Diaphorina citri psyllid: psy13318


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
MDAMPQQNGSLHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPELNGLHSQTERSRKSMF
ccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHcccccEEEEEEEECcccccccEEEEEEEcccccccccccEEEEEEEc
**********************************LIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPELNGLHSQTERSRKSMF
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MDAMPQQNGSLHNSSVNSHNSASQTPSNEESKTNLIVNYLPQTMTQEEMKSLFSSVGEVESCKLIRDKTTGELSVVANSIFAPELNGLHSQTERSRKSMF

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
ELAV-like protein 2 Binds to poly-U elements and AU-rich elements (AREs) in the 3'-UTR of target mRNAs. Required for the vegetal localization of vg1 mRNA. Probably required for nervous system development.confidentQ28GD4
ELAV-like protein 4 Binds to AU-rich sequences (AREs) of target mRNAs, including VEGF and FOS mRNA (By similarity). May play a role in neuron-specific RNA processing. Protects CDKN1A mRNA from decay by binding to its 3'-UTR.confidentO09032
ELAV-like protein 2 Binds RNA. Seems to recognize a GAAA motif. Can bind to its own 3'-UTR, the FOS 3'-UTR and the ID 3'-UTR.confidentQ5R9Z6

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0008187 [MF]poly-pyrimidine tract bindingconfidentGO:0097159, GO:0003727, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0044424 [CC]intracellular partconfidentGO:0005575, GO:0044464, GO:0005623, GO:0005622
GO:0015030 [CC]Cajal bodyprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0016607 [CC]nuclear speckprobableGO:0044446, GO:0016604, GO:0043231, GO:0031981, GO:0043233, GO:0005634, GO:0044464, GO:0005623, GO:0005622, GO:0005654, GO:0070013, GO:0043229, GO:0044428, GO:0031974, GO:0005575, GO:0044424, GO:0044451, GO:0043227, GO:0043226, GO:0044422
GO:0005938 [CC]cell cortexprobableGO:0005737, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044444, GO:0071944, GO:0044424
GO:0008266 [MF]poly(U) RNA bindingprobableGO:0097159, GO:0003727, GO:0003674, GO:0003723, GO:0003676, GO:0008187, GO:1901363, GO:0005488
GO:0017091 [MF]AU-rich element bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723
GO:0000122 [BP]negative regulation of transcription from RNA polymerase II promoterprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0010629, GO:0050789, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0060255, GO:0006357, GO:0065007, GO:0048519, GO:0010468, GO:0045934, GO:0019219, GO:0009889, GO:0050794, GO:0045892, GO:0051171, GO:0051172, GO:2001141, GO:0051253, GO:0051252, GO:0006355, GO:0010556, GO:0008150, GO:0010558, GO:0048523
GO:0051260 [BP]protein homooligomerizationprobableGO:0051259, GO:0022607, GO:0071822, GO:0070271, GO:0043933, GO:0006461, GO:0016043, GO:0065003, GO:0044085, GO:0008150, GO:0071840
GO:0003730 [MF]mRNA 3'-UTR bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003729, GO:1901363, GO:0003723
GO:0017131 [MF]uridine-rich cytoplasmic polyadenylylation element bindingprobableGO:0097159, GO:0003727, GO:0003674, GO:0003723, GO:0003676, GO:0008187, GO:1901363, GO:0005488
GO:0031441 [BP]negative regulation of mRNA 3'-end processingprobableGO:0009892, GO:0080090, GO:0019222, GO:0050684, GO:0050686, GO:0031323, GO:0050789, GO:0010605, GO:0019219, GO:0065007, GO:0048519, GO:0010468, GO:0031324, GO:0045934, GO:0060255, GO:0050794, GO:0008150, GO:0051171, GO:0051172, GO:0031440, GO:0051253, GO:0051252, GO:0048523
GO:0007293 [BP]germarium-derived egg chamber formationprobableGO:0032502, GO:0007292, GO:0044702, GO:0000003, GO:0032504, GO:0022414, GO:0048856, GO:0019953, GO:0044767, GO:0003006, GO:0032501, GO:0008150, GO:0044699, GO:0007276, GO:0009653, GO:0048477, GO:0048646, GO:0048609
GO:0030529 [CC]ribonucleoprotein complexprobableGO:0032991, GO:0044464, GO:0005623, GO:0005622, GO:0005575, GO:0044424
GO:0000166 [MF]nucleotide bindingprobableGO:0097159, GO:0036094, GO:0003674, GO:0005488, GO:1901363, GO:1901265
GO:0060856 [BP]establishment of blood-brain barrierprobableGO:0032502, GO:0048856, GO:0048869, GO:0030154, GO:0048468, GO:0044767, GO:0044763, GO:0008150, GO:0009987, GO:0044699
GO:0002064 [BP]epithelial cell developmentprobableGO:0032502, GO:0060429, GO:0048869, GO:0030154, GO:0048468, GO:0009888, GO:0044767, GO:0044763, GO:0030855, GO:0008150, GO:0009987, GO:0044699, GO:0048856
GO:0035150 [BP]regulation of tube sizeprobableGO:0008150, GO:0065008, GO:0065007, GO:0090066
GO:0007224 [BP]smoothened signaling pathwayprobableGO:0044700, GO:0051716, GO:0008150, GO:0050896, GO:0009987, GO:0050794, GO:0023052, GO:0065007, GO:0044763, GO:0007165, GO:0007166, GO:0007154, GO:0050789, GO:0044699
GO:0007417 [BP]central nervous system developmentprobableGO:0032502, GO:0032501, GO:0044707, GO:0007399, GO:0048856, GO:0008150, GO:0048731, GO:0007275, GO:0044699
GO:0036093 [BP]germ cell proliferationprobableGO:0044702, GO:0000003, GO:0032504, GO:0008283, GO:0032501, GO:0009987, GO:0019953, GO:0022414, GO:0048610, GO:0008150, GO:0044699, GO:0007276, GO:0048609
GO:0008049 [BP]male courtship behaviorprobableGO:0060179, GO:0044703, GO:0032501, GO:0032504, GO:0048609, GO:0007618, GO:0019098, GO:0007617, GO:0050896, GO:0007619, GO:0007610, GO:0022414, GO:0008150, GO:0044706, GO:0033057, GO:0000003, GO:0051705, GO:0051704
GO:0008083 [MF]growth factor activityprobableGO:0005102, GO:0003674, GO:0005488, GO:0005515
GO:0008298 [BP]intracellular mRNA localizationprobableGO:0006403, GO:0070727, GO:0009987, GO:0044763, GO:0008150, GO:0033036, GO:0051179, GO:0044699, GO:0051641
GO:0009994 [BP]oocyte differentiationprobableGO:0032502, GO:0044702, GO:0048610, GO:0000003, GO:0032504, GO:0022414, GO:0048869, GO:0030154, GO:0019953, GO:0007292, GO:0003006, GO:0032501, GO:0044763, GO:0044699, GO:0022412, GO:0008150, GO:0009987, GO:0048477, GO:0007276, GO:0048609
GO:0006397 [BP]mRNA processingprobableGO:0016070, GO:0016071, GO:0044238, GO:0044260, GO:0006139, GO:0009987, GO:0006725, GO:0034641, GO:0044237, GO:0043170, GO:0090304, GO:0071704, GO:0010467, GO:0006807, GO:0008150, GO:1901360, GO:0008152, GO:0006396, GO:0046483

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 1FXL, chain A
Confidence level:very confident
Coverage over the Query: 32-99
View the alignment between query and template
View the model in PyMOL