BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1332
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q23202|SBDS_CAEEL Ribosome maturation protein SBDS OS=Caenorhabditis elegans
GN=sbds-1 PE=3 SV=2
Length = 253
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLID 66
IP L++ + IERA+M++RV + K+ K + KL + VE ++W G L ++ LI+
Sbjct: 159 AIPKLRETLKIERAKMKIRVAIPT--KEAKSVHTKLKTLFSDVEVDDWQDGSLEMVGLIE 216
Query: 67 PGKYREIDELVRTETRGQGTLELLNLKEVTEGE 99
PG +R +D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 217 PGSFRALDDLVRNETKGHGRLEILSLKDVVEGE 249
>sp|Q86KZ5|SBDS_DICDI Ribosome maturation protein SBDS OS=Dictyostelium discoideum
GN=sbds PE=3 SV=2
Length = 274
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 65/95 (68%), Gaps = 3/95 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKL-KEKLVKCATSVENEEWSGGGLLLICL 64
+VI + + I+RAQMR+ + + K+ K L ++KL+ + +E E+ GGGL ++CL
Sbjct: 156 EVIKQISSVIPIQRAQMRLNITIPT--KESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCL 213
Query: 65 IDPGKYREIDELVRTETRGQGTLELLNLKEVTEGE 99
+DPG YR+IDEL++ ET+G+G ++++NL EGE
Sbjct: 214 VDPGSYRKIDELIKQETKGKGFIDIINLAVAKEGE 248
>sp|Q5ZIY4|SBDS_CHICK Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1
Length = 250
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 73/98 (74%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + VK+ KKLKEKL +ENE++ L ++CLI
Sbjct: 156 EVIRQLKETMQIERAHMRLRFILP--VKEGKKLKEKLKPLIKVIENEDFHDQ-LEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL+R+ET+G+GTLE+L+LK+V EG+E LE
Sbjct: 213 DPGCFREIDELIRSETKGKGTLEVLSLKDVEEGDEKLE 250
>sp|Q6DIT8|SBDS_XENTR Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2
SV=1
Length = 250
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLID 66
VI LK+ M IERA MR+R + A K K K + T EN + L ++CLID
Sbjct: 157 VIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPLIKHTESENFDQE---LEIVCLID 213
Query: 67 PGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
PG +REIDEL+R ET+G+GTLE+L+LK+V EG+E E
Sbjct: 214 PGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEKFE 250
>sp|A5D8M6|SBDS_XENLA Ribosome maturation protein SBDS OS=Xenopus laevis GN=sbds PE=2
SV=1
Length = 250
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLID 66
VI LK+ M IERA MR+R V A K K K + EN + L ++CLID
Sbjct: 157 VIKQLKETMQIERAHMRLRFIVPAKDGKKLKEKLKPLIKHIESENFDQE---LEIVCLID 213
Query: 67 PGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
PG +REIDEL+R ET+G+GTLE+L+LK+V EG+E E
Sbjct: 214 PGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEKFE 250
>sp|Q5RAZ2|SBDS_PONAB Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1
Length = 250
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + V + KKLKEKL +E+E++ G L ++CLI
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLIKVIESEDY-GQQLEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 213 DPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
>sp|Q9Y3A5|SBDS_HUMAN Ribosome maturation protein SBDS OS=Homo sapiens GN=SBDS PE=1 SV=4
Length = 250
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + V + KKLKEKL +E+E++ G L ++CLI
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLIKVIESEDY-GQQLEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 213 DPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
>sp|Q5RK30|SBDS_RAT Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2
SV=1
Length = 250
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + V + KKLKEKL VE+E++S L ++CLI
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFLLP--VNEGKKLKEKLKPLMKVVESEDYSQQ-LEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 213 DPGCFREIDELIKKETKGKGSLEVLSLKDVEEGDEKFE 250
>sp|P70122|SBDS_MOUSE Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4
Length = 250
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + V + KKLKEKL VE+E++S L ++CLI
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLMKVVESEDYSQQ-LEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 213 DPGCFREIDELIKKETKGRGSLEVLSLKDVEEGDEKFE 250
>sp|Q3SWZ6|SBDS_BOVIN Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1
Length = 250
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLI 65
+VI LK+ M IERA MR+R + V + KKLKEKL +E+E++ G L ++CLI
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILP--VNEGKKLKEKLKPLIKVIESEDY-GQQLEIVCLI 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +RE+DEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 213 DPGCFREVDELIKKETKGKGSLEVLSLKDVEEGDEKFE 250
>sp|O14179|SDO1_SCHPO Ribosome maturation protein sdo1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sdo1 PE=3 SV=1
Length = 246
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 12 KQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYR 71
K + I RA+MR+R+ V VK K L+E+L A +E EE I L+ PG Y+
Sbjct: 164 KNEIPIVRARMRIRIVVD--VKQGKALRERLRSLADEIE-EENIDDEYECIALVIPGNYK 220
Query: 72 EIDELVRTETRGQGTLELLNLKE 94
IDELVR ET+ +G +++L++ E
Sbjct: 221 LIDELVRNETKNRGMVQVLDMSE 243
>sp|Q895L2|RS2_CLOTE 30S ribosomal protein S2 OS=Clostridium tetani (strain
Massachusetts / E88) GN=rpsB PE=3 SV=1
Length = 233
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGVKDV----------KKLKEKLVKCATSVENEEWSG 56
+I K +E+A +R EV+A KDV + ++E+ V+C N W G
Sbjct: 40 IIDLQKTVKKVEQAYNFIR-EVAAEGKDVIFVGTKKQAQEAIQEEAVRCDMHFVNNRWLG 98
Query: 57 GGLLLICLIDPGKYREIDELVRTETRGQGTLELLNLKEV 95
G L I G+ R ++EL + E GT E+L KEV
Sbjct: 99 GMLTNFSTIK-GRIRTLEELEQMEQ--DGTFEVLPKKEV 134
>sp|P0C7L7|YUM14_USTMA Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=UM04112 PE=3 SV=1
Length = 1567
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 15/97 (15%)
Query: 10 TLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG------GGLLLIC 63
T K S+ R+ R+ E+ V V+ + E+ ENEE SG GG +L+
Sbjct: 981 TCKAVESLSRSGGRISYELLGAV--VRYVVER-------AENEELSGAADGDVGGAILVF 1031
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEE 100
G+ R+ + + T RGQ +E+L L +E
Sbjct: 1032 CPGVGEIRQAIDAITTSVRGQSKVEILPLHANLSADE 1068
>sp|Q7TPA5|SPA11_RAT Serpin A11 OS=Rattus norvegicus GN=Serpina11 PE=2 SV=2
Length = 422
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 53 EWSGGGLLLICLIDPGKYREIDELVRTET 81
E+SG LLL+ L DPGK ++++ ++ ET
Sbjct: 267 EYSGTALLLLVLPDPGKMQQVEAALQPET 295
>sp|Q8CIE0|SPA11_MOUSE Serpin A11 OS=Mus musculus GN=Serpina11 PE=2 SV=1
Length = 424
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 53 EWSGGGLLLICLIDPGKYREIDELVRTET 81
E+SG LLL+ L DPGK ++++ ++ ET
Sbjct: 269 EYSGTALLLLVLPDPGKMQQVEAALQPET 297
>sp|B4JTF5|HH_DROGR Protein hedgehog OS=Drosophila grimshawi GN=hh PE=3 SV=1
Length = 479
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 9 PTLKQCMSIERAQMRVRVEVSAGVKDV--KKLKEKLVKCATSVENEEWSGGGLLL 61
P K + + + + R E G + K+ KEKLV ATSV N EW G LL+
Sbjct: 130 PKFKDLVPLYNSDILFRDEEGTGADRMMTKRCKEKLVMLATSVMN-EWPGVKLLV 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,725,603
Number of Sequences: 539616
Number of extensions: 1321419
Number of successful extensions: 3133
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3099
Number of HSP's gapped (non-prelim): 29
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)