RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13318
(100 letters)
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 41.9 bits (98), Expect = 4e-07
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
S TNLIVNYLPQ MT E+ +LF ++G + +C+++RD TG
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG 41
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 39.1 bits (91), Expect = 6e-06
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 24 QTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKT 69
Q P +++ + ++V +P Q E++ LFS+ GE+++ +L + T
Sbjct: 1 QVPK-KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMT 45
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 38.5 bits (89), Expect = 7e-06
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82
SKTNLIVNYLPQ MTQEE +SLF S+GE+ESCKL+RDK TG+ +
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 52
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 37.4 bits (86), Expect = 2e-05
Identities = 5/52 (9%), Positives = 18/52 (34%)
Query: 24 QTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSV 75
Q E + I+++ + ++ L G + + ++ + +
Sbjct: 1 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEM 52
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 36.9 bits (85), Expect = 4e-05
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 31 SKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
TNL V LP+T+T +++ ++F G + ++RDK T
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 44
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 36.2 bits (83), Expect = 6e-05
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 26 PSNEESK-TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
PS +S N+ + L +++ + + FS+ G + SCK++ D+
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 47
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 35.8 bits (82), Expect = 1e-04
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 25 TPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82
+P +++T + L + +++ FS+VG+V ++I D+ + +A F
Sbjct: 12 SPEERDART-VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFC 68
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.4 bits (81), Expect = 2e-04
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 11 LHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKT 69
L N N NS+ + +++ + +E + GEVE + +
Sbjct: 6 LLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG 64
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 34.9 bits (80), Expect = 2e-04
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 34 NLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
+L V L +T+ + FS G + S ++ RD T
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT 38
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 35.7 bits (81), Expect = 2e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
E+ + L + L T E ++S F G + C ++RD T
Sbjct: 4 EQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK 45
Score = 28.4 bits (62), Expect = 0.11
Identities = 8/52 (15%), Positives = 23/52 (44%)
Query: 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIF 81
+ + V + + + ++ F G++E +++ D+ +G+ A F
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 146
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.2 bits (78), Expect = 4e-04
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 30 ESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
+ ++LIV LP T++++K FS+ GEV ++ +D T
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT 46
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 34.2 bits (78), Expect = 5e-04
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 28 NEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVV 76
+ + + +T + M+ FS G++ ++ +K +
Sbjct: 14 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS 62
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 33.7 bits (77), Expect = 6e-04
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 18 SHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKL 64
S S+ +T + I N + + +++++FS G++ C +
Sbjct: 2 SSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV 48
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 33.4 bits (76), Expect = 7e-04
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKT 69
L+V+ L ++ +++ LF+ G ++ + D++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS 37
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 33.1 bits (75), Expect = 8e-04
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
+N + L V L T+ +++ +FS G + ++ D+ +
Sbjct: 4 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 47
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 33.1 bits (75), Expect = 9e-04
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
NL V+ LP+TMTQ+E++ LFS G + + +++ D+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 42
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 32.6 bits (74), Expect = 0.001
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+ + L TQE ++ F GEV+ C ++RD T
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK 39
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.8 bits (74), Expect = 0.001
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
L V +P +T+E M F++ +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGN 37
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 32.1 bits (72), Expect = 0.004
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
P + + + V L ++T +++ F G V+ K
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 44
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 32.0 bits (72), Expect = 0.004
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 22 ASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+ +E L + L T+E +++ + G++ C ++RD +
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK 59
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.5 bits (71), Expect = 0.004
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
S + V L + +++ + LF G V + + +D+ T
Sbjct: 3 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT 47
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 31.5 bits (71), Expect = 0.004
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
L + L + T+E +K +FS VG ++SC + + K
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKK 34
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.5 bits (71), Expect = 0.004
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
++S T L V L T+E++ LFS G+++ + DK
Sbjct: 5 KKSCT-LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 43
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 31.2 bits (70), Expect = 0.005
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 22 ASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
+S ++ + L V+ +P +++ +F G++ ++I ++
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE 47
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 30.1 bits (67), Expect = 0.012
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLI 65
+ + L + ++ + FS+ G + I
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKI 31
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 30.4 bits (68), Expect = 0.014
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 27 SNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+ + +IV L +T + + +FS G V
Sbjct: 2 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF 46
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 29.8 bits (66), Expect = 0.015
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIR 66
T ++V LP++ Q ++ F G + +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD 34
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 29.5 bits (66), Expect = 0.019
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFA 82
+ V L +E+++ F GEVES +L D T + F
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFK 49
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.9 bits (64), Expect = 0.039
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
+ + V L + + +++ LF G + L +DKTT
Sbjct: 5 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT 46
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.4 bits (63), Expect = 0.045
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 35 LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTT 70
+ + L T++++K FS GEV C L D T
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPIT 37
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 28.1 bits (62), Expect = 0.064
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
E+ + L + L T E ++S F G + C ++RD T
Sbjct: 4 EQLRK-LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK 45
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.1 bits (62), Expect = 0.077
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 18 SHNSASQTPSNEES--KTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+ S S +E NL + +LPQ +++ +F G V S K+ DK T
Sbjct: 2 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN 57
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 28.2 bits (62), Expect = 0.089
Identities = 5/43 (11%), Positives = 17/43 (39%)
Query: 26 PSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDK 68
PS+ + + L +E + + G+++ +++
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP 44
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.7 bits (62), Expect = 0.091
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVE 60
+ +++ LP T+T+E+++ + E +
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD 29
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 26.5 bits (58), Expect = 0.34
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCK 63
+ + V MT++E++ FS G+V
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVF 36
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 26.1 bits (57), Expect = 0.36
Identities = 6/43 (13%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 29 EESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
K L V L + ++E ++ F+++ ++ + +
Sbjct: 6 SSVKI-LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYA 47
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 26.2 bits (57), Expect = 0.40
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 24 QTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSV 56
T + L+ L +T++E+K +F
Sbjct: 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDA 40
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 26.1 bits (56), Expect = 0.49
Identities = 13/73 (17%), Positives = 22/73 (30%)
Query: 25 TPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPE 84
+ S+ SKT ++ LP E++ FS G + L T + +
Sbjct: 3 SGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKA 62
Query: 85 LNGLHSQTERSRK 97
L
Sbjct: 63 FRHLAYSKFHHVP 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.9 bits (56), Expect = 0.52
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 22 ASQTPSNEESKTNLIVNYLPQTMTQEEMKSLF 53
A E+ TNL ++ LP +M ++E++++
Sbjct: 8 AQMAKQQEQDPTNLYISNLPLSMDEQELENML 39
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 24.8 bits (53), Expect = 1.4
Identities = 4/39 (10%), Positives = 15/39 (38%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+ ++ T+ + +SLF + + + + +
Sbjct: 11 CVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRV 49
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 23.3 bits (49), Expect = 4.0
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 35 LIVNYLPQTMTQEEMKSLFSS 55
+++ LP +T +E+ L S
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSD 21
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 23.1 bits (49), Expect = 5.4
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 24 QTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTG 71
+T S + L +++ ++ + G V++ + +K
Sbjct: 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYS 59
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 23.2 bits (49), Expect = 5.7
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 33 TNLIVNYLPQTMTQEEMKSLFSSVGEVESC 62
+ ++V LPQ +E+ L
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCY 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.305 0.118 0.311
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 268,479
Number of extensions: 8830
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 47
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.0 bits)