Query psy13319
Match_columns 117
No_of_seqs 106 out of 1507
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 16:27:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9E-25 3.1E-29 126.3 12.0 82 31-112 17-98 (99)
2 3s8s_A Histone-lysine N-methyl 99.9 7.3E-23 2.5E-27 120.3 12.7 83 31-113 4-86 (110)
3 2cq0_A Eukaryotic translation 99.9 2.3E-22 7.7E-27 116.7 13.9 87 29-115 11-97 (103)
4 3md1_A Nuclear and cytoplasmic 99.9 1.4E-22 4.8E-27 113.1 12.5 82 33-114 1-82 (83)
5 3bs9_A Nucleolysin TIA-1 isofo 99.9 9.4E-23 3.2E-27 114.8 11.8 85 30-114 3-87 (87)
6 2do4_A Squamous cell carcinoma 99.9 3.7E-22 1.3E-26 115.2 13.5 87 29-116 13-99 (100)
7 2dgo_A Cytotoxic granule-assoc 99.9 3.8E-22 1.3E-26 117.8 13.7 87 29-115 11-97 (115)
8 2cqc_A Arginine/serine-rich sp 99.9 2.5E-22 8.7E-27 114.7 12.4 86 27-112 9-94 (95)
9 2dgs_A DAZ-associated protein 99.9 2.1E-22 7.1E-27 116.0 12.1 87 29-116 6-92 (99)
10 2lxi_A RNA-binding protein 10; 99.9 8E-24 2.7E-28 120.5 6.0 84 33-116 1-86 (91)
11 1x5u_A Splicing factor 3B subu 99.9 1.2E-22 4E-27 118.2 10.9 89 28-116 10-98 (105)
12 2cpz_A CUG triplet repeat RNA- 99.9 2.2E-22 7.5E-27 118.9 12.2 88 28-115 20-107 (115)
13 1whw_A Hypothetical protein ri 99.9 2.4E-22 8.1E-27 115.8 11.8 86 30-115 5-90 (99)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.9 1.7E-22 5.7E-27 113.3 10.7 82 30-111 4-85 (85)
15 2cqb_A Peptidyl-prolyl CIS-tra 99.9 1.4E-22 4.9E-27 117.3 10.6 88 29-116 8-95 (102)
16 2dnh_A Bruno-like 5, RNA bindi 99.9 5.4E-22 1.8E-26 115.4 13.0 87 29-116 11-100 (105)
17 2div_A TRNA selenocysteine ass 99.9 1.3E-22 4.5E-27 116.8 10.0 88 29-116 5-97 (99)
18 2e5h_A Zinc finger CCHC-type a 99.9 4.4E-22 1.5E-26 113.6 12.0 83 29-111 12-94 (94)
19 1x4h_A RNA-binding protein 28; 99.9 3.8E-22 1.3E-26 117.1 12.0 88 28-115 10-103 (111)
20 2jrs_A RNA-binding protein 39; 99.9 3.6E-22 1.2E-26 116.9 11.8 87 28-114 21-107 (108)
21 2dnz_A Probable RNA-binding pr 99.9 3.7E-22 1.3E-26 114.1 11.4 85 31-115 3-87 (95)
22 1p27_B RNA-binding protein 8A; 99.9 3E-22 1E-26 116.7 11.1 87 29-115 19-105 (106)
23 2la6_A RNA-binding protein FUS 99.9 4.6E-22 1.6E-26 114.6 11.6 84 28-111 8-99 (99)
24 2x1f_A MRNA 3'-END-processing 99.9 3.7E-22 1.3E-26 114.4 11.1 83 32-114 1-83 (96)
25 2khc_A Testis-specific RNP-typ 99.9 6.5E-22 2.2E-26 117.3 12.1 83 29-111 36-118 (118)
26 2dng_A Eukaryotic translation 99.9 1.7E-21 6E-26 112.9 13.6 85 29-115 11-95 (103)
27 1oo0_B CG8781-PA, drosophila Y 99.9 4.4E-22 1.5E-26 116.7 11.1 87 29-115 22-108 (110)
28 2dnm_A SRP46 splicing factor; 99.9 2.1E-22 7.3E-27 116.8 9.7 86 30-115 10-95 (103)
29 2lkz_A RNA-binding protein 5; 99.9 1.4E-22 4.9E-27 116.1 8.5 82 31-112 7-94 (95)
30 1x5s_A Cold-inducible RNA-bind 99.9 2E-22 6.9E-27 116.6 9.3 88 28-115 7-94 (102)
31 2d9p_A Polyadenylate-binding p 99.9 1.2E-21 4.1E-26 113.6 12.6 86 28-115 10-95 (103)
32 2cph_A RNA binding motif prote 99.9 7.1E-22 2.4E-26 115.2 11.2 87 29-115 11-99 (107)
33 1u6f_A Tcubp1, RNA-binding pro 99.9 9.8E-22 3.3E-26 119.5 12.2 88 29-116 38-125 (139)
34 1x5t_A Splicing factor 3B subu 99.9 3.3E-22 1.1E-26 114.5 9.5 85 31-115 3-88 (96)
35 1wi8_A EIF-4B, eukaryotic tran 99.9 1.5E-21 5.2E-26 113.4 11.8 84 30-115 12-96 (104)
36 2kxn_B Transformer-2 protein h 99.9 4.3E-22 1.5E-26 120.0 9.7 88 27-114 40-127 (129)
37 2dgp_A Bruno-like 4, RNA bindi 99.9 4.5E-22 1.6E-26 115.9 9.5 87 29-115 9-98 (106)
38 2cpf_A RNA binding motif prote 99.9 7.9E-22 2.7E-26 113.4 10.2 85 31-115 3-90 (98)
39 2cpe_A RNA-binding protein EWS 99.9 1.3E-21 4.5E-26 115.2 11.4 87 29-115 11-105 (113)
40 3ulh_A THO complex subunit 4; 99.9 2.8E-21 9.5E-26 112.7 12.5 82 29-111 25-106 (107)
41 2dgx_A KIAA0430 protein; RRM d 99.9 1.3E-21 4.6E-26 112.2 10.9 85 29-116 5-93 (96)
42 4f25_A Polyadenylate-binding p 99.9 1.5E-21 5.1E-26 115.4 11.4 80 33-114 5-84 (115)
43 2cqp_A RNA-binding protein 12; 99.9 1.1E-21 3.7E-26 112.8 10.4 86 29-114 11-96 (98)
44 2cq3_A RNA-binding protein 9; 99.9 7.1E-21 2.4E-25 110.3 13.8 87 27-115 9-95 (103)
45 2dgw_A Probable RNA-binding pr 99.9 5.4E-21 1.8E-25 108.5 12.8 84 30-116 7-90 (91)
46 3p5t_L Cleavage and polyadenyl 99.9 1.1E-22 3.7E-27 115.5 5.7 82 34-115 2-85 (90)
47 2cqi_A Nucleolysin TIAR; RNA r 99.9 5E-21 1.7E-25 111.0 12.8 86 28-115 10-95 (103)
48 2rs2_A Musashi-1, RNA-binding 99.9 1.6E-21 5.5E-26 114.3 10.7 89 26-115 18-106 (109)
49 4a8x_A RNA-binding protein wit 99.9 1.7E-21 5.7E-26 109.8 10.3 84 32-115 3-87 (88)
50 2ywk_A Putative RNA-binding pr 99.9 2.1E-21 7.2E-26 110.9 10.7 83 29-112 12-94 (95)
51 1h2v_Z 20 kDa nuclear CAP bind 99.9 5.3E-21 1.8E-25 118.4 13.4 86 30-115 36-121 (156)
52 3s7r_A Heterogeneous nuclear r 99.9 4.6E-21 1.6E-25 107.9 11.9 81 29-110 7-87 (87)
53 3n9u_C Cleavage and polyadenyl 99.9 1.1E-21 3.7E-26 121.7 10.1 81 32-112 54-136 (156)
54 2fy1_A RNA-binding motif prote 99.9 1.3E-21 4.6E-26 115.8 10.1 85 30-115 4-88 (116)
55 2cqd_A RNA-binding region cont 99.9 3.9E-21 1.3E-25 113.6 11.9 86 27-113 11-96 (116)
56 3ex7_B RNA-binding protein 8A; 99.9 1.1E-21 3.9E-26 117.4 9.7 87 28-114 17-103 (126)
57 2do0_A HnRNP M, heterogeneous 99.9 1.2E-20 4.1E-25 111.1 13.9 84 29-113 11-94 (114)
58 3ns6_A Eukaryotic translation 99.9 2.7E-22 9.3E-27 115.9 6.6 83 31-113 4-93 (100)
59 3ucg_A Polyadenylate-binding p 99.9 2.7E-21 9.3E-26 109.2 10.5 82 32-114 5-86 (89)
60 2dgv_A HnRNP M, heterogeneous 99.9 2.9E-21 1E-25 109.7 10.7 84 30-115 5-88 (92)
61 2dh8_A DAZ-associated protein 99.9 2E-21 6.9E-26 113.0 10.2 86 29-115 12-97 (105)
62 2kt5_A RNA and export factor-b 99.9 1.6E-20 5.4E-25 112.2 13.7 85 29-114 31-115 (124)
63 1x4a_A Splicing factor, argini 99.9 8.8E-21 3E-25 111.0 12.3 85 28-115 17-101 (109)
64 2dhg_A TRNA selenocysteine ass 99.9 1.5E-21 5.1E-26 113.3 8.9 85 30-115 6-92 (104)
65 2cqg_A TDP-43, TAR DNA-binding 99.9 1.9E-20 6.6E-25 108.4 13.3 84 30-115 12-95 (103)
66 2ek1_A RNA-binding protein 12; 99.9 1.6E-21 5.3E-26 111.5 8.3 83 30-112 12-94 (95)
67 2j76_E EIF-4B, EIF4B, eukaryot 99.9 6.8E-22 2.3E-26 114.2 6.8 85 28-114 14-99 (100)
68 1p1t_A Cleavage stimulation fa 99.9 7.2E-22 2.5E-26 114.6 6.8 84 31-114 6-89 (104)
69 2cpi_A CCR4-NOT transcription 99.9 1.2E-20 4.1E-25 110.9 12.0 85 31-115 13-103 (111)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.9 9.1E-21 3.1E-25 118.4 12.2 86 29-114 68-153 (165)
71 1x4b_A Heterogeneous nuclear r 99.9 2.9E-21 1E-25 114.2 9.4 84 31-115 25-108 (116)
72 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 1.1E-20 3.7E-25 114.8 11.8 84 27-110 57-140 (140)
73 2kn4_A Immunoglobulin G-bindin 99.9 6.8E-21 2.3E-25 118.0 10.9 86 30-115 67-152 (158)
74 2m2b_A RNA-binding protein 10; 99.9 5.7E-22 1.9E-26 119.7 5.8 85 30-115 20-110 (131)
75 2fc9_A NCL protein; structure 99.9 2.4E-20 8.1E-25 107.7 12.2 83 29-115 11-93 (101)
76 2cq4_A RNA binding motif prote 99.9 2.8E-21 9.4E-26 114.0 8.3 82 31-113 23-104 (114)
77 2cq1_A PTB-like protein L; RRM 99.9 4E-20 1.4E-24 107.0 13.0 81 29-115 11-93 (101)
78 1x4e_A RNA binding motif, sing 99.9 1E-21 3.5E-26 110.2 6.1 81 31-111 3-83 (85)
79 1sjq_A Polypyrimidine tract-bi 99.9 3.5E-21 1.2E-25 111.8 8.4 81 29-115 12-94 (105)
80 3r27_A HnRNP L, heterogeneous 99.8 1.3E-20 4.3E-25 108.6 10.1 83 26-114 14-98 (100)
81 1x5o_A RNA binding motif, sing 99.8 3.9E-20 1.3E-24 109.0 12.4 84 30-114 22-113 (114)
82 2jwn_A Embryonic polyadenylate 99.8 1.5E-20 5.2E-25 112.2 10.8 82 32-114 35-116 (124)
83 1x4d_A Matrin 3; structural ge 99.8 8.3E-21 2.8E-25 110.0 9.3 80 29-114 11-93 (102)
84 2fc8_A NCL protein; structure 99.8 4E-20 1.4E-24 106.9 12.1 84 29-115 11-94 (102)
85 2err_A Ataxin-2-binding protei 99.8 1.3E-20 4.5E-25 110.4 9.7 85 28-114 24-108 (109)
86 1s79_A Lupus LA protein; RRM, 99.8 5.1E-21 1.7E-25 111.2 7.6 81 30-112 8-88 (103)
87 2dnq_A RNA-binding protein 4B; 99.8 3.3E-20 1.1E-24 105.1 10.7 80 29-116 4-83 (90)
88 2cpy_A RNA-binding protein 12; 99.8 1E-20 3.5E-25 111.6 8.7 82 29-112 11-93 (114)
89 2dis_A Unnamed protein product 99.8 1.2E-20 4E-25 110.4 8.8 85 31-115 6-94 (109)
90 2lea_A Serine/arginine-rich sp 99.8 2.5E-21 8.5E-26 117.5 6.1 86 30-115 44-129 (135)
91 2cpj_A Non-POU domain-containi 99.8 3.6E-20 1.2E-24 106.7 10.3 81 29-115 11-91 (99)
92 1wg5_A Heterogeneous nuclear r 99.8 4.1E-20 1.4E-24 107.4 10.6 83 29-113 11-94 (104)
93 2nlw_A Eukaryotic translation 99.8 1.7E-20 5.8E-25 109.2 9.0 83 30-114 12-101 (105)
94 2db1_A Heterogeneous nuclear r 99.8 3.7E-20 1.3E-24 109.9 10.5 81 30-112 14-97 (118)
95 2xnq_A Nuclear polyadenylated 99.8 5.9E-20 2E-24 105.5 11.0 82 26-115 15-97 (97)
96 1wex_A Hypothetical protein (r 99.8 4.2E-20 1.4E-24 107.4 10.4 80 30-115 12-93 (104)
97 2ad9_A Polypyrimidine tract-bi 99.8 3.1E-20 1.1E-24 110.2 9.9 81 29-115 27-109 (119)
98 1x4c_A Splicing factor, argini 99.8 1.1E-19 3.6E-24 106.3 12.0 79 30-115 12-95 (108)
99 1wez_A HnRNP H', FTP-3, hetero 99.8 5.5E-20 1.9E-24 106.6 10.7 83 29-114 11-93 (102)
100 1why_A Hypothetical protein ri 99.8 5.9E-20 2E-24 105.4 10.5 82 29-116 13-96 (97)
101 2a3j_A U1 small nuclear ribonu 99.8 2.2E-20 7.7E-25 112.1 8.9 83 29-114 25-111 (127)
102 2ki2_A SS-DNA binding protein 99.8 2E-21 7E-26 110.0 4.0 80 34-114 2-81 (90)
103 2mss_A Protein (musashi1); RNA 99.8 5E-21 1.7E-25 105.0 5.5 75 35-110 1-75 (75)
104 1nu4_A U1A RNA binding domain; 99.8 1.9E-20 6.6E-25 107.3 8.0 83 30-115 5-91 (97)
105 2cpx_A Hypothetical protein FL 99.8 8.5E-21 2.9E-25 111.9 6.6 83 29-115 21-107 (115)
106 2ytc_A PRE-mRNA-splicing facto 99.8 8.7E-20 3E-24 102.2 10.4 76 30-111 9-85 (85)
107 2jvo_A Nucleolar protein 3; nu 99.8 5.7E-20 2E-24 107.5 9.9 80 29-116 27-106 (108)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8.4E-21 2.9E-25 104.5 5.8 76 34-110 1-76 (77)
109 1fjc_A Nucleolin RBD2, protein 99.8 4.8E-20 1.6E-24 105.5 9.1 82 30-116 13-94 (96)
110 2dgt_A RNA-binding protein 30; 99.8 2.2E-19 7.4E-24 102.1 11.8 78 30-115 7-84 (92)
111 1wel_A RNA-binding protein 12; 99.8 9.9E-21 3.4E-25 113.2 6.4 83 29-112 21-103 (124)
112 4f02_A Polyadenylate-binding p 99.8 1.3E-19 4.5E-24 117.1 12.0 83 31-113 13-95 (213)
113 2hgl_A HNRPF protein, heteroge 99.8 2.4E-20 8.1E-25 113.2 7.9 82 29-112 40-124 (136)
114 2e5j_A Methenyltetrahydrofolat 99.8 5.9E-20 2E-24 105.4 9.1 84 27-115 13-96 (97)
115 2cpd_A Apobec-1 stimulating pr 99.8 4.6E-19 1.6E-23 102.0 12.6 79 29-115 11-91 (99)
116 3lqv_A PRE-mRNA branch site pr 99.8 7.4E-20 2.5E-24 107.9 9.3 80 30-112 5-84 (115)
117 1fj7_A Nucleolin RBD1, protein 99.8 2.9E-21 9.8E-26 111.6 2.9 85 30-116 14-98 (101)
118 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-19 4.2E-24 106.1 9.8 80 30-115 22-101 (109)
119 1x4f_A Matrin 3; structural ge 99.8 1.8E-19 6.2E-24 105.8 10.4 80 30-115 22-104 (112)
120 3md3_A Nuclear and cytoplasmic 99.8 6.5E-19 2.2E-23 109.0 13.6 83 29-111 83-165 (166)
121 3q2s_C Cleavage and polyadenyl 99.8 4.8E-20 1.6E-24 120.7 8.8 81 32-112 67-149 (229)
122 1wf1_A RNA-binding protein RAL 99.8 2.6E-19 8.9E-24 104.9 11.0 78 29-114 23-101 (110)
123 1fxl_A Paraneoplastic encephal 99.8 3.7E-19 1.3E-23 110.2 12.3 82 33-114 2-83 (167)
124 2dnp_A RNA-binding protein 14; 99.8 1.9E-19 6.4E-24 101.9 9.9 80 29-116 5-84 (90)
125 2dnn_A RNA-binding protein 12; 99.8 1.7E-19 5.7E-24 105.7 9.9 80 30-112 13-92 (109)
126 2la4_A Nuclear and cytoplasmic 99.8 1E-19 3.4E-24 105.1 8.6 77 31-113 25-101 (101)
127 2yh0_A Splicing factor U2AF 65 99.8 5E-19 1.7E-23 112.6 12.6 87 30-116 111-197 (198)
128 2dgu_A Heterogeneous nuclear r 99.8 3E-19 1E-23 103.5 10.5 78 30-115 8-85 (103)
129 1b7f_A Protein (SXL-lethal pro 99.8 2.5E-19 8.4E-24 111.3 10.8 83 32-114 2-84 (168)
130 2wbr_A GW182, gawky, LD47780P; 99.8 1.4E-19 4.8E-24 101.3 8.6 73 33-111 7-79 (89)
131 2krb_A Eukaryotic translation 99.8 2.9E-20 1E-24 103.4 5.5 73 33-107 1-80 (81)
132 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-19 3.7E-24 106.8 7.9 80 30-113 25-105 (111)
133 2lmi_A GRSF-1, G-rich sequence 99.8 3.1E-20 1.1E-24 108.4 5.4 82 29-112 7-91 (107)
134 2lcw_A RNA-binding protein FUS 99.7 1.9E-21 6.5E-26 115.0 0.0 86 30-115 4-97 (116)
135 2cqh_A IGF-II mRNA-binding pro 99.8 1.5E-19 5.2E-24 102.8 7.9 80 30-116 5-86 (93)
136 2i2y_A Fusion protein consists 99.8 2.1E-19 7.1E-24 110.6 9.1 82 29-115 69-150 (150)
137 2kvi_A Nuclear polyadenylated 99.8 1.9E-19 6.6E-24 103.1 8.3 78 30-115 7-85 (96)
138 2xs2_A Deleted in azoospermia- 99.8 1.1E-19 3.7E-24 105.1 7.2 80 31-113 7-86 (102)
139 2f3j_A RNA and export factor b 99.8 2E-19 7E-24 113.5 9.0 84 29-113 84-167 (177)
140 1x5p_A Negative elongation fac 99.8 2.4E-18 8.2E-23 98.6 12.7 80 28-115 10-89 (97)
141 2hvz_A Splicing factor, argini 99.8 9.5E-20 3.2E-24 105.2 6.2 77 34-115 1-77 (101)
142 1l3k_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 111.0 11.5 84 29-113 9-92 (196)
143 3egn_A RNA-binding protein 40; 99.8 6.6E-19 2.3E-23 107.5 10.0 83 29-114 41-131 (143)
144 2qfj_A FBP-interacting repress 99.8 1.2E-18 4.3E-23 112.1 11.8 84 31-114 123-206 (216)
145 3pgw_S U1-70K; protein-RNA com 99.8 9.6E-19 3.3E-23 123.7 12.2 83 31-113 100-182 (437)
146 2g4b_A Splicing factor U2AF 65 99.8 1.5E-18 5E-23 108.2 11.4 82 30-111 91-172 (172)
147 1whx_A Hypothetical protein ri 99.8 2.1E-19 7E-24 105.6 6.9 77 31-113 8-84 (111)
148 1iqt_A AUF1, heterogeneous nuc 99.8 3E-20 1E-24 101.8 3.0 75 35-110 1-75 (75)
149 2e44_A Insulin-like growth fac 99.8 4.7E-19 1.6E-23 101.3 8.0 80 30-113 12-92 (96)
150 2e5g_A U6 snRNA-specific termi 99.8 1.7E-18 5.7E-23 98.8 10.2 78 31-114 6-83 (94)
151 2j8a_A Histone-lysine N-methyl 99.8 1.2E-18 4.1E-23 103.7 8.8 79 34-112 3-95 (136)
152 1wg1_A KIAA1579 protein, homol 99.8 2.4E-18 8.3E-23 97.0 9.6 75 32-113 4-78 (88)
153 2dha_A FLJ20171 protein; RRM d 99.8 3.7E-19 1.3E-23 106.2 6.3 80 31-112 21-104 (123)
154 2hgm_A HNRPF protein, heteroge 99.8 4.4E-19 1.5E-23 106.3 6.6 81 29-112 38-120 (126)
155 1l3k_A Heterogeneous nuclear r 99.8 5.4E-18 1.9E-22 107.6 11.7 83 31-114 102-184 (196)
156 2diu_A KIAA0430 protein; struc 99.8 1.8E-18 6.3E-23 97.8 8.3 75 31-115 6-86 (96)
157 1b7f_A Protein (SXL-lethal pro 99.8 1E-17 3.4E-22 104.0 11.9 81 30-110 86-168 (168)
158 3md3_A Nuclear and cytoplasmic 99.8 5.7E-18 1.9E-22 104.7 10.6 80 34-114 1-80 (166)
159 2cjk_A Nuclear polyadenylated 99.8 1E-18 3.6E-23 108.4 7.2 81 32-113 86-166 (167)
160 3zzy_A Polypyrimidine tract-bi 99.8 1.4E-17 4.8E-22 100.0 11.8 77 33-114 28-107 (130)
161 2hgn_A Heterogeneous nuclear r 99.8 1.9E-19 6.6E-24 109.6 3.6 82 30-114 43-124 (139)
162 4f02_A Polyadenylate-binding p 99.8 5.8E-18 2E-22 109.4 10.7 80 32-113 102-181 (213)
163 3tyt_A Heterogeneous nuclear r 99.8 6.8E-18 2.3E-22 108.7 10.6 77 31-112 2-79 (205)
164 3d2w_A TAR DNA-binding protein 99.8 7E-18 2.4E-22 95.4 9.5 77 30-115 8-86 (89)
165 1sjr_A Polypyrimidine tract-bi 99.8 1.1E-17 3.8E-22 103.9 10.2 79 32-114 45-125 (164)
166 3nmr_A Cugbp ELAV-like family 99.8 1.3E-17 4.3E-22 104.1 10.6 83 32-114 2-89 (175)
167 2qfj_A FBP-interacting repress 99.8 5.5E-18 1.9E-22 109.0 9.0 82 32-113 27-108 (216)
168 1fxl_A Paraneoplastic encephal 99.8 1.4E-17 4.8E-22 103.0 10.5 81 30-110 85-167 (167)
169 3beg_B Splicing factor, argini 99.7 3.2E-18 1.1E-22 101.1 7.1 75 31-112 14-93 (115)
170 2dnl_A Cytoplasmic polyadenyla 99.7 4.5E-18 1.5E-22 100.2 7.7 74 31-107 6-82 (114)
171 2cq2_A Hypothetical protein LO 99.7 6.2E-18 2.1E-22 99.4 8.1 78 30-113 22-106 (114)
172 1fje_B Nucleolin RBD12, protei 99.7 2.2E-17 7.6E-22 103.2 11.2 80 30-114 96-175 (175)
173 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-17 9E-22 110.0 11.9 82 30-114 6-91 (282)
174 2e5i_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 96.4 11.9 74 35-114 27-103 (124)
175 2bz2_A Negative elongation fac 99.7 1.7E-17 5.9E-22 98.8 9.2 79 29-115 35-113 (121)
176 2hzc_A Splicing factor U2AF 65 99.7 1.4E-17 4.7E-22 93.5 7.9 72 31-109 4-86 (87)
177 3nmr_A Cugbp ELAV-like family 99.7 3.2E-17 1.1E-21 102.2 10.3 81 30-111 92-175 (175)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 6.8E-18 2.3E-22 95.1 6.2 78 31-115 3-80 (88)
179 2cjk_A Nuclear polyadenylated 99.7 1.6E-17 5.5E-22 103.0 8.1 79 32-112 2-80 (167)
180 2voo_A Lupus LA protein; RNA-b 99.7 7.1E-17 2.4E-21 103.1 11.2 79 32-112 108-186 (193)
181 3smz_A Protein raver-1, ribonu 99.7 9.4E-17 3.2E-21 107.4 12.1 84 31-114 93-176 (284)
182 2pe8_A Splicing factor 45; RRM 99.7 1.4E-16 4.8E-21 92.6 11.3 82 31-112 6-93 (105)
183 2ghp_A U4/U6 snRNA-associated 99.7 3.6E-17 1.2E-21 109.8 10.0 83 30-113 207-291 (292)
184 3smz_A Protein raver-1, ribonu 99.7 1.4E-16 4.7E-21 106.6 12.1 84 30-114 181-265 (284)
185 3u1l_A PRE-mRNA-splicing facto 99.7 3.3E-17 1.1E-21 107.5 7.8 79 30-114 131-230 (240)
186 2adc_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 106.3 7.8 79 30-113 31-110 (229)
187 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-16 8.7E-21 105.2 11.6 77 30-111 204-281 (282)
188 3sde_A Paraspeckle component 1 99.7 2.9E-16 9.8E-21 104.3 10.7 80 28-113 17-96 (261)
189 2dit_A HIV TAT specific factor 99.7 1.2E-15 4E-20 89.5 11.6 82 29-114 11-103 (112)
190 1fje_B Nucleolin RBD12, protei 99.7 2.2E-17 7.5E-22 103.3 3.3 84 29-114 9-92 (175)
191 1qm9_A Polypyrimidine tract-bi 99.7 1.3E-16 4.5E-21 101.6 6.3 77 32-113 2-79 (198)
192 2ghp_A U4/U6 snRNA-associated 99.6 6.7E-16 2.3E-20 103.6 8.6 82 32-114 116-198 (292)
193 2adc_A Polypyrimidine tract-bi 99.6 9.3E-16 3.2E-20 100.0 9.0 78 31-113 149-228 (229)
194 1qm9_A Polypyrimidine tract-bi 99.6 7.3E-16 2.5E-20 98.1 8.1 78 31-113 118-197 (198)
195 3sde_A Paraspeckle component 1 99.6 3E-15 1E-19 99.3 10.1 81 32-113 95-179 (261)
196 2g4b_A Splicing factor U2AF 65 99.6 2.2E-15 7.4E-20 93.7 8.8 75 32-113 3-88 (172)
197 3tyt_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 98.4 7.6 78 31-110 121-204 (205)
198 3v4m_A Splicing factor U2AF 65 99.6 6.7E-15 2.3E-19 85.5 8.9 81 32-112 4-96 (105)
199 2yh0_A Splicing factor U2AF 65 99.6 3.9E-15 1.3E-19 94.5 8.6 75 32-113 3-88 (198)
200 3ue2_A Poly(U)-binding-splicin 99.6 1.6E-14 5.6E-19 85.5 10.2 80 32-111 19-107 (118)
201 1jmt_A Splicing factor U2AF 35 99.6 7.8E-16 2.7E-20 89.3 3.8 72 38-110 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.8E-13 6.2E-18 78.7 10.9 76 33-115 10-92 (100)
203 3tht_A Alkylated DNA repair pr 99.5 1.1E-13 3.8E-18 95.1 8.6 76 30-111 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.4 1.3E-12 4.4E-17 76.8 9.8 76 32-111 6-91 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 6.1E-12 2.1E-16 70.5 9.6 79 29-116 3-89 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.4E-11 4.6E-16 72.9 9.0 76 28-109 13-92 (121)
207 3dxb_A Thioredoxin N-terminall 99.1 2.1E-10 7.3E-15 74.2 8.1 66 46-111 142-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 99.1 3.6E-10 1.2E-14 63.6 6.5 74 29-111 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.8 7.9E-08 2.7E-12 55.3 8.6 73 30-108 18-95 (117)
210 1whv_A Poly(A)-specific ribonu 98.1 2.9E-05 9.8E-10 43.8 7.5 57 30-95 13-69 (100)
211 1uw4_A UPF3X; nonsense mediate 98.0 0.00021 7.2E-09 39.9 10.0 79 34-112 2-87 (91)
212 3ctr_A Poly(A)-specific ribonu 97.9 3.9E-05 1.3E-09 43.4 5.6 55 33-96 6-60 (101)
213 1wey_A Calcipressin 1; structu 97.9 5.1E-05 1.7E-09 43.3 6.1 74 33-112 5-83 (104)
214 2dhx_A Poly (ADP-ribose) polym 97.6 0.0014 4.6E-08 37.3 9.4 70 31-109 6-80 (104)
215 1wwh_A Nucleoporin 35, nucleop 97.6 0.00058 2E-08 39.9 7.9 73 30-110 21-94 (119)
216 2l08_A Regulator of nonsense t 97.4 0.001 3.5E-08 37.5 6.9 80 33-112 9-95 (97)
217 3p3d_A Nucleoporin 53; structu 96.8 0.0017 6E-08 38.5 4.1 77 33-111 7-97 (132)
218 2kn4_A Immunoglobulin G-bindin 96.1 0.0093 3.2E-07 35.9 4.3 34 62-97 2-35 (158)
219 3pq1_A Poly(A) RNA polymerase; 95.5 0.0099 3.4E-07 42.5 3.2 56 32-93 52-107 (464)
220 2i2y_A Fusion protein consists 95.0 0.0075 2.6E-07 36.1 1.1 40 72-112 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 94.2 0.25 8.5E-06 35.7 7.6 56 32-96 439-494 (507)
222 2g0c_A ATP-dependent RNA helic 52.3 22 0.00077 18.1 4.8 58 45-111 13-75 (76)
223 3lpe_A Putative transcription 38.0 32 0.0011 18.6 2.8 25 74-98 49-73 (92)
224 2lfv_A Protein DAMX; cell divi 43.2 7.2 0.00025 22.0 0.0 64 31-98 23-87 (106)
225 4bby_A Alkyldihydroxyacetoneph 35.1 74 0.0025 23.7 5.1 56 39-95 349-408 (658)
226 1ytr_A Bacteriocin plantaricin 29.1 33 0.0011 13.6 1.3 12 47-58 14-25 (26)
227 3uzu_A Ribosomal RNA small sub 28.5 32 0.0011 22.6 2.1 34 34-67 115-148 (279)
228 3fut_A Dimethyladenosine trans 25.8 69 0.0024 20.9 3.3 31 34-65 111-141 (271)
229 3h7h_B Transcription elongatio 23.8 55 0.0019 18.3 2.2 25 74-98 50-74 (106)
230 3p8b_B Transcription antitermi 22.8 78 0.0027 18.6 2.9 25 74-98 42-66 (152)
231 1qyr_A KSGA, high level kasuga 22.5 1.1E+02 0.0039 19.6 3.8 29 35-63 92-120 (252)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=9e-25 Score=126.27 Aligned_cols=82 Identities=32% Similarity=0.489 Sum_probs=78.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
-.+++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy13319 111 TN 112 (117)
Q Consensus 111 ~~ 112 (117)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 2
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.90 E-value=7.3e-23 Score=120.30 Aligned_cols=83 Identities=17% Similarity=0.189 Sum_probs=79.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
++.++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|+..|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 3
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=2.3e-22 Score=116.66 Aligned_cols=87 Identities=29% Similarity=0.512 Sum_probs=82.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 4
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.90 E-value=1.4e-22 Score=113.15 Aligned_cols=82 Identities=29% Similarity=0.509 Sum_probs=78.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q psy13319 113 KG 114 (117)
Q Consensus 113 ~~ 114 (117)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 5
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.90 E-value=9.4e-23 Score=114.82 Aligned_cols=85 Identities=36% Similarity=0.632 Sum_probs=77.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
+++++
T Consensus 83 a~~kp 87 (87)
T 3bs9_A 83 ATRKP 87 (87)
T ss_dssp EC---
T ss_pred cCCCC
Confidence 98753
No 6
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=3.7e-22 Score=115.17 Aligned_cols=87 Identities=17% Similarity=0.328 Sum_probs=80.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
++++++.+
T Consensus 92 ~a~~~~~~ 99 (100)
T 2do4_A 92 ISNSGPSS 99 (100)
T ss_dssp ECCCCSCC
T ss_pred ECCCCCCC
Confidence 99987653
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=3.8e-22 Score=117.80 Aligned_cols=87 Identities=33% Similarity=0.574 Sum_probs=81.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++..
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9886543
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=2.5e-22 Score=114.74 Aligned_cols=86 Identities=29% Similarity=0.485 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
....++.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEecC
Q psy13319 107 VSFKTN 112 (117)
Q Consensus 107 v~~a~~ 112 (117)
|.++++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=116.04 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=80.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34677899999999999999999999999999999999998889999999999999999999999 99999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
+++++..+
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=8e-24 Score=120.52 Aligned_cols=84 Identities=14% Similarity=0.303 Sum_probs=77.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEeCCeEEEEEEe
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN-GYALGNRILQVSFK 110 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~a 110 (117)
+.+|||+|||+++++++|+++|+.|| .|..++++.++.+|.++|||||+|.+.++|++|++.++ +..+.|+.|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36799999999999999999999999 79999999999999999999999999999999999774 56799999999999
Q ss_pred cCCCCC
Q psy13319 111 TNKGKT 116 (117)
Q Consensus 111 ~~~~~~ 116 (117)
+++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887653
No 11
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.2e-22 Score=118.19 Aligned_cols=89 Identities=24% Similarity=0.395 Sum_probs=82.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCCCC
Q psy13319 108 SFKTNKGKT 116 (117)
Q Consensus 108 ~~a~~~~~~ 116 (117)
.+++++.++
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 12
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=2.2e-22 Score=118.88 Aligned_cols=88 Identities=42% Similarity=0.601 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.4e-22 Score=115.77 Aligned_cols=86 Identities=31% Similarity=0.391 Sum_probs=81.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46778999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=1.7e-22 Score=113.32 Aligned_cols=82 Identities=29% Similarity=0.505 Sum_probs=78.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|+|||+|.+.++|++|+..|+|..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45788999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ec
Q psy13319 110 KT 111 (117)
Q Consensus 110 a~ 111 (117)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.4e-22 Score=117.28 Aligned_cols=88 Identities=28% Similarity=0.467 Sum_probs=82.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 16
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=5.4e-22 Score=115.39 Aligned_cols=87 Identities=29% Similarity=0.436 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC---eEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN---RIL 105 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g---~~l 105 (117)
..++.++|||+|||..+++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|++|+..|++..+.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34578899999999999999999999999999999999987 78999999999999999999999999999887 999
Q ss_pred EEEEecCCCCC
Q psy13319 106 QVSFKTNKGKT 116 (117)
Q Consensus 106 ~v~~a~~~~~~ 116 (117)
+|.+++.++.+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 17
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=116.85 Aligned_cols=88 Identities=24% Similarity=0.432 Sum_probs=82.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE---
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQ-SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI--- 104 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~--- 104 (117)
...+.++|||+|||.++++++|+++|..||.|. .+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 346788999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred -EEEEEecCCCCC
Q psy13319 105 -LQVSFKTNKGKT 116 (117)
Q Consensus 105 -l~v~~a~~~~~~ 116 (117)
|+|.|+++.+..
T Consensus 85 ~l~v~~a~~~~~~ 97 (99)
T 2div_A 85 RFKLNYATYSGPS 97 (99)
T ss_dssp ECCEEETTCCSSS
T ss_pred eEEEeecCCCCCC
Confidence 999999887654
No 18
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=4.4e-22 Score=113.57 Aligned_cols=83 Identities=25% Similarity=0.434 Sum_probs=78.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34667889999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 19
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=3.8e-22 Score=117.06 Aligned_cols=88 Identities=24% Similarity=0.417 Sum_probs=81.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CcEeC
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN------GYALG 101 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------~~~~~ 101 (117)
....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..++ +..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678899999999999999999999999999999999998899999999999999999999999999 99999
Q ss_pred CeEEEEEEecCCCC
Q psy13319 102 NRILQVSFKTNKGK 115 (117)
Q Consensus 102 g~~l~v~~a~~~~~ 115 (117)
|+.|+|.++.++.+
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999987654
No 20
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=3.6e-22 Score=116.94 Aligned_cols=87 Identities=29% Similarity=0.550 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...++.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+..++|..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33567789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy13319 108 SFKTNKG 114 (117)
Q Consensus 108 ~~a~~~~ 114 (117)
++++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998765
No 21
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=114.10 Aligned_cols=85 Identities=28% Similarity=0.553 Sum_probs=80.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+++++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13319 111 TNKGK 115 (117)
Q Consensus 111 ~~~~~ 115 (117)
+++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 22
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3e-22 Score=116.65 Aligned_cols=87 Identities=26% Similarity=0.481 Sum_probs=81.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...++++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
++.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 23
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=114.64 Aligned_cols=84 Identities=24% Similarity=0.338 Sum_probs=78.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS--------VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
......++|||+|||.++++++|+++|+.||.|.. +.++.++.+|.++|||||+|.+.++|++|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567789999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeEEEEEEec
Q psy13319 100 LGNRILQVSFKT 111 (117)
Q Consensus 100 ~~g~~l~v~~a~ 111 (117)
+.|+.|+|.+|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=3.7e-22 Score=114.45 Aligned_cols=83 Identities=25% Similarity=0.557 Sum_probs=78.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
++++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|++|+..++|..+.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.88 E-value=6.5e-22 Score=117.29 Aligned_cols=83 Identities=41% Similarity=0.630 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|+|..+.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34577899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 26
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=112.93 Aligned_cols=85 Identities=27% Similarity=0.453 Sum_probs=79.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..|| |..+.++.++.++.++|||||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999989999999999999999999999 799999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
++++++.
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 27
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=4.4e-22 Score=116.71 Aligned_cols=87 Identities=25% Similarity=0.457 Sum_probs=81.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...++++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
++.+++.
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987654
No 28
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=116.77 Aligned_cols=86 Identities=26% Similarity=0.337 Sum_probs=80.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++..+.
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 986543
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=116.14 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=75.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCC--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----EeCCeE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGA--VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGY----ALGNRI 104 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~ 104 (117)
..=.+|||+|||+.+++++|+++|++||. +..++++.++.+|.++|||||+|.+.++|++|++.|+|. .++|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34467999999999999999999999995 578999999999999999999999999999999999986 589999
Q ss_pred EEEEEecC
Q psy13319 105 LQVSFKTN 112 (117)
Q Consensus 105 l~v~~a~~ 112 (117)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999875
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2e-22 Score=116.63 Aligned_cols=88 Identities=32% Similarity=0.519 Sum_probs=81.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567889999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99887554
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=113.59 Aligned_cols=86 Identities=29% Similarity=0.497 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....+.++|||+|||+.+++++|+++|..||.|..+.+..+ ++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557889999999999999999999999999999999887 7899999999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++.+
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987654
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.1e-22 Score=115.17 Aligned_cols=87 Identities=23% Similarity=0.381 Sum_probs=80.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRD-LQTNKCKGFGFVTMTNYDEAVVAIQSL-NGYALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~ 106 (117)
...+.++|||+|||..+++++|+++|..||.|..+.++.+ +.++.++|||||+|.+.++|++|+..| ++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3567789999999999999999999999999999999888 678999999999999999999999999 99999999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.+++++..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987553
No 33
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=119.54 Aligned_cols=88 Identities=28% Similarity=0.468 Sum_probs=82.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
+++.+.++
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.3e-22 Score=114.50 Aligned_cols=85 Identities=34% Similarity=0.637 Sum_probs=79.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSV-KVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++++|||+|||..+++++|+++|..||.|..+ .++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999888899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 886554
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-21 Score=113.37 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=78.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQT-NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+.++|||+|||..+++++|+++|..|| |..+.++.++.+ +.++|||||+|.+.++|++|+ .+++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999999887 899999999999999999999 899999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987654
No 36
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=4.3e-22 Score=120.00 Aligned_cols=88 Identities=30% Similarity=0.515 Sum_probs=82.2
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
....++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy13319 107 VSFKTNKG 114 (117)
Q Consensus 107 v~~a~~~~ 114 (117)
|.++++++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998765
No 37
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=4.5e-22 Score=115.88 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=80.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe---CCeEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL---GNRIL 105 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~l 105 (117)
...+.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 356778999999999999999999999999999999999988899999999999999999999999999887 88999
Q ss_pred EEEEecCCCC
Q psy13319 106 QVSFKTNKGK 115 (117)
Q Consensus 106 ~v~~a~~~~~ 115 (117)
+|.+++++.+
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=7.9e-22 Score=113.35 Aligned_cols=85 Identities=26% Similarity=0.388 Sum_probs=78.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQ---TNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
++.++|||+|||.++++++|+++|..||.|..+.+..++. ++.++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567899999999999999999999999999999988765 5688999999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++.+
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99887554
No 39
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-21 Score=115.17 Aligned_cols=87 Identities=23% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQ--------SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
...+.++|||+|||.++++++|+++|..||.|. .+.++.++.++.++|||||+|.+.++|++|+..|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 346788999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCeEEEEEEecCCCC
Q psy13319 101 GNRILQVSFKTNKGK 115 (117)
Q Consensus 101 ~g~~l~v~~a~~~~~ 115 (117)
.|+.|+|.+++.+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999887654
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.88 E-value=2.8e-21 Score=112.70 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||..+++++|+++|..||.|..+.++.++ ++.++|+|||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 45678999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
+++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 41
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.3e-21 Score=112.19 Aligned_cols=85 Identities=26% Similarity=0.339 Sum_probs=77.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLW----QLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
...++++|||+|||.++++++|+ ++|..||.|..+.++.++.+ +|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34567899999999999999999 99999999999999888654 789999999999999999999999999999
Q ss_pred EEEEEecCCCCC
Q psy13319 105 LQVSFKTNKGKT 116 (117)
Q Consensus 105 l~v~~a~~~~~~ 116 (117)
|+|.++++....
T Consensus 82 l~V~~a~~~~~~ 93 (96)
T 2dgx_A 82 ILVSLATGASGP 93 (96)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877654
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=1.5e-21 Score=115.43 Aligned_cols=80 Identities=33% Similarity=0.513 Sum_probs=74.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
..+|||+|||+++++++|+++|..||.|..++++.++ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999999885 45789999999999999999999999999999999999876
Q ss_pred CC
Q psy13319 113 KG 114 (117)
Q Consensus 113 ~~ 114 (117)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 43
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=1.1e-21 Score=112.76 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999888788888889999999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
++....
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 987543
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=7.1e-21 Score=110.31 Aligned_cols=87 Identities=29% Similarity=0.410 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.....+.++|||+|||.++++++|+++|..||.|..+.++.++. .++|||||+|.+.++|++|+..|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456778999999999999999999999999999999988753 3789999999999999999999999999999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.+++++..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999987654
No 45
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=5.4e-21 Score=108.52 Aligned_cols=84 Identities=15% Similarity=0.284 Sum_probs=78.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||.++++++|+++|..| .|..+.++.+ .+|.++|+|||+|.+.++|++|+. +++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 8999999998 789999999999999999999999 999999999999999
Q ss_pred ecCCCCC
Q psy13319 110 KTNKGKT 116 (117)
Q Consensus 110 a~~~~~~ 116 (117)
+++++++
T Consensus 84 a~~~~~s 90 (91)
T 2dgw_A 84 EKSGPSS 90 (91)
T ss_dssp ESSCCCC
T ss_pred CCcCCCC
Confidence 9887653
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=1.1e-22 Score=115.48 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=72.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFG--AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.+|||+|||.++++++|+++|..|| .|..+.++.++.+|.++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q psy13319 112 NKGK 115 (117)
Q Consensus 112 ~~~~ 115 (117)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5e-21 Score=110.96 Aligned_cols=86 Identities=23% Similarity=0.409 Sum_probs=77.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....+.++|||+|||..+++++|+++|..||.|..+.++.++. .++|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456778999999999999999999999999999999988754 35899999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987543
No 48
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.87 E-value=1.6e-21 Score=114.30 Aligned_cols=89 Identities=26% Similarity=0.416 Sum_probs=76.4
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 26 ANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.....++.++|||+|||.++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+..+ +..+.|+.|
T Consensus 18 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 18 GSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp --------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 3344567889999999999999999999999999999999999888999999999999999999999975 688999999
Q ss_pred EEEEecCCCC
Q psy13319 106 QVSFKTNKGK 115 (117)
Q Consensus 106 ~v~~a~~~~~ 115 (117)
+|.++.++..
T Consensus 97 ~V~~a~~~~~ 106 (109)
T 2rs2_A 97 DPKVAFPRRA 106 (109)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=109.82 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNK-CKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..++|||+|||.++++++|+++|..||.|..+.++.++.++. ++|+|||+|.+.++|++|+..|+|..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999988877665 7999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy13319 111 TNKGK 115 (117)
Q Consensus 111 ~~~~~ 115 (117)
.+.+.
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=110.94 Aligned_cols=83 Identities=31% Similarity=0.452 Sum_probs=77.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||+.+++++|+++|..||.|..+.++.++. +.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 346778999999999999999999999999999999999875 8899999999999999999999999999999999999
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 51
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=5.3e-21 Score=118.41 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=80.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45778999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+++.+.
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986543
No 52
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.87 E-value=4.6e-21 Score=107.93 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 35677899999999999999999999999999999999999899999999999999999999997 48889999999998
Q ss_pred Ee
Q psy13319 109 FK 110 (117)
Q Consensus 109 ~a 110 (117)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 53
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=121.73 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=76.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFG--AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..++|||+|||+++++++|+++|..|| .|..+.++.++.+|.++|||||+|.+.++|++|+..|+|..+.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 54
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=115.82 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=79.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|++|+..|+|..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999987 899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 886543
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.9e-21 Score=113.65 Aligned_cols=86 Identities=30% Similarity=0.378 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.....+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..+++ .+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 33456778999999999999999999999999999999999988899999999999999999999999998 89999999
Q ss_pred EEEecCC
Q psy13319 107 VSFKTNK 113 (117)
Q Consensus 107 v~~a~~~ 113 (117)
|.++...
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9998653
No 56
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.87 E-value=1.1e-21 Score=117.44 Aligned_cols=87 Identities=26% Similarity=0.483 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....++++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy13319 108 SFKTNKG 114 (117)
Q Consensus 108 ~~a~~~~ 114 (117)
.++.++.
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9987544
No 57
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=111.13 Aligned_cols=84 Identities=30% Similarity=0.359 Sum_probs=78.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999886 58899999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
+++..
T Consensus 90 ~a~~~ 94 (114)
T 2do0_A 90 MDERA 94 (114)
T ss_dssp ECSCC
T ss_pred EcccC
Confidence 98743
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=2.7e-22 Score=115.95 Aligned_cols=83 Identities=28% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCC------CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC-e
Q psy13319 31 GSGWCIFVYNLAP------ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN-R 103 (117)
Q Consensus 31 ~~~~~l~v~~Lp~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~ 103 (117)
..+++|||+|||. .+++++|+++|+.||.|..+.++.++.||.++|||||+|.+.++|++|+..|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEecCC
Q psy13319 104 ILQVSFKTNK 113 (117)
Q Consensus 104 ~l~v~~a~~~ 113 (117)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998753
No 59
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=2.7e-21 Score=109.19 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=77.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.++|||+|||.++++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|++|+ .+++..+.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4578999999999999999999999999999999999889999999999999999999999 899999999999999988
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=2.9e-21 Score=109.73 Aligned_cols=84 Identities=26% Similarity=0.323 Sum_probs=77.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||.++++++|+++|..||.|..+.+..+ ++.++|||||+|.+.++|+.|+..|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 457789999999999999999999999999999998874 688999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 61
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=112.98 Aligned_cols=86 Identities=24% Similarity=0.321 Sum_probs=80.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||+.+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 356788999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9886553
No 62
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=1.6e-20 Score=112.24 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=79.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..+.+++|||+|||..+++++|+++|..||.|..+.+..++ +|.++|||||+|.+.++|+.|+..++|..+.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45677899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 988654
No 63
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.8e-21 Score=110.98 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=76.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....+.++|||+|||.++++++|+++|..||.|..+.+..+ +.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33457789999999999999999999999999999988544 567899999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.+++++++
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4a_A 94 EFPRSGRG 101 (109)
T ss_dssp ECCCCCCC
T ss_pred EEcccCCC
Confidence 99987654
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=113.30 Aligned_cols=85 Identities=28% Similarity=0.535 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcC-CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE-eCCeEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGP-FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA-LGNRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~g~~l~v 107 (117)
.++.++|||+|||.++++++|+++|.. ||.|..+.++.++ ++.++|||||+|.+.++|..|+..+++.. +.|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456788999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99876543
No 65
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.9e-20 Score=108.44 Aligned_cols=84 Identities=30% Similarity=0.430 Sum_probs=77.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. ++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567889999999999999999999999999999999998899999999999999999999999 47889999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+.++.+
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 887543
No 66
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=1.6e-21 Score=111.49 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+..++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999998888888888899999999999999999999999999999999999998
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 764
No 67
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=6.8e-22 Score=114.21 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDL-QTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
......++|||+|||.++++++|+++|..|| |..+.++.++ .+|.++|||||+|.+.++|.+|+ .++|..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456789999999999999999999999999 9999999887 58999999999999999999999 7999999999999
Q ss_pred EEEecCCC
Q psy13319 107 VSFKTNKG 114 (117)
Q Consensus 107 v~~a~~~~ 114 (117)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=7.2e-22 Score=114.61 Aligned_cols=84 Identities=31% Similarity=0.473 Sum_probs=79.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+.++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|++|+..++|..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45678999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
+++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8754
No 69
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.2e-20 Score=110.86 Aligned_cols=85 Identities=24% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHH---HhhcCCCCeEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 31 GSGWCIFVYNLAPETEESVLW---QLFGPFGAVQSVKVIRDLQTN---KCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
...++|||+|||+++++++|+ ++|..||.|..+.++.++.++ .++|||||+|.+.++|++|+..|+|..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 456789999999999999999 999999999999998887643 45699999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy13319 105 LQVSFKTNKGK 115 (117)
Q Consensus 105 l~v~~a~~~~~ 115 (117)
|+|.++.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999987653
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.86 E-value=9.1e-21 Score=118.41 Aligned_cols=86 Identities=26% Similarity=0.465 Sum_probs=79.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...++++|||+|||..+++++|+++|..||.|..+.++.++.+|.++|||||+|.+.+.|+.|+..|+|..+.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
|+..+.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 987544
No 71
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=114.17 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=78.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4568999999999999999999999999999999999988999999999999999999999997 999999999999999
Q ss_pred cCCCC
Q psy13319 111 TNKGK 115 (117)
Q Consensus 111 ~~~~~ 115 (117)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 72
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=114.81 Aligned_cols=84 Identities=29% Similarity=0.484 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.....+.++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|+|..+.|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33456788999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEEe
Q psy13319 107 VSFK 110 (117)
Q Consensus 107 v~~a 110 (117)
|.+|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9885
No 73
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=6.8e-21 Score=117.99 Aligned_cols=86 Identities=27% Similarity=0.364 Sum_probs=80.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+++++.
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987543
No 74
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.86 E-value=5.7e-22 Score=119.68 Aligned_cols=85 Identities=25% Similarity=0.481 Sum_probs=79.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----EeCCe
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS--VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGY----ALGNR 103 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~ 103 (117)
....++|||+|||+++++++|+++|..||.|.. ++++.++.+|.++|||||+|.+. +|.+|+..|+|. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356789999999999999999999999999966 99999998999999999999999 999999999999 99999
Q ss_pred EEEEEEecCCCC
Q psy13319 104 ILQVSFKTNKGK 115 (117)
Q Consensus 104 ~l~v~~a~~~~~ 115 (117)
.|+|.++++..+
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 75
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-20 Score=107.72 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.| .++.+ .++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45678899999999999999999999999977 45555 578899999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++++
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987654
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-21 Score=113.97 Aligned_cols=82 Identities=23% Similarity=0.371 Sum_probs=77.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+ .+++..+.|+.|+|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 35679999999999999999999999999999999999888999999999999999999999 89999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
+++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 753
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-20 Score=106.98 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=72.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCcEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL--NGYALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~~~~~~g~~l~ 106 (117)
..+++++|||+|||+.+++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.|+..+ ++..+.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3467789999999999999999999999999999988754 789999999999999999977 46789999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|+|++.+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999987553
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-21 Score=110.20 Aligned_cols=81 Identities=30% Similarity=0.485 Sum_probs=76.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+++++|||+|||+++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..|+|..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 56789999999999999999999999999999999999888999999999999999999999999999999999988775
Q ss_pred c
Q psy13319 111 T 111 (117)
Q Consensus 111 ~ 111 (117)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-21 Score=111.84 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=73.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG--YALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~ 106 (117)
...+.++|||+|||+++++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.|+..+++ ..+.|+.|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567889999999999999999999999999999998865 78999999999999999998864 789999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.|++.+..
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987654
No 80
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.3e-20 Score=108.58 Aligned_cols=83 Identities=16% Similarity=0.161 Sum_probs=72.2
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE--eCCe
Q psy13319 26 ANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA--LGNR 103 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~ 103 (117)
.....+++++|||+|||..+++++|+++|.+||.|..+.++.. +|+|||+|.+.++|.+|+..+++.. +.|+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 3344567899999999999999999999999999999988743 6899999999999999999998864 7899
Q ss_pred EEEEEEecCCC
Q psy13319 104 ILQVSFKTNKG 114 (117)
Q Consensus 104 ~l~v~~a~~~~ 114 (117)
+|.|+|++.+.
T Consensus 88 ~i~V~~S~~k~ 98 (100)
T 3r27_A 88 PAFVNYSTSQK 98 (100)
T ss_dssp EEEEEECSCSC
T ss_pred EEEEEeccccc
Confidence 99999998754
No 81
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-20 Score=108.97 Aligned_cols=84 Identities=24% Similarity=0.424 Sum_probs=77.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe--------C
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL--------G 101 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--------~ 101 (117)
..+.++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|+.|+..|+|..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4567899999999999999999999999999999999997 899999999999999999999999999988 5
Q ss_pred CeEEEEEEecCCC
Q psy13319 102 NRILQVSFKTNKG 114 (117)
Q Consensus 102 g~~l~v~~a~~~~ 114 (117)
++.|.|.|+++..
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999998653
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=1.5e-20 Score=112.22 Aligned_cols=82 Identities=15% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+ .++|..+.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999988
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 83
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.3e-21 Score=109.96 Aligned_cols=80 Identities=14% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEeCCeEE
Q psy13319 29 MNGSGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG--YALGNRIL 105 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l 105 (117)
..+++++|||+|||+ .+++++|+++|..||.|..+.++.+ +|+|||+|.+.++|..|+..|++ ..+.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345788999999999 9999999999999999999998765 57999999999999999998875 56999999
Q ss_pred EEEEecCCC
Q psy13319 106 QVSFKTNKG 114 (117)
Q Consensus 106 ~v~~a~~~~ 114 (117)
+|++++..+
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998543
No 84
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4e-20 Score=106.90 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=75.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346778899999999999999999999874 56777888889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++.+
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987654
No 85
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=110.38 Aligned_cols=85 Identities=29% Similarity=0.409 Sum_probs=77.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
......++|||+|||.++++++|+++|..||.|..+.+..++ +.++|||||+|.+.++|++|+..|+|..+.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678899999999999999999999999999999998874 447899999999999999999999999999999999
Q ss_pred EEecCCC
Q psy13319 108 SFKTNKG 114 (117)
Q Consensus 108 ~~a~~~~ 114 (117)
.+++++.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9988753
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.1e-21 Score=111.17 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=75.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++. +.++|||||+|.+.++|..|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568899999999999999999999999999999999877 9999999999999999999999 899999999999998
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+.+
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 653
No 87
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-20 Score=105.09 Aligned_cols=80 Identities=30% Similarity=0.433 Sum_probs=73.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||.++++++|+++|..||.|..+.++ ++||||+|.+.++|++|+..+++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34677899999999999999999999999999999886 5699999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
+++++.+.
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876653
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=111.63 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=76.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCe-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAV-QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...+.++|||+|||+++++++|+++|..||.| ..+.++.++ ++.++|||||+|.+.++|++|+.. ++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 889999887 899999999999999999999997 999999999999
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
.++..
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 89
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=110.36 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCC-eEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGA-VQSVKVI-RDLQTNKCKGFGFVTMTNYDEAVVAIQSLN--GYALGNRILQ 106 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 106 (117)
.+.++|||+|||.++++++|+++|..||. |..+.++ .++.++.++|||||+|.+.++|..|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 46789999999999999999999999998 9999888 777888999999999999999999999996 5899999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.|++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987543
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=2.5e-21 Score=117.47 Aligned_cols=86 Identities=27% Similarity=0.364 Sum_probs=80.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678899999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
+++.+.
T Consensus 124 a~~~~~ 129 (135)
T 2lea_A 124 ARYGRP 129 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 91
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=106.65 Aligned_cols=81 Identities=28% Similarity=0.458 Sum_probs=74.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||..+++++|+++|..||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3467789999999999999999999999999999988754 6899999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpj_A 85 FACHSAS 91 (99)
T ss_dssp ESSCCSC
T ss_pred EcCCCCC
Confidence 9987653
No 92
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.1e-20 Score=107.42 Aligned_cols=83 Identities=14% Similarity=0.194 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS-VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
.....++|||+|||+++++++|+++|..||.|.. +.++.+ .+++++|||||+|.+.++|++|+.. ++..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 3456789999999999999999999999999987 778777 7899999999999999999999997 999999999999
Q ss_pred EEecCC
Q psy13319 108 SFKTNK 113 (117)
Q Consensus 108 ~~a~~~ 113 (117)
.++..+
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 988754
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=109.20 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCC------CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe
Q psy13319 30 NGSGWCIFVYNLAPET------EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR 103 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 103 (117)
...+++|||+|||..+ ++++|+++|+.||.|..+.++ +.+|.++|||||+|.+.++|+.|+..|+|..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 779999999999999999887 46789999999999999999999999999999998
Q ss_pred -EEEEEEecCCC
Q psy13319 104 -ILQVSFKTNKG 114 (117)
Q Consensus 104 -~l~v~~a~~~~ 114 (117)
.|+|.++.+..
T Consensus 90 ~~l~V~~a~~~~ 101 (105)
T 2nlw_A 90 HTFRVNLFTDFD 101 (105)
T ss_dssp CEEEEECSCCCC
T ss_pred ceEEEEEcchHh
Confidence 99999987643
No 94
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=3.7e-20 Score=109.91 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGA---VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
..+.++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++|+. +++..+.|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 88999998876 9999999999999999999999 899999999999
Q ss_pred EEEecC
Q psy13319 107 VSFKTN 112 (117)
Q Consensus 107 v~~a~~ 112 (117)
|.++..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998753
No 95
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.84 E-value=5.9e-20 Score=105.53 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=72.0
Q ss_pred CCCCCCCCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 26 ANTMNGSGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 26 ~~~~~~~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
.....+++++|||+|||. ++++++|+++|..||.|..+.+. +|||||+|.+.++|.+|+..++|..+.|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 334456788999999998 99999999999999999998872 689999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy13319 105 LQVSFKTNKGK 115 (117)
Q Consensus 105 l~v~~a~~~~~ 115 (117)
|+|++++.+++
T Consensus 87 l~V~~a~~~~r 97 (97)
T 2xnq_A 87 LILEVSSSNAR 97 (97)
T ss_dssp CEEEECCCCC-
T ss_pred EEEEecCCCCC
Confidence 99999987653
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-20 Score=107.43 Aligned_cols=80 Identities=18% Similarity=0.156 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG--YALGNRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 107 (117)
.+++++|||+|||..+++++|+++|..||.|..+.++.+ +|||||+|.+.++|..|+..+++ ..+.|+.|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999988653 78999999999999999998865 4589999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987543
No 97
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=110.18 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=72.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--cEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG--YALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~l~ 106 (117)
..+++++|||+|||+++++++|+++|..||.|..+.++.+ +|||||+|.+.++|++|+..+++ ..+.|+.|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999998865 78999999999999999998874 689999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.|++.+..
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999987553
No 98
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-19 Score=106.29 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC-----eE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN-----RI 104 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~ 104 (117)
....++|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|+.|++.|++..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999988765 799999999999999999999999999 99
Q ss_pred EEEEEecCCCC
Q psy13319 105 LQVSFKTNKGK 115 (117)
Q Consensus 105 l~v~~a~~~~~ 115 (117)
|+|.+++++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999887543
No 99
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.5e-20 Score=106.60 Aligned_cols=83 Identities=17% Similarity=0.359 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.....++|||+|||+++++++|+++|..||. ..+.++.++ +++++|||||+|.+.++|++|+. +++..+.++.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999995 499999987 89999999999999999999996 79999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
.+....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=5.9e-20 Score=105.37 Aligned_cols=82 Identities=23% Similarity=0.474 Sum_probs=74.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC--CeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG--NRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~l~ 106 (117)
..++.++|||+|||.++++++|+++|..||.|..+.+..+ +|||||+|.+.++|++|+..|++..+. |+.|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456788999999999999999999999999999988643 679999999999999999999999999 99999
Q ss_pred EEEecCCCCC
Q psy13319 107 VSFKTNKGKT 116 (117)
Q Consensus 107 v~~a~~~~~~ 116 (117)
|.|+++++.+
T Consensus 87 V~~a~~~~~~ 96 (97)
T 1why_A 87 VDFAKSGPSS 96 (97)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999987653
No 101
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=112.14 Aligned_cols=83 Identities=16% Similarity=0.326 Sum_probs=73.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLW----QLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
..+++++|||+|||+.+++++|+ ++|+.||.|..+.+. .++.++|||||+|.+.++|..|+..|+|..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999998865 699999999988764 35788999999999999999999999999999999
Q ss_pred EEEEEecCCC
Q psy13319 105 LQVSFKTNKG 114 (117)
Q Consensus 105 l~v~~a~~~~ 114 (117)
|+|.|++.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998654
No 102
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2e-21 Score=110.02 Aligned_cols=80 Identities=35% Similarity=0.451 Sum_probs=73.5
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNK 113 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 113 (117)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.+ |..|+..++|..+.|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999998865
Q ss_pred C
Q psy13319 114 G 114 (117)
Q Consensus 114 ~ 114 (117)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.83 E-value=5e-21 Score=104.99 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=71.3
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 8999999999999875
No 104
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.83 E-value=1.9e-20 Score=107.26 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=75.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLW----QLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.+++++|||+|||.++++++|+ ++|..||.|..+.+.. ++.++|||||+|.+.++|+.|+..|+|..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999988763 46778999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q psy13319 106 QVSFKTNKGK 115 (117)
Q Consensus 106 ~v~~a~~~~~ 115 (117)
+|+++++++.
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 105
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.5e-21 Score=111.92 Aligned_cols=83 Identities=29% Similarity=0.473 Sum_probs=73.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCe----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAV----QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
..+++++|||+|||..+++++|+++|..||.| ..+.+. ++.++|||||+|.+.++|+.|+..|++..+.|+.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34567899999999999999999999999998 444443 6888999999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy13319 105 LQVSFKTNKGK 115 (117)
Q Consensus 105 l~v~~a~~~~~ 115 (117)
|+|.+++++..
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=102.17 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=70.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL-NGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 108 (117)
....++|||+|||..+++++|+++|..||.|..+.+..+ +|+|||+|.+.++|+.|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456788999999999999999999999999999988764 789999999999999999988 9999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=5.7e-20 Score=107.53 Aligned_cols=80 Identities=31% Similarity=0.538 Sum_probs=72.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.|..+.+. +|||||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34577899999999999999999999999999999886 6799999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
++++++++
T Consensus 99 ~a~~~~~r 106 (108)
T 2jvo_A 99 YSKLPAKR 106 (108)
T ss_dssp SCSCCC--
T ss_pred EecCCCCC
Confidence 99876653
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.4e-21 Score=104.47 Aligned_cols=76 Identities=26% Similarity=0.435 Sum_probs=72.3
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|++|+..++ ..+.|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999998889999999999999999999999988 8899999999986
No 109
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=105.48 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||..+++++|+++|..||.|..+ ..++.++|||||+|.+.++|+.|+..++|..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999987655 24588899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy13319 110 KTNKGKT 116 (117)
Q Consensus 110 a~~~~~~ 116 (117)
+.++++.
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9877653
No 110
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-19 Score=102.06 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||..+++++|+++|..||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 4677899999999999999999999999999999886 33999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++++.+
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987654
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.9e-21 Score=113.19 Aligned_cols=83 Identities=25% Similarity=0.365 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||+++++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|++|+. +++..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999999876566666789999999999999999999999 99999999999999
Q ss_pred EecC
Q psy13319 109 FKTN 112 (117)
Q Consensus 109 ~a~~ 112 (117)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 112
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=1.3e-19 Score=117.15 Aligned_cols=83 Identities=22% Similarity=0.446 Sum_probs=77.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+.++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|..|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 113
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=2.4e-20 Score=113.23 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=76.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGA---VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
...+.++|||+|||+++++++|+++|..||. |..+.++.++. |+++|||||+|.+.++|++|+. +++..+.|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3456789999999999999999999999999 88999999876 9999999999999999999999 99999999999
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998764
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=105.40 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=73.8
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 27 NTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 27 ~~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
....+..++|||+|||.++++++|+++|..||.|. +.++. +.++|||||+|.+.++|+.|+..|+|..+.|+.|+
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 33455678999999999999999999999999986 55554 35688999999999999999999999999999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.+++++++
T Consensus 88 V~~a~~~~~ 96 (97)
T 2e5j_A 88 VALARQQRD 96 (97)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCCC
Confidence 999998764
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-19 Score=101.96 Aligned_cols=79 Identities=32% Similarity=0.458 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCC--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPF--GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
...+.++|||+|||..+++++|+++|..| |.|..+.+. +|||||+|.+.++|+.|+..|++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34567899999999999999999999999 889888653 56999999999999999999999999999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|.+++++.+
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 116
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=7.4e-20 Score=107.92 Aligned_cols=80 Identities=20% Similarity=0.446 Sum_probs=74.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.+.+++|||+|||..+++++|+++|..||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999865 45589999999999999999999999999999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 875
No 117
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=2.9e-21 Score=111.61 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||.++++++|+++|..||.+.. .++.+..++.++|||||+|.+.++|++|+. +++..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 456789999999999999999999999998866 555666678889999999999999999999 999999999999999
Q ss_pred ecCCCCC
Q psy13319 110 KTNKGKT 116 (117)
Q Consensus 110 a~~~~~~ 116 (117)
++++..+
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=106.13 Aligned_cols=80 Identities=21% Similarity=0.478 Sum_probs=73.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||..+++++|+++|..||.|..+.++.+ +|||||+|.+.++|++|+..|+|..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999998765 78999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++++..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.8e-19 Score=105.81 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CcEeCCeEEE
Q psy13319 30 NGSGWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN--GYALGNRILQ 106 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 106 (117)
..++++|||+|||++ +++++|+++|..||.|..+.++.. +|||||+|.+.++|+.|+..|+ +..+.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 999999999999999999988643 7899999999999999999885 4568999999
Q ss_pred EEEecCCCC
Q psy13319 107 VSFKTNKGK 115 (117)
Q Consensus 107 v~~a~~~~~ 115 (117)
|++++.+.+
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999986543
No 120
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.5e-19 Score=109.00 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=78.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
||+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 121
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=4.8e-20 Score=120.65 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=76.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFG--AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..++|||+|||+++++++|+++|..|| .|..+.++.++.+++++|||||+|.+.++|++|+..|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 764
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=2.6e-19 Score=104.86 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=70.9
Q ss_pred CCCCCcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 29 MNGSGWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
.....++|||+|||.. +++++|+++|..||.|..+.+ .+|||||+|.+.++|+.|+..|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999887 3789999999999999999999999999999999
Q ss_pred EEecCCC
Q psy13319 108 SFKTNKG 114 (117)
Q Consensus 108 ~~a~~~~ 114 (117)
.+++..+
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9988533
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=3.7e-19 Score=110.21 Aligned_cols=82 Identities=29% Similarity=0.500 Sum_probs=77.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTN 112 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 112 (117)
+++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|+|||+|.+.++|..|+..++|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999999876
Q ss_pred CC
Q psy13319 113 KG 114 (117)
Q Consensus 113 ~~ 114 (117)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=101.93 Aligned_cols=80 Identities=31% Similarity=0.477 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|+|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34667889999999999999999999999999999886 3399999999999999999999999999999999
Q ss_pred EecCCCCC
Q psy13319 109 FKTNKGKT 116 (117)
Q Consensus 109 ~a~~~~~~ 116 (117)
++++..++
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 125
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=105.72 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||+++++++|+++|..| .|..+.++.++. |+++|+|||+|.+.++|++|+ .+++..++|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 4456899999999999999999999999 899999998865 999999999999999999999 5899999999999987
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 653
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1e-19 Score=105.07 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=71.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+.+++|||+|||.++++++|+++|..||.|..+.+.. .+|||||+|.+.++|..|+..|+|..+.|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4578999999999999999999999999999998863 3789999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 127
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=5e-19 Score=112.57 Aligned_cols=87 Identities=24% Similarity=0.399 Sum_probs=82.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||..+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35778999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy13319 110 KTNKGKT 116 (117)
Q Consensus 110 a~~~~~~ 116 (117)
++++.++
T Consensus 191 a~~~~~~ 197 (198)
T 2yh0_A 191 ASVGAKN 197 (198)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9987765
No 128
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=3e-19 Score=103.47 Aligned_cols=78 Identities=28% Similarity=0.471 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
..+.++|||+|||.++++++|+++|..||.|..+.++ ++||||+|.+.++|++|+..|++..+.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567889999999999999999999999999998875 45999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy13319 110 KTNKGK 115 (117)
Q Consensus 110 a~~~~~ 115 (117)
++++..
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 886543
No 129
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=2.5e-19 Score=111.28 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
++++|||+|||+++++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|+.|+..++|..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46789999999999999999999999999999999998889999999999999999999999999999999999999988
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.4e-19 Score=101.35 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=68.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.-|||+||++.+++++|+++|..||+|..+.+.. ++|||||+|.+.++|..|++.||+..+.|+.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45699999999999999999999999999998865 48999999999999999999999999999999999985
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=103.41 Aligned_cols=73 Identities=25% Similarity=0.390 Sum_probs=67.0
Q ss_pred CcEEEEeCCCCCC------CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe-EE
Q psy13319 33 GWCIFVYNLAPET------EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR-IL 105 (117)
Q Consensus 33 ~~~l~v~~Lp~~~------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~l 105 (117)
+++|||+|||..+ ++++|+++|+.||.|..+.+. +.+|.++|||||+|.+.++|++|+..|+|..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4689999999999 679999999999999999876 46789999999999999999999999999999998 87
Q ss_pred EE
Q psy13319 106 QV 107 (117)
Q Consensus 106 ~v 107 (117)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=1.1e-19 Score=106.81 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
....++|||+|||+++++++|+++|..|| .|..+.+.. +.++|||||+|.+.++|++|++.|+|..+.|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 45678999999999999999999999999 898887742 3468999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 133
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-20 Score=108.44 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGA---VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
.....++|||+|||+++++++|+++|..||. |..+.++.++. |.++|+|||+|.+.++|++|+. +++..++|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3567889999999999999999999999888 88999988876 9999999999999999999999 89999999999
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
+|.++..
T Consensus 85 ~V~~a~~ 91 (107)
T 2lmi_A 85 EVYEINN 91 (107)
T ss_dssp CCEECCH
T ss_pred EEEECCH
Confidence 9998764
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-21 Score=115.03 Aligned_cols=86 Identities=24% Similarity=0.362 Sum_probs=79.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS--------VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
..+.++|||+|||..+++++|+++|..||.|.. +.++.++.++.++|||||+|.+.++|++|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356788999999999999999999999999988 888888888999999999999999999999999999999
Q ss_pred CeEEEEEEecCCCC
Q psy13319 102 NRILQVSFKTNKGK 115 (117)
Q Consensus 102 g~~l~v~~a~~~~~ 115 (117)
|+.|+|.+++++..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999887654
No 135
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=102.84 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=70.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-cEeCCeEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGA-VQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG-YALGNRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~l~v 107 (117)
.+..++|||+|||.++++++|+++|..||. +..+.+. .+|||||+|.+.++|+.|+..|+| ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456788999999999999999999999999 5555442 378999999999999999999999 9999999999
Q ss_pred EEecCCCCC
Q psy13319 108 SFKTNKGKT 116 (117)
Q Consensus 108 ~~a~~~~~~ 116 (117)
.+++++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999876543
No 136
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=2.1e-19 Score=110.56 Aligned_cols=82 Identities=26% Similarity=0.391 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.....++|||+|||+.+++++|+++|..||.|..+.++.+ ++|||||+|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457789999999999999999999999999999998765 47899999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++++
T Consensus 144 ~a~~~~r 150 (150)
T 2i2y_A 144 LSNGEKR 150 (150)
T ss_dssp ECCCCCC
T ss_pred EcCCCCC
Confidence 9988753
No 137
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.9e-19 Score=103.07 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=70.4
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.++.++|||+|||. .+++++|+++|..||.|..+.+. +|||||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 46788999999998 99999999999999999998873 6799999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++.+.+
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9876543
No 138
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=1.1e-19 Score=105.12 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||.++++++|+++|..||.|..+.++.++ +|.++|||||+|.+.++|++|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456889999999999999999999999999999999997 89999999999999999999998 899999999999987
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
..+
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 644
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=2e-19 Score=113.54 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=78.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
....+++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|+.|+..|++..+.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999887 89999999999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 140
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-18 Score=98.63 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....+.++|||+|| ++++++|+++|..||.|..+.+. ..+|||||+|.+.++|++|+..|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34557789999996 89999999999999999999884 34789999999999999999999999999999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.++++++.
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99987654
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=105.17 Aligned_cols=77 Identities=23% Similarity=0.394 Sum_probs=71.3
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNK 113 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 113 (117)
++|||+|||.++++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|++|+..|++..+.|+.|+|.+++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999988766 5789999999999999999999999999999999999875
Q ss_pred CC
Q psy13319 114 GK 115 (117)
Q Consensus 114 ~~ 115 (117)
.+
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 142
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.80 E-value=1e-18 Score=110.99 Aligned_cols=84 Identities=24% Similarity=0.390 Sum_probs=77.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
..++.++|||+|||+++++++|+++|..||.|..+.++.++.+|.++|||||+|.+.++|+.|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 346788999999999999999999999999999999999998999999999999999999999986 8999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 97654
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.6e-19 Score=107.50 Aligned_cols=83 Identities=27% Similarity=0.426 Sum_probs=73.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQS--------VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
...++++|||+|||+.+++++|+++|..||.|.. +.+. .++.++|||||+|.+.++|.+|+..|+|..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 3567789999999999999999999999998865 3333 3588899999999999999999999999999
Q ss_pred CCeEEEEEEecCCC
Q psy13319 101 GNRILQVSFKTNKG 114 (117)
Q Consensus 101 ~g~~l~v~~a~~~~ 114 (117)
.|+.|+|.+++...
T Consensus 118 ~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 118 FGKPMVVQFARSAR 131 (143)
T ss_dssp TTEECEEEECCCSC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999997643
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=1.2e-18 Score=112.07 Aligned_cols=84 Identities=25% Similarity=0.406 Sum_probs=79.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|+|..++|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
.+..
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 145
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=9.6e-19 Score=123.68 Aligned_cols=83 Identities=18% Similarity=0.343 Sum_probs=78.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
.+.++|||+|||..+++++|.++|..||.|..|.++.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 764
No 146
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.79 E-value=1.5e-18 Score=108.20 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=77.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|+|
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578899999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ec
Q psy13319 110 KT 111 (117)
Q Consensus 110 a~ 111 (117)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=105.62 Aligned_cols=77 Identities=19% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..+++|||+|||..+++++|+++|..||.|..+.+.. .+|+|||+|.+.++|+.|+..|+|..+.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3567999999999999999999999999999988753 3679999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 753
No 148
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.79 E-value=3e-20 Score=101.77 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=70.7
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 489999999999999999999999999999999988899999999999999999999995 889999999999875
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=101.31 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSV-KVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
....++|||+|||+++++++|+++|..||.|..+ .++.++.++ .|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456889999999999999999999999999999 477665433 39999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99876
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=98.76 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=69.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||.++++++|+++|..||.|..+ +.++.++. ||||+|.+.++|++|+. +++..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 456789999999999999999999999999987 55555554 99999999999999999 9999999999999987
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
.++.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7543
No 151
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.2e-18 Score=103.74 Aligned_cols=79 Identities=14% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEEEeCC----CCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCC----H-HH---HHHHHH--HhCCcE
Q psy13319 34 WCIFVYNL----APETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN----Y-DE---AVVAIQ--SLNGYA 99 (117)
Q Consensus 34 ~~l~v~~L----p~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~----~-~~---a~~a~~--~l~~~~ 99 (117)
..|||+|| |+.+++.+|+++|+.||.|.++.+..|+.||.++|||||+|.+ . .+ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 3 22 788888 789999
Q ss_pred eCCeEEEEEEecC
Q psy13319 100 LGNRILQVSFKTN 112 (117)
Q Consensus 100 ~~g~~l~v~~a~~ 112 (117)
+.|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998664
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=2.4e-18 Score=97.00 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
..++|||+|||+++++++|+++|..| .|..+.+. .++|||||+|.+.++|++|+..++|..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 89888774 458999999999999999999999999999999999987
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 153
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=106.24 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=72.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCe----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAV----QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
++.++|||+|||+++++++|+++|..||.| ..+.++.+ .+|+++|||||+|.+.++|++|+.. ++..++++.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 567899999999999999999999999875 68888888 4799999999999999999999996 99999999999
Q ss_pred EEEecC
Q psy13319 107 VSFKTN 112 (117)
Q Consensus 107 v~~a~~ 112 (117)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 154
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=4.4e-19 Score=106.25 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQ--SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ 106 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~ 106 (117)
.....++|||+|||+++++++|+++|..| .|. .+.++.++. |+++|||||+|.+.++|++|+.. ++..++|+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 34567889999999999999999999999 576 899988876 99999999999999999999995 78899999999
Q ss_pred EEEecC
Q psy13319 107 VSFKTN 112 (117)
Q Consensus 107 v~~a~~ 112 (117)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988764
No 155
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=5.4e-18 Score=107.61 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 4568999999999999999999999999999999999988899999999999999999999986 799999999999998
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
.++.
T Consensus 181 ~~k~ 184 (196)
T 1l3k_A 181 LSKQ 184 (196)
T ss_dssp C---
T ss_pred CChh
Confidence 8654
No 156
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=97.75 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=66.0
Q ss_pred CCCcE-EEEeCCCCCCCHHH----HHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 31 GSGWC-IFVYNLAPETEESV----LWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 31 ~~~~~-l~v~~Lp~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
+++.+ |||+|||..+++++ |+++|..|| .|..+ ++ |+|||.|.+.++|++|++.|+|..+.|+.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999887 558999995 98877 33 89999999999999999999999999999
Q ss_pred EEEEEecCCCC
Q psy13319 105 LQVSFKTNKGK 115 (117)
Q Consensus 105 l~v~~a~~~~~ 115 (117)
|+|+||+.+++
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999987764
No 157
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=1e-17 Score=103.95 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=76.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN--RILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v 107 (117)
....++|||+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|+|..+.| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 4567899999999999999999999999999999999998889999999999999999999999999999977 99999
Q ss_pred EEe
Q psy13319 108 SFK 110 (117)
Q Consensus 108 ~~a 110 (117)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5.7e-18 Score=104.74 Aligned_cols=80 Identities=28% Similarity=0.454 Sum_probs=73.6
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEecCC
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNK 113 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 113 (117)
++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|+|||+|.+.++|..|+..++|..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 579999999999999999999999999999998886 4778999999999999999999999999999999999998754
Q ss_pred C
Q psy13319 114 G 114 (117)
Q Consensus 114 ~ 114 (117)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=1e-18 Score=108.42 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=76.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
..++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+. +++..+.|+.|+|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46789999999999999999999999999999999988889999999999999999999998 79999999999999998
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 160
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=1.4e-17 Score=99.96 Aligned_cols=77 Identities=26% Similarity=0.285 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEE
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGF-GFVTMTNYDEAVVAIQSLNGYALGN--RILQVSF 109 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 109 (117)
--.|||+||++.+++++|+++|+.||.|..+.+.... +|+ |||+|.+.++|+.|++.|+|..+.| ..|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3468899999999999999999999999999876542 567 9999999999999999999999987 8999999
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
++.+.
T Consensus 103 ak~~~ 107 (130)
T 3zzy_A 103 SKLTS 107 (130)
T ss_dssp CSCSS
T ss_pred cCCCc
Confidence 98653
No 161
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=1.9e-19 Score=109.56 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||+++++++|+++|..|| +..+.++.++. ++++|||||+|.+.++|++|+ .+++..+.++.|+|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 45678899999999999999999999999 67999998875 999999999999999999999 6899999999999998
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 77643
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=5.8e-18 Score=109.41 Aligned_cols=80 Identities=33% Similarity=0.504 Sum_probs=74.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
...+|||+|||..+++++|+++|..||.|..+.++.+. +.++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45689999999999999999999999999999998874 4579999999999999999999999999999999999987
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 163
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=6.8e-18 Score=108.75 Aligned_cols=77 Identities=21% Similarity=0.309 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCC-CCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 31 GSGWCIFVYNLA-PETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 31 ~~~~~l~v~~Lp-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
.++++|||+||| ..+++++|+++|..||.|..++++.+ .+|+|||+|.+.++|+.|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 79999999999999999999998754 278999999999999999999999999999999999
Q ss_pred ecC
Q psy13319 110 KTN 112 (117)
Q Consensus 110 a~~ 112 (117)
++.
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 864
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=7e-18 Score=95.41 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=62.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE--eCCeEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA--LGNRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 107 (117)
..+..+|||+|||+++++++|+++|+.||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456788999999999999999999999999999988764 58999999999999884 45544 56999999
Q ss_pred EEecCCCC
Q psy13319 108 SFKTNKGK 115 (117)
Q Consensus 108 ~~a~~~~~ 115 (117)
.++.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99987654
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=1.1e-17 Score=103.89 Aligned_cols=79 Identities=24% Similarity=0.233 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN--RILQVSF 109 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 109 (117)
...+|||+||++.+++++|+++|++||.|..+.+... ..+|+|||+|.+.++|+.|++.|+|..+.| +.|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457899999999999999999999999999988543 247899999999999999999999999965 9999999
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98753
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=1.3e-17 Score=104.06 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=74.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTN--KCKGFGFVTMTNYDEAVVAIQSLNGYALG---NRILQ 106 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 106 (117)
+.++|||+|||+++++++|+++|..||.|..+.++.++.++ .++|||||+|.+.++|++|+..+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 78999999999999999999999997765 66788
Q ss_pred EEEecCCC
Q psy13319 107 VSFKTNKG 114 (117)
Q Consensus 107 v~~a~~~~ 114 (117)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88766543
No 167
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=5.5e-18 Score=109.03 Aligned_cols=82 Identities=30% Similarity=0.426 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+.++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+..+++..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56789999999999999999999999999999999988889999999999999999999999999999999999998876
Q ss_pred CC
Q psy13319 112 NK 113 (117)
Q Consensus 112 ~~ 113 (117)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.4e-17 Score=103.04 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=75.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE--EEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI--LQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~--l~v 107 (117)
....++|||+|||..+++++|+++|..||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|+|..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345688999999999999999999999999999999999888999999999999999999999999999999865 888
Q ss_pred EEe
Q psy13319 108 SFK 110 (117)
Q Consensus 108 ~~a 110 (117)
.||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=3.2e-18 Score=101.07 Aligned_cols=75 Identities=21% Similarity=0.245 Sum_probs=65.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE-----E
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI-----L 105 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-----l 105 (117)
...++|||+|||.++++++|+++|..||.|..+.++.+ |||||+|.+.++|+.|++.|++..+.|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45688999999999999999999999999999988654 79999999999999999999999999988 7
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
+|..+.+
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7777554
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=100.22 Aligned_cols=74 Identities=18% Similarity=0.276 Sum_probs=62.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQT---NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
...++|||+|||+++++++|+++|..||.|. +.++.+..+ |.++|||||+|.+.++|++|+..++ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4568899999999999999999999999998 777777666 7889999999999999999999882 244444443
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=99.45 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCCCcEEEE--eCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe-----CC
Q psy13319 30 NGSGWCIFV--YNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL-----GN 102 (117)
Q Consensus 30 ~~~~~~l~v--~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-----~g 102 (117)
.++.++||| +||+.++++++|+++|..||.|..+.+.. .+|||||+|.+.++|++|++.|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345788999 77999999999999999999999887643 278999999999999999999999988 68
Q ss_pred eEEEEEEecCC
Q psy13319 103 RILQVSFKTNK 113 (117)
Q Consensus 103 ~~l~v~~a~~~ 113 (117)
+.|.|.|+...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 89999998753
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=2.2e-17 Score=103.22 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSF 109 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 109 (117)
....++|||+|||..+++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|+..|+|..+.|+.|+|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 4567899999999999999999999999987665 45688899999999999999999999999999999999999
Q ss_pred ecCCC
Q psy13319 110 KTNKG 114 (117)
Q Consensus 110 a~~~~ 114 (117)
+.+++
T Consensus 171 a~~k~ 175 (175)
T 1fje_B 171 TGEKG 175 (175)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98763
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=2.6e-17 Score=109.99 Aligned_cols=82 Identities=21% Similarity=0.449 Sum_probs=74.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLW----QLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
..+.++|||+|||.++++++|+ ++|..||.|..+.+.. ++.++|||||+|.+.++|++|+..++|..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4668899999999999999966 8999999999998875 57889999999999999999999999999999999
Q ss_pred EEEEecCCC
Q psy13319 106 QVSFKTNKG 114 (117)
Q Consensus 106 ~v~~a~~~~ 114 (117)
+|.|++...
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999987654
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=7e-17 Score=96.38 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=66.1
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCcEeCC--eEEEEEEec
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGF-GFVTMTNYDEAVVAIQSLNGYALGN--RILQVSFKT 111 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~ 111 (117)
.|||+||++.+++++|+++|+.||.|..+.+... .|+ |||+|.+.++|..|+..|+|..+.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999988542 265 9999999999999999999999987 589999998
Q ss_pred CCC
Q psy13319 112 NKG 114 (117)
Q Consensus 112 ~~~ 114 (117)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 654
No 175
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=1.7e-17 Score=98.78 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=70.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...++++|||+|+ ++++++|+++|..||.|..+.+. .++|||||+|.+.++|++|+..|+|..+.|+.|+|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3457889999995 69999999999999999998885 347899999999999999999999999999999999
Q ss_pred EecCCCC
Q psy13319 109 FKTNKGK 115 (117)
Q Consensus 109 ~a~~~~~ 115 (117)
+++++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987653
No 176
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=1.4e-17 Score=93.46 Aligned_cols=72 Identities=25% Similarity=0.461 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPF----G-------AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
.+.++|||+|||.++++++|+++|..| | .+..+.+..+ +|||||+|.+.++|++|+ .++|..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 8988887644 789999999999999999 899999
Q ss_pred eCCeEEEEEE
Q psy13319 100 LGNRILQVSF 109 (117)
Q Consensus 100 ~~g~~l~v~~ 109 (117)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999874
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=3.2e-17 Score=102.20 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC---CeEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG---NRILQ 106 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 106 (117)
....++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|+|||+|.+.++|.+|+..|+|..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999998885 5889999999999999999999999998765 48999
Q ss_pred EEEec
Q psy13319 107 VSFKT 111 (117)
Q Consensus 107 v~~a~ 111 (117)
|.||.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.8e-18 Score=95.07 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
...++|||+|||.++++++|+++|..||.|..+.++.+ ++|||||+|.+.++|+++... ...+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35689999999999999999999999999999988654 588999999999999764321 34568999999998
Q ss_pred cCCCC
Q psy13319 111 TNKGK 115 (117)
Q Consensus 111 ~~~~~ 115 (117)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=1.6e-17 Score=103.03 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
++++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|+.|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999988999999999999999999999994 678899999888865
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
+
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 4
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.73 E-value=7.1e-17 Score=103.11 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
..++|||+|||.++++++|+++|..||.|..+++..+. ++.++|+|||+|.+.++|+.|+..+ +..+.|+.|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999998875 4889999999999999999999865 568999999999876
Q ss_pred C
Q psy13319 112 N 112 (117)
Q Consensus 112 ~ 112 (117)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=9.4e-17 Score=107.39 Aligned_cols=84 Identities=27% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
+.+++|||+|||..+++++|.++|..||.|..+.++.++.+|.++|+|||+|.+.++|.+|+..++|..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35678999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
.+..
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 7643
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=1.4e-16 Score=92.63 Aligned_cols=82 Identities=17% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHhhcCCCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 31 GSGWCIFVYNLAP-----ETEESVLWQLFGPFGAVQSVKVIRDLQT-NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 31 ~~~~~l~v~~Lp~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
.++++|+|.|+.. +-.+++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4577899999963 2367899999999999999999987644 578999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy13319 105 LQVSFKTN 112 (117)
Q Consensus 105 l~v~~a~~ 112 (117)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=3.6e-17 Score=109.80 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=76.0
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 30 NGSGWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQ-TNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
....++|||+|||.. +++++|+++|..||.|..+.++.+.. ||.++|+|||+|.+.++|.+|+ .|+|..+.|+.|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999988765 5889999999999999999999 99999999999999
Q ss_pred EEecCC
Q psy13319 108 SFKTNK 113 (117)
Q Consensus 108 ~~a~~~ 113 (117)
.|+.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999876
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=1.4e-16 Score=106.61 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCCCC-CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPET-EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
....++|||+|||..+ ++++|+++|..||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..|+|..++|+.|+|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567889999999995 999999999999999999998885 68899999999999999999999999999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
|+.++.
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 998764
No 185
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=3.3e-17 Score=107.53 Aligned_cols=79 Identities=18% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 30 NGSGWCIFVYNLAPET---------EESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
....++|||+||+..+ ++++|+++|..||.|..+.++.+ +|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578899999999998 69999999999999999998754 78999999999999999999999998
Q ss_pred ------------CCeEEEEEEecCCC
Q psy13319 101 ------------GNRILQVSFKTNKG 114 (117)
Q Consensus 101 ------------~g~~l~v~~a~~~~ 114 (117)
.|+.|.|.||+..+
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=4.4e-17 Score=106.28 Aligned_cols=79 Identities=28% Similarity=0.488 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 30 NGSGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
.+++++|||+|||. .+++++|+++|..||.|..+.++.++ +|||||+|.+.++|++|++.++|..+.|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 46788999999999 99999999999999999999998764 7899999999999999999999999999999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98754
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=2.6e-16 Score=105.19 Aligned_cols=77 Identities=29% Similarity=0.467 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 108 (117)
..++++|||+|||..+++++|+++|..||.|..+.++.++ +|+|||+|.+.++|.+|+..|+|..+. |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4467899999999999999999999999999999988553 589999999999999999999999999 9999999
Q ss_pred Eec
Q psy13319 109 FKT 111 (117)
Q Consensus 109 ~a~ 111 (117)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=2.9e-16 Score=104.25 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=72.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 28 TMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
......++|||+|||+++++++|.++|..||.|..+.+..+ +|||||+|.+.++|..|+..++|..+.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 33466789999999999999999999999999999988543 789999999999999999999999999999999
Q ss_pred EEecCC
Q psy13319 108 SFKTNK 113 (117)
Q Consensus 108 ~~a~~~ 113 (117)
.++.+.
T Consensus 91 ~~a~~~ 96 (261)
T 3sde_A 91 RFATHG 96 (261)
T ss_dssp EECCCS
T ss_pred eecccC
Confidence 998753
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-15 Score=89.55 Aligned_cols=82 Identities=18% Similarity=0.218 Sum_probs=69.6
Q ss_pred CCCCCcEEEEeCCCCCCC-----------HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 29 MNGSGWCIFVYNLAPETE-----------ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
...++++|+|.||..... +++|+++|.+||.|..+.+ .++ .++|+|||+|.+.++|++|+..|+|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345688999999955432 5799999999999999955 443 3689999999999999999999999
Q ss_pred cEeCCeEEEEEEecCCC
Q psy13319 98 YALGNRILQVSFKTNKG 114 (117)
Q Consensus 98 ~~~~g~~l~v~~a~~~~ 114 (117)
..+.|+.|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999987643
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.2e-17 Score=103.27 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEE
Q psy13319 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVS 108 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 108 (117)
...+.++|||+|||.++++++|+++|..||.+.. ..+.+..++.++|||||+|.+.++|.+|++ ++|..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3567889999999999999999999999987654 223334567889999999999999999995 99999999999999
Q ss_pred EecCCC
Q psy13319 109 FKTNKG 114 (117)
Q Consensus 109 ~a~~~~ 114 (117)
++....
T Consensus 87 ~~~~~~ 92 (175)
T 1fje_B 87 KPKGRD 92 (175)
T ss_dssp CCCCSS
T ss_pred cCCCcc
Confidence 987643
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=101.62 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
++++|||+|||+ .+++++|+++|..||.|..+.++.++ +|||||+|.+.++|..|+..++|..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 367899999999 99999999999999999999887663 689999999999999999999999999999999998
Q ss_pred cCC
Q psy13319 111 TNK 113 (117)
Q Consensus 111 ~~~ 113 (117)
+..
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=6.7e-16 Score=103.59 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=70.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFK 110 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 110 (117)
..++|||+|||..+++++|.++|..|| .|..+.++.++. +.++|||||+|.+.++|..|+..++|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999988765 778999999999999999999999999999999999998
Q ss_pred cCCC
Q psy13319 111 TNKG 114 (117)
Q Consensus 111 ~~~~ 114 (117)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 7654
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=9.3e-16 Score=100.00 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQVS 108 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 108 (117)
+++++|||+|||..+++++|+++|..|| .|..+.+... .+|+|||+|.+.++|.+|+..|+|..+. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999988543 2679999999999999999999999999 9999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
|++++
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98864
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=98.13 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=71.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC-CeEEEEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFG-AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG-NRILQVS 108 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~ 108 (117)
+++++|||+|||..+++++|+++|..|| .|..+.++.+. +|+|||+|.+.++|.+|+..|+|..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4688999999999999999999999999 99999886532 689999999999999999999999999 9999999
Q ss_pred EecCC
Q psy13319 109 FKTNK 113 (117)
Q Consensus 109 ~a~~~ 113 (117)
|++++
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98764
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.63 E-value=3e-15 Score=99.31 Aligned_cols=81 Identities=28% Similarity=0.347 Sum_probs=72.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CcEeC---CeEEEE
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN-GYALG---NRILQV 107 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~---g~~l~v 107 (117)
++.+|||+|||..+++++|+++|..||.|..+.++.+ .+|.++|+|||+|.+.++|.+|+..++ +..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999988 579999999999999999999999994 45554 899999
Q ss_pred EEecCC
Q psy13319 108 SFKTNK 113 (117)
Q Consensus 108 ~~a~~~ 113 (117)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 987653
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=2.2e-15 Score=93.75 Aligned_cols=75 Identities=21% Similarity=0.375 Sum_probs=66.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPF----G-------AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
+.++|||+|||+++++++|+++|..| | .+..+.+.. .+|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 666665543 3789999999999999999 7999999
Q ss_pred CCeEEEEEEecCC
Q psy13319 101 GNRILQVSFKTNK 113 (117)
Q Consensus 101 ~g~~l~v~~a~~~ 113 (117)
.|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987754
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.1e-15 Score=98.40 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=68.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCe--EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCe----E
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAV--QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNR----I 104 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~----~ 104 (117)
+++++|||+|||+.+++++|+++|+.||.| ..+++..+. +..+|+|||+|.+.++|..|+..|||..+.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999998 888887664 55579999999999999999999999999876 4
Q ss_pred EEEEEe
Q psy13319 105 LQVSFK 110 (117)
Q Consensus 105 l~v~~a 110 (117)
+.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666554
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=6.7e-15 Score=85.49 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCcEEEEeCC--CCCCC--------HHHHHHhhcCCCCeEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 32 SGWCIFVYNL--APETE--------ESVLWQLFGPFGAVQSVKVIRDLQT--NKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 32 ~~~~l~v~~L--p~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
+++.|.+.|+ |.... +++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5677889988 33333 2689999999999999999887654 3578999999999999999999999999
Q ss_pred eCCeEEEEEEecC
Q psy13319 100 LGNRILQVSFKTN 112 (117)
Q Consensus 100 ~~g~~l~v~~a~~ 112 (117)
+.|+.|++.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999763
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=3.9e-15 Score=94.48 Aligned_cols=75 Identities=21% Similarity=0.388 Sum_probs=65.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCC----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPF----G-------AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
..++|||+|||+++++++|+++|..| | .+..+.+ +..+|||||+|.+.++|++|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555544 344889999999999999999 7999999
Q ss_pred CCeEEEEEEecCC
Q psy13319 101 GNRILQVSFKTNK 113 (117)
Q Consensus 101 ~g~~l~v~~a~~~ 113 (117)
.|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999997653
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=1.6e-14 Score=85.46 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCC--C---CHHHHHHhhcCCCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC
Q psy13319 32 SGWCIFVYNLAPE--T---EESVLWQLFGPFGAVQSVKVIRDLQ----TNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN 102 (117)
Q Consensus 32 ~~~~l~v~~Lp~~--~---~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 102 (117)
++++|++.|+-.. + -+++|++.|.+||.|..+.+..++. ++..+|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5678999998422 2 2589999999999999999988754 35678999999999999999999999999999
Q ss_pred eEEEEEEec
Q psy13319 103 RILQVSFKT 111 (117)
Q Consensus 103 ~~l~v~~a~ 111 (117)
+.|++.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=7.8e-16 Score=89.31 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=62.5
Q ss_pred EeCCCCCCCHHHHHHhh------------cCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 38 VYNLAPETEESVLWQLF------------GPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 38 v~~Lp~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
+.|||..+++++|.+.| ++||.|..+.++.+.. +.++|++||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777777666665 9999999999988754 7889999999999999999999999999999999
Q ss_pred EEEEe
Q psy13319 106 QVSFK 110 (117)
Q Consensus 106 ~v~~a 110 (117)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.8e-13 Score=78.73 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=62.0
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 33 GWCIFVYNLA-------PETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 33 ~~~l~v~~Lp-------~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
..++-|.-.. ..+++++|+++|..||.|..+.++ +.++|||||+|.+.++|+.|+..+++ +.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4455555433 457899999999999999999887 35689999999999999999997544 679999
Q ss_pred EEEEecCCCC
Q psy13319 106 QVSFKTNKGK 115 (117)
Q Consensus 106 ~v~~a~~~~~ 115 (117)
+|.|++.++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999886553
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.49 E-value=1.1e-13 Score=95.05 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=63.9
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC---Ce-
Q psy13319 30 NGSGWCIFVYN--LAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG---NR- 103 (117)
Q Consensus 30 ~~~~~~l~v~~--Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~- 103 (117)
..++.+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678899999 578899999999999999998876642 3789999999999999999999998773 45
Q ss_pred -EEEEEEec
Q psy13319 104 -ILQVSFKT 111 (117)
Q Consensus 104 -~l~v~~a~ 111 (117)
.|.++|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56667753
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=1.3e-12 Score=76.84 Aligned_cols=76 Identities=14% Similarity=0.278 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCCC----------HHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeC
Q psy13319 32 SGWCIFVYNLAPETE----------ESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALG 101 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 101 (117)
+++.|.+.|+=..-. +++|++.|++||.|..+.+..+. .+|++||+|.+.++|.+|+..|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456788887733222 25889999999999999886542 4899999999999999999999999999
Q ss_pred CeEEEEEEec
Q psy13319 102 NRILQVSFKT 111 (117)
Q Consensus 102 g~~l~v~~a~ 111 (117)
|+.|++.|+.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999975
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-12 Score=70.45 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=66.3
Q ss_pred CCCCCcEEEEeCCCC----CCCH----HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEe
Q psy13319 29 MNGSGWCIFVYNLAP----ETEE----SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYAL 100 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~----~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 100 (117)
..+++.+|+|.-.+. .+.. .+|.+.|..||.+..+++..++ +||+|.+.+.|.+|+. |+|..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 346777888887762 3333 5788999999999999998762 8999999999999999 999999
Q ss_pred CCeEEEEEEecCCCCC
Q psy13319 101 GNRILQVSFKTNKGKT 116 (117)
Q Consensus 101 ~g~~l~v~~a~~~~~~ 116 (117)
.|+.|+|+++++.+-.
T Consensus 74 ~Gr~LkV~lkt~dW~~ 89 (91)
T 2dnr_A 74 LNRTITIALKSPSGPS 89 (91)
T ss_dssp TTEEEEEEECCCSSCS
T ss_pred CCeEEEEEeCCCCccc
Confidence 9999999999987654
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.4e-11 Score=72.91 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEeCCCCC-CCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CcEeCCe
Q psy13319 28 TMNGSGWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN-YDEAVVAIQSLN--GYALGNR 103 (117)
Q Consensus 28 ~~~~~~~~l~v~~Lp~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~~~g~ 103 (117)
..-+.++.|||+||+.. +++++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..++..++ +..+.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34578899999999999 99999999999999999999977743 59999999 899999999985 5778888
Q ss_pred EEEEEE
Q psy13319 104 ILQVSF 109 (117)
Q Consensus 104 ~l~v~~ 109 (117)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 777765
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=2.1e-10 Score=74.23 Aligned_cols=66 Identities=27% Similarity=0.251 Sum_probs=58.9
Q ss_pred CHHHHHHhhcCCCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 46 EESVLWQLFGPFGAVQSVKVIRDLQ----TNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 46 ~~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
.++++.+.|.+||.|..+.+..+.. ++.++|++||+|.+.++|.+|+..|+|..+.|+.|++.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999875543 34889999999999999999999999999999999999865
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.6e-10 Score=63.60 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=62.6
Q ss_pred CCCCCcEEEEeCCCCC------CCH---HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Q psy13319 29 MNGSGWCIFVYNLAPE------TEE---SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99 (117)
Q Consensus 29 ~~~~~~~l~v~~Lp~~------~~~---~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 99 (117)
..+++.+|+|.-++.. ..+ .+|.+.|..||.+..+++..++ +||+|.+.+.|.+|+. |+|..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4577888999888743 222 4688999999999999998772 9999999999999999 99999
Q ss_pred eCCeEEEEEEec
Q psy13319 100 LGNRILQVSFKT 111 (117)
Q Consensus 100 ~~g~~l~v~~a~ 111 (117)
+.|+.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=7.9e-08 Score=55.34 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCC-----CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPF-----GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRI 104 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 104 (117)
.+..+++-+-+||..++...|+.++.++ |.+..+.+..+ .+.|+|+|.+...|-+|.-.|+|..+.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3557889999999999999999999999 99999988776 448999999999999988889999999999
Q ss_pred EEEE
Q psy13319 105 LQVS 108 (117)
Q Consensus 105 l~v~ 108 (117)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9986
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=2.9e-05 Score=43.77 Aligned_cols=57 Identities=25% Similarity=0.416 Sum_probs=48.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 95 (117)
....+.+++ ++|+.+...||.++|+.||. ..|+++.+. .|||.|.+++.|..++..+
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 345566777 99999999999999999994 457787763 6999999999999998865
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.00 E-value=0.00021 Score=39.91 Aligned_cols=79 Identities=11% Similarity=0.199 Sum_probs=61.1
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCcEeCC---e--EEE
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNK--CKGFGFVTMTNYDEAVVAIQSLNGYALGN---R--ILQ 106 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~g---~--~l~ 106 (117)
.+|-|++||+..+++++.+.++....+.-..++..+.+.+ ..+-||+.|.+.++...-...++|..+.+ . +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 3688999999999999999999988776666665543332 25789999999999999999999987642 2 345
Q ss_pred EEEecC
Q psy13319 107 VSFKTN 112 (117)
Q Consensus 107 v~~a~~ 112 (117)
|++|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 666543
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.89 E-value=3.9e-05 Score=43.36 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=46.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN 96 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 96 (117)
.+.+++ ++|+.+...||.++|+.|| -..|+|+.+. .|||.|.+++.|..++..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 355667 9999999999999999999 5567888763 69999999999999999763
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=5.1e-05 Score=43.31 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=60.4
Q ss_pred CcEEEEeCCCCCCCH-----HHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEE
Q psy13319 33 GWCIFVYNLAPETEE-----SVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQV 107 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v 107 (117)
..+|+|.||+.++-. ..++++|..|+......+...- .-..|.|.+.++|.+|-..|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 456999999887522 4778999999988776665442 24789999999999999999999999999999
Q ss_pred EEecC
Q psy13319 108 SFKTN 112 (117)
Q Consensus 108 ~~a~~ 112 (117)
-|+.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98763
No 214
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.0014 Score=37.33 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=54.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcC----C-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEE
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGP----F-GAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRIL 105 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~----~-g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l 105 (117)
..+.+|.|.|||..+.++.|+-.|.+ . |.+..+.... +-|+|+|.+...+++.++. ....+.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 45678999999999999999999987 2 4566664432 3699999999999999884 3567778887
Q ss_pred EEEE
Q psy13319 106 QVSF 109 (117)
Q Consensus 106 ~v~~ 109 (117)
.|.-
T Consensus 77 sV~P 80 (104)
T 2dhx_A 77 SLRP 80 (104)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7754
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=0.00058 Score=39.92 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCC-eEEEEE
Q psy13319 30 NGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGN-RILQVS 108 (117)
Q Consensus 30 ~~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~ 108 (117)
....+-|.|-+.|... ...+.+.|..||.|.+.... ....+-+|.|.++.+|++|+.. ||..+.+ -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEE
Confidence 3456778899999984 67788999999999876551 1234899999999999999995 9999874 556665
Q ss_pred Ee
Q psy13319 109 FK 110 (117)
Q Consensus 109 ~a 110 (117)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.41 E-value=0.001 Score=37.45 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=56.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCcEeCC-----eEE
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNK--CKGFGFVTMTNYDEAVVAIQSLNGYALGN-----RIL 105 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~l 105 (117)
+-+|-|+.||+..+|+++.+.+..+-.+....++....+.+ ..+-|||.|.+.++...-...++|..+-+ .+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 34588999999999999999998865543333322222211 24579999999999999999999987642 245
Q ss_pred EEEEecC
Q psy13319 106 QVSFKTN 112 (117)
Q Consensus 106 ~v~~a~~ 112 (117)
.|++|--
T Consensus 89 ~VE~APy 95 (97)
T 2l08_A 89 VVEFAPF 95 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 5666643
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.80 E-value=0.0017 Score=38.49 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=53.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHhhcCCCCeEE-EEEEe------------cCCCC-CcceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQS-VKVIR------------DLQTN-KCKGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 33 ~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~-~~~~~------------~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
..-|.|-+.|+.. ...+.+.|++||.|.+ ..... .+..+ ....+..|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3457788997775 4568889999999855 11100 00001 135688999999999999999 4999
Q ss_pred EeCCeEEEEEEec
Q psy13319 99 ALGNRILQVSFKT 111 (117)
Q Consensus 99 ~~~g~~l~v~~a~ 111 (117)
.+.|..|-|...+
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999888877654
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.05 E-value=0.0093 Score=35.95 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=27.1
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q psy13319 62 SVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNG 97 (117)
Q Consensus 62 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 97 (117)
++++.++. +..+||+||+|.+.++|++|+..+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 34566664 35799999999999999999987764
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.50 E-value=0.0099 Score=42.48 Aligned_cols=56 Identities=7% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 93 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 93 (117)
..+.|+|. .|...++.+|.+.|+.||.|..+.+-.+. .-|+.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 34789997 79999999999999999999887654432 3599999999988887654
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.96 E-value=0.0075 Score=36.14 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=35.2
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCcEeCCeEEEEEEecC
Q psy13319 72 NKCKGFGFVTMTNYDEAVVAIQSL-NGYALGNRILQVSFKTN 112 (117)
Q Consensus 72 ~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~ 112 (117)
+..+|+++++|.+.+.|++|+..+ +|..+.| .+.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 455899999999999999999999 9999999 888887654
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.17 E-value=0.25 Score=35.73 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=45.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q psy13319 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLN 96 (117)
Q Consensus 32 ~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 96 (117)
....++|+ +|..+...+|.+.|+.||. ..++++.+ ..+||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 34566665 9999999999999999995 45666544 269999999999999999874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.29 E-value=22 Score=18.10 Aligned_cols=58 Identities=7% Similarity=0.150 Sum_probs=35.3
Q ss_pred CCHHHHHHhhcCCC-----CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEeCCeEEEEEEec
Q psy13319 45 TEESVLWQLFGPFG-----AVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKT 111 (117)
Q Consensus 45 ~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 111 (117)
+...+|..++..-+ .|-.+.+..+ +.||+.... .+..++..+++..+.|+.++++.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 45566776666543 3445555322 788888763 4667778889988999998887654
No 223
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=38.01 E-value=32 Score=18.58 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 74 CKGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 74 ~~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
..||.||++....+...+++...|+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999998888888877775
No 224
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=43.23 E-value=7.2 Score=21.99 Aligned_cols=64 Identities=11% Similarity=-0.017 Sum_probs=37.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEecCCCCCc-ceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 31 GSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKC-KGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 31 ~~~~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
+.+.+|.+.... +++++..+....+ +..+.+.....+|+. .-.-+-.|.+.++|..|+..|...
T Consensus 23 ~~~YTLQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 23 SSHYTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 445666665543 3455666666554 233433333223433 234556789999999999988653
No 225
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=35.15 E-value=74 Score=23.71 Aligned_cols=56 Identities=9% Similarity=0.253 Sum_probs=38.8
Q ss_pred eCCCCCCCHHHHHHhhc----CCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q psy13319 39 YNLAPETEESVLWQLFG----PFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95 (117)
Q Consensus 39 ~~Lp~~~~~~~l~~~f~----~~g~i~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 95 (117)
+..+++.+-.||..+|. .+|-|+++.+...+. ...+.+.++.|.+.+++..++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34555555567777775 467788887765543 334567889999999988887755
No 226
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=29.07 E-value=33 Score=13.57 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=8.9
Q ss_pred HHHHHHhhcCCC
Q psy13319 47 ESVLWQLFGPFG 58 (117)
Q Consensus 47 ~~~l~~~f~~~g 58 (117)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 357788888876
No 227
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.48 E-value=32 Score=22.60 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=25.0
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEEEe
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIR 67 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~~~ 67 (117)
....|+|||+.++..-|.+++.....+....++.
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4578999999999998988887654455444443
No 228
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.84 E-value=69 Score=20.93 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=23.4
Q ss_pred cEEEEeCCCCCCCHHHHHHhhcCCCCeEEEEE
Q psy13319 34 WCIFVYNLAPETEESVLWQLFGPFGAVQSVKV 65 (117)
Q Consensus 34 ~~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~~~ 65 (117)
..+.|+|+|+.++..-+.+++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 45789999999999988888876 54444433
No 229
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=23.84 E-value=55 Score=18.30 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.1
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 74 CKGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 74 ~~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
-+||-||+=....+...|+..+.+.
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 4899999999999999998766554
No 230
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.83 E-value=78 Score=18.57 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=21.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCc
Q psy13319 74 CKGFGFVTMTNYDEAVVAIQSLNGY 98 (117)
Q Consensus 74 ~~g~~fv~f~~~~~a~~a~~~l~~~ 98 (117)
..||.||++....+...+++...|+
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5889999999988888888877775
No 231
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=22.49 E-value=1.1e+02 Score=19.56 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=21.2
Q ss_pred EEEEeCCCCCCCHHHHHHhhcCCCCeEEE
Q psy13319 35 CIFVYNLAPETEESVLWQLFGPFGAVQSV 63 (117)
Q Consensus 35 ~l~v~~Lp~~~~~~~l~~~f~~~g~i~~~ 63 (117)
.+.|+|+|+.++...+.+++.....+...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 57899999999988887777654334333
Done!