Query psy13319
Match_columns 117
No_of_seqs 106 out of 1507
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 16:26:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.7E-20 3.8E-25 115.6 13.6 85 30-114 31-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.3E-19 2.8E-24 125.8 13.1 85 31-115 267-351 (352)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 8.8E-19 1.9E-23 121.6 11.6 83 32-114 2-84 (352)
4 TIGR01659 sex-lethal sex-letha 99.8 2.1E-18 4.6E-23 119.4 12.1 85 29-113 103-187 (346)
5 KOG0122|consensus 99.8 2.5E-18 5.5E-23 111.3 9.7 85 29-113 185-269 (270)
6 PF00076 RRM_1: RNA recognitio 99.8 1.1E-17 2.4E-22 90.9 10.1 70 36-106 1-70 (70)
7 KOG0121|consensus 99.7 9.6E-18 2.1E-22 99.2 6.7 80 31-110 34-113 (153)
8 PF14259 RRM_6: RNA recognitio 99.7 2.1E-16 4.5E-21 86.1 10.7 70 36-106 1-70 (70)
9 TIGR01645 half-pint poly-U bin 99.7 1.1E-16 2.3E-21 116.9 11.5 83 32-114 203-285 (612)
10 TIGR01659 sex-lethal sex-letha 99.7 1.3E-16 2.8E-21 110.6 11.3 84 32-115 192-277 (346)
11 KOG0117|consensus 99.7 1.7E-16 3.7E-21 110.2 10.6 82 31-112 81-163 (506)
12 TIGR01645 half-pint poly-U bin 99.7 1.3E-16 2.9E-21 116.4 10.4 81 31-111 105-185 (612)
13 KOG0148|consensus 99.7 1E-16 2.2E-21 105.3 8.3 82 33-114 62-143 (321)
14 KOG0149|consensus 99.7 1.1E-16 2.3E-21 103.3 6.9 78 33-111 12-89 (247)
15 TIGR01622 SF-CC1 splicing fact 99.7 1.1E-15 2.4E-20 109.5 12.8 81 32-112 185-265 (457)
16 PLN03120 nucleic acid binding 99.7 6.6E-16 1.4E-20 102.1 10.7 75 33-111 4-78 (260)
17 KOG0107|consensus 99.7 3.6E-16 7.8E-21 97.0 8.8 81 30-115 7-87 (195)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1E-15 2.2E-20 110.8 12.7 82 31-112 293-374 (509)
19 TIGR01628 PABP-1234 polyadenyl 99.7 5.2E-16 1.1E-20 113.7 11.0 78 35-112 2-79 (562)
20 KOG0113|consensus 99.7 1.4E-15 3.1E-20 101.1 10.8 87 26-112 94-180 (335)
21 KOG0145|consensus 99.7 2.9E-15 6.3E-20 98.4 12.0 107 8-114 252-359 (360)
22 KOG0114|consensus 99.7 2.5E-15 5.5E-20 86.0 9.7 81 29-112 14-94 (124)
23 KOG0130|consensus 99.7 5.3E-16 1.1E-20 92.7 7.2 89 24-112 63-151 (170)
24 KOG0145|consensus 99.6 1.7E-15 3.6E-20 99.5 9.4 86 29-114 37-122 (360)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 2.1E-15 4.5E-20 109.9 10.6 81 30-111 55-136 (578)
26 TIGR01628 PABP-1234 polyadenyl 99.6 2.9E-15 6.2E-20 109.8 11.1 82 31-113 283-364 (562)
27 PLN03213 repressor of silencin 99.6 1.9E-15 4.1E-20 106.7 9.6 79 31-113 8-88 (759)
28 TIGR01622 SF-CC1 splicing fact 99.6 4.2E-15 9.1E-20 106.5 11.6 81 31-112 87-167 (457)
29 KOG0126|consensus 99.6 7.5E-17 1.6E-21 100.6 2.3 87 25-111 27-113 (219)
30 KOG0108|consensus 99.6 1E-15 2.3E-20 108.0 7.8 81 34-114 19-99 (435)
31 PLN03121 nucleic acid binding 99.6 6.6E-15 1.4E-19 96.2 10.6 76 30-109 2-77 (243)
32 KOG0125|consensus 99.6 4.3E-15 9.4E-20 100.0 9.7 85 26-112 89-173 (376)
33 smart00362 RRM_2 RNA recogniti 99.6 8.5E-15 1.9E-19 79.0 9.2 72 35-108 1-72 (72)
34 KOG4207|consensus 99.6 9.9E-16 2.2E-20 97.4 6.2 83 31-113 11-93 (256)
35 KOG0111|consensus 99.6 4.7E-16 1E-20 99.9 4.6 84 31-114 8-91 (298)
36 KOG0131|consensus 99.6 1.6E-15 3.5E-20 94.7 6.3 84 29-112 5-88 (203)
37 KOG0148|consensus 99.6 1.4E-14 3.1E-19 95.4 9.9 77 30-112 161-237 (321)
38 COG0724 RNA-binding proteins ( 99.6 3.2E-14 6.9E-19 94.4 11.6 79 33-111 115-193 (306)
39 smart00360 RRM RNA recognition 99.6 1.7E-14 3.7E-19 77.6 8.4 71 38-108 1-71 (71)
40 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4.2E-14 9E-19 102.1 11.6 78 30-112 272-350 (481)
41 TIGR01648 hnRNP-R-Q heterogene 99.6 5E-14 1.1E-18 102.8 11.7 76 31-114 231-308 (578)
42 KOG0105|consensus 99.6 9E-15 1.9E-19 91.8 6.6 80 31-113 4-83 (241)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 4E-14 8.7E-19 102.2 10.6 75 32-112 1-77 (481)
44 KOG0144|consensus 99.6 4.3E-15 9.4E-20 103.0 5.3 84 32-116 123-209 (510)
45 cd00590 RRM RRM (RNA recogniti 99.6 1.1E-13 2.3E-18 75.1 9.9 74 35-109 1-74 (74)
46 KOG0144|consensus 99.6 2.6E-14 5.6E-19 99.2 8.4 84 32-115 33-119 (510)
47 KOG0124|consensus 99.5 2.1E-14 4.6E-19 98.3 4.8 79 34-112 114-192 (544)
48 KOG0117|consensus 99.5 1.1E-13 2.4E-18 96.4 7.5 75 32-114 258-332 (506)
49 KOG1457|consensus 99.5 1.9E-12 4E-17 83.6 11.2 112 4-115 4-120 (284)
50 PF13893 RRM_5: RNA recognitio 99.5 1.2E-12 2.6E-17 68.3 8.6 56 50-110 1-56 (56)
51 KOG0127|consensus 99.5 5.8E-13 1.3E-17 95.0 9.5 85 29-113 288-378 (678)
52 KOG0109|consensus 99.4 2.4E-13 5.2E-18 90.5 6.2 74 35-116 4-77 (346)
53 KOG0127|consensus 99.4 7.4E-13 1.6E-17 94.4 8.9 81 32-113 116-196 (678)
54 smart00361 RRM_1 RNA recogniti 99.4 1.6E-12 3.5E-17 70.8 8.1 62 47-108 2-70 (70)
55 KOG0415|consensus 99.4 4.3E-13 9.2E-18 91.5 6.8 90 23-112 229-318 (479)
56 KOG0147|consensus 99.4 4.1E-13 8.9E-18 95.5 6.6 79 34-112 279-357 (549)
57 KOG0146|consensus 99.4 3.5E-13 7.7E-18 89.0 5.6 86 29-114 281-366 (371)
58 KOG0131|consensus 99.4 5.5E-13 1.2E-17 83.4 5.6 84 30-113 93-177 (203)
59 KOG0146|consensus 99.4 9.1E-13 2E-17 87.1 6.2 85 30-115 16-103 (371)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.3 2.3E-11 4.9E-16 88.3 9.9 74 30-110 172-257 (509)
61 KOG4208|consensus 99.3 1.3E-11 2.9E-16 78.6 7.3 81 32-112 48-129 (214)
62 KOG4206|consensus 99.3 1.5E-11 3.2E-16 79.3 7.6 79 33-114 9-91 (221)
63 KOG0132|consensus 99.3 1.3E-11 2.7E-16 91.1 7.6 78 32-115 420-497 (894)
64 KOG4212|consensus 99.3 1.8E-11 3.9E-16 85.7 7.7 79 32-111 43-122 (608)
65 KOG0123|consensus 99.2 7.7E-11 1.7E-15 82.6 8.3 74 36-112 79-152 (369)
66 KOG0153|consensus 99.2 9.9E-11 2.1E-15 79.7 8.5 77 30-112 225-302 (377)
67 KOG0110|consensus 99.2 1.2E-11 2.6E-16 90.4 4.3 82 32-113 612-693 (725)
68 KOG0124|consensus 99.2 5.3E-11 1.1E-15 81.9 6.9 78 34-111 211-288 (544)
69 PF04059 RRM_2: RNA recognitio 99.2 2.7E-10 5.8E-15 65.5 8.8 82 34-115 2-89 (97)
70 KOG4661|consensus 99.1 1.7E-10 3.8E-15 83.2 7.3 81 32-112 404-484 (940)
71 KOG0123|consensus 99.1 2.7E-10 5.8E-15 79.9 8.1 74 35-114 3-76 (369)
72 KOG0109|consensus 99.1 1.9E-10 4.1E-15 76.9 5.8 75 31-113 76-150 (346)
73 KOG0151|consensus 99.1 7.3E-10 1.6E-14 81.5 8.5 82 31-112 172-256 (877)
74 KOG4212|consensus 99.1 3.6E-10 7.9E-15 79.3 6.5 76 30-110 533-608 (608)
75 KOG4205|consensus 99.0 4.2E-10 9.1E-15 76.9 4.9 81 32-113 5-85 (311)
76 KOG0110|consensus 99.0 2.4E-09 5.2E-14 78.6 8.3 77 35-111 517-596 (725)
77 KOG0116|consensus 99.0 2.5E-09 5.4E-14 75.7 7.9 80 32-112 287-366 (419)
78 KOG0533|consensus 99.0 4.7E-09 1E-13 69.4 8.5 80 32-112 82-161 (243)
79 KOG1548|consensus 98.9 1.5E-08 3.3E-13 69.2 8.8 81 31-112 132-220 (382)
80 KOG0106|consensus 98.9 2.4E-09 5.2E-14 69.5 3.9 70 35-112 3-72 (216)
81 KOG4205|consensus 98.9 9.3E-09 2E-13 70.4 6.9 81 32-113 96-176 (311)
82 KOG4209|consensus 98.9 9.7E-09 2.1E-13 67.9 6.6 80 31-111 99-178 (231)
83 KOG4660|consensus 98.9 2.1E-09 4.5E-14 77.1 3.5 72 30-106 72-143 (549)
84 KOG4454|consensus 98.8 1.3E-09 2.7E-14 70.4 1.8 79 30-110 6-84 (267)
85 KOG0226|consensus 98.8 4.6E-09 9.9E-14 69.2 4.2 80 30-109 187-266 (290)
86 KOG4211|consensus 98.8 2.8E-08 6E-13 70.6 7.9 77 30-110 7-83 (510)
87 KOG1190|consensus 98.5 6.8E-07 1.5E-11 62.6 8.4 74 33-111 297-371 (492)
88 KOG0120|consensus 98.5 1.2E-07 2.5E-12 68.4 4.5 84 30-113 286-369 (500)
89 KOG1995|consensus 98.4 7.1E-07 1.5E-11 61.4 5.8 85 29-113 62-154 (351)
90 KOG1457|consensus 98.4 4.4E-07 9.5E-12 59.1 4.1 67 31-101 208-274 (284)
91 KOG4211|consensus 98.4 2.1E-06 4.5E-11 61.4 7.1 77 31-109 101-178 (510)
92 KOG4206|consensus 98.3 7.4E-06 1.6E-10 53.3 7.8 78 29-111 142-220 (221)
93 KOG0147|consensus 98.3 3.3E-07 7.2E-12 66.0 1.7 78 32-110 178-255 (549)
94 KOG1456|consensus 98.3 1.8E-05 3.9E-10 55.2 9.7 81 28-113 282-363 (494)
95 KOG4210|consensus 98.2 1.6E-06 3.5E-11 59.1 3.5 84 32-116 184-267 (285)
96 PF08777 RRM_3: RNA binding mo 98.2 1E-05 2.2E-10 47.4 6.2 59 33-97 1-59 (105)
97 PF11608 Limkain-b1: Limkain b 98.1 2E-05 4.4E-10 43.9 6.3 68 34-111 3-75 (90)
98 KOG4849|consensus 98.0 5.7E-06 1.2E-10 57.2 3.9 75 32-106 79-155 (498)
99 KOG0106|consensus 98.0 4E-06 8.6E-11 54.7 2.7 71 31-109 97-167 (216)
100 KOG4307|consensus 98.0 4E-05 8.6E-10 57.3 8.0 77 32-109 865-943 (944)
101 COG5175 MOT2 Transcriptional r 98.0 2.6E-05 5.7E-10 53.8 6.5 78 34-111 115-201 (480)
102 KOG1190|consensus 97.9 4.7E-05 1E-09 53.7 6.8 78 30-112 411-490 (492)
103 KOG0105|consensus 97.9 9.8E-05 2.1E-09 47.1 6.8 68 27-101 109-176 (241)
104 KOG3152|consensus 97.8 8.3E-06 1.8E-10 54.1 1.8 71 34-104 75-157 (278)
105 KOG0129|consensus 97.8 0.00016 3.4E-09 52.3 7.8 68 27-94 364-432 (520)
106 KOG2314|consensus 97.7 0.00034 7.3E-09 51.4 8.5 77 31-108 56-139 (698)
107 PF08952 DUF1866: Domain of un 97.7 0.00039 8.4E-09 42.8 7.6 76 30-114 24-108 (146)
108 KOG1456|consensus 97.7 0.00065 1.4E-08 47.7 9.4 82 28-114 115-200 (494)
109 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.0003 6.5E-09 40.8 6.6 78 32-111 5-90 (100)
110 KOG1365|consensus 97.7 0.00011 2.3E-09 51.6 5.0 76 34-110 281-359 (508)
111 KOG0129|consensus 97.6 0.00068 1.5E-08 49.1 9.0 65 30-95 256-326 (520)
112 KOG2193|consensus 97.6 3.7E-05 8E-10 54.5 2.6 76 35-116 3-79 (584)
113 KOG1548|consensus 97.6 0.00052 1.1E-08 47.6 7.7 79 29-111 261-350 (382)
114 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0003 6.6E-09 36.0 5.0 52 34-92 2-53 (53)
115 PF08675 RNA_bind: RNA binding 97.6 0.0011 2.5E-08 36.9 7.3 57 31-96 7-63 (87)
116 KOG1365|consensus 97.5 0.00017 3.7E-09 50.6 4.5 72 32-105 160-235 (508)
117 KOG0120|consensus 97.5 0.00064 1.4E-08 49.6 7.5 64 49-112 425-491 (500)
118 KOG0112|consensus 97.5 0.0002 4.3E-09 54.9 4.5 77 31-113 453-531 (975)
119 KOG2202|consensus 97.3 9.1E-05 2E-09 49.2 1.0 63 48-111 83-146 (260)
120 KOG2416|consensus 97.3 0.00029 6.2E-09 52.0 3.6 80 26-111 437-520 (718)
121 KOG1855|consensus 97.2 0.00064 1.4E-08 48.4 4.1 67 31-97 229-308 (484)
122 KOG4307|consensus 97.2 0.00058 1.3E-08 51.4 3.9 85 24-109 425-510 (944)
123 KOG1996|consensus 96.9 0.0055 1.2E-07 41.9 6.6 64 48-111 301-365 (378)
124 KOG4660|consensus 96.9 0.0019 4.1E-08 47.3 4.5 59 57-115 413-475 (549)
125 KOG4676|consensus 96.7 0.0037 8.1E-08 44.2 4.8 73 35-108 9-84 (479)
126 PF10309 DUF2414: Protein of u 96.7 0.016 3.5E-07 30.6 6.0 54 34-95 6-62 (62)
127 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.012 2.6E-07 37.6 6.1 81 31-111 5-96 (176)
128 KOG0128|consensus 96.5 0.0014 3.1E-08 50.1 1.6 78 33-111 736-813 (881)
129 KOG2068|consensus 96.4 0.0016 3.4E-08 45.0 1.2 79 34-112 78-162 (327)
130 KOG0128|consensus 96.3 0.00014 2.9E-09 55.4 -4.4 68 34-101 668-735 (881)
131 KOG0115|consensus 96.1 0.01 2.2E-07 39.8 3.8 63 34-97 32-94 (275)
132 PF04847 Calcipressin: Calcipr 95.7 0.05 1.1E-06 35.1 5.8 61 46-112 8-70 (184)
133 KOG0112|consensus 95.7 0.0018 3.8E-08 50.0 -1.2 78 32-110 371-448 (975)
134 PF15023 DUF4523: Protein of u 95.6 0.11 2.4E-06 32.1 6.6 73 30-110 83-159 (166)
135 KOG2591|consensus 95.6 0.039 8.4E-07 41.0 5.4 67 32-105 174-244 (684)
136 PF07576 BRAP2: BRCA1-associat 95.5 0.25 5.5E-06 29.1 8.9 68 32-101 11-80 (110)
137 PF11767 SET_assoc: Histone ly 95.4 0.18 4E-06 26.9 6.7 54 45-107 12-65 (66)
138 KOG2253|consensus 95.1 0.026 5.6E-07 42.5 3.3 80 20-108 27-106 (668)
139 KOG2135|consensus 94.9 0.019 4.2E-07 41.6 2.2 74 32-112 371-445 (526)
140 KOG4285|consensus 94.5 0.21 4.7E-06 34.5 6.2 71 33-111 197-268 (350)
141 KOG4410|consensus 93.8 0.26 5.6E-06 33.9 5.5 50 31-86 328-378 (396)
142 KOG0804|consensus 92.7 0.95 2.1E-05 33.1 7.1 67 32-101 73-141 (493)
143 KOG4210|consensus 91.9 0.17 3.7E-06 34.9 2.7 76 31-106 86-161 (285)
144 PF03880 DbpA: DbpA RNA bindin 91.9 1.2 2.6E-05 24.1 5.8 58 44-110 12-74 (74)
145 KOG4483|consensus 89.4 2 4.3E-05 31.1 6.2 58 30-94 388-446 (528)
146 KOG4574|consensus 86.5 0.66 1.4E-05 36.5 2.6 72 35-112 300-373 (1007)
147 KOG2318|consensus 81.3 19 0.00042 27.6 8.1 80 30-109 171-304 (650)
148 KOG4676|consensus 80.9 0.14 3E-06 36.6 -2.7 65 32-101 150-214 (479)
149 PRK11901 hypothetical protein; 71.0 23 0.00049 25.1 5.9 64 30-97 242-306 (327)
150 KOG2295|consensus 70.7 0.52 1.1E-05 35.3 -2.1 71 33-103 231-301 (648)
151 PF07530 PRE_C2HC: Associated 65.5 16 0.00035 19.5 3.5 63 48-113 2-65 (68)
152 KOG2193|consensus 63.7 0.14 3.1E-06 37.0 -5.9 74 32-109 79-153 (584)
153 PF15513 DUF4651: Domain of un 63.2 20 0.00043 18.9 3.4 19 48-66 9-27 (62)
154 smart00596 PRE_C2HC PRE_C2HC d 62.5 15 0.00033 19.8 3.0 61 48-111 2-63 (69)
155 KOG4019|consensus 60.5 8.5 0.00018 24.9 2.1 73 34-112 11-89 (193)
156 COG0724 RNA-binding proteins ( 54.5 28 0.0006 22.5 4.0 40 29-68 221-260 (306)
157 KOG4454|consensus 53.6 2.7 5.8E-05 28.1 -1.0 67 32-99 79-149 (267)
158 PF07292 NID: Nmi/IFP 35 domai 52.6 13 0.00027 21.1 1.8 25 31-55 50-74 (88)
159 PF15063 TC1: Thyroid cancer p 51.1 10 0.00022 20.9 1.1 31 30-60 22-52 (79)
160 KOG1295|consensus 47.3 45 0.00099 24.2 4.2 70 32-101 6-78 (376)
161 PF03439 Spt5-NGN: Early trans 45.9 41 0.00089 18.6 3.2 26 74-99 43-68 (84)
162 PF03468 XS: XS domain; Inter 43.5 70 0.0015 19.0 4.8 45 46-93 30-75 (116)
163 KOG0156|consensus 43.0 61 0.0013 24.4 4.5 59 37-105 36-97 (489)
164 PF14893 PNMA: PNMA 41.2 19 0.0004 25.6 1.6 26 31-56 16-41 (331)
165 PF09707 Cas_Cas2CT1978: CRISP 39.2 73 0.0016 18.0 3.5 48 33-83 25-72 (86)
166 PF10567 Nab6_mRNP_bdg: RNA-re 38.6 1E+02 0.0022 21.7 4.7 79 33-111 15-106 (309)
167 COG5193 LHP1 La protein, small 37.1 18 0.0004 26.4 1.0 60 34-93 175-244 (438)
168 KOG4008|consensus 36.0 29 0.00063 23.6 1.7 34 28-61 35-68 (261)
169 PRK10905 cell division protein 35.1 1.1E+02 0.0023 21.9 4.4 62 32-97 246-308 (328)
170 PRK11558 putative ssRNA endonu 33.0 88 0.0019 18.1 3.2 49 33-84 27-75 (97)
171 PF15407 Spo7_2_N: Sporulation 32.6 17 0.00037 19.5 0.2 18 31-48 25-42 (67)
172 cd00027 BRCT Breast Cancer Sup 31.3 72 0.0016 15.6 2.8 27 34-60 2-28 (72)
173 KOG4213|consensus 29.8 88 0.0019 20.4 3.1 55 34-94 112-169 (205)
174 COG0030 KsgA Dimethyladenosine 29.0 93 0.002 21.4 3.3 28 33-60 95-122 (259)
175 PF11823 DUF3343: Protein of u 27.9 1E+02 0.0023 16.3 2.9 24 77-100 3-26 (73)
176 KOG4365|consensus 25.8 11 0.00025 27.8 -1.5 75 35-110 5-79 (572)
177 PF13046 DUF3906: Protein of u 25.5 1.2E+02 0.0026 16.1 2.8 32 47-80 32-63 (64)
178 PF02714 DUF221: Domain of unk 25.3 1E+02 0.0022 21.4 3.1 20 78-97 1-20 (325)
179 PF02946 GTF2I: GTF2I-like rep 25.1 1.2E+02 0.0027 16.7 2.8 28 35-62 36-71 (76)
180 PF00054 Laminin_G_1: Laminin 23.6 34 0.00073 20.4 0.4 12 31-42 90-101 (131)
181 PF14111 DUF4283: Domain of un 22.5 49 0.0011 20.0 1.0 31 36-66 107-138 (153)
182 PRK11230 glycolate oxidase sub 21.7 3.6E+02 0.0079 20.4 7.5 64 32-96 188-255 (499)
183 PF11411 DNA_ligase_IV: DNA li 21.3 66 0.0014 15.0 1.1 16 43-58 19-34 (36)
184 TIGR00405 L26e_arch ribosomal 21.1 1.3E+02 0.0029 18.3 2.7 26 73-98 36-61 (145)
185 PF00398 RrnaAD: Ribosomal RNA 20.2 1.2E+02 0.0025 20.6 2.5 24 32-55 96-119 (262)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=1.7e-20 Score=115.59 Aligned_cols=85 Identities=29% Similarity=0.463 Sum_probs=80.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
...+++|||+|||+++++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|+..+++..+.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=1.3e-19 Score=125.76 Aligned_cols=85 Identities=78% Similarity=1.359 Sum_probs=80.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..++.|||+|||..+++++|.++|++||.|..++++.++.++.++|||||+|.+.++|..|+..|||..++|+.|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 44568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCCCC
Q psy13319 111 TNKGK 115 (117)
Q Consensus 111 ~~~~~ 115 (117)
..+.+
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88765
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.80 E-value=8.8e-19 Score=121.57 Aligned_cols=83 Identities=30% Similarity=0.489 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+..+|||+|||..+++++|+++|..||.|..++++.++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45789999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 643
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=2.1e-18 Score=119.43 Aligned_cols=85 Identities=28% Similarity=0.507 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
....+++|||+|||+++++++|+++|..||.|..++++.++.+++++|||||+|.+.++|++|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98753
No 5
>KOG0122|consensus
Probab=99.78 E-value=2.5e-18 Score=111.33 Aligned_cols=85 Identities=38% Similarity=0.555 Sum_probs=81.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.+++..+|.|.||+.+++|.+|+++|.+||.|..+.+.+++.||.++|||||.|.++++|.+|+..|+|.-+++-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99875
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=1.1e-17 Score=90.90 Aligned_cols=70 Identities=34% Similarity=0.685 Sum_probs=66.5
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 36 l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
|||+|||.++++++|+++|..||.+..+.+..+ .++..+++|||+|.+.++|+.|+..++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 6688899999999999999999999999999999886
No 7
>KOG0121|consensus
Probab=99.74 E-value=9.6e-18 Score=99.21 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..+++|||+||+..++|++|.++|+.+|.|..+.+-.++.+..++|||||+|.+.++|+.|++.++|..+..+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 36789999999999999999999999999999999999988899999999999999999999999999999999999874
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.73 E-value=2.1e-16 Score=86.13 Aligned_cols=70 Identities=33% Similarity=0.657 Sum_probs=64.4
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 36 l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
|||+|||+++++++|.++|..+|.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999999875
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.72 E-value=1.1e-16 Score=116.91 Aligned_cols=83 Identities=25% Similarity=0.401 Sum_probs=78.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
..++|||+|||.++++++|+++|+.||.|..+++..++.++.++|||||+|.+.++|..|+..+|+..++|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 45789999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
..+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.3e-16 Score=110.61 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=76.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN--RILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 109 (117)
...+|||+|||..+++++|+++|.+||.|..+.++.++.+++++|++||+|.+.++|++|++.|++..+.+ +.|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998899999999999999999999999999998865 6899999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+....+
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 876543
No 11
>KOG0117|consensus
Probab=99.71 E-value=1.7e-16 Score=110.19 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQVSF 109 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~ 109 (117)
+.++-||||.||.++.|++|.-+|.+.|.|.++++|.++.+|.++|||||.|.+.+.|++|++.||+..|. |+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 67889999999999999999999999999999999999999999999999999999999999999999886 88999987
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+-.
T Consensus 161 Sva 163 (506)
T KOG0117|consen 161 SVA 163 (506)
T ss_pred eee
Confidence 543
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.70 E-value=1.3e-16 Score=116.43 Aligned_cols=81 Identities=30% Similarity=0.484 Sum_probs=76.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||+.+++++|+++|..||.|..+.++.++.+++++|||||+|.+.++|++|++.++|..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred c
Q psy13319 111 T 111 (117)
Q Consensus 111 ~ 111 (117)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 13
>KOG0148|consensus
Probab=99.70 E-value=1e-16 Score=105.35 Aligned_cols=82 Identities=43% Similarity=0.737 Sum_probs=78.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
...+||+.|...++-++|++.|.+||+|+.+++++|..|++++||+||.|..+++|++|+..|+|.+|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q psy13319 113 KG 114 (117)
Q Consensus 113 ~~ 114 (117)
++
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 14
>KOG0149|consensus
Probab=99.68 E-value=1.1e-16 Score=103.32 Aligned_cols=78 Identities=31% Similarity=0.410 Sum_probs=71.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
-.+||||||+|.+..++|++.|..||+|.+..++.|+.+|+++||+||+|.+.++|++|++. ..-.|+||+..+..|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 35799999999999999999999999999999999999999999999999999999999996 4567899988777654
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=1.1e-15 Score=109.46 Aligned_cols=81 Identities=33% Similarity=0.619 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
..++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..+.|+.|+|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999999976
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=6.6e-16 Score=102.10 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.++|||+|||+.+++++|+++|+.||.|..+.+..++. .+|||||+|.+.++++.|+. |+|..+.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57899999999999999999999999999999988743 47899999999999999996 99999999999999876
No 17
>KOG0107|consensus
Probab=99.68 E-value=3.6e-16 Score=96.98 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=72.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....+.|||+||+..+++.+|+..|..||.+..+.+-.. +.|||||+|++..+|+.|+..|+|..+.|..|+|++
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 345788999999999999999999999999988866543 378999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++..++
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 886554
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=1e-15 Score=110.81 Aligned_cols=82 Identities=28% Similarity=0.391 Sum_probs=77.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+..++|||+|||..+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.+.|..|+..|+|..++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred cC
Q psy13319 111 TN 112 (117)
Q Consensus 111 ~~ 112 (117)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.68 E-value=5.2e-16 Score=113.69 Aligned_cols=78 Identities=33% Similarity=0.630 Sum_probs=74.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
+|||+|||.++++++|+++|..||.|..|++.++..+++++|||||+|.+.++|++|+..+++..+.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999998753
No 20
>KOG0113|consensus
Probab=99.67 E-value=1.4e-15 Score=101.12 Aligned_cols=87 Identities=24% Similarity=0.436 Sum_probs=80.7
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 26 ANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.....++=+||||+-|+.+++|..|++.|..||.|..|.++.+..||+++|||||+|....+...|.+..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 34445778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
.|.+-..
T Consensus 174 ~VDvERg 180 (335)
T KOG0113|consen 174 LVDVERG 180 (335)
T ss_pred EEEeccc
Confidence 9987543
No 21
>KOG0145|consensus
Probab=99.67 E-value=2.9e-15 Score=98.38 Aligned_cols=107 Identities=68% Similarity=1.156 Sum_probs=92.8
Q ss_pred cccCCCCccccccccC-CCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q psy13319 8 LQRFSPLTGDLLASSI-LPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYD 86 (117)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~ 86 (117)
.-+|+|++.+.+..-. ..-+.....++.|||-||.++++|..|.++|.+||.|..+++++|..+.+++||+||.+.+.+
T Consensus 252 ~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYd 331 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 331 (360)
T ss_pred hccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchH
Confidence 3478888877665433 233334456899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEeCCeEEEEEEecCCC
Q psy13319 87 EAVVAIQSLNGYALGNRILQVSFKTNKG 114 (117)
Q Consensus 87 ~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 114 (117)
+|..|+..|||..++++.|+|+|...+.
T Consensus 332 EAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 332 EAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHHHHHHHhcCccccceEEEEEEecCCC
Confidence 9999999999999999999999976653
No 22
>KOG0114|consensus
Probab=99.66 E-value=2.5e-15 Score=85.99 Aligned_cols=81 Identities=22% Similarity=0.428 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.++..+.|||.|||..++.++..++|.+||.|.++++-..+. .+|-|||.|++..+|..|+..|+|..+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 356678899999999999999999999999999999966543 48999999999999999999999999999999998
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
+-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7543
No 23
>KOG0130|consensus
Probab=99.66 E-value=5.3e-16 Score=92.71 Aligned_cols=89 Identities=27% Similarity=0.439 Sum_probs=81.9
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q psy13319 24 LPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR 103 (117)
Q Consensus 24 ~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 103 (117)
.+.+...-.++.|||.++...+++++|.+.|..||.|..+.+.+++.||..+||+.|+|.+.+.|++|+..+||..+.|+
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 34444445789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13319 104 ILQVSFKTN 112 (117)
Q Consensus 104 ~l~v~~a~~ 112 (117)
.|.|.|+.-
T Consensus 143 ~v~VDw~Fv 151 (170)
T KOG0130|consen 143 NVSVDWCFV 151 (170)
T ss_pred ceeEEEEEe
Confidence 999998763
No 24
>KOG0145|consensus
Probab=99.65 E-value=1.7e-15 Score=99.53 Aligned_cols=86 Identities=31% Similarity=0.506 Sum_probs=80.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+....|.|.=||...++++++.+|...|+|+.|++++|+-+|.+-||+||.|-+.++|++|+..|||..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34555679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
||++..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 999765
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=2.1e-15 Score=109.94 Aligned_cols=81 Identities=28% Similarity=0.494 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 108 (117)
.+.+++|||+|||++++|++|.++|..+|.|..++++.+ .++.++|||||+|.+.++|++|++.|++..+. ++.|.|+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 456789999999999999999999999999999999999 78999999999999999999999999998875 7777776
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
.+.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 553
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.64 E-value=2.9e-15 Score=109.81 Aligned_cols=82 Identities=33% Similarity=0.554 Sum_probs=77.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..+.+|||+||+..+++++|+++|+.||.|..++++.+ .+|.++|+|||+|.+.++|.+|+..++|..++|+.|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 45678999999999999999999999999999999998 67999999999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 764
No 27
>PLN03213 repressor of silencing 3; Provisional
Probab=99.64 E-value=1.9e-15 Score=106.69 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNY--DEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+.+||||||++.+++++|...|..||.|..+.++ +.+| ||||||+|... .++.+|+..|+|..|.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 345789999999999999999999999999999998 4466 99999999976 78999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
-|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 88753
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.64 E-value=4.2e-15 Score=106.47 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=75.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+.++|||+|||..+++++|+++|..+|.|..+.++.++.++.++|||||+|.+.++|.+|+. ++|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 356799999999999999999999999999999999999999999999999999999999997 8999999999999876
Q ss_pred cC
Q psy13319 111 TN 112 (117)
Q Consensus 111 ~~ 112 (117)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 29
>KOG0126|consensus
Probab=99.64 E-value=7.5e-17 Score=100.64 Aligned_cols=87 Identities=24% Similarity=0.435 Sum_probs=80.2
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 25 PANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 25 ~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
.......++.-|||||||+..+|.||...|+.||.+..+.+++++.||+++||||..|++....--|+..|||+.+.|+.
T Consensus 27 SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 27 SWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred chhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceeccee
Confidence 44455667888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEec
Q psy13319 105 LQVSFKT 111 (117)
Q Consensus 105 l~v~~a~ 111 (117)
|+|....
T Consensus 107 irVDHv~ 113 (219)
T KOG0126|consen 107 IRVDHVS 113 (219)
T ss_pred EEeeecc
Confidence 9998643
No 30
>KOG0108|consensus
Probab=99.63 E-value=1e-15 Score=108.04 Aligned_cols=81 Identities=36% Similarity=0.552 Sum_probs=78.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNK 113 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 113 (117)
+.+||||+|+++++++|..+|...|.|..++++.|+.+|+++||+|++|.+.+.+..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999997754
Q ss_pred C
Q psy13319 114 G 114 (117)
Q Consensus 114 ~ 114 (117)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.63 E-value=6.6e-15 Score=96.16 Aligned_cols=76 Identities=22% Similarity=0.364 Sum_probs=69.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
...+++|||+||++.+++++|+++|+.||.|..+.+.++. ...++|||+|.+.+.++.|+. |+|..|.++.|.|..
T Consensus 2 ~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 2 YPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 3567899999999999999999999999999999999883 445799999999999999996 899999999999875
No 32
>KOG0125|consensus
Probab=99.63 E-value=4.3e-15 Score=99.96 Aligned_cols=85 Identities=29% Similarity=0.395 Sum_probs=75.3
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 26 ANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.++..+..++|+|.|||....+.||+.+|.+||.|..|.++.+ ..-++|||||+|++.++|++|=..|||..+.||+|
T Consensus 89 ~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkI 166 (376)
T KOG0125|consen 89 NSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKI 166 (376)
T ss_pred cCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEE
Confidence 3344566788999999999999999999999999999988765 24459999999999999999999999999999999
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
+|..+..
T Consensus 167 EVn~ATa 173 (376)
T KOG0125|consen 167 EVNNATA 173 (376)
T ss_pred EEeccch
Confidence 9998764
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=8.5e-15 Score=79.03 Aligned_cols=72 Identities=44% Similarity=0.712 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
+|||+|||..+++++|.++|..+|.+..+.+..++ +.+++++||+|.+.+.|+.|+..+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999888775 6778999999999999999999999999999988763
No 34
>KOG4207|consensus
Probab=99.62 E-value=9.9e-16 Score=97.43 Aligned_cols=83 Identities=28% Similarity=0.381 Sum_probs=78.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+.-..|-|.||...++.++|..+|.+||.|-.|.+.+++.|+..+||+||.|....+|+.|+..|+|..++|+.|+|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
+-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 743
No 35
>KOG0111|consensus
Probab=99.62 E-value=4.7e-16 Score=99.86 Aligned_cols=84 Identities=30% Similarity=0.522 Sum_probs=80.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||++|-.++++.-|...|-+||+|..+.++.+..++++|||+||+|...++|-+|+..+|+..+.|+.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
++.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 36
>KOG0131|consensus
Probab=99.61 E-value=1.6e-15 Score=94.65 Aligned_cols=84 Identities=27% Similarity=0.393 Sum_probs=79.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+.+.+|||+||+..++++.|.++|-..|.|..+.+.+++-++..+||||++|.++++|+-|++.|+.+.+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
-+..
T Consensus 85 kas~ 88 (203)
T KOG0131|consen 85 KASA 88 (203)
T ss_pred eccc
Confidence 8763
No 37
>KOG0148|consensus
Probab=99.60 E-value=1.4e-14 Score=95.39 Aligned_cols=77 Identities=29% Similarity=0.577 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+++++||+||++.-.+++++++.|..||.|.++++..+ +||+||.|.+.+.|..|+..+|+..+.|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 357899999999999999999999999999999999877 78999999999999999999999999999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
.+.
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 774
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=94.43 Aligned_cols=79 Identities=38% Similarity=0.559 Sum_probs=76.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.++|||+|||..+++++|.++|..||.+..+.+..++.++..+|+|||+|.+.+.+..|+..+++..+.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999864
No 39
>smart00360 RRM RNA recognition motif.
Probab=99.59 E-value=1.7e-14 Score=77.56 Aligned_cols=71 Identities=42% Similarity=0.693 Sum_probs=65.9
Q ss_pred EeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 38 VYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 38 v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
|+|||..+++++|+++|..+|.+..+.+..++.++.++|+|||+|.+.+.|..|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999998887778889999999999999999999999999999988863
No 40
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.58 E-value=4.2e-14 Score=102.13 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.+++++|||+|||. .+++++|.++|..||.|..++++.++ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45778999999998 69999999999999999999998763 6899999999999999999999999999999999
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
+++.
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 9764
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.57 E-value=5e-14 Score=102.79 Aligned_cols=76 Identities=29% Similarity=0.474 Sum_probs=69.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPF--GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...++|||+||+.++++++|+++|..| |.|..+.++ ++||||+|.+.++|++|+..||+..+.|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345789999999999999999999999 999988664 4599999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
|+++..
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998753
No 42
>KOG0105|consensus
Probab=99.57 E-value=9e-15 Score=91.78 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..+++|||+|||.++.+.+|+++|.+||.|.++.+...+ ...+|+||+|++..+|+.|+..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 356789999999999999999999999999999886552 33679999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 754
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.56 E-value=4e-14 Score=102.21 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEeCCeEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL--NGYALGNRILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~ 109 (117)
++++|||+|||+.+++++|+++|+.||.|..+.++.+ +++|||+|.+.++|++|+..+ ++..+.|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4678999999999999999999999999999988754 579999999999999999865 67899999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 44
>KOG0144|consensus
Probab=99.56 E-value=4.3e-15 Score=103.03 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=75.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE-e--CCeEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA-L--GNRILQVS 108 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~--~g~~l~v~ 108 (117)
+.++|||+.|++.++|.+++++|.+||.|++|.++++.. +.+|||+||.|.+++-|..|++.|||.. + ...+|.|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478899999999999999999999999999999999864 8899999999999999999999999943 3 36799999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
||+.++.+
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99987654
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.56 E-value=1.1e-13 Score=75.06 Aligned_cols=74 Identities=46% Similarity=0.774 Sum_probs=67.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
+|+|+|||..+++++++++|+.+|.+..+.+..++.+ .+++++||+|.+.+.|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988877543 6689999999999999999999999999999998864
No 46
>KOG0144|consensus
Probab=99.55 E-value=2.6e-14 Score=99.24 Aligned_cols=84 Identities=29% Similarity=0.403 Sum_probs=75.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE-eC--CeEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA-LG--NRILQVS 108 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~--g~~l~v~ 108 (117)
+.-++||+-+|+.++|.||+++|++||.|.+|.+++|+.++.++|||||.|.++++|.+|+..|++.. +. ...|+|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 44579999999999999999999999999999999999999999999999999999999999998854 43 5689999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+|+..+.
T Consensus 113 ~Ad~E~e 119 (510)
T KOG0144|consen 113 YADGERE 119 (510)
T ss_pred ccchhhh
Confidence 9886544
No 47
>KOG0124|consensus
Probab=99.51 E-value=2.1e-14 Score=98.25 Aligned_cols=79 Identities=32% Similarity=0.532 Sum_probs=75.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
|++|||.+.+...|+.|+..|.+||.|..+.+.+|+-|++++||+||+|+-.+.|+-|++.+||..++|+.|+|....+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999986443
No 48
>KOG0117|consensus
Probab=99.49 E-value=1.1e-13 Score=96.44 Aligned_cols=75 Identities=32% Similarity=0.485 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.-+.|||+||+.+++++.|++.|..||.+..++-++| |+||+|..+++|.+|++.+||..+.|..|.|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4467999999999999999999999999999876654 99999999999999999999999999999999999
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
+.-
T Consensus 330 P~~ 332 (506)
T KOG0117|consen 330 PVD 332 (506)
T ss_pred Chh
Confidence 743
No 49
>KOG1457|consensus
Probab=99.47 E-value=1.9e-12 Score=83.57 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=84.0
Q ss_pred cccccccCCCCcccccccc-CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCC-CcceEEEEE
Q psy13319 4 INKGLQRFSPLTGDLLASS-ILPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTN-KCKGFGFVT 81 (117)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~~g~~fv~ 81 (117)
-.+++..+.+.......+. .......++.-++|||.+||.++...+|+.+|+.|-..+.+.+......+ ..+.++|+.
T Consensus 4 p~Pp~~s~~~~es~hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFat 83 (284)
T KOG1457|consen 4 PQPPFYSYQLHESPHSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFAT 83 (284)
T ss_pred CCCCccccccccCCCCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEE
Confidence 3445555555544422222 22234446678999999999999999999999999877777665543333 246899999
Q ss_pred eCCHHHHHHHHHHhCCcEeC---CeEEEEEEecCCCC
Q psy13319 82 MTNYDEAVVAIQSLNGYALG---NRILQVSFKTNKGK 115 (117)
Q Consensus 82 f~~~~~a~~a~~~l~~~~~~---g~~l~v~~a~~~~~ 115 (117)
|.+.+.|.+|+..|||+.++ +..|++++++.+.+
T Consensus 84 F~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK 120 (284)
T KOG1457|consen 84 FTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTK 120 (284)
T ss_pred ecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcc
Confidence 99999999999999999997 88999999887554
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.47 E-value=1.2e-12 Score=68.33 Aligned_cols=56 Identities=38% Similarity=0.748 Sum_probs=50.0
Q ss_pred HHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 50 LWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 50 l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
|.++|++||.|..+.+.... ++++||+|.+.++|+.|+..|+|..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999886552 579999999999999999999999999999999986
No 51
>KOG0127|consensus
Probab=99.46 E-value=5.8e-13 Score=94.98 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=76.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-----CC-cEeCC
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL-----NG-YALGN 102 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-----~~-~~~~g 102 (117)
....+.+|||+|||+++++++|.+.|+.||.+....++.++.|+.+.|.|||.|.+..++..|+... .| +.+.|
T Consensus 288 n~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 288 NITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred cccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 3456789999999999999999999999999999999999999999999999999999999999976 23 56889
Q ss_pred eEEEEEEecCC
Q psy13319 103 RILQVSFKTNK 113 (117)
Q Consensus 103 ~~l~v~~a~~~ 113 (117)
+.|.|..+-.+
T Consensus 368 R~Lkv~~Av~R 378 (678)
T KOG0127|consen 368 RLLKVTLAVTR 378 (678)
T ss_pred cEEeeeeccch
Confidence 99999876543
No 52
>KOG0109|consensus
Probab=99.44 E-value=2.4e-13 Score=90.48 Aligned_cols=74 Identities=31% Similarity=0.538 Sum_probs=69.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCCC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNKG 114 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 114 (117)
++||+|||..+++.+|+.+|++||+|.+|.++.+ |+||..++...++.++..|+|..|+|..|.|+-++++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5899999999999999999999999999999866 99999999999999999999999999999999988775
Q ss_pred CC
Q psy13319 115 KT 116 (117)
Q Consensus 115 ~~ 116 (117)
+.
T Consensus 76 k~ 77 (346)
T KOG0109|consen 76 KA 77 (346)
T ss_pred CC
Confidence 43
No 53
>KOG0127|consensus
Probab=99.44 E-value=7.4e-13 Score=94.45 Aligned_cols=81 Identities=26% Similarity=0.464 Sum_probs=74.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.++|.|+|||+.+...+|+.+|+.||.+..+.+++.+. |+-+|||||.|....+|..|++.+|+..++|++|.|.||-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 467899999999999999999999999999999987655 5556999999999999999999999999999999999976
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
++
T Consensus 195 ~K 196 (678)
T KOG0127|consen 195 DK 196 (678)
T ss_pred cc
Confidence 53
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.44 E-value=1.6e-12 Score=70.84 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=54.7
Q ss_pred HHHHHHhhc----CCCCeEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 47 ESVLWQLFG----PFGAVQSVK-VIRDLQT--NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 47 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
+++|+++|+ .||.+..+. +..++.+ +.++|++||.|.+.++|..|+..|+|..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999985 6666656 8889999999999999999999999999999998763
No 55
>KOG0415|consensus
Probab=99.43 E-value=4.3e-13 Score=91.52 Aligned_cols=90 Identities=26% Similarity=0.429 Sum_probs=83.5
Q ss_pred CCCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC
Q psy13319 23 ILPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN 102 (117)
Q Consensus 23 ~~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 102 (117)
..+.....++...|||..|.+.++.++|+-+|+.||.|..|.++++..||.+-.|+||+|.+.++++.|.-+|+++.|..
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 34556667788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecC
Q psy13319 103 RILQVSFKTN 112 (117)
Q Consensus 103 ~~l~v~~a~~ 112 (117)
++|+|.|+.+
T Consensus 309 rRIHVDFSQS 318 (479)
T KOG0415|consen 309 RRIHVDFSQS 318 (479)
T ss_pred ceEEeehhhh
Confidence 9999998654
No 56
>KOG0147|consensus
Probab=99.42 E-value=4.1e-13 Score=95.48 Aligned_cols=79 Identities=37% Similarity=0.685 Sum_probs=74.3
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
..+||+||..+++++++..+|.+||.|..+.++.+..||.++||+|++|.+.+.|+.|++.|||..+.|+.|+|+....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3399999999999999999999999999999999988999999999999999999999999999999999999987543
No 57
>KOG0146|consensus
Probab=99.42 E-value=3.5e-13 Score=89.00 Aligned_cols=86 Identities=40% Similarity=0.628 Sum_probs=80.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+++|+|||-.||.+....+|...|-.||.|...++..|+-|..+++|+||.|.+...++.|+..+||..|+-++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
..+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 877654
No 58
>KOG0131|consensus
Probab=99.41 E-value=5.5e-13 Score=83.42 Aligned_cols=84 Identities=39% Similarity=0.640 Sum_probs=76.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS-VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
-+.+.++||+||.+.++|..|.+.|+.||++.. ..+++++.||.++|++|+.|.+.+.+.+|+..++|..+.++++.|+
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 345688999999999999999999999999755 4888999999999999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
++..+
T Consensus 173 ya~k~ 177 (203)
T KOG0131|consen 173 YAFKK 177 (203)
T ss_pred EEEec
Confidence 97643
No 59
>KOG0146|consensus
Probab=99.39 E-value=9.1e-13 Score=87.07 Aligned_cols=85 Identities=29% Similarity=0.483 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE-eC--CeEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA-LG--NRILQ 106 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~--g~~l~ 106 (117)
..++++||||.|.+.-.|+|++++|+.||.+.+|.+++.+. |.++|++||.|.+..+|+.|+..|+|.. +. +..|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 34889999999999999999999999999999999988754 8889999999999999999999999954 33 56799
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.|++..+.
T Consensus 95 VK~ADTdkE 103 (371)
T KOG0146|consen 95 VKFADTDKE 103 (371)
T ss_pred EEeccchHH
Confidence 999887654
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.31 E-value=2.3e-11 Score=88.32 Aligned_cols=74 Identities=26% Similarity=0.412 Sum_probs=60.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCC------------CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPF------------GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
....++|||+|||..+++++|.++|..+ +.|..+.+ +..+|||||+|.+.++|..|+. |+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCC
Confidence 4467899999999999999999999864 22333333 3347899999999999999995 999
Q ss_pred cEeCCeEEEEEEe
Q psy13319 98 YALGNRILQVSFK 110 (117)
Q Consensus 98 ~~~~g~~l~v~~a 110 (117)
..+.|..|+|...
T Consensus 245 ~~~~g~~l~v~r~ 257 (509)
T TIGR01642 245 IIYSNVFLKIRRP 257 (509)
T ss_pred eEeeCceeEecCc
Confidence 9999999998743
No 61
>KOG4208|consensus
Probab=99.30 E-value=1.3e-11 Score=78.58 Aligned_cols=81 Identities=22% Similarity=0.401 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCC-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPF-GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..-.+|+..+|....+.++...|..+ |.+...++-+++.||.++|||||+|.+.+.|+-|.+.||+..+.++.|.+.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34468999999999999999999998 66788888899999999999999999999999999999999999999999874
Q ss_pred cC
Q psy13319 111 TN 112 (117)
Q Consensus 111 ~~ 112 (117)
.+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 62
>KOG4206|consensus
Probab=99.30 E-value=1.5e-11 Score=79.33 Aligned_cols=79 Identities=20% Similarity=0.478 Sum_probs=70.7
Q ss_pred CcEEEEeCCCCCCCHHHHHH----hhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 33 GWCIFVYNLAPETEESVLWQ----LFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+|||.||+..+..+++++ +|+.||.|..|.... +.+-+|-|||.|.+.+.|-.|++.|+|..+.|+.++++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 33999999999999988877 999999999886643 46779999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
||+.+.
T Consensus 86 yA~s~s 91 (221)
T KOG4206|consen 86 YAKSDS 91 (221)
T ss_pred cccCcc
Confidence 998754
No 63
>KOG0132|consensus
Probab=99.29 E-value=1.3e-11 Score=91.13 Aligned_cols=78 Identities=24% Similarity=0.473 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
-++|||||+|++.+++.+|..+|..||.|..+.+... +++|||.+..+++|++|+..|.++.+.++.|++.|+-
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3578999999999999999999999999999988655 7899999999999999999999999999999999987
Q ss_pred CCCC
Q psy13319 112 NKGK 115 (117)
Q Consensus 112 ~~~~ 115 (117)
..+-
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6553
No 64
>KOG4212|consensus
Probab=99.28 E-value=1.8e-11 Score=85.66 Aligned_cols=79 Identities=23% Similarity=0.346 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcC-CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGP-FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..+.+||.|+|+++.+++|++++.. .|.|..|.++.| .+|+.+|++.|+|.+++.+++|++.|+...+.|+.|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456999999999999999999995 899999999888 56999999999999999999999999999999999999754
Q ss_pred c
Q psy13319 111 T 111 (117)
Q Consensus 111 ~ 111 (117)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 3
No 65
>KOG0123|consensus
Probab=99.22 E-value=7.7e-11 Score=82.56 Aligned_cols=74 Identities=31% Similarity=0.531 Sum_probs=68.5
Q ss_pred EEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 36 l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
+||.||+++++..+|+++|..||.|..|++..+. +| .+|| ||+|.+.+.|++|+..+||..+.++.|-|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 9999999999999999999999999999999884 35 7899 9999999999999999999999999999876543
No 66
>KOG0153|consensus
Probab=99.22 E-value=9.9e-11 Score=79.70 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL-NGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 108 (117)
+....+|||++|...+++.+|.++|.+||+|..+.++.. +++|||+|.++++|+.|.... +...+.|.+|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 445678999999999999999999999999999988765 559999999999999988865 4456889999999
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
|..+
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9887
No 67
>KOG0110|consensus
Probab=99.22 E-value=1.2e-11 Score=90.36 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=75.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
....|.|+|+|..++-.+++++|..||++..++++.-...+.++|||||.|-+..+|.+|+..|.+..++|++|.++|++
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35689999999999999999999999999999998765556779999999999999999999999999999999999987
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
..
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 53
No 68
>KOG0124|consensus
Probab=99.21 E-value=5.3e-11 Score=81.86 Aligned_cols=78 Identities=27% Similarity=0.455 Sum_probs=73.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.+|||..+.++.+++||+..|..||.|..|.+-+.+..+.++||+|++|.+.+....|+..+|-..++|+.|+|..+-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 579999999999999999999999999999999999888899999999999999999999999999999999997654
No 69
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.21 E-value=2.7e-10 Score=65.48 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=72.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcC--CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC----CeEEEE
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGP--FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG----NRILQV 107 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 107 (117)
+||.|+|+|...+.++|.+++.. .|....+.++.|..++.+.|||||.|.+.+.+..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999888875 477888999999999999999999999999999999999998775 567899
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.||+-+++
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99886654
No 70
>KOG4661|consensus
Probab=99.15 E-value=1.7e-10 Score=83.25 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
-++.|||.+|...+...+|+.+|++||+|.-.+++.+-.+.-.++|+||++.+..+|.+||..|+...+.|+.|.|.-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 56789999999999999999999999999998888776666679999999999999999999999999999999999877
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
+
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 5
No 71
>KOG0123|consensus
Probab=99.14 E-value=2.7e-10 Score=79.86 Aligned_cols=74 Identities=26% Similarity=0.499 Sum_probs=68.6
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCCC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNKG 114 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 114 (117)
.|||| +++++..|.++|..+|.+..+++.++. | +-|||||+|.+..+|++|+..+|...+.|+++++-|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58998 899999999999999999999999997 5 89999999999999999999999999999999999976543
No 72
>KOG0109|consensus
Probab=99.11 E-value=1.9e-10 Score=76.89 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=69.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
....+++|+|+.+.++.++++..|.+||.+.+|.++.+ |+||.|.-.++|..|++.|++..+.|++++|+.+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 45678999999999999999999999999999999865 9999999999999999999999999999999987
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
..+
T Consensus 148 tsr 150 (346)
T KOG0109|consen 148 TSR 150 (346)
T ss_pred ccc
Confidence 754
No 73
>KOG0151|consensus
Probab=99.09 E-value=7.3e-10 Score=81.45 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=72.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQT---NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
+....+||+||++.++++.|...|..||.+..++++..+.. ...+-++||.|.++.++++|++.|+|+.+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 34567999999999999999999999999999998877533 244679999999999999999999999999999999
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
.|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99853
No 74
>KOG4212|consensus
Probab=99.08 E-value=3.6e-10 Score=79.29 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|+|+|||.+++++.|++-|..+|.+....++.. |+.+| .|.|.+.++|++|+..++|..+.|+.|.|.|
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 346678999999999999999999999999988877543 76665 8999999999999999999999999999987
Q ss_pred e
Q psy13319 110 K 110 (117)
Q Consensus 110 a 110 (117)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 75
>KOG4205|consensus
Probab=99.02 E-value=4.2e-10 Score=76.94 Aligned_cols=81 Identities=27% Similarity=0.425 Sum_probs=71.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.+++||++|+++++++.|++.|..||.+.+|.+++++.++..+||+||+|.+.+...+++.. ....+.|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678899999999999999999999999999999999999999999999999988888888763 4567888888777655
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
++
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 43
No 76
>KOG0110|consensus
Probab=99.00 E-value=2.4e-09 Score=78.63 Aligned_cols=77 Identities=29% Similarity=0.429 Sum_probs=67.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTN---KCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+|||.||+++++.+++...|...|.|..+.+...+... .+.|||||+|.+.+.|+.|++.|+|..++|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 39999999999999999999999999888776554321 234999999999999999999999999999999999877
No 77
>KOG0116|consensus
Probab=98.99 E-value=2.5e-09 Score=75.73 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
...+|||+|||.+++..+|+++|..||.|....+.....-++..+|+||+|.+..+++.++.. +...+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 556699999999999999999999999998887766532344449999999999999999995 6888999999998644
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 3
No 78
>KOG0533|consensus
Probab=98.99 E-value=4.7e-09 Score=69.44 Aligned_cols=80 Identities=26% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
...+|+|.|||..+.+.||+++|..||.+..+.+..+ .+|.+.|.|-|.|...++|.++++.++++.++|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3467999999999999999999999998877777666 468899999999999999999999999999999999887654
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 3
No 79
>KOG1548|consensus
Probab=98.91 E-value=1.5e-08 Score=69.24 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQ--------SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN 102 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 102 (117)
..+..|||.|||.+++.+++.++|+++|.|. .|++-++.. |..+|-+.+.|...++..-|+..|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3456699999999999999999999999763 366767644 8999999999999999999999999999999
Q ss_pred eEEEEEEecC
Q psy13319 103 RILQVSFKTN 112 (117)
Q Consensus 103 ~~l~v~~a~~ 112 (117)
..|+|+.|+-
T Consensus 211 ~~~rVerAkf 220 (382)
T KOG1548|consen 211 KKLRVERAKF 220 (382)
T ss_pred cEEEEehhhh
Confidence 9999998764
No 80
>KOG0106|consensus
Probab=98.87 E-value=2.4e-09 Score=69.52 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=64.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
.+||++||+.+.+.+++.+|..||++..+.+. .||+||+|.+..+|..|+..+++..+.+-.+.+.++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 58999999999999999999999999888664 45889999999999999999999999988899999874
No 81
>KOG4205|consensus
Probab=98.87 E-value=9.3e-09 Score=70.42 Aligned_cols=81 Identities=28% Similarity=0.365 Sum_probs=73.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
....+||++||.++++.++++.|..||.|..+.++.+..+.+.++|+||.|.+.+....++. ..-..+.++.+.|.-|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 34589999999999999999999999999999999999999999999999999999999877 36688999999998766
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
++
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 54
No 82
>KOG4209|consensus
Probab=98.86 E-value=9.7e-09 Score=67.85 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+...+||+|+...++.+++...|+.||.+..+.++.++.++.++|++||+|.+.+..+.++. |++..+.|+.+.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 456779999999999988899999999999989899999888899999999999999999999 9999999999999875
Q ss_pred c
Q psy13319 111 T 111 (117)
Q Consensus 111 ~ 111 (117)
+
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 83
>KOG4660|consensus
Probab=98.86 E-value=2.1e-09 Score=77.07 Aligned_cols=72 Identities=19% Similarity=0.432 Sum_probs=64.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.....+|+|-|||..+++++|.++|..||+|..++.- -..+|..||+|.+..+|++|++.|++..+.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4467789999999999999999999999999886543 33478999999999999999999999999998887
No 84
>KOG4454|consensus
Probab=98.84 E-value=1.3e-09 Score=70.44 Aligned_cols=79 Identities=24% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+.+++|||+|+...++|+-|.++|-..|.|.++.+...+. +..+ |+||.|.++....-|++.+||..+.++.+++.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 46688999999999999999999999999999998877754 5556 999999999999999999999999999888876
Q ss_pred e
Q psy13319 110 K 110 (117)
Q Consensus 110 a 110 (117)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 3
No 85
>KOG0226|consensus
Probab=98.83 E-value=4.6e-09 Score=69.16 Aligned_cols=80 Identities=34% Similarity=0.556 Sum_probs=73.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+++.+||.+.|.-+++.+.+-+.|.+|-....-++++++.||+++||+||-|.+..++.+|++.++|..++++.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45788999999999999999999999998877788899999999999999999999999999999999999999988754
No 86
>KOG4211|consensus
Probab=98.82 E-value=2.8e-08 Score=70.63 Aligned_cols=77 Identities=14% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+....|.+++|||++++++|.+||..++ |..+.+. +.+|++.|-|||+|.+.++++.|+++ +...+..+.|.|--
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 45566788999999999999999999987 6665444 45799999999999999999999995 78888888888865
Q ss_pred e
Q psy13319 110 K 110 (117)
Q Consensus 110 a 110 (117)
+
T Consensus 83 ~ 83 (510)
T KOG4211|consen 83 A 83 (510)
T ss_pred c
Confidence 4
No 87
>KOG1190|consensus
Probab=98.55 E-value=6.8e-07 Score=62.62 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+..|.|.||..+ ++.+.|..+|..||.|.+++++..+. .-+.|+|.+...|+-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578899999877 89999999999999999999987753 479999999999999999999999999999999876
No 88
>KOG0120|consensus
Probab=98.54 E-value=1.2e-07 Score=68.42 Aligned_cols=84 Identities=29% Similarity=0.383 Sum_probs=76.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
......+||++||...++.++.+++..||.+....++.+..+|.++||+|.+|.+......|+..|||..+++..|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34566799999999999999999999999999999999988899999999999999999999999999999999999987
Q ss_pred ecCC
Q psy13319 110 KTNK 113 (117)
Q Consensus 110 a~~~ 113 (117)
|...
T Consensus 366 A~~g 369 (500)
T KOG0120|consen 366 AIVG 369 (500)
T ss_pred hhcc
Confidence 6643
No 89
>KOG1995|consensus
Probab=98.42 E-value=7.1e-07 Score=61.42 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQ--------SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
......++||.++|..++++++.++|..+|.|. .+.+-.++.|+..++-+.|.|.+...|+.|+..+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345667899999999999999999999999762 345667778999999999999999999999999999999
Q ss_pred CCeEEEEEEecCC
Q psy13319 101 GNRILQVSFKTNK 113 (117)
Q Consensus 101 ~g~~l~v~~a~~~ 113 (117)
.++.|+|..+..+
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 9999999887643
No 90
>KOG1457|consensus
Probab=98.40 E-value=4.4e-07 Score=59.10 Aligned_cols=67 Identities=22% Similarity=0.342 Sum_probs=56.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
....++||.||..+++|++|+.+|..|.....+++... .| -.++|++|++.+.|..|+..|+|..+.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 45668999999999999999999999988776666432 23 458999999999999999999997654
No 91
>KOG4211|consensus
Probab=98.36 E-value=2.1e-06 Score=61.36 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQS-VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+..|.+++||+.+++++|.+||+..--+.. +.++.++ .+++.|-+||+|.+.+.++.|+.. +.-.|+.+-|.|-.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35678999999999999999999998765544 4445443 477889999999999999999985 66678888787754
No 92
>KOG4206|consensus
Probab=98.28 E-value=7.4e-06 Score=53.30 Aligned_cols=78 Identities=26% Similarity=0.481 Sum_probs=67.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQV 107 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v 107 (117)
..++..++++.|||..++.+.+..+|..|....+++++... .+.+||+|.+...+..|...+++..+. ...+++
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35678899999999999999999999999988888887543 569999999999999999999998877 778888
Q ss_pred EEec
Q psy13319 108 SFKT 111 (117)
Q Consensus 108 ~~a~ 111 (117)
.+++
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8764
No 93
>KOG0147|consensus
Probab=98.28 E-value=3.3e-07 Score=66.00 Aligned_cols=78 Identities=24% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+-+++|+-.+.....+.+|+++|..+|.|..++++.++.++..+|.+||+|.+.+....|+. |.|..+.|.+|.|...
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 55788888999999999999999999999999999999999999999999999999999986 8999999999988753
No 94
>KOG1456|consensus
Probab=98.26 E-value=1.8e-05 Score=55.25 Aligned_cols=81 Identities=25% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 28 TMNGSGWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.-..+++.++|.+|... .+.+.+..+|--||.|..++++..+ .|-+.|++.+..+.++++..||+..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34567899999999887 6778899999999999999999875 46899999999999999999999999999999
Q ss_pred EEEecCC
Q psy13319 107 VSFKTNK 113 (117)
Q Consensus 107 v~~a~~~ 113 (117)
|++++..
T Consensus 357 v~~SkQ~ 363 (494)
T KOG1456|consen 357 VCVSKQN 363 (494)
T ss_pred Eeecccc
Confidence 9987753
No 95
>KOG4210|consensus
Probab=98.20 E-value=1.6e-06 Score=59.13 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=74.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.....+|++++..+++++|+..|..+|.+..+++..++.++...|++|+.|.....+..++.. +...+.++.+.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 334444999999999999999999999999999999999999999999999999999999886 7888999999999877
Q ss_pred CCCCC
Q psy13319 112 NKGKT 116 (117)
Q Consensus 112 ~~~~~ 116 (117)
+.+..
T Consensus 263 ~~~~~ 267 (285)
T KOG4210|consen 263 PRPKS 267 (285)
T ss_pred CCccc
Confidence 76543
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=1e-05 Score=47.37 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=37.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
++.|++.+++..++.++|++.|+.+|.|..|.+... ..-|||.|.+.+.|+.++..+..
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHH
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHh
Confidence 467899999999999999999999999988877543 33799999999999999887643
No 97
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.12 E-value=2e-05 Score=43.89 Aligned_cols=68 Identities=26% Similarity=0.300 Sum_probs=46.2
Q ss_pred cEEEEeCCCCCCCHHHH----HHhhcCCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 34 WCIFVYNLAPETEESVL----WQLFGPFGA-VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l----~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..|+|.|||.+.+...| ++++..+|. +..+ . .+.|++.|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 35899999999887654 456667764 4433 1 3479999999999999999999999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 864
No 98
>KOG4849|consensus
Probab=98.05 E-value=5.7e-06 Score=57.21 Aligned_cols=75 Identities=15% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFG--AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
....+|||||-|+++.+||.+.+...| ++..+++..++.+|.++||+.+...+..+.+..++.|....+.|+.-.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 445699999999999999999999766 567778888889999999999999999999999999988888876433
No 99
>KOG0106|consensus
Probab=98.03 E-value=4e-06 Score=54.71 Aligned_cols=71 Identities=27% Similarity=0.385 Sum_probs=61.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
...+.+.|.+++..+.+++|.+.|..+|.+..... ..+.+||+|...+++..|+..+++..+.++.|.+..
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 35678999999999999999999999999843322 255899999999999999999999999999998843
No 100
>KOG4307|consensus
Probab=98.02 E-value=4e-05 Score=57.30 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=64.6
Q ss_pred CCc-EEEEeCCCCCCCHHHHHHhhcCCCCe-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 32 SGW-CIFVYNLAPETEESVLWQLFGPFGAV-QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 32 ~~~-~l~v~~Lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++ .|-+.|+|++++-+||.+||..|-.+ ..+.+ +..+.|+..|-|.|.|++.++|++|...+++..|.++.+.+..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~-r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRI-RRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeE-eecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 444 78899999999999999999999765 33333 3345699999999999999999999999999999999887753
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=2.6e-05 Score=53.83 Aligned_cols=78 Identities=19% Similarity=0.434 Sum_probs=59.2
Q ss_pred cEEEEeCCCCCCCHHH----H--HHhhcCCCCeEEEEEEecCCCC-Ccce--EEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 34 WCIFVYNLAPETEESV----L--WQLFGPFGAVQSVKVIRDLQTN-KCKG--FGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~----l--~~~f~~~g~i~~~~~~~~~~~~-~~~g--~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
.-+||-+||+.+..++ | .++|..||.|..+.+.....+- ...+ ..|+.|.+.++|.+++...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999998865543 2 3789999999988664332111 1122 3499999999999999999999999999
Q ss_pred EEEEEec
Q psy13319 105 LQVSFKT 111 (117)
Q Consensus 105 l~v~~a~ 111 (117)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998854
No 102
>KOG1190|consensus
Probab=97.94 E-value=4.7e-05 Score=53.70 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=64.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCe-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAV-QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v 107 (117)
.+++.++++.|+|.+++|++++..|..-|.. ...++- ++.+-++++.+.+.++|-.|+..++...++ +..++|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 4677899999999999999999999987754 333332 333569999999999999999999998887 558999
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
+|++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99875
No 103
>KOG0105|consensus
Probab=97.87 E-value=9.8e-05 Score=47.11 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=58.5
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
.+.+.....|.|.+||+..++++|++++.+.|.++...+.++ |++.|+|...++.+-|+..|....+.
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 344556678999999999999999999999999999888766 37999999999999999999876554
No 104
>KOG3152|consensus
Probab=97.85 E-value=8.3e-06 Score=54.07 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=59.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCC--------C----CcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQT--------N----KCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--------~----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
-.||++++|+..+..-++++|..||.|-.+.+.....+ | ....-|+|+|.+...|..+...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999998887655443 2 22345789999999999999999999998
Q ss_pred CeE
Q psy13319 102 NRI 104 (117)
Q Consensus 102 g~~ 104 (117)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 764
No 105
>KOG0129|consensus
Probab=97.81 E-value=0.00016 Score=52.29 Aligned_cols=68 Identities=26% Similarity=0.246 Sum_probs=60.3
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhc-CCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFG-PFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 94 (117)
+..-++.+|||||+||.-.+.++|-.+|. -||.|..+.+-.|++-+.++|-|-|.|.+..+--+|+..
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33457889999999999999999999999 599999998888877788999999999999998888874
No 106
>KOG2314|consensus
Probab=97.73 E-value=0.00034 Score=51.37 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=61.8
Q ss_pred CCCcEEEEeCCCCCCCH------HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-Ce
Q psy13319 31 GSGWCIFVYNLAPETEE------SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NR 103 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~------~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~ 103 (117)
.-+..|.|.|+|---.. ..|.++|+++|++....++.+.. |..+||.|++|.+...|+.|++.|||..++ ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 34567889999876433 35678899999999888887765 448999999999999999999999998887 55
Q ss_pred EEEEE
Q psy13319 104 ILQVS 108 (117)
Q Consensus 104 ~l~v~ 108 (117)
...|.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 55553
No 107
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.73 E-value=0.00039 Score=42.81 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=51.8
Q ss_pred CCCCcEEEEeCCCC------CCCH---HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 30 NGSGWCIFVYNLAP------ETEE---SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~------~~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
.+++.+|.|.=+.+ ...+ .++.+.|..||.+.-+++..+ .-+|.|.+-+.|-+|+. ++|..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34556666654441 2222 377788989999888887654 58999999999999999 799999
Q ss_pred CCeEEEEEEecCCC
Q psy13319 101 GNRILQVSFKTNKG 114 (117)
Q Consensus 101 ~g~~l~v~~a~~~~ 114 (117)
.|+.|+|....+.+
T Consensus 95 ~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 95 NGRTLKIRLKTPDW 108 (146)
T ss_dssp TTEEEEEEE-----
T ss_pred CCEEEEEEeCCccH
Confidence 99999998866554
No 108
>KOG1456|consensus
Probab=97.71 E-value=0.00065 Score=47.73 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEeCC--CCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe--
Q psy13319 28 TMNGSGWCIFVYNL--APETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR-- 103 (117)
Q Consensus 28 ~~~~~~~~l~v~~L--p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-- 103 (117)
+...+++.|.+.=| -+.++.+.|+.+-...|++..+.+... +|. -+.|+|.+.+.|++|...|||..|+..
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCC 189 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCC 189 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccce
Confidence 33445566655544 445788999999999999999977654 455 599999999999999999999988744
Q ss_pred EEEEEEecCCC
Q psy13319 104 ILQVSFKTNKG 114 (117)
Q Consensus 104 ~l~v~~a~~~~ 114 (117)
.|+|+||++.+
T Consensus 190 TLKIeyAkP~r 200 (494)
T KOG1456|consen 190 TLKIEYAKPTR 200 (494)
T ss_pred eEEEEecCcce
Confidence 68889998764
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=0.0003 Score=40.79 Aligned_cols=78 Identities=21% Similarity=0.255 Sum_probs=51.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe-
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVK-VIRDL------QTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR- 103 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~-~~~~~------~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~- 103 (117)
..+-|.|-+.|+. ....+.+.|+.||.|.+.. ...+. .......+..+.|.+..+|.+|+.. ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 3455888899998 5678999999999986653 00000 0012245899999999999999995 99999876
Q ss_pred EEEEEEec
Q psy13319 104 ILQVSFKT 111 (117)
Q Consensus 104 ~l~v~~a~ 111 (117)
.+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55566764
No 110
>KOG1365|consensus
Probab=97.66 E-value=0.00011 Score=51.64 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=62.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCC-eEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGA-VQS--VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~-i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
-.|.+++||+..+.++|..||..|.. |.. +.++.+ ..|++.|-+||+|.+.+.|.+|....+.....++.|.|--+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 35889999999999999999998864 322 555555 45889999999999999999999988877777888887543
No 111
>KOG0129|consensus
Probab=97.65 E-value=0.00068 Score=49.14 Aligned_cols=65 Identities=20% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecC--CCC-Ccce---EEEEEeCCHHHHHHHHHHh
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDL--QTN-KCKG---FGFVTMTNYDEAVVAIQSL 95 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~-~~~g---~~fv~f~~~~~a~~a~~~l 95 (117)
..-++.||||+||++++|+.|...|..||.+ .+.+.... ... -++| |+|+.|+++...+.-+..+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3456789999999999999999999999964 34454211 111 2356 9999999998888766654
No 112
>KOG2193|consensus
Probab=97.65 E-value=3.7e-05 Score=54.51 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=59.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-cEeCCeEEEEEEecCC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG-YALGNRILQVSFKTNK 113 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~a~~~ 113 (117)
.+|++||.+..+..++..+|....-...-.++.. .||+||.+.+..++.++++.++| ..+.|.++.+...-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 5899999999999999999986421111122222 56999999999999999999998 5688999999887665
Q ss_pred CCC
Q psy13319 114 GKT 116 (117)
Q Consensus 114 ~~~ 116 (117)
+++
T Consensus 77 kqr 79 (584)
T KOG2193|consen 77 KQR 79 (584)
T ss_pred HHH
Confidence 544
No 113
>KOG1548|consensus
Probab=97.62 E-value=0.00052 Score=47.58 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=60.9
Q ss_pred CCCCCcEEEEeCCCC----CCC-------HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 29 MNGSGWCIFVYNLAP----ETE-------ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~----~~~-------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
.....++|.+.|+-. ..+ .++|.+--.+||.+..+.+... .+.|.+-|.|.+.++|..|++.|+|
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 345677888888732 122 2455666778999999866432 3478999999999999999999999
Q ss_pred cEeCCeEEEEEEec
Q psy13319 98 YALGNRILQVSFKT 111 (117)
Q Consensus 98 ~~~~g~~l~v~~a~ 111 (117)
.+++|+.|..+...
T Consensus 337 R~fdgRql~A~i~D 350 (382)
T KOG1548|consen 337 RWFDGRQLTASIWD 350 (382)
T ss_pred eeecceEEEEEEeC
Confidence 99999999887644
No 114
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.59 E-value=0.0003 Score=36.01 Aligned_cols=52 Identities=17% Similarity=0.314 Sum_probs=40.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAI 92 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 92 (117)
+.|-|.|.+.+.. +.+.+.|..+|.|....+.. .....|+.|.++.+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 3567888887754 55677899999999987752 2448999999999999884
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.57 E-value=0.0011 Score=36.93 Aligned_cols=57 Identities=32% Similarity=0.513 Sum_probs=42.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN 96 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 96 (117)
..++..||. +|..+...||.++|++||.| .+.++.+. -|||....++.+..++..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 345566676 99999999999999999976 46676652 59999999999999988775
No 116
>KOG1365|consensus
Probab=97.53 E-value=0.00017 Score=50.64 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=55.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcC----CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGP----FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~----~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
..-.|..++||.++++.++.+||.. -|....+.++..+ .|+..|-+||.|..++.|+.|+.+ |...++.+.|
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 3446788899999999999999973 2345666666654 488899999999999999999986 5555554433
No 117
>KOG0120|consensus
Probab=97.52 E-value=0.00064 Score=49.62 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=51.8
Q ss_pred HHHHhhcCCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 49 VLWQLFGPFGAVQSVKVIRDLQT---NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 49 ~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
+++.-+.+||.|..|.+.++... .-+.|-.||+|.+.+++++|+..|+|..+.++.+..+|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 45555778999999888766211 23467899999999999999999999999999999888653
No 118
>KOG0112|consensus
Probab=97.46 E-value=0.0002 Score=54.90 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG--NRILQVS 108 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~ 108 (117)
.....+++++|+.++....+...|..||.|..+.+-. ...|+|+.|++...+++|+..+.|.-++ .++++|.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvd 526 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVD 526 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccccc
Confidence 4567899999999999999999999999998876632 2459999999999999999999999888 4578888
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
|+...
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 87754
No 119
>KOG2202|consensus
Probab=97.30 E-value=9.1e-05 Score=49.23 Aligned_cols=63 Identities=14% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHHhhc-CCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 48 SVLWQLFG-PFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 48 ~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+++...+. +||.|..+.+-.+ ..-.-.|-+||.|...++|++|+..||+.++.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34445555 8999988755433 223347899999999999999999999999999999988753
No 120
>KOG2416|consensus
Probab=97.30 E-value=0.00029 Score=51.96 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=62.8
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHhhcC-CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC---
Q psy13319 26 ANTMNGSGWCIFVYNLAPETEESVLWQLFGP-FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG--- 101 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--- 101 (117)
++.....+..|||.||-.-++..+|+.+++. .|.|... |+. +.+..|||.|.+.++|-+....|||+.|-
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 3345667889999999999999999999995 5555544 432 23668999999999999999999998764
Q ss_pred CeEEEEEEec
Q psy13319 102 NRILQVSFKT 111 (117)
Q Consensus 102 g~~l~v~~a~ 111 (117)
.+.|-+.|..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 5567777754
No 121
>KOG1855|consensus
Probab=97.16 E-value=0.00064 Score=48.36 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEec---CCCCC----------cceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRD---LQTNK----------CKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~----------~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
-++++|.+.|||.+-.-+-|.++|..+|.|..|++... +.+.. .+-+++|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 37899999999999888999999999999999988765 22211 255799999999999999998754
No 122
>KOG4307|consensus
Probab=97.15 E-value=0.00058 Score=51.36 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=66.4
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC
Q psy13319 24 LPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS-VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN 102 (117)
Q Consensus 24 ~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 102 (117)
.+.....+.+..|||.+||..+.+.++.++|.+.-.|+. +.+-.. -+++.++.+||.|...+++..|...-+...++.
T Consensus 425 q~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~ 503 (944)
T KOG4307|consen 425 QNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH 503 (944)
T ss_pred CCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCc
Confidence 344455677889999999999999999999998766655 555444 457778999999999888777766556667778
Q ss_pred eEEEEEE
Q psy13319 103 RILQVSF 109 (117)
Q Consensus 103 ~~l~v~~ 109 (117)
+.|+|.-
T Consensus 504 r~irv~s 510 (944)
T KOG4307|consen 504 RIIRVDS 510 (944)
T ss_pred eEEEeec
Confidence 8888864
No 123
>KOG1996|consensus
Probab=96.93 E-value=0.0055 Score=41.93 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=51.7
Q ss_pred HHHHHhhcCCCCeEEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 48 SVLWQLFGPFGAVQSVKVIRDLQTNKC-KGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+++++...+||.|..|.+...+..... .--.||+|...+.|.+|+..|||..++|+.+..+|-+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 467778889999998877665433222 3458999999999999999999999999999988754
No 124
>KOG4660|consensus
Probab=96.89 E-value=0.0019 Score=47.30 Aligned_cols=59 Identities=19% Similarity=0.358 Sum_probs=49.0
Q ss_pred CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC----CeEEEEEEecCCCC
Q psy13319 57 FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG----NRILQVSFKTNKGK 115 (117)
Q Consensus 57 ~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~a~~~~~ 115 (117)
.|....+.++.|-.+.+.-|||||+|-+.+++....+.++|..|. .+.+.+.||+-+++
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 677778888888888888999999999999999999999997554 45677888876654
No 125
>KOG4676|consensus
Probab=96.73 E-value=0.0037 Score=44.23 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=57.4
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQ---TNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.|.|.||.+.++.++++.+|...|.|.++.+..... .......|||.|.+...+..|.. |.+..+-+..|.|-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 799999999999999999999999999998765322 23346799999999999988866 55655555554443
No 126
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.70 E-value=0.016 Score=30.60 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=42.8
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCC---CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPF---GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 95 (117)
..|+|.|+.. .+.++|+.+|..| .....+.|..+. -|-|.|.+...|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4589999854 5678899999988 235678888774 3889999999999998753
No 127
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.58 E-value=0.012 Score=37.62 Aligned_cols=81 Identities=12% Similarity=0.194 Sum_probs=50.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcC-CCCe---EEEEEEecCC-CC-CcceEEEEEeCCHHHHHHHHHHhCCcEeC---
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGP-FGAV---QSVKVIRDLQ-TN-KCKGFGFVTMTNYDEAVVAIQSLNGYALG--- 101 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~-~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--- 101 (117)
.....|-|++||+..+++++.+.+.. ++.. ..+....... .. ....-||+.|.+.++.......++|..+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 6655 2332112211 12 23567999999999999999999997764
Q ss_pred C--eEEEEEEec
Q psy13319 102 N--RILQVSFKT 111 (117)
Q Consensus 102 g--~~l~v~~a~ 111 (117)
| ....|.+|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 2 244555543
No 128
>KOG0128|consensus
Probab=96.48 E-value=0.0014 Score=50.10 Aligned_cols=78 Identities=15% Similarity=0.082 Sum_probs=64.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
...++|.|.|+..+.+.++.++.+.|.+..++++..+ .|+++|.++|.|.+...+.++........+.-+.+.+..++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 4568999999999999999999999999888877664 59999999999999999998887776666665555555533
No 129
>KOG2068|consensus
Probab=96.36 E-value=0.0016 Score=45.01 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=58.4
Q ss_pred cEEEEeCCCCCCCHHHHH---HhhcCCCCeEEEEEEecCC--CC-CcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 34 WCIFVYNLAPETEESVLW---QLFGPFGAVQSVKVIRDLQ--TN-KCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~--~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
.-+||-+|+.....+.+. +.|..||.|..+..-.+.. .+ .+..-+||.|...++|..++...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888888876544433 5688899998887766541 11 12345999999999999999999999999888777
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
++...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66543
No 130
>KOG0128|consensus
Probab=96.33 E-value=0.00014 Score=55.40 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=57.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
.++||.||+..+.+.++...|..+|.+..+.+..+..+++.+|+||+.|...+.+.+++....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 56899999999999999999999998877766656677889999999999999999998865554444
No 131
>KOG0115|consensus
Probab=96.07 E-value=0.01 Score=39.81 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=52.9
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
..|||.||+..++.+.+...|+.||.+..-.+..| .-++..+-++|.|.....+.+|+..+..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhcc
Confidence 66999999999999999999999999966544444 2377788899999999999999987743
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.74 E-value=0.05 Score=35.07 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=44.3
Q ss_pred CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEEEEEecC
Q psy13319 46 EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN--GYALGNRILQVSFKTN 112 (117)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~ 112 (117)
....|+++|..++.+..+..+.. -+-..|.|.+.+.|.++...|+ +..+.|..+++.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999998877766544 2358899999999999999999 8999999999998753
No 133
>KOG0112|consensus
Probab=95.66 E-value=0.0018 Score=49.97 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=64.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...+||++||+..+++.+|...|..+|.+..|.+...+. +...-|+|+.|.+...+..++..+.+..|....+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 567899999999999999999999999999998866532 344569999999999999999888888777555555443
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.62 E-value=0.11 Score=32.13 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=53.4
Q ss_pred CCCCcEEEEeCCCCCCC----HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 30 NGSGWCIFVYNLAPETE----ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~----~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.++=.+|-|+=|.++.. -..+...++.||.|..+.+. | +--+.|.|.+..+|=.|+..++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34556777876666643 24566677889999887653 3 33699999999999999998866 5667788
Q ss_pred EEEEe
Q psy13319 106 QVSFK 110 (117)
Q Consensus 106 ~v~~a 110 (117)
+++|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 88773
No 135
>KOG2591|consensus
Probab=95.60 E-value=0.039 Score=40.97 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcC--CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEeCCeEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGP--FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG--YALGNRIL 105 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l 105 (117)
.-|.+.++-||..+-.++++.+|.. +-.+..|.+-.+. -.||.|++..+|+.|.+.|.. ..|.|+.|
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 4467889999999999999999996 6677888775442 489999999999999998865 34666654
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.49 E-value=0.25 Score=29.14 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=48.6
Q ss_pred CCcEEEEeCCCCCCCH-HHHHHhhcCC-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 32 SGWCIFVYNLAPETEE-SVLWQLFGPF-GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~-~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
.+..+.+-..|+.... +++..+...+ ..|.++++.++. ..++-.+.+.|.+.+.|......+||..+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3445555555666554 5555555554 457888888873 235778999999999999999999998765
No 137
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.39 E-value=0.18 Score=26.92 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=41.7
Q ss_pred CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 45 TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 45 ~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
++-.+++..+..|+ ...+ ..+ +..-||.|.+..+|+++....+|..+.+..+.+
T Consensus 12 ~~v~d~K~~Lr~y~-~~~I--~~d------~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYR-WDRI--RDD------RTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCC-cceE--Eec------CCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 56789999999987 3333 333 225789999999999999999998887777654
No 138
>KOG2253|consensus
Probab=95.10 E-value=0.026 Score=42.47 Aligned_cols=80 Identities=20% Similarity=0.168 Sum_probs=63.9
Q ss_pred cccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 20 ASSILPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 20 ~~~~~~~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
..+..+.....++..++||+|+...+..+-+..++..+|-|..+.. . -|||..|.......+++..+....
T Consensus 27 ~~p~qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~-------~fgf~~f~~~~~~~ra~r~~t~~~ 97 (668)
T KOG2253|consen 27 VVPIQPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D-------KFGFCEFLKHIGDLRASRLLTELN 97 (668)
T ss_pred ccCCcccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h-------hhcccchhhHHHHHHHHHHhcccC
Confidence 3444556666778889999999999999999999999998755422 1 289999999999999999888888
Q ss_pred eCCeEEEEE
Q psy13319 100 LGNRILQVS 108 (117)
Q Consensus 100 ~~g~~l~v~ 108 (117)
++|..+.+.
T Consensus 98 ~~~~kl~~~ 106 (668)
T KOG2253|consen 98 IDDQKLIEN 106 (668)
T ss_pred CCcchhhcc
Confidence 887766543
No 139
>KOG2135|consensus
Probab=94.95 E-value=0.019 Score=41.61 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=58.3
Q ss_pred CCcEEEEeCCCCCCC-HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETE-ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~-~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+.+.+-+...|...+ -++|...|..||.|..|.+-.. .-.|.|+|.+..+|-+|.. .++..|.++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 455666666777654 5789999999999988866333 3479999999999866755 5899999999999997
Q ss_pred cC
Q psy13319 111 TN 112 (117)
Q Consensus 111 ~~ 112 (117)
++
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 140
>KOG4285|consensus
Probab=94.47 E-value=0.21 Score=34.50 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=51.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe-EEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR-ILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~a~ 111 (117)
+.=|-|-++|+.. ...+...|..||.|.+.... .+ -.+-+|.|.++.+|++|+.+ +|..|+|. .|-|.-+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~---~n---gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP---SN---GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC---CC---CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 3446677888774 35688899999998654222 22 34899999999999999995 89888865 35554433
No 141
>KOG4410|consensus
Probab=93.78 E-value=0.26 Score=33.94 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=38.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCe-EEEEEEecCCCCCcceEEEEEeCCHH
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAV-QSVKVIRDLQTNKCKGFGFVTMTNYD 86 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~ 86 (117)
+....+|++||+.++...||+..+.+.+.+ ..+.|.- +.|-||..|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCcc
Confidence 344569999999999999999999988754 4454532 3667999997653
No 142
>KOG0804|consensus
Probab=92.65 E-value=0.95 Score=33.09 Aligned_cols=67 Identities=12% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCC-CCeEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPF-GAVQSVKVIRDLQTNK-CKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
++..|+|-.+|...+.-|+..|...+ ..|..++++++ |. ++-...+.|.+..+|....+.+||..+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999999875 45789999986 33 3557889999999999999999997765
No 143
>KOG4210|consensus
Probab=91.86 E-value=0.17 Score=34.88 Aligned_cols=76 Identities=18% Similarity=0.065 Sum_probs=57.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
....+.|++++...+.+.+...++..+|............+...++++++.|...+.+..++.........+..+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGE 161 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccccc
Confidence 3567899999999999888888888888765555544445577799999999999999999985433344444433
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.86 E-value=1.2 Score=24.12 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=33.5
Q ss_pred CCCHHHHHHhhcCCCC-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 44 ETEESVLWQLFGPFGA-----VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 44 ~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.++..+|..++..-+. |-.+.+... |+||+-... .+..++..|++..+.|+.++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577788888876543 455656433 899888764 678888999999999999998864
No 145
>KOG4483|consensus
Probab=89.40 E-value=2 Score=31.13 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGA-VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 94 (117)
.+-.+.|-|.++|.....+||...|..|+. -..|.|+.+. +++..|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345678899999999999999999999864 4677888763 799999999999999885
No 146
>KOG4574|consensus
Probab=86.53 E-value=0.66 Score=36.46 Aligned_cols=72 Identities=25% Similarity=0.331 Sum_probs=56.8
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe--CCeEEEEEEecC
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL--GNRILQVSFKTN 112 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~a~~ 112 (117)
+.++.|.+-..+-..|..++..||.+.....+++ --.+.|.|...+.|-.|...++|..+ .|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445555556666788899999999988766665 23799999999999999999999764 477889998875
No 147
>KOG2318|consensus
Probab=81.33 E-value=19 Score=27.56 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHhhcCC----CCeEEEEEEecC----------CC-----------------------
Q psy13319 30 NGSGWCIFVYNLAPE-TEESVLWQLFGPF----GAVQSVKVIRDL----------QT----------------------- 71 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~----g~i~~~~~~~~~----------~~----------------------- 71 (117)
....++|-|-|+.|+ +...+|..+|..| |.|..|.+.... -+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456778999999998 6778999888764 467777653221 00
Q ss_pred --------------CCcceEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEEEEE
Q psy13319 72 --------------NKCKGFGFVTMTNYDEAVVAIQSLNGYALG--NRILQVSF 109 (117)
Q Consensus 72 --------------~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~ 109 (117)
....=||.|+|.+...|......++|+.+. +..+-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 112347789999999999999999999887 45555555
No 148
>KOG4676|consensus
Probab=80.90 E-value=0.14 Score=36.61 Aligned_cols=65 Identities=11% Similarity=-0.047 Sum_probs=48.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
-.++++|++|+..+...++.+.|..+|.+....+- .+....+|-+.|........++. .+|..+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 34789999999999999999999999987655442 23334567789988777777777 4666554
No 149
>PRK11901 hypothetical protein; Reviewed
Probab=71.02 E-value=23 Score=25.14 Aligned_cols=64 Identities=14% Similarity=0.029 Sum_probs=40.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKC-KGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
....++|.+..+ ..++.|..|....+ +..+.+.....+|+. .-..|-.|.+.++|+.|+..|..
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345667777665 44677777777654 333444333334543 33455678899999999998865
No 150
>KOG2295|consensus
Probab=70.74 E-value=0.52 Score=35.25 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=53.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR 103 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 103 (117)
.+.+++.|+++.++..+|......+..+.++.+............++|.|.-......|+..||++.+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 45789999999999999999999877666655543333334466889999877777778888888766543
No 151
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=65.46 E-value=16 Score=19.48 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=40.5
Q ss_pred HHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCC
Q psy13319 48 SVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNK 113 (117)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 113 (117)
++|.+.|...| .+..+.-+..+.++.+-..-||+.....+...+ ++=..+.+..++|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 45677777766 467777777766677777888888765442222 3334566778888765543
No 152
>KOG2193|consensus
Probab=63.66 E-value=0.14 Score=36.99 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=58.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEe-cCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIR-DLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.+.+.|+|+...++.+..++..||.+..|..+. ++. .-..-|.|...+.++.++..++|..+....+++.|
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 456689999999999999999999999998875432 222 12344678889999999999999888888788776
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.21 E-value=20 Score=18.91 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=15.4
Q ss_pred HHHHHhhcCCCCeEEEEEE
Q psy13319 48 SVLWQLFGPFGAVQSVKVI 66 (117)
Q Consensus 48 ~~l~~~f~~~g~i~~~~~~ 66 (117)
.+|+++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999998766553
No 154
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=62.54 E-value=15 Score=19.77 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 48 SVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 48 ~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.+|++.|...| ++..+.-+..+.++.+...-+|+.....+... .|+=..++++++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 45777788776 46777777777767667788888875433222 234445678887777543
No 155
>KOG4019|consensus
Probab=60.48 E-value=8.5 Score=24.91 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=48.4
Q ss_pred cEEEEeCCCCCCCH-----HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe-EEEE
Q psy13319 34 WCIFVYNLAPETEE-----SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR-ILQV 107 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l~v 107 (117)
..+.+.+++..+.. ...+.+|..+.+.....+.+. .+...|.|.+...|..+...+++..+.|. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34556666665432 234455665555444444332 34677899999999999999999999877 7777
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
-++.+
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 77654
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.54 E-value=28 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.221 Sum_probs=33.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEec
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRD 68 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~ 68 (117)
.......+++.+++.......+...|..+|.+....+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 3456778999999999999999999999999866655444
No 157
>KOG4454|consensus
Probab=53.61 E-value=2.7 Score=28.10 Aligned_cols=67 Identities=22% Similarity=0.409 Sum_probs=51.9
Q ss_pred CCcEEEEeC----CCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 32 SGWCIFVYN----LAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 32 ~~~~l~v~~----Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
...+++-|+ |....+++.+++.|...|.+..++...+.. +.++.++++.+........++....+..
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccC
Confidence 344555666 666778888888899989888888877765 7788899999998888888887776653
No 158
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=52.56 E-value=13 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=20.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhc
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFG 55 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~ 55 (117)
...++|.|.|||....++++++.+.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3567899999999999998885543
No 159
>PF15063 TC1: Thyroid cancer protein 1
Probab=51.09 E-value=10 Score=20.87 Aligned_cols=31 Identities=16% Similarity=0.071 Sum_probs=25.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCe
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAV 60 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i 60 (117)
....++--+.|+-.+++...|..+|+.-|+.
T Consensus 22 dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 22 DTASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred chHHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3445566678888999999999999998864
No 160
>KOG1295|consensus
Probab=47.31 E-value=45 Score=24.16 Aligned_cols=70 Identities=17% Similarity=0.240 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGA-VQSVKVIRDLQT--NKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
....+-|..||+..++.++.+.+..+-. +....+...... ..-.+.+||.|...++...-...++|+.+-
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3456888999999999988888877543 111122211111 112678999999999988888888887643
No 161
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.91 E-value=41 Score=18.58 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=21.8
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 74 CKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 74 ~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
.+||-||+=.+..+...|+..+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 48999999999999999988776654
No 162
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=43.52 E-value=70 Score=19.00 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=24.2
Q ss_pred CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHH
Q psy13319 46 EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN-YDEAVVAIQ 93 (117)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~ 93 (117)
+.+.|.+.|+.|..+. ++.+..+ .-+.|++.|.|.. -.-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4468888888887653 4444443 3458899999974 333344433
No 163
>KOG0156|consensus
Probab=43.03 E-value=61 Score=24.35 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=42.7
Q ss_pred EEeCCCCCCC---HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 37 FVYNLAPETE---ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 37 ~v~~Lp~~~~---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.||||+.-.. ...+.++-.+||.+-.+++-. .-.|...+.+.|++++.. ++..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3677765533 356666667899998776621 367888999999999996 7888887764
No 164
>PF14893 PNMA: PNMA
Probab=41.15 E-value=19 Score=25.65 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcC
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGP 56 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~ 56 (117)
+..+.+.|.++|.++.+.+|++.++.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45667999999999999999888764
No 165
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.19 E-value=73 Score=17.95 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=30.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMT 83 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~ 83 (117)
..-+||++++..+.+.--..+....+.-.-+-+..+. . ..||.|-...
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEeC
Confidence 3449999999998877666666655444333333331 2 4678887773
No 166
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=38.58 E-value=1e+02 Score=21.70 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=53.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecC-------CCCCcceEEEEEeCCHHHHHHH----HHHhCC--cE
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDL-------QTNKCKGFGFVTMTNYDEAVVA----IQSLNG--YA 99 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a----~~~l~~--~~ 99 (117)
.+.|.+.|+..+++--.+...|-+||.|+.+.+..+. .......-..+-|-+++.|... ++.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4557788898888777788888999999999988764 1122334677788888776543 222222 24
Q ss_pred eCCeEEEEEEec
Q psy13319 100 LGNRILQVSFKT 111 (117)
Q Consensus 100 ~~g~~l~v~~a~ 111 (117)
+....|.++|..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 556777777654
No 167
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.13 E-value=18 Score=26.37 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCCCH--------HHHHHhhcC--CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q psy13319 34 WCIFVYNLAPETEE--------SVLWQLFGP--FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 93 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~--------~~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 93 (117)
+.+|+.+.+..... +++...|.. .+.+..+..-++..+..++|..|++|...+.+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666665443 378888887 5667777777766566778899999999999999863
No 168
>KOG4008|consensus
Probab=36.02 E-value=29 Score=23.55 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQ 61 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~ 61 (117)
+.-.....+|+-|+|..++++.+.++....|-+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 3445666799999999999999999988877443
No 169
>PRK10905 cell division protein DamX; Validated
Probab=35.14 E-value=1.1e+02 Score=21.90 Aligned_cols=62 Identities=11% Similarity=-0.032 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKC-KGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
..++|.|..+.. ++.+.++..+.|. ....+.....+|+. .-..+-.|.+.++|++|+..|..
T Consensus 246 ~~YTLQL~A~Ss---~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSSN---YDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecCC---HHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 556777766654 4566666666543 22222233334542 34556678999999999998854
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=32.98 E-value=88 Score=18.10 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN 84 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~ 84 (117)
..-+||++++..+.+.--..+-+.++.-.-+-+..+ +.. .||.|-.+..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCC-CCcEEEecCC
Confidence 344999999888876544444444443333322232 222 4888887764
No 171
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=32.61 E-value=17 Score=19.46 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=14.5
Q ss_pred CCCcEEEEeCCCCCCCHH
Q psy13319 31 GSGWCIFVYNLAPETEES 48 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~ 48 (117)
..++.+|||++|..+-.+
T Consensus 25 ~tSr~vflG~IP~~W~~~ 42 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQD 42 (67)
T ss_pred HcCceEEECCCChHHHHc
Confidence 467789999999987654
No 172
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.31 E-value=72 Score=15.57 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCe
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAV 60 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i 60 (117)
..+++.+........++.+++...|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 457777776677888999999998863
No 173
>KOG4213|consensus
Probab=29.77 E-value=88 Score=20.45 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=34.2
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCC-CCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHH
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPF-GAVQSVKVIRDLQTN--KCKGFGFVTMTNYDEAVVAIQS 94 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~ 94 (117)
+++|.. .+++.+..+.+.- |.+..+..-.. ..+ ..+|-.||+|.+.+.+.+.+..
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhcccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455544 4444444443322 57777655433 223 4578999999999999987664
No 174
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.97 E-value=93 Score=21.40 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=21.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCe
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAV 60 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i 60 (117)
.....|+|||+.++..-+.+++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 3457799999999999888888865443
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.86 E-value=1e+02 Score=16.28 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 77 FGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 77 ~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
+.++.|.+...|.++-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 688999999999888877755433
No 176
>KOG4365|consensus
Probab=25.84 E-value=11 Score=27.82 Aligned_cols=75 Identities=4% Similarity=-0.188 Sum_probs=44.9
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..++..+|...++.++.-.|+.||-|..+.+.+.-.-+...-.+|+.-.. ..++.++.-+--..+.+..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 35667888888999999999999988877654433334445566766553 2333333332223334445555443
No 177
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.45 E-value=1.2e+02 Score=16.13 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=21.5
Q ss_pred HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEE
Q psy13319 47 ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFV 80 (117)
Q Consensus 47 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv 80 (117)
+..+.+.|-+...+..+.+.-.+.-+ +|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 45777888888888888776654333 455554
No 178
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.31 E-value=1e+02 Score=21.40 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=17.2
Q ss_pred EEEEeCCHHHHHHHHHHhCC
Q psy13319 78 GFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 78 ~fv~f~~~~~a~~a~~~l~~ 97 (117)
|||.|.+..+|+.+.+.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 69999999999999986544
No 179
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=25.06 E-value=1.2e+02 Score=16.67 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=15.5
Q ss_pred EEEEeCCCCCCC--------HHHHHHhhcCCCCeEE
Q psy13319 35 CIFVYNLAPETE--------ESVLWQLFGPFGAVQS 62 (117)
Q Consensus 35 ~l~v~~Lp~~~~--------~~~l~~~f~~~g~i~~ 62 (117)
.++|.|||..+. -..|++++..-..|..
T Consensus 36 ~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~F 71 (76)
T PF02946_consen 36 AVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRF 71 (76)
T ss_dssp TEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EE
T ss_pred cEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEE
Confidence 489999988764 2466677776655544
No 180
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=23.56 E-value=34 Score=20.36 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=9.2
Q ss_pred CCCcEEEEeCCC
Q psy13319 31 GSGWCIFVYNLA 42 (117)
Q Consensus 31 ~~~~~l~v~~Lp 42 (117)
+....+|||++|
T Consensus 90 ~~~~~lyvGG~p 101 (131)
T PF00054_consen 90 DVDGPLYVGGLP 101 (131)
T ss_dssp EECSEEEESSSS
T ss_pred ccccCEEEccCC
Confidence 344459999999
No 181
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=22.46 E-value=49 Score=20.00 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=24.7
Q ss_pred EEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEE
Q psy13319 36 IFVYNLAPE-TEESVLWQLFGPFGAVQSVKVI 66 (117)
Q Consensus 36 l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~ 66 (117)
|.|.|||.. .+++.+.++.+.+|.+..+...
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 556799998 5778888888899998877553
No 182
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.68 E-value=3.6e+02 Score=20.39 Aligned_cols=64 Identities=17% Similarity=0.132 Sum_probs=39.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhc----CCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFG----PFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN 96 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 96 (117)
++..+.++.-.......++..+|. .+|-|.++.+...+... .....++.|.+.+++..++..+.
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPP-VARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCc-ceEEEEEECCCHHHHHHHHHHHH
Confidence 444455543322233346666655 46778888776665432 34567888999999988887753
No 183
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.35 E-value=66 Score=14.98 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=9.5
Q ss_pred CCCCHHHHHHhhcCCC
Q psy13319 43 PETEESVLWQLFGPFG 58 (117)
Q Consensus 43 ~~~~~~~l~~~f~~~g 58 (117)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3568889999987654
No 184
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=21.05 E-value=1.3e+02 Score=18.26 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=20.4
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 73 KCKGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 73 ~~~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
...||-||+.........++..+.|.
T Consensus 36 ~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 36 SLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred CCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 36899999999777777777777664
No 185
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.16 E-value=1.2e+02 Score=20.58 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhc
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFG 55 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~ 55 (117)
....+.|+|||...+..-+.+++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHH
T ss_pred CCceEEEEEecccchHHHHHHHhh
Confidence 456789999999999888888876
Done!