 32 ~~~l~V~nLp~-~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
.++|||+|||+ .+++++|+++|++||.|.+|+++.++ +..|||+|.+. ..|||..+.|++|+|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 57999999999 99999999999999999999998875 22349999998 57999999999999975
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=1.1e-13 Score=92.43 Aligned_cols=69 Identities=25% Similarity=0.285 Sum_probs=59.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
......++|||+|||+++++++|+++|++||.|.+|.+..+ +..|||+|.+. ..+||..+.|++|+|.+
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44566779999999999999999999999999999998653 22349999997 67999999999999976
No 191
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=3.4e-14 Score=94.48 Aligned_cols=68 Identities=7% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCCCCceEEEcCCCCCC---------CHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCcee-
Q psy13318 28 NEESKTNLIVNYLPQTM---------TQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHS- 90 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~---------~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l- 90 (100)
.+...++|||+|||..+ ++++|+++|++||+|.+|+++.+ +..|||+|.+. ..|+|..|
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 35567899999999998 79999999999999999999863 22349999987 78999999
Q ss_pred -----------CCeeeEEEe
Q psy13318 91 -----------QTERSRKSM 99 (100)
Q Consensus 91 -----------~g~~i~V~~ 99 (100)
.|++|.|.|
T Consensus 206 ~~~~~e~~~~~~gr~L~V~w 225 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKW 225 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEE
T ss_pred ccccccccccCCCCEEEEEE
Confidence 899999987
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.44 E-value=9.4e-14 Score=90.19 Aligned_cols=62 Identities=19% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccCcc--eEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEV--ESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTE 93 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v--~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~ 93 (100)
.+.++|||+|||+++++++|+++|++||.| .++++..++ +.++| ||+|.+. ..|||..|.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 345689999999999999999999999999 899988876 34445 9999997 78999999988
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.43 E-value=2.8e-13 Score=90.37 Aligned_cols=68 Identities=18% Similarity=0.194 Sum_probs=59.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------Ccc-CCceeC---CeeeEE
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PEL-NGLHSQ---TERSRK 97 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~l-ng~~l~---g~~i~V 97 (100)
..++|||+|||..+++++|+++|++||.|.++.++.| .+|+++| ||+|.+. ..| ++..+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3569999999999999999999999999999999999 4799998 9999998 666 455554 999998
Q ss_pred Ee
Q psy13318 98 SM 99 (100)
Q Consensus 98 ~~ 99 (100)
.+
T Consensus 174 ~~ 175 (261)
T 3sde_A 174 EP 175 (261)
T ss_dssp EE
T ss_pred ee
Confidence 75
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.43 E-value=3e-14 Score=90.71 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhccC-----------cceEEEEeecCCCCCeee--EEEeCCC------CccCCceeC
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSVG-----------EVESCKLIRDKTTGELSV--VANSIFA------PELNGLHSQ 91 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~G-----------~v~~~~~~~d~~tg~~~G--fV~f~~~------~~lng~~l~ 91 (100)
..++|||+|||+++++++|+++|++|| .|.++.+. +++| ||+|.+. ..|||..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 457999999999999999999999994 55555543 3445 9999998 778999999
Q ss_pred CeeeEEEe
Q psy13318 92 TERSRKSM 99 (100)
Q Consensus 92 g~~i~V~~ 99 (100)
|++|+|.+
T Consensus 77 g~~i~v~~ 84 (198)
T 2yh0_A 77 GQSLKIRR 84 (198)
T ss_dssp TEEEEEEC
T ss_pred CceEEEeC
Confidence 99999975
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=5.7e-13 Score=85.06 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=58.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccC-cceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeC-CeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVG-EVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQ-TERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~-g~~i~V~~ 99 (100)
.+.++|||+|||..+++++|+++|++|| .|.++.+..+. +..|||+|.+. ..|||..+. |++|+|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 4478999999999999999999999999 99999987643 23449999998 779999999 99999986
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.5e-12 Score=76.06 Aligned_cols=69 Identities=13% Similarity=0.148 Sum_probs=55.9
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCC
Q psy13318 28 NEESKTNLIVNYLPQTMT-----------QEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNG 87 (100)
Q Consensus 28 ~~~~~~~l~V~nLp~~~~-----------~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng 87 (100)
.......|+|.||..... +++|+++|++||.|.+|.| .++. ++| ||+|.+. ..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCC
Confidence 345567899999944332 5799999999999999965 5553 566 9999987 78999
Q ss_pred ceeCCeeeEEEeC
Q psy13318 88 LHSQTERSRKSMF 100 (100)
Q Consensus 88 ~~l~g~~i~V~~~ 100 (100)
..+.||+|+|.+.
T Consensus 87 ~~~~gr~l~v~~a 99 (112)
T 2dit_A 87 RWFGGRQITAQAW 99 (112)
T ss_dssp CEETTEECEEEEC
T ss_pred CEECCcEEEEEEe
Confidence 9999999999873
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.38 E-value=5.4e-13 Score=87.41 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=58.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHhhhccC-cceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeC-CeeeEEEe
Q psy13318 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVG-EVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQ-TERSRKSM 99 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~-g~~i~V~~ 99 (100)
.+.++|||+|||..+++++|+++|++|| .|.++.++.+. +..|||+|.+. ..|||..+. |++|+|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 3468999999999999999999999999 99999986532 23449999998 779999999 99999987
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=6.5e-14 Score=82.28 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=54.0
Q ss_pred EcCCCCCCCHHHHHHhh------------hccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeee
Q psy13318 37 VNYLPQTMTQEEMKSLF------------SSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERS 95 (100)
Q Consensus 37 V~nLp~~~~~~~l~~~F------------~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i 95 (100)
+.+||+.+++++|++.| ++||.|.+|.++.++. ++++| ||+|.+. ..|||..+.||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888877766 9999999999998875 78888 9999987 7899999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|.|
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 9987
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.37 E-value=4.9e-13 Score=78.63 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCceEEEcCC--CCCCC--------HHHHHHhhhccCcceEEEEeecCCC--CCeee--EEEeCCC-------CccCCce
Q psy13318 31 SKTNLIVNYL--PQTMT--------QEEMKSLFSSVGEVESCKLIRDKTT--GELSV--VANSIFA-------PELNGLH 89 (100)
Q Consensus 31 ~~~~l~V~nL--p~~~~--------~~~l~~~F~~~G~v~~~~~~~d~~t--g~~~G--fV~f~~~-------~~lng~~ 89 (100)
+.+.|.+.|+ |.... +++|++.|++||.|.++.|++++.+ ++++| ||+|.+. ..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3557888888 44443 3689999999999999999998765 35667 9999997 8999999
Q ss_pred eCCeeeEEEeC
Q psy13318 90 SQTERSRKSMF 100 (100)
Q Consensus 90 l~g~~i~V~~~ 100 (100)
+.||+|+|+++
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999873
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.36 E-value=2e-12 Score=80.50 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=54.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHhhhcc----C-------cceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCe
Q psy13318 31 SKTNLIVNYLPQTMTQEEMKSLFSSV----G-------EVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTE 93 (100)
Q Consensus 31 ~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~ 93 (100)
+.++|||+|||+++++++|+++|++| | .|.++.+..+ +..|||+|.++ ..+||..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46799999999999999999999999 6 6677766543 22339999998 67999999999
Q ss_pred eeEEEe
Q psy13318 94 RSRKSM 99 (100)
Q Consensus 94 ~i~V~~ 99 (100)
+|+|.+
T Consensus 79 ~i~v~~ 84 (172)
T 2g4b_A 79 SLKIRR 84 (172)
T ss_dssp ECEEEC
T ss_pred eeeecC
Confidence 999975
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.2e-12 Score=78.50 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=58.7
Q ss_pred CCceEEEcCCC--CCC---CHHHHHHhhhccCcceEEEEeecCC----CCCeee--EEEeCCC-------CccCCceeCC
Q psy13318 31 SKTNLIVNYLP--QTM---TQEEMKSLFSSVGEVESCKLIRDKT----TGELSV--VANSIFA-------PELNGLHSQT 92 (100)
Q Consensus 31 ~~~~l~V~nLp--~~~---~~~~l~~~F~~~G~v~~~~~~~d~~----tg~~~G--fV~f~~~-------~~lng~~l~g 92 (100)
+.+.|++.|+- .++ -+++|++.|++||.|.+|.|+.++. +++++| ||+|.+. ..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 45688999983 222 3589999999999999999999875 456778 9999997 8999999999
Q ss_pred eeeEEEeC
Q psy13318 93 ERSRKSMF 100 (100)
Q Consensus 93 ~~i~V~~~ 100 (100)
|+|+|+++
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999874
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=5.8e-12 Score=87.57 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=54.6
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCcee---CCe--
Q psy13318 28 NEESKTNLIVNY--LPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHS---QTE-- 93 (100)
Q Consensus 28 ~~~~~~~l~V~n--Lp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l---~g~-- 93 (100)
...+..+|||+| |++.+++++|+++|++||+|.++.+.. ++..|||+|++. ..|||..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 356677999999 588999999999999999999987643 445559999887 88999887 244
Q ss_pred eeEEEe
Q psy13318 94 RSRKSM 99 (100)
Q Consensus 94 ~i~V~~ 99 (100)
.|.|++
T Consensus 90 ~ly~~~ 95 (345)
T 3tht_A 90 TLYLNF 95 (345)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 566654
No 203
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=4.8e-11 Score=71.80 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCC-C-------Ccc--CCceeCCee
Q psy13318 26 PSNEESKTNLIVNYLPQT-MTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIF-A-------PEL--NGLHSQTER 94 (100)
Q Consensus 26 ~~~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~-~-------~~l--ng~~l~g~~ 94 (100)
+-.-..++.|||+||++. ++.++|+++|++||+|..|.+..+.. .|||.|.+ + ..+ ++..|.|..
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 345677889999999999 99999999999999999999988664 47999999 4 555 578899988
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
+++.+
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88765
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4e-10 Score=65.67 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=42.3
Q ss_pred CCCCHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCceeCCeeeEEEe
Q psy13318 42 QTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHSQTERSRKSM 99 (100)
Q Consensus 42 ~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~ 99 (100)
..+++++|+++|++||.|.+|.|+. +++| ||+|.+. ..+ ..+.|++|+|.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l~V~~ 86 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNE--VGLVDNPLKISW 86 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTC--CBCSSSBCEEEC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhc--CCCCCCeEEEEE
Confidence 5689999999999999999999872 5566 9999987 333 346799999987
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=6.3e-10 Score=63.62 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=51.7
Q ss_pred CCCceEEEcCCCC----CCCH----HHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeee
Q psy13318 30 ESKTNLIVNYLPQ----TMTQ----EEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERS 95 (100)
Q Consensus 30 ~~~~~l~V~nLp~----~~~~----~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i 95 (100)
.+..+|+|.-+|. ..-. .+|.+.|.+||+|..++++.|+ +||+|.+. ..|||..+.||.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 3455888877662 2223 5789999999999999999866 59999887 5599999999999
Q ss_pred EEEe
Q psy13318 96 RKSM 99 (100)
Q Consensus 96 ~V~~ 99 (100)
+|++
T Consensus 79 kV~l 82 (91)
T 2dnr_A 79 TIAL 82 (91)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.06 E-value=9.1e-11 Score=69.90 Aligned_cols=67 Identities=7% Similarity=-0.012 Sum_probs=51.9
Q ss_pred CCCceEEEcCCCC--CC--------CHHHHHHhhhccCcceEEEEeecCCCCCeee--EEEeCCC-------CccCCcee
Q psy13318 30 ESKTNLIVNYLPQ--TM--------TQEEMKSLFSSVGEVESCKLIRDKTTGELSV--VANSIFA-------PELNGLHS 90 (100)
Q Consensus 30 ~~~~~l~V~nLp~--~~--------~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G--fV~f~~~-------~~lng~~l 90 (100)
.+.+.|.+.|+=. .. -+++|++.|++||.|.++.+..+. .+| ||+|.+. ..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3455677788722 21 125789999999999999987653 355 9999997 88999999
Q ss_pred CCeeeEEEeC
Q psy13318 91 QTERSRKSMF 100 (100)
Q Consensus 91 ~g~~i~V~~~ 100 (100)
+||+|+|+++
T Consensus 81 ~GR~i~v~~~ 90 (114)
T 3s6e_A 81 AGKMITAAYV 90 (114)
T ss_dssp TTEECEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999999873
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4.4e-09 Score=60.45 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=52.5
Q ss_pred CCCceEEEcCCCCC------CCH---HHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCee
Q psy13318 30 ESKTNLIVNYLPQT------MTQ---EEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTER 94 (100)
Q Consensus 30 ~~~~~l~V~nLp~~------~~~---~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~ 94 (100)
.+..+|+|.-++.. ..+ .+|.+.|.+||+|..++++.|+ +||+|.+. ..|||..+.||.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeE
Confidence 44568999888643 232 4688999999999999999875 69999887 449999999999
Q ss_pred eEEEe
Q psy13318 95 SRKSM 99 (100)
Q Consensus 95 i~V~~ 99 (100)
|+|++
T Consensus 87 L~V~~ 91 (95)
T 1ufw_A 87 VKISG 91 (95)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99985
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=3.3e-09 Score=68.98 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=49.1
Q ss_pred CHHHHHHhhhccCcceEEEEeecCC----CCCeee--EEEeCCC-------CccCCceeCCeeeEEEeC
Q psy13318 45 TQEEMKSLFSSVGEVESCKLIRDKT----TGELSV--VANSIFA-------PELNGLHSQTERSRKSMF 100 (100)
Q Consensus 45 ~~~~l~~~F~~~G~v~~~~~~~d~~----tg~~~G--fV~f~~~-------~~lng~~l~g~~i~V~~~ 100 (100)
.+++|++.|++||.|.++.++.+.. +++++| ||+|.+. ..|||..+.||.|+|+++
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 4578999999999999999986544 458888 9999987 899999999999999875
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.4e-06 Score=51.34 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=56.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhcc-----CcceEEEEeecCCCCCeee-EEEeCCC-------CccCCceeCCeee
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSSV-----GEVESCKLIRDKTTGELSV-VANSIFA-------PELNGLHSQTERS 95 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~-----G~v~~~~~~~d~~tg~~~G-fV~f~~~-------~~lng~~l~g~~i 95 (100)
.+..++|-+-|||..+++..++.+.+++ |.+..+.+..|- .| +|+|.+. ..|+|..+.||+|
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3445677788999999999999999999 999999887753 47 9999998 7999999999999
Q ss_pred EEE
Q psy13318 96 RKS 98 (100)
Q Consensus 96 ~V~ 98 (100)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 974
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00055 Score=39.77 Aligned_cols=65 Identities=12% Similarity=0.076 Sum_probs=50.6
Q ss_pred CCCceEEEcCCCCCCCH-----HHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC-------CccCCceeCCeeeEE
Q psy13318 30 ESKTNLIVNYLPQTMTQ-----EEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA-------PELNGLHSQTERSRK 97 (100)
Q Consensus 30 ~~~~~l~V~nLp~~~~~-----~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~-------~~lng~~l~g~~i~V 97 (100)
...++|+|.||+.++-. +.++++|..|+++......+.- .|--|.|.++ ..|++..+.|++|+|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 34678999999987622 4678999999998886655421 1228899887 899999999999997
Q ss_pred E
Q psy13318 98 S 98 (100)
Q Consensus 98 ~ 98 (100)
-
T Consensus 79 Y 79 (104)
T 1wey_A 79 Y 79 (104)
T ss_dssp E
T ss_pred E
Confidence 4
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.24 E-value=0.00081 Score=38.19 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC----CCeeeEEEeCCC-------CccCCcee
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT----GELSVVANSIFA-------PELNGLHS 90 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t----g~~~GfV~f~~~-------~~lng~~l 90 (100)
++|.|++||+.+||+++.+.++....+........+.+ -.+|.||.|.+. ..++|+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 58999999999999999999999887665555444432 234449999887 77777666
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.0038 Score=36.18 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=44.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHhhhc-----cCcceEEEEeecCCCCCeeeEEEeCCC------CccCCceeCCeeeEE
Q psy13318 29 EESKTNLIVNYLPQTMTQEEMKSLFSS-----VGEVESCKLIRDKTTGELSVVANSIFA------PELNGLHSQTERSRK 97 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-----~G~v~~~~~~~d~~tg~~~GfV~f~~~------~~lng~~l~g~~i~V 97 (100)
...+++|.|.|||..+.++.|+-+|+. -|+|.++.... ..+.|+|.+. ..-..+.|++.+|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 445779999999999999999999987 25777776532 2229999987 222235556666655
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.68 E-value=0.05 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=33.6
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.||+-..|......||.++|++||. ..|+++-|.. .||.|.++
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fgg-v~I~WidDTs-----Alvvf~~~ 59 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDTS-----AFVSLSQP 59 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCS-CCCEEEETTE-----EEEECSCH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCC-EEEEEEcCCe-----EEEEecCH
Confidence 4444499999999999999999994 4577776542 38888876
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.59 E-value=0.0055 Score=35.13 Aligned_cols=59 Identities=10% Similarity=0.135 Sum_probs=38.6
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCC----CCeeeEEEeCCC-------CccCCcee
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT----GELSVVANSIFA-------PELNGLHS 90 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~t----g~~~GfV~f~~~-------~~lng~~l 90 (100)
.-+|.|+.||+.+||+++.+.++..-++........+.+ -.+|.||.|.+. +.++|..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 458999999999999999988876544322111111111 223339999887 77777666
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.59 E-value=0.053 Score=31.17 Aligned_cols=43 Identities=16% Similarity=0.259 Sum_probs=33.5
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.||+-+.|......||.++|++|| -..|.++-|.. .||.|.++
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fg-gv~I~WidDTs-----Alvvf~~~ 49 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFG-NIQISWIDDTS-----AFVSLSQP 49 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSE-EEEEEEEETTE-----EEEEEEEE
T ss_pred eEEEEeCChhhhhHHHHHHHhccC-CEEEEEEcCCe-----EEEEecCH
Confidence 444449999999999999999999 45677776542 38888776
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.14 E-value=0.043 Score=39.57 Aligned_cols=47 Identities=13% Similarity=0.300 Sum_probs=33.2
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
.+.|+|. .|..+++.+|.++|++||.|.++.+-.++ | ....|+|.+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g-~~~~vef~~~ 99 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G-LYAVVEFCQK 99 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S-EEEEEECC--
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C-eEEEEEeCCH
Confidence 5689997 79999999999999999999998765432 1 2227899886
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.07 E-value=0.17 Score=29.88 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=42.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC------CccCCceeCCe
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA------PELNGLHSQTE 93 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~------~~lng~~l~g~ 93 (100)
.+....+-|.|-+.|... ...+...|++||+|.+.... ...-. .|.|.++ ...||..+.|.
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-----NTGNWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-----SSSSEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-----CCCCeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 344556778888888885 56677789999999987651 11122 8999998 67788888753
No 218
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=89.94 E-value=0.059 Score=31.01 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCceEEEcCCCCCCCHHH
Q psy13318 29 EESKTNLIVNYLPQTMTQEE 48 (100)
Q Consensus 29 ~~~~~~l~V~nLp~~~~~~~ 48 (100)
....++|||+|||+++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 44556899999999999864
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.71 E-value=0.81 Score=27.48 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=40.1
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceE-EEEeec------------CCCCCeee---EEEeCCC------CccCCce
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVES-CKLIRD------------KTTGELSV---VANSIFA------PELNGLH 89 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~-~~~~~d------------~~tg~~~G---fV~f~~~------~~lng~~ 89 (100)
.+-|.|=+.|++.... +-+.|++||.|.+ .....+ +..+..-+ .|+|.++ ...||..
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3456666777665554 4556899999876 221110 00011112 8899998 7788999
Q ss_pred eCCeeeEEE
Q psy13318 90 SQTERSRKS 98 (100)
Q Consensus 90 l~g~~i~V~ 98 (100)
+.|.-|-|-
T Consensus 86 i~G~mIGV~ 94 (132)
T 3p3d_A 86 FNGVLLGVI 94 (132)
T ss_dssp ETTEECEEE
T ss_pred eCcEEEEEE
Confidence 998866554
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.94 E-value=35 Score=24.66 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=32.5
Q ss_pred CceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeeeEEEeCCC
Q psy13318 32 KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82 (100)
Q Consensus 32 ~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~GfV~f~~~ 82 (100)
...++|+ .|......+|.++|+.||. .+|+++-| ...||.|.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-----t~a~V~~~~~ 483 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-----TSAFVSLSQP 483 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-----SEEEEECSCH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-----CeEEEEECCH
Confidence 3456666 8888899999999999995 45665543 2349998876
No 221
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=55.57 E-value=13 Score=24.53 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=26.6
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEee
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~ 66 (100)
.-+.|+|||+.++..-|..++.. ..+....++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 46789999999999999999887 6666665543
No 222
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=53.53 E-value=6.2 Score=26.20 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=27.0
Q ss_pred ceEEEcCCCCCCCHHHHHHhhhccCcceEEEEee
Q psy13318 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66 (100)
Q Consensus 33 ~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~ 66 (100)
.-..|+|||+.++..-|..++.....+..+.++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 3578999999999999999998666666665544
No 223
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=44.96 E-value=8 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.8
Q ss_pred EEEcCCCCCCCHHHHHHhhhccCcceEEEEee
Q psy13318 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66 (100)
Q Consensus 35 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~ 66 (100)
..|+|||+.++..-|..++.....+..+.++.
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 38899999999999999998766666665543
No 224
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=44.08 E-value=20 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=24.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEEEe
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLI 65 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~ 65 (100)
-+.|+|+|+.++..-|..++.....+....++
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 47899999999999999988765555555444
No 225
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=43.18 E-value=23 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=22.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhhccCcceEEE
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCK 63 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~ 63 (100)
-+.|+|+|+.++...+..++.....+..+.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~ 121 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMH 121 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEE
Confidence 578999999999998888776543444443
No 226
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=37.72 E-value=27 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=18.7
Q ss_pred eEEEcCCCCCCCHHHHHHhhhc
Q psy13318 34 NLIVNYLPQTMTQEEMKSLFSS 55 (100)
Q Consensus 34 ~l~V~nLp~~~~~~~l~~~F~~ 55 (100)
-..|+|||+.++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999988887764
No 227
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=24.54 E-value=59 Score=14.69 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.2
Q ss_pred CCCCHHHHHHhhhcc
Q psy13318 42 QTMTQEEMKSLFSSV 56 (100)
Q Consensus 42 ~~~~~~~l~~~F~~~ 56 (100)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 467899999998764
No 228
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.46 E-value=51 Score=17.81 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.2
Q ss_pred cCCCCCCCHHHHHHhhhccC
Q psy13318 38 NYLPQTMTQEEMKSLFSSVG 57 (100)
Q Consensus 38 ~nLp~~~~~~~l~~~F~~~G 57 (100)
|.|+..+++++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67888999999999998764
No 229
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=24.01 E-value=38 Score=14.30 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHhhhccCcce
Q psy13318 39 YLPQTMTQEEMKSLFSSVGEVE 60 (100)
Q Consensus 39 nLp~~~~~~~l~~~F~~~G~v~ 60 (100)
|.|+++.-.--.+-|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4566665555566677887653
No 230
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=21.74 E-value=61 Score=17.56 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=16.5
Q ss_pred cCCCCCCCHHHHHHhhhcc
Q psy13318 38 NYLPQTMTQEEMKSLFSSV 56 (100)
Q Consensus 38 ~nLp~~~~~~~l~~~F~~~ 56 (100)
|.|+..+++++|.+++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999998865
No 231
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=20.46 E-value=98 Score=17.66 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=27.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHhhhccCcceEEEEeecCCCCCeee-EEEeCCC---CccCCc
Q psy13318 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV-VANSIFA---PELNGL 88 (100)
Q Consensus 27 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~v~~~~~~~d~~tg~~~G-fV~f~~~---~~lng~ 88 (100)
.+.+......|.++..+ .-| -+.+..+..-+-..| +|.|... .+||+.
T Consensus 11 ~dGE~p~~~~I~~Is~~-----------~~g---~Vt~~~~~~H~l~dGD~V~FseV~GM~eLN~~ 62 (112)
T 2v31_A 11 SNGEQPLSAMVSMVTKD-----------NPG---VVTCLDEARHGFETGDFVSFSEVQGMIQLNGC 62 (112)
T ss_dssp CCCSSCCEEEEEEECCS-----------SSE---EEEECTTCCCCCCTTCEEEECSEESCCTTGGG
T ss_pred CCCCccceeeeeeeecC-----------CCc---EEEEecCCccCCcCCCEEEEEeeEcchhhCCC
Confidence 34555667777766432 111 233343444456667 9999887 777774
Done!