RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13319
(117 letters)
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 72.6 bits (178), Expect = 6e-19
Identities = 18/74 (24%), Positives = 43/74 (58%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V +L P+ E++L++ F P G + S++V RD+ T + G+ +V +A A+ ++
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 96 NGYALGNRILQVSF 109
N + + +++ +
Sbjct: 63 NFDVIKGKPVRIMW 76
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 70.7 bits (173), Expect = 5e-18
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDL-QTNKCKGFGFVTMTNYDEAVVAIQS 94
I V N+ + + + +LF FG +++V++ + + T +GFGFV +A A +
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 95 L-NGYALGNRILQVSFKTNKGKT 116
L + L R L + + ++
Sbjct: 71 LCHSTHLYGRRLVLEWADSEVTV 93
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 70.4 bits (172), Expect = 1e-17
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
+++ NL + ++ +FG +G ++ IR T + +G +V + +A A
Sbjct: 9 ILYIRNLPYKITAEEMYDIFGKYG---PIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 95 LNGYALGNRILQVSFKTNK 113
L+G+ + NR L V +
Sbjct: 66 LSGFNVCNRYLVVLYYNAN 84
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 67.6 bits (165), Expect = 1e-16
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 35 CIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 93
+F+ NL ++S + +F +G + V KGF FV N A A+
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVA 68
Query: 94 SLNGYALGNRILQVSFKTNK 113
+G + ++L ++
Sbjct: 69 GEDGRMIAGQVLDINLAAEP 88
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 67.0 bits (163), Expect = 1e-16
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L + + +L FG +++ +++D T KG+ F + + AI L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
NG LG++ L V + K +
Sbjct: 64 NGMQLGDKKLLVQRASVGAKNA 85
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 67.3 bits (164), Expect = 1e-16
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V NL+ T E +++LF G ++ + + D GF FV + +A A++ +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 96 NGYALGNRILQVSF 109
NG L +RI++ +
Sbjct: 70 NGTRLDDRIIRTDW 83
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 66.6 bits (162), Expect = 2e-16
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVI---RDLQTNKCKGFGFVTMTNYDEAVVAI 92
+F+ NL T E L +F GA++S + GFGFV ++A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 93 QSLNGYALGNRILQVSFKTNKGKTS 117
+ L G+ + L+V K +
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKPA 85
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 64.6 bits (157), Expect = 9e-16
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V NL ++ + +LF FG ++ V D ++ + G V +A+ A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQY 61
Query: 96 NGYALGNRILQVSFKT 111
NG L R + + T
Sbjct: 62 NGVPLDGRPMNIQLVT 77
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 64.6 bits (157), Expect = 1e-15
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V NL + L +FG +G++ ++RD T + +G FV +EA AI +L
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 96 NGYAL--GNRILQVSF 109
N G++ L V
Sbjct: 69 NNVIPEGGSQPLSVRL 84
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 64.3 bits (156), Expect = 2e-15
Identities = 25/81 (30%), Positives = 43/81 (53%)
Query: 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEA 88
M + ++V LA E ++ VL F PFG + +++ D +T K +GF FV ++A
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 89 VVAIQSLNGYALGNRILQVSF 109
AI ++N L R ++V+
Sbjct: 61 AAAIDNMNESELFGRTIRVNL 81
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 64.0 bits (155), Expect = 2e-15
Identities = 22/82 (26%), Positives = 45/82 (54%)
Query: 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAI 92
GW +FV ++ E +E + + F +G ++++ + D +T KG+ V + +A+ A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 93 QSLNGYALGNRILQVSFKTNKG 114
++LNG + + +QV + KG
Sbjct: 67 EALNGAEIMGQTIQVDWCFVKG 88
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 64.2 bits (156), Expect = 2e-15
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++ +A + ++ Q F PFG + ++V KG+ FV + ++ A AI S+
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP------EKGYSFVRFSTHESAAHAIVSV 74
Query: 96 NGYALGNRILQVSFKTNK 113
NG + +++ +
Sbjct: 75 NGTTIEGHVVKCYWGKES 92
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 63.9 bits (155), Expect = 2e-15
Identities = 21/80 (26%), Positives = 43/80 (53%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V L + E +LW+LF G V + + +D T + +G+GFV + ++A AI+ +
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 96 NGYALGNRILQVSFKTNKGK 115
+ L + ++V+ + K
Sbjct: 72 DMIKLYGKPIRVNKASAHNK 91
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 63.6 bits (154), Expect = 2e-15
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAV-QSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
IF+ NL PE +E +L+ F FG + Q+ K++RD T KG+ F+ ++D + AI++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 95 LNGYALGNRILQVSF---KTNKG 114
+NG L NR + VS+ K +KG
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSKG 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 62.0 bits (150), Expect = 9e-15
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
C+ V+ L+ T E L ++F +G + V ++ D Q+ + +GF FV N D+A A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 95 LNGYALGNRILQV 107
NG L R ++V
Sbjct: 71 ANGMELDGRRIRV 83
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 62.0 bits (150), Expect = 1e-14
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V NL T E ++ + F +V K + + FV +N ++AV A+++L
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKAL 64
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
NG L ++V+ K S
Sbjct: 65 NGKVLDGSPIEVTLAKPVDKDS 86
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 62.0 bits (150), Expect = 1e-14
Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L+ ET E L + +G + V+RD + + +GFGFVT ++ E A+
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 96 NGYALGNRILQVSFKTNK 113
+++ R+++ +
Sbjct: 82 RPHSIDGRVVEPKRAVAR 99
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 61.6 bits (149), Expect = 2e-14
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 25 PANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN 84
P+ +G G IF+ NL + L+ F FG + S KV+ D +K +GFV
Sbjct: 1 PSLRKSGVGN-IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFET 57
Query: 85 YDEAVVAIQSLNGYALGNRILQVSFKTNK 113
+ A AI+ +NG L +R + V ++
Sbjct: 58 QEAAERAIEKMNGMLLNDRKVFVGRFKSR 86
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 61.2 bits (148), Expect = 2e-14
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V L + + L+ LF G + + +++RD +T G+ FV T+ ++ AI+ L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 96 NGYALGNRILQVSF 109
NG + N+ L+VS+
Sbjct: 65 NGITVRNKRLKVSY 78
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.6 bits (149), Expect = 2e-14
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ + E E V ++ +G V+ + V + + G +V ++A A+ L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDN-LGDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 96 NGYALGNRILQVSF 109
N + +
Sbjct: 89 NNRWFNGQPIHAEL 102
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.1 bits (148), Expect = 2e-14
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V L +T E L + F FG V V+V +DL+T KGFGFV T Y+ V +
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
Query: 96 NGYALGNRILQVSFKTNK 113
+ + R +K
Sbjct: 71 HM--IDGRWCDCKLPNSK 86
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 61.2 bits (148), Expect = 3e-14
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ NL+ E L ++F ++ V K KG ++ + +A ++
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLVSQ-----DGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
G + R + + + KG T
Sbjct: 74 QGAEIDGRSVSLYYTGEKGGTR 95
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 60.9 bits (147), Expect = 4e-14
Identities = 37/81 (45%), Positives = 49/81 (60%)
Query: 33 GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAI 92
G +F+Y+L E + L Q+F PFG V S KV D QTN K FGFV+ N A AI
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 93 QSLNGYALGNRILQVSFKTNK 113
QS+NG+ +G + L+V K +K
Sbjct: 78 QSMNGFQIGMKRLKVQLKRSK 98
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 60.4 bits (146), Expect = 4e-14
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
I V NL+ +T E+ L +LF PFG++ + + +D T + KGF F++ ++A AI +
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 70
Query: 96 NGYALGNRILQVSF---KTN 112
+G+ + IL V + TN
Sbjct: 71 SGFGYDHLILNVEWAKPSTN 90
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 60.4 bits (146), Expect = 6e-14
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F LA L F G V+ V++I D + + KG +V L
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV-PLAIGL 79
Query: 96 NGYALGNRILQVSFKTNK 113
G L + V +
Sbjct: 80 TGQRLLGVPIIVQASQAE 97
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 60.1 bits (145), Expect = 7e-14
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V NL+ + E ++ QLF G +S K+I + + FV + +A A+ ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 96 NGYALGNRILQVSFKTNKGK 115
NG + + ++V++ T
Sbjct: 69 NGRKILGKEVKVNWATTPSS 88
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 59.8 bits (144), Expect = 1e-13
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVI--------RDLQTNKCKGFGFVTMTNYD 86
I+V L L F G V+ K D +T K KG V+ +
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 87 EAVVAIQSLNGYALGNRILQVSFKTNKGKTS 117
A A++ +G L+VS K +
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLARKKPPMN 100
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.4 bits (143), Expect = 1e-13
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKV-----IRDLQTNKCKGFGFVTMTNYDEAVV 90
++V N+ E + F + + + +Q N+ K F F+ + DE
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 91 AIQSLNGYALGNRILQVS 108
A+ +G + L++
Sbjct: 64 AMA-FDGIIFQGQSLKIR 80
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.3 bits (143), Expect = 1e-13
Identities = 14/78 (17%), Positives = 28/78 (35%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
I V N+ + F + + ++ + G V + DEA A
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 92 IQSLNGYALGNRILQVSF 109
+ LN +G+R +++
Sbjct: 68 VIDLNDRPIGSRKVKLVL 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 58.6 bits (141), Expect = 2e-13
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V L + LFG G ++S K++RD T + G+GFV + +A AI +L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 96 NGYALGNRILQVSF 109
NG L + ++VS+
Sbjct: 65 NGLRLQTKTIKVSY 78
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 58.9 bits (142), Expect = 2e-13
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V N+ + L Q+FG FG + V++I + + +K FGFVT N +A A + L
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSADADRAREKL 71
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
+G + R ++V+ T + T+
Sbjct: 72 HGTVVEGRKIEVNNATARVMTN 93
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 58.1 bits (140), Expect = 3e-13
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L+ +T + L + FG FG V+ V+RD T + +GFGFVT + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-Q 61
Query: 96 NGYALGNRILQVSF 109
+ + L ++ +
Sbjct: 62 SRHELDSKTIDPKV 75
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 58.1 bits (140), Expect = 4e-13
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+FV NL P+ E + +LF +G V +K KGFGF+ + A +A L
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKVEL 64
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
+ L + L+V F + +
Sbjct: 65 DNMPLRGKQLRVRFACHSASLT 86
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 57.7 bits (139), Expect = 4e-13
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L+ +T + L F FG V + D T + +GFGFV + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 96 NGYALGNRILQV 107
+ L +++
Sbjct: 61 KEHKLNGKVIDP 72
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 58.3 bits (140), Expect = 5e-13
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ NL+P E L LF F + + + T + +G F+T N + A A+ +
Sbjct: 21 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 80
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
NGY L +IL + F NK + S
Sbjct: 81 NGYKLYGKILVIEFGKNKKQRS 102
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 57.8 bits (139), Expect = 6e-13
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+FV NL+ + E L +LF +G + + D T K KGF FVT + AV A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
+G R+L V T K + S
Sbjct: 71 DGQVFQGRMLHVLPSTIKKEAS 92
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 57.4 bits (138), Expect = 6e-13
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
++V L + L QLF +G + + +++ D T +G GF+ EA AI+ L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 96 NGYALG--NRILQVSF 109
NG + V F
Sbjct: 69 NGQKPSGATEPITVKF 84
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 58.0 bits (140), Expect = 6e-13
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 40 NLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSLNGYA 99
+ E E L FG ++ + + G V+ + +EA IQ+L+G
Sbjct: 27 LVLNEIRED-LRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRW 81
Query: 100 LGNRILQVSFKTNKGKT 116
G R + G T
Sbjct: 82 FGGRQITAQAW--DGTT 96
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.4 bits (138), Expect = 8e-13
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
I+V NL P+ + +F +GA++ + + F FV + +A A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 96 NGYALGNRILQVSFKTNKGKT 116
+GY L+V F + T
Sbjct: 74 DGYDYDGYRLRVEFPRSGRGT 94
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 56.5 bits (136), Expect = 1e-12
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
IFV L+P+T E + + FG FG V+S+++ D +TNK +GF F+T + ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K 60
Query: 96 NGYALGNRILQV 107
+ +G ++
Sbjct: 61 KYHNVGLSKCEI 72
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 57.3 bits (138), Expect = 1e-12
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
I V NL VL Q+F FG V + + + + A A S
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLS 64
Query: 95 LNGYAL--GNRILQVSFKTNK 113
L+G + L++ F
Sbjct: 65 LDGQNIYNACCTLRIDFSKLT 85
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.7 bits (136), Expect = 2e-12
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+FV L+ +T E L Q+F +G + V V++D +T + +GFGFVT N D+A A+ ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 96 NGYALGNRILQVSFKTNK 113
NG ++ R ++V
Sbjct: 68 NGKSVDGRQIRVDQAGKS 85
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 55.8 bits (134), Expect = 2e-12
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ NL+P L QLFG + Q G+ FV + + A+ AI++L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 96 NG-YALGNRILQVSFKTNKGKTS 117
+G L +I++V + +K S
Sbjct: 58 SGKVELHGKIMEVDYSVSKKLRS 80
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 55.8 bits (134), Expect = 2e-12
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L+ ET + L F +G + V+RD T + +GFGFVT +E A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-A 67
Query: 96 NGYALGNRILQV 107
+ + R+++
Sbjct: 68 RPHKVDGRVVEP 79
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 55.4 bits (133), Expect = 5e-12
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGP-FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
I++ NL + ++ L + F + I ++ K +G FV A A++S
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 95 LNGYALGNRILQVSFKTNKGK 115
+ G+ ++ +++ +
Sbjct: 66 MQGFPFYDKPMRIQYAKTDSD 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 55.1 bits (132), Expect = 8e-12
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
IFV L T ++ L + F FG ++ VI D QT K +G+GFVTM + A A +
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 96 NGYALGNRILQVSFKTNKGK 115
N + R V+ K
Sbjct: 73 NPI-IDGRKANVNLAYLGAK 91
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 54.4 bits (130), Expect = 9e-12
Identities = 13/74 (17%), Positives = 30/74 (40%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ N P + + L V + L+ N + F ++ +T+ ++A ++ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 96 NGYALGNRILQVSF 109
NG + L
Sbjct: 64 NGLKIEGYTLVTKV 77
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 56.5 bits (135), Expect = 9e-12
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEA 88
+ + IFV + +TEE L F +G ++ ++++ D + K +GF FVT ++D
Sbjct: 93 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 152
Query: 89 VVAIQSLNGYALGNRILQVSFKTNK 113
+ + + +V +K
Sbjct: 153 DKIVI-QKYHTVNGHNCEVRKALSK 176
Score = 51.9 bits (123), Expect = 6e-10
Identities = 19/63 (30%), Positives = 31/63 (49%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+F+ L+ ET + L F +G + V+RD T + +GFGFVT +E A+ +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 96 NGY 98
Sbjct: 69 PHK 71
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 54.0 bits (129), Expect = 1e-11
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
IFV L+ T + F FG V ++ D TN+ +GFGFVT + D + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 96 NGYALGNRILQVSF 109
+ + + N++++
Sbjct: 61 HFHEINNKMVECKK 74
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 54.8 bits (131), Expect = 1e-11
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 24 LPANTMNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMT 83
LP++ G +F+ NL+ ++EE L ++ FG ++ V+V+ T KG F
Sbjct: 1 LPSDVTEG--KTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFM 58
Query: 84 NYDEAVVAIQSLN------GYALGNRILQVSFKTNKGKTS 117
+ A + + + G L R L+V + + +
Sbjct: 59 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 54.7 bits (131), Expect = 1e-11
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQS--VKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 93
+F+ + + + + + K +GF FV ++ A +A +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 94 SLNG--YALGNRILQVSF 109
L L + V +
Sbjct: 64 KLMPGRIQLWGHQIAVDW 81
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 52.8 bits (126), Expect = 5e-11
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
I V NL ++ + L + ++ ++ K FVT+ N ++A AIQ
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMF 60
Query: 96 NGYALGNRILQVSFKTNKGKTS 117
+ Y+ + L V +
Sbjct: 61 HQYSFRGKDLIVQLQPTDALLC 82
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 52.7 bits (126), Expect = 5e-11
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
+FV + E L + F +G V V + F FVT + A
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVF-----IPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 95 LNGYALGNRILQVSFKTNKGKTS 117
+ + +S K ++
Sbjct: 61 -EDLIIKGISVHISNAEPKHNSN 82
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 53.2 bits (127), Expect = 5e-11
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+FV N+ E E L +F G V S +++ D +T K KG+GF + + A+ A+++L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 96 NGYALGNRILQVSFKTNK 113
NG R L+V ++
Sbjct: 71 NGREFSGRALRVDNAASE 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.3 bits (125), Expect = 5e-11
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
G ++VY + ++L F PFG + + + + FVT + A A
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP------RNCAFVTYEKMESADQA 55
Query: 92 IQSLNGYALGNRILQVSFKTNK 113
+ LNG + + L+V+ +
Sbjct: 56 VAELNGTQVESVQLKVNIARKQ 77
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 52.5 bits (125), Expect = 5e-11
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 36 IFVYNLAPETEESVLWQLF---GPFGAVQSVKVIRDLQTNKC---KGFGFVTMTNYDEAV 89
+FV L+ + + + G FG + V + +VT ++A+
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 70
Query: 90 VAIQSLNGYALGNRILQVS 108
AIQ +N + R L+ S
Sbjct: 71 RAIQCVNNVVVDGRTLKAS 89
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 53.0 bits (126), Expect = 9e-11
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V + +E L QLF +G ++SVK++ D +T + +G+GFV + A AI L
Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104
Query: 96 NGYALGNRILQVSFKTNKGK 115
NG+ + N+ L+V+ + +
Sbjct: 105 NGFNILNKRLKVALAASGHQ 124
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 52.2 bits (124), Expect = 1e-10
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 29 MNGSGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEA 88
+N + C + N+ + + Q ++ + + G V N D+A
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 89 VVAIQSLNGYALGNRILQVSFKTNK 113
+ + L+ L R V T +
Sbjct: 64 RKSER-LHRKKLNGREAFVHVVTLE 87
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.9 bits (121), Expect = 3e-10
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
F+ NL + E + + F + KGFG+ + D ++ SL
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL-LSALSL 76
Query: 96 NGYALGNRILQVSFKTNK 113
N +LGN+ ++V
Sbjct: 77 NEESLGNKRIRVDVADQA 94
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 50.5 bits (120), Expect = 3e-10
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
IFV + +TEE L F +G ++ ++++ D + K +GF FVT + ++V I
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVIQ 63
Query: 96 NGYALGNRILQV 107
+ + +V
Sbjct: 64 KYHTVNGHNCEV 75
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 50.5 bits (120), Expect = 3e-10
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 33 GWCIFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDL-QTNKCKGFGFVTMTNYDEAVV 90
G I + NL+ E +E++L + F FG+++ + + + + F+ N D A
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 91 AIQSLNGYALGNRILQVSFKTNK 113
A+Q +N LGNR + VS K
Sbjct: 64 ALQ-MNRSLLGNREISVSLADKK 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 49.4 bits (117), Expect = 6e-10
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ L P T + L +L P+G + S K I D TNKCKG+GFV + A A+ +L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 96 NGYALGNRILQ 106
+ ++ +
Sbjct: 61 KASGVQAQMAK 71
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 49.4 bits (117), Expect = 1e-09
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 36 IFVYNLAPE-TEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
+ V NL PE L+ LFG +G VQ VK++ K V M + ++A +A+
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKIL-----FNKKENALVQMADGNQAQLAMSH 59
Query: 95 LNGYALGNRILQVSFKTNK 113
LNG+ L + ++++ ++
Sbjct: 60 LNGHKLHGKPIRITLSKHQ 78
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 49.2 bits (117), Expect = 2e-09
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 40 NLAPETEESVLWQLFGPFGAVQSVKVIRDLQT--NKCKGFGFVTMTNYDEAVVAIQSLNG 97
+ E + +G V+S+++ R + G FV T+ + A+Q L G
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 80
Query: 98 YALGNRILQVSF 109
NR++ +
Sbjct: 81 RKFANRVVVTKY 92
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 47.6 bits (113), Expect = 4e-09
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V+ + +L F +G + + + + + +A A+
Sbjct: 7 VTVFGFPQASASYIL-LQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-K 58
Query: 96 NGYALGNR-ILQVSFKTNK 113
+G G ++ V +K
Sbjct: 59 DGRIFGESIMIGVKPCIDK 77
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.8 bits (113), Expect = 5e-09
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
+G C+ + L E+ ++ F P ++ I + G V +++AV A
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIG--PDGRVTGEADVEFATHEDAVAA 71
Query: 92 IQSLNGYALGNRILQVSFKTNKGK 115
+ + + +R +++ + G
Sbjct: 72 MA-KDKANMQHRYVELFLNSTAGT 94
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 46.3 bits (109), Expect = 2e-08
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
S + + V L P L G V + G G V ++ A
Sbjct: 14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCY-------ADVQKDGMGMVEYLRKEDMEYA 66
Query: 92 IQSLNGYALGNRILQVSF 109
++ L+ + + S+
Sbjct: 67 LRKLDDTKFRSHEGETSY 84
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 46.7 bits (110), Expect = 2e-08
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTN-YDEAVVAIQS 94
F +L +T L LF G ++ + + G + EA+ +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWI------DFVRGAKEGIILFKEKAKEALGKAKD 67
Query: 95 LNGYALGNRILQVSFKTNKGKT 116
N L R +V+++ +G+
Sbjct: 68 ANNGNLQLRNKEVTWEVLEGEV 89
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.8 bits (108), Expect = 2e-08
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
++V L P T + L + F FG+++++ K F ++ + D A A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI------DHVKGDSFAYIQYESLDAAQAACAK 72
Query: 95 LNGYALG--NRILQVSFKTNK 113
+ G+ LG +R L+V F +
Sbjct: 73 MRGFPLGGPDRRLRVDFAKSG 93
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 44.7 bits (105), Expect = 7e-08
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 7/76 (9%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ L + L + G V ++ K + F +E+ A +L
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDAL------LMPPNKPYSFARYRTTEESKRAYVTL 76
Query: 96 NGYAL-GNRILQVSFK 110
NG + + +++
Sbjct: 77 NGKEVVDDLGQKITLY 92
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 44.9 bits (105), Expect = 8e-08
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
+G+C+++ L E E + F V+ I K G GFV N + A
Sbjct: 17 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAA 76
Query: 92 IQSLNGYALGNRILQVSFKTNK 113
+ + +GNR +QV T K
Sbjct: 77 LC-RHKQYMGNRFIQVHPITKK 97
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 44.8 bits (105), Expect = 8e-08
Identities = 7/80 (8%), Positives = 20/80 (25%), Gaps = 11/80 (13%)
Query: 35 CIFVYNLAPETEESV-----LWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAV 89
+ + LF + + + + + +N A
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLSAA 60
Query: 90 VAIQSLNGYALGNRILQVSF 109
A L+ + +++ F
Sbjct: 61 DARLRLHKTEFLGKEMKLYF 80
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 43.1 bits (101), Expect = 3e-07
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 35 CIFVYNLAP-ETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQ 93
+ + + + L QL PFG + + + + F + T +A V
Sbjct: 10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLI----LNKINEAFIEMATTEDAQAAVDYY 65
Query: 94 SLNGYALGNRILQVSFKTNKGK 115
+ + + ++V +
Sbjct: 66 TTTPALVFGKPVRVHLSQKYKR 87
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 42.2 bits (98), Expect = 5e-07
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 7/74 (9%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V L P L G V G G V ++ A++ L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCY-------ADVYRDGTGVVEFVRKEDMTYAVRKL 55
Query: 96 NGYALGNRILQVSF 109
+ + + ++
Sbjct: 56 DNTKFRSHEGETAY 69
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.0 bits (98), Expect = 7e-07
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
+ + N+ P E L LF G V V K + + M + +EAV A+
Sbjct: 12 TLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQALID 67
Query: 95 LNGYALG-NRILQVSFKTNK 113
L+ + LG N L+VSF +
Sbjct: 68 LHNHDLGENHHLRVSFSKST 87
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 42.1 bits (98), Expect = 8e-07
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 8/81 (9%)
Query: 35 CIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQS 94
+ V L E+ L + FG + V + K V N D A +
Sbjct: 17 VVHVRGLCESVVEADLVEALEKFGTICYVMM------MPFKRQALVEFENIDSAKECVTF 70
Query: 95 L--NGYALGNRILQVSFKTNK 113
+ + ++ T+K
Sbjct: 71 AADVPVYIAGQQAFFNYSTSK 91
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.7 bits (97), Expect = 1e-06
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ NL +E L + PFG I + +G GF M + ++ I
Sbjct: 21 LYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 96 NGYALGNRILQVS 108
NG + +
Sbjct: 80 NGKFIKTPPGVSA 92
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 40.9 bits (95), Expect = 2e-06
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+++ + + + G V ++++ R KG FV + + A ++
Sbjct: 9 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LHKAFKGSIFVVFDSIESAKKFVE-T 66
Query: 96 NGYALGNRILQVSFK 110
G L + FK
Sbjct: 67 PGQKYKETDLLILFK 81
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 40.3 bits (93), Expect = 4e-06
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 32 SGWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVA 91
S I NL T + + + F FG++ V + V EA A
Sbjct: 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFLEPLEARKA 62
Query: 92 IQSLNGYALGNRILQVSF 109
+ L + L + +
Sbjct: 63 FRHLAYSKFHHVPLYLEW 80
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 38.7 bits (89), Expect = 8e-06
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ V NL ++ +++ F G + V V K F + YD +A +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD--SLKKNFRFARIEFARYDG-ALAAITK 59
Query: 96 NGYALGNRILQVSFKT 111
+G + VS T
Sbjct: 60 THKVVGQNEIIVSHLT 75
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.7 bits (89), Expect = 1e-05
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 27 NTMNGS-GWCIFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNY 85
+ M+G+ + + L E E+ + L PF + ++ K K F+ +
Sbjct: 1 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPF------GKVTNILMLKGKNQAFLELATE 54
Query: 86 DEAVVAIQ--SLNGYALGNRILQVSFKTNK 113
+ A+ + S L N+ + + + +K
Sbjct: 55 EAAITMVNYYSAVTPHLRNQPIYIQYSNHK 84
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 35.7 bits (81), Expect = 1e-04
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
I + L + + L + ++ +K KG FVT+ N ++A AI +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 96 NGYALGNRILQVSFKTNK 113
+ L R L V +
Sbjct: 54 HQSRLRERELSVQLQPTD 71
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
[TaxId: 35158]}
Length = 121
Score = 26.3 bits (58), Expect = 0.59
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 92 IQSLNGYALGNRILQVSFKTNKGKTS 117
I ++ + G+ I +SF+TN G+
Sbjct: 58 ISNMTIRS-GDYIDNISFETNMGRRF 82
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
caldolyticus [TaxId: 1394]}
Length = 66
Score = 25.5 bits (56), Expect = 0.60
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 72 NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ----VSF---KTNKGK 115
N KG+GF+ + + V ++ G G + L+ VSF + N+G
Sbjct: 10 NNEKGYGFIEVEGGSDVFVHFTAIQGE--GFKTLEEGQEVSFEIVQGNRGP 58
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus
thermophilus [TaxId: 274]}
Length = 292
Score = 26.3 bits (57), Expect = 0.89
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 57 FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAI 92
G +V+ + +L +G F T+ N A +
Sbjct: 249 IGVEHAVRQVAELLEAGVEGVHFYTL-NKSPATRMV 283
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli
[TaxId: 562]}
Length = 79
Score = 25.1 bits (55), Expect = 1.1
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 75 KGFGFVTMTNYDEAVVAIQSLNGYALGNRILQVSFKTNKGKTS 117
KGFGF+ + + + G+RI+ + K + S
Sbjct: 28 KGFGFLEVDAQKSYFIPPPQMKKVMHGDRII-AVIHSEKERES 69
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima
[TaxId: 2336]}
Length = 66
Score = 24.7 bits (54), Expect = 1.2
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 72 NKCKGFGFVTMTNYDEAVVAIQSLNGYALGNRILQ----VSFKTNKGK 115
+ KG+GF+T + V ++ G + L+ V F+ +GK
Sbjct: 9 DSKKGYGFITKDEGGDVFVHWSAIEME--GFKTLKEGQVVEFEIQEGK 54
>d1b5ta_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase
{Escherichia coli [TaxId: 562]}
Length = 275
Score = 25.5 bits (55), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 57 FGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAI 92
GA ++ +++ L K F F T+ N E AI
Sbjct: 232 VGANIAMDMVKILSREGVKDFHFYTL-NRAEMSYAI 266
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 24.8 bits (54), Expect = 1.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 72 NKCKGFGFVTMTNYDEAVVAIQS 94
N G+GF+ + E V Q+
Sbjct: 17 NVRNGYGFINRNDTKEDVFVHQT 39
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 25.5 bits (56), Expect = 2.1
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 61 QSVKVIRDLQTNKCKGFG---FVTMTNYDEAVVAIQS 94
+ V GF F+ T+ D+ +VA++S
Sbjct: 244 GDIAVSHVGAVVPTHGFSSFKFIPNTD-DQIIVALKS 279
>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent
phosphoglycerate mutase, substrate-binding domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 234
Score = 25.4 bits (55), Expect = 2.1
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 68 DLQTNKCKGFGFVTMTNYDE 87
D K FV +T++ E
Sbjct: 205 DRGPKHPKHLFFVCLTHFSE 224
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 196
Score = 24.4 bits (53), Expect = 3.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 82 MTNYDEAVVAIQSLNGYALGNRILQ 106
+ N D I+SLNG + + IL
Sbjct: 172 LKNLDIR--CIRSLNGCRVTDEILH 194
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 23.7 bits (51), Expect = 6.2
Identities = 7/46 (15%), Positives = 14/46 (30%)
Query: 43 PETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEA 88
+ LFGP + + V+ DL + + +
Sbjct: 85 EVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTLILGDSGND 130
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 22.8 bits (49), Expect = 6.5
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 72 NKCKGFGFVTMTNYDEAV-VAIQSLNGYALGNRILQ----VSFKTNKGK 115
N KGFGF+T + + V V ++ G + L VSF G
Sbjct: 12 NADKGFGFITPDDGSKDVFVHFSAIQND--GYKSLDEGQKVSFTIESGA 58
>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke
(Helianthus tuberosus) [TaxId: 4233]}
Length = 145
Score = 23.4 bits (50), Expect = 6.8
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 76 GFGFVTMTNYDEAVVAIQSLNG-YALGNRILQVSFKTNKGKTS 117
DE + AI G Y + ++F+TNK
Sbjct: 64 DKAETITFAEDEDITAISGTFGAYYHMTVVTSLTFQTNKKVYG 106
>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 100
Score = 22.9 bits (49), Expect = 9.5
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 36 IFVYNLAPETEESVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 95
+ E + S L+QLF FG +Q + I D FV+++ ++ +A+ +
Sbjct: 18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSA-------FVSLSQPEQVQIAVNTS 69
Query: 96 N 96
Sbjct: 70 K 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 401,551
Number of extensions: 15710
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 98
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)