Query psy1332
Match_columns 103
No_of_seqs 102 out of 276
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 16:28:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdo_A Ribosome maturation pro 100.0 2.1E-30 7E-35 196.2 4.2 99 2-103 154-252 (252)
2 2wbm_A MTHSBDS, ribosome matur 99.9 2.7E-27 9.4E-32 179.0 9.2 87 2-91 165-252 (252)
3 1t95_A Hypothetical protein AF 99.9 8.4E-27 2.9E-31 175.3 10.3 88 2-92 150-238 (240)
4 3lh2_S 4E10_1VI7A_S0_002_N (T8 96.9 0.002 6.8E-08 39.3 5.0 62 24-88 10-71 (76)
5 1vi7_A Hypothetical protein YI 95.4 0.071 2.4E-06 39.2 7.8 65 22-89 140-204 (217)
6 2cve_A Hypothetical protein TT 95.3 0.07 2.4E-06 38.5 7.2 64 21-87 127-190 (191)
7 2dy1_A Elongation factor G; tr 94.7 0.11 3.8E-06 43.0 7.7 67 21-89 575-641 (665)
8 2xex_A Elongation factor G; GT 94.6 0.12 4.3E-06 42.9 7.9 67 21-89 604-670 (693)
9 1dar_A EF-G, elongation factor 94.5 0.13 4.5E-06 42.8 7.9 68 20-89 604-671 (691)
10 2rdo_7 EF-G, elongation factor 94.1 0.13 4.3E-06 43.0 6.9 68 20-89 615-682 (704)
11 3j25_A Tetracycline resistance 93.6 0.08 2.7E-06 43.6 4.8 65 22-88 539-603 (638)
12 4fn5_A EF-G 1, elongation fact 93.5 0.27 9.1E-06 40.9 7.8 68 20-89 621-688 (709)
13 3e3x_A BIPA; MCSG,PSI2, struct 93.4 0.19 6.6E-06 38.9 6.4 66 22-89 128-194 (332)
14 1n0u_A EF-2, elongation factor 92.6 0.32 1.1E-05 41.3 7.2 68 20-89 727-796 (842)
15 2ywe_A GTP-binding protein LEP 92.4 0.35 1.2E-05 39.9 6.9 65 22-88 408-474 (600)
16 3cb4_D GTP-binding protein LEP 91.7 0.28 9.6E-06 40.4 5.6 65 22-88 404-469 (599)
17 2f1f_A Acetolactate synthase i 66.7 26 0.0009 24.0 7.0 68 17-92 83-151 (164)
18 2cpg_A REPA protein, transcrip 61.1 8.9 0.00031 19.9 3.0 25 22-46 1-25 (45)
19 2pc6_A Probable acetolactate s 52.3 54 0.0018 22.5 8.2 68 17-92 84-151 (165)
20 1r75_A Hypothetical protein; s 44.4 9.8 0.00033 26.0 1.6 41 21-69 63-111 (141)
21 2zbc_A 83AA long hypothetical 42.0 47 0.0016 18.9 6.4 55 23-80 5-59 (83)
22 2fe0_A SMP-1, small myristoyla 40.1 14 0.00046 25.1 1.8 40 21-69 63-102 (136)
23 3oq2_A Crispr-associated prote 33.8 87 0.003 19.6 6.8 67 22-95 8-81 (103)
24 1vjq_A Designed protein; struc 32.0 45 0.0015 19.3 3.1 22 59-80 39-60 (79)
25 2gjh_A Designed protein; oblig 28.3 88 0.003 17.8 5.8 29 42-70 27-55 (62)
26 3nme_A Ptpkis1 protein, SEX4 g 26.8 10 0.00034 28.1 -0.7 16 56-71 205-220 (294)
27 2ivy_A Hypothetical protein SS 24.0 1.3E+02 0.0046 18.6 6.8 67 22-95 3-78 (101)
28 2cvi_A 75AA long hypothetical 23.0 1.2E+02 0.0039 17.4 7.5 54 24-80 6-59 (83)
29 2gjf_A Designed protein; proca 22.7 1.2E+02 0.004 17.4 3.9 22 59-80 47-68 (78)
30 1i1g_A Transcriptional regulat 21.9 1.5E+02 0.0051 18.3 6.3 54 23-79 67-120 (141)
No 1
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein structure, RNA-interacting protein mutation, phosphoprotein, ribosome biogenesis; NMR {Homo sapiens} PDB: 2l9n_A
Probab=99.96 E-value=2.1e-30 Score=196.18 Aligned_cols=99 Identities=51% Similarity=0.775 Sum_probs=94.7
Q ss_pred ccHhHHHHhhhhhcCccceeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhc
Q psy1332 2 YYYSQVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTET 81 (103)
Q Consensus 2 ~QalevIk~Lk~~iPI~RA~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~t 81 (103)
+||+++||+|+++|||+||+|+++|+ +|.++++++++.|.+++..+++++|.++ |+++|+||||+||+|+++++++|
T Consensus 154 ~Qalevik~L~~~iPI~ra~m~l~v~--vp~~~~~~~~~~l~~~~~~v~~ee~~~~-~~~v~~I~pg~~~~~~~~v~~~t 230 (252)
T 2kdo_A 154 QQALEVIKQLKEKMKIERAHMRLRFI--LPVNEGKKLKEKLKPLIKVIESEDYGQQ-LEIVCLIDPGCFREIDELIKKET 230 (252)
T ss_dssp HHHHHHHHHHHHHSCCEEECCCEEEE--CBHHHHHHHTTTHHHHTCEEEEECCSSB-CCEEECCCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhCCeeeeeEEEEEE--EcHHHHHHHHHHHHHhhCcceeeeccCC-eEEEEEECCcchHHHHHHHHHhc
Confidence 69999999999999999999999999 9999999999999999777999999665 99999999999999999999999
Q ss_pred CCceEEEEEEeeeeecCccccC
Q psy1332 82 RGQGTLELLNLKEVTEGEEVLE 103 (103)
Q Consensus 82 kG~g~vevl~~~~~~eg~~~~~ 103 (103)
+|+|+++||++++++||++.++
T Consensus 231 kG~~~~evl~~~~~~~~~~~~~ 252 (252)
T 2kdo_A 231 KGKGSLEVLNLKDVEEGDEKFE 252 (252)
T ss_dssp TTTSEEEECCCSSSCCCBSCCC
T ss_pred CCCEEEEEEEEeeeecCccccC
Confidence 9999999999999999998764
No 2
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.94 E-value=2.7e-27 Score=179.02 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=83.3
Q ss_pred ccHhHHHHhhhhhcCccceeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeee-CCeEEEEEEeCCCChHHHHHHHhhh
Q psy1332 2 YYYSQVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 2 ~QalevIk~Lk~~iPI~RA~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~-~~~~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
+||+++||+|+++|||+||+|+++|+ +|.++++++++.|..++ ++++|+|. ||+|.++|+||||+||+|+++++++
T Consensus 165 ~Qalevik~L~~~iPI~ra~m~l~v~--ip~~~~~~~~~~l~~~~-~v~~ee~~~dgs~~~v~~i~pg~~~~~~~~v~~~ 241 (252)
T 2wbm_A 165 EQVNIVLKAIRTKIPIKFEKVRVAIK--IPGEMAGSAYGVISNFG-KITNEEWQNDGSWIAVVEIPGGLQDSFYQKLSEL 241 (252)
T ss_dssp HHHHHHHHHHTTTSCCEECEEEEEEE--ECGGGHHHHHHHHHHHC-EEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCeeEeeEEEEEE--EcHHHHHHHHHHHHhhC-eeeeecccCCCcEEEEEEECCccHHHHHHHHHHh
Confidence 69999999999999999999999999 99999999999999998 58999996 6899999999999999999999999
Q ss_pred cCCceEEEEEE
Q psy1332 81 TRGQGTLELLN 91 (103)
Q Consensus 81 tkG~g~vevl~ 91 (103)
|+|+|++|||+
T Consensus 242 tkG~~~~~vl~ 252 (252)
T 2wbm_A 242 TGGNVETRLIK 252 (252)
T ss_dssp TTTCCEEEECC
T ss_pred cCCeEEEEEcC
Confidence 99999999974
No 3
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=99.94 E-value=8.4e-27 Score=175.34 Aligned_cols=88 Identities=17% Similarity=0.365 Sum_probs=84.2
Q ss_pred ccHhHHHHhhhhhcCccceeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeee-CCeEEEEEEeCCCChHHHHHHHhhh
Q psy1332 2 YYYSQVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 2 ~QalevIk~Lk~~iPI~RA~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~-~~~~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
+||+++||+|+++|||+||+|+++|+ +|.++++++++.|..++ .+++|+|+ ||+|.++|+||||+||+|+++++++
T Consensus 150 ~Qa~evik~L~~~iPI~ra~m~~~v~--vp~~~~~~~~~~l~~~~-~v~~ee~~~dgs~~~v~~Ippg~~~~~~~~l~~~ 226 (240)
T 1t95_A 150 AQVKDIVKALKPILPLKFEEMEIAIK--IPPEHTGRAISALYNFG-GVTREEWQRDGSWICVMRIPSGMYGDLMDLLGKV 226 (240)
T ss_dssp TTHHHHHHHHTTTSCCEECEEEEEEE--ECGGGHHHHHHHHHHHC-CEEEEEECTTSCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceeeEEEEEEE--EcHHHHHHHHHHHHhhC-eeeeecccCCCcEEEEEEECCccHHHHHHHHHHh
Confidence 69999999999999999999999999 99999999999999998 59999996 6899999999999999999999999
Q ss_pred cCCceEEEEEEe
Q psy1332 81 TRGQGTLELLNL 92 (103)
Q Consensus 81 tkG~g~vevl~~ 92 (103)
|+|+|+++||+-
T Consensus 227 tkG~~~~~vl~~ 238 (240)
T 1t95_A 227 AKGEALTKVLRR 238 (240)
T ss_dssp HTTCCEEEEEEE
T ss_pred cCCeEEEEEecc
Confidence 999999999874
No 4
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=96.86 E-value=0.002 Score=39.32 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=51.6
Q ss_pred EEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEE
Q psy1332 24 VRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLE 88 (103)
Q Consensus 24 l~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~ve 88 (103)
.+++ +|=...+++...|.+.+..+.+.++ +....+.+.+|++....+.+.+.+.|.|+..++
T Consensus 10 ~~l~--~dY~~~g~v~~~L~~~~~~I~~~~Y-~~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~~ 71 (76)
T 3lh2_S 10 YTLQ--ANWFDITGILWLLGQVDGKIINSDV-QAFVLLRVALPAAKVAEFSAKLADFSGGSLQLL 71 (76)
T ss_dssp EEEE--ECHHHHHHHHHHHHHTTCEEEEEEE-EEEEEEEEEECC-CC-CHHHHHHHHHTTCCCBC
T ss_pred EEEE--EcccCHHHHHHHHHHCCCEEEcccc-cCeEEEEEEECHHHHHHHHHHHHHHhCCEEEEE
Confidence 4566 8878889999999999888888889 456999999999999999999999999987653
No 5
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=95.42 E-value=0.071 Score=39.15 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=55.5
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
-+++++ +|-...+++...|.+.+..+.++++ ++...+.+.+++.....+.+.+.+.|.|+..++.
T Consensus 140 ~~~~i~--~~Y~~~~~v~~~l~~~~~~i~~~~y-~~~V~~~l~v~~~~~~~~~~~l~~~t~G~~~~~~ 204 (217)
T 1vi7_A 140 TEYTLQ--CEYHQLTGIEALLGQCDGKIINSDY-QAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLA 204 (217)
T ss_dssp EEEEEE--ECTTTHHHHHHHHHHTTCEEEEEEE-SSSEEEEEEECSSTHHHHHHHHHHHHTTCCCCEE
T ss_pred eEEEEE--EccchHHHHHHHHHHCCCEEEceEe-cCCEEEEEEECHHHHHHHHHHHHHHhCCeEEEEe
Confidence 445566 8888899999999999887888888 4569999999999999999999999999886653
No 6
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=95.26 E-value=0.07 Score=38.50 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred eeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEE
Q psy1332 21 QMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTL 87 (103)
Q Consensus 21 ~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~v 87 (103)
.-.++++ +|-...+++...|.+.+ .+.++++.++...+.+.+++.....+.+.+.+.|.|+..+
T Consensus 127 ~~~~~~~--~~Y~~~~~v~~~l~~~~-~i~~~~y~~~gV~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 127 RVGLAFL--VPFAEVGRVYALLEARA-LKAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EEEEEEE--ECGGGHHHHHHHHHHTT-CCEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred eeEEEEE--EchhhHHHHHHHHHHcC-ceeccEEcCCeEEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 3445566 88888999999999999 8888889654489999999999999999999999998754
No 7
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=94.66 E-value=0.11 Score=42.97 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=58.2
Q ss_pred eeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 21 QMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 21 ~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
-|++.|+ +|.++.+.+++.|.+-...+...+..++...+.+.+|-.-.-.+.+-+++.|+|.|....
T Consensus 575 i~~~~i~--~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~ 641 (665)
T 2dy1_A 575 IYRLKVL--APQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTL 641 (665)
T ss_dssp EEEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEE--ECHHHHHHHHHHHHHCCCEEeCcEecCCeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEE
Confidence 4778888 999999999999999888787776667889999999988888888889999999998754
No 8
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.60 E-value=0.12 Score=42.89 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=57.7
Q ss_pred eeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 21 QMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 21 ~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
-|++.|+ +|.++.+.+++.|.+-...+...+..+|...+.+.+|-.---.+.+-+++.|+|.|....
T Consensus 604 i~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 670 (693)
T 2xex_A 604 MMKVTIE--MPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTM 670 (693)
T ss_dssp EEEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEE--EcHHHHHHHHHHHHhCCcEeecccccCCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEE
Confidence 4778888 999999999999999888787766667889999999987777888888999999998764
No 9
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=94.54 E-value=0.13 Score=42.76 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=58.4
Q ss_pred eeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 20 AQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 20 A~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
--|++.|+ +|.++.+.+++.|.+-...+...+..+|...+.+.+|-.---.+.+-+++.|+|.|....
T Consensus 604 Pi~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 671 (691)
T 1dar_A 604 PIMRVEVT--TPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVM 671 (691)
T ss_dssp EEEEEEEE--ECTTTTTHHHHHHHHTTCCEEEEEEETTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEE--EcHHHHhHHHHHHHHCCceeecceecCCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEE
Confidence 34778888 999999999999999888887776667889999999988777888888999999998764
No 10
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.10 E-value=0.13 Score=42.97 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=57.7
Q ss_pred eeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 20 AQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 20 A~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
--|++.|+ +|.++.+.+++.|.+-...+...+..+|...+.+.+|-.---.+.+-+++.|+|.|....
T Consensus 615 Pi~~~~i~--~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~ 682 (704)
T 2rdo_7 615 PIMKVEVE--TPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM 682 (704)
T ss_pred eEEEEEEE--eCHHHHhHHHHHHHhCCceEeCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEE
Confidence 34788888 999999999999999887777766656789999999987777788888999999998754
No 11
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=93.58 E-value=0.08 Score=43.58 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=56.8
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEE
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLE 88 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~ve 88 (103)
|++.|+ +|.++.+.+++.|.+-...+...+-.+|...+.+.+|-.---.+.+-+++.|+|+|...
T Consensus 539 ~~veI~--vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~ 603 (638)
T 3j25_A 539 LSFKIY--APQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVCL 603 (638)
T ss_dssp TTCEEE--EETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEE
T ss_pred EEEEEE--ECHHHHHHHHHHHHhCCcEEeCeEecCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEE
Confidence 677888 99999999999999988878765556888999999998888888999999999999874
No 12
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.48 E-value=0.27 Score=40.87 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=55.9
Q ss_pred eeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 20 AQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 20 A~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
.-|++.|+ +|.++.+.+++.|.+-...|.+.+..++...+.+.+|-.---.+.+-+++.|+|.|....
T Consensus 621 Pi~~veI~--~p~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~ 688 (709)
T 4fn5_A 621 PIMKVEVV--TPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSM 688 (709)
T ss_dssp EEEEEEEE--EETTTHHHHHHHHGGGTCEEEEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEEC
T ss_pred ceEEEEEE--ECHHHHHHHHHHHHhcCCEEeceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEE
Confidence 34778888 999999999999999887777665557778899999965555788888999999998753
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=93.39 E-value=0.19 Score=38.91 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=52.0
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhcccceeeeee-CCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWS-GGGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~-~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
|++.|. +|.++.+.+++.|..-...+.+.+.. ++...+.+.+|-.---.+.+-+++.|+|.|....
T Consensus 128 ~~v~I~--vPee~~G~Vm~~L~~RRG~i~~m~~~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~ 194 (332)
T 3e3x_A 128 ETVTID--VMEEHQGGIMENIGLRXGELXDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYH 194 (332)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEECSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEE
T ss_pred EEEEEE--ECHHHHHHHHHHHHhhcccccCceECCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEE
Confidence 566777 99999999999999988777765554 4566799999985545667777888999998754
No 14
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=92.63 E-value=0.32 Score=41.34 Aligned_cols=68 Identities=16% Similarity=0.087 Sum_probs=56.2
Q ss_pred eeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeC--CeEEEEEEeCCCChHHHHHHHhhhcCCceEEEE
Q psy1332 20 AQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSG--GGLLLICLIDPGKYREIDELVRTETRGQGTLEL 89 (103)
Q Consensus 20 A~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~--~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vev 89 (103)
.=|++.|+ +|.++.+.++.-|.+-...|..++-.+ +...+.+.+|-.---.+.+-+++.|+|+|....
T Consensus 727 Pi~~veI~--vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~ 796 (842)
T 1n0u_A 727 PVFLVEIQ--CPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQM 796 (842)
T ss_dssp EEEEEEEE--ECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEEE--ccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEE
Confidence 34788888 999999999999999988776655422 458999999988888888889999999998654
No 15
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=92.39 E-value=0.35 Score=39.90 Aligned_cols=65 Identities=9% Similarity=0.098 Sum_probs=54.1
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhcccceeeee-eCCeEEEEEEeCCCCh-HHHHHHHhhhcCCceEEE
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEW-SGGGLLLICLIDPGKY-REIDELVRTETRGQGTLE 88 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~-~~~~~~~v~~I~Pg~~-r~i~~lv~~~tkG~g~ve 88 (103)
|++.|. +|.++.+.+.+.+.+-...+..-+. +++...+.+.+|-.-. ..+.+-+++.|+|.|+..
T Consensus 408 ~~~~i~--vP~e~~G~v~~~~~~rrG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~ 474 (600)
T 2ywe_A 408 VLVTII--TPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYD 474 (600)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEE--ecHHHHHHHHHHHHHcCcEEeccEEcCCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEE
Confidence 667777 9999999999999998877766555 4567889999998877 788888899999999765
No 16
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=91.71 E-value=0.28 Score=40.39 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=51.4
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCCh-HHHHHHHhhhcCCceEEE
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKY-REIDELVRTETRGQGTLE 88 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~-r~i~~lv~~~tkG~g~ve 88 (103)
|++.|. +|.++.+.+++.+.+--..+..-+..++...+.+.+|-.-- ..+.+-+++.|+|.|+..
T Consensus 404 ~~~~i~--~P~e~~G~v~~~~~~rrG~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~ 469 (599)
T 3cb4_D 404 AECHML--LPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLD 469 (599)
T ss_dssp EEEEEE--EEGGGHHHHHHHHHHTTCEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEE
T ss_pred eEEEEE--eCHHHHHHHHHHHHHcCcEEeCcEecCCeEEEEEEecHHHHHHHHHHhhhhcCCcEEEEE
Confidence 667777 99999999999999987766665555667888999996554 455666788899999875
No 17
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=66.74 E-value=26 Score=24.01 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=48.6
Q ss_pred ccceeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCce-EEEEEEe
Q psy1332 17 IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQG-TLELLNL 92 (103)
Q Consensus 17 I~RA~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g-~vevl~~ 92 (103)
+.|.-|-++|. .++.....+.....-|.+++. |.+.+++.+.+.=+|+.-..+.+++ +.-| -+|+...
T Consensus 83 v~rEl~liKv~--~~~~~r~~i~~~~~~fra~iv--dv~~~~~~ie~tg~~~ki~~~~~~l----~~~g~i~e~~Rt 151 (164)
T 2f1f_A 83 VEREIMLVKIQ--ASGYGRDEVKRNTEIFRGQII--DVTPSLYTVQLAGTSGKLDAFLASI----RDVAKIVEVARS 151 (164)
T ss_dssp EEEEEEEEEEE--CCTHHHHHHHHHHHHTTCEEE--EECSSEEEEEEEECHHHHHHHHHHH----TTTSEEEEEEEC
T ss_pred ceeEEEEEEEE--CCcccHHHHHHHHHHcCCEEE--EECCCEEEEEEeCCHHHHHHHHHHH----HhcCCEEEEECc
Confidence 88999999999 888777788888888887654 3456778887776666666666554 3345 6666553
No 18
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=61.09 E-value=8.9 Score=19.94 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=14.6
Q ss_pred eEEEEEEeeCcchHHHHHHHHHhhc
Q psy1332 22 MRVRVEVSAGVKDVKKLKEKLVKCA 46 (103)
Q Consensus 22 Mrl~v~~~ip~~~~~~~~~~l~~~~ 46 (103)
|+-+++|++|.+....+...-...+
T Consensus 1 Mk~ritv~l~~~l~~~Ld~~a~~~g 25 (45)
T 2cpg_A 1 MKKRLTITLSESVLENLEKMAREMG 25 (45)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHT
T ss_pred CCceEEEecCHHHHHHHHHHHHHHC
Confidence 5666666689766555544444333
No 19
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=52.28 E-value=54 Score=22.48 Aligned_cols=68 Identities=19% Similarity=0.077 Sum_probs=49.1
Q ss_pred ccceeeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcCCceEEEEEEe
Q psy1332 17 IERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 92 (103)
Q Consensus 17 I~RA~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tkG~g~vevl~~ 92 (103)
+.|.-|-++|. .++.....+.....-|.+++. |.+.+++.+.+.=+|+.-..+.+++ +.-|-+|+...
T Consensus 84 v~rEl~liKv~--~~~~~r~~i~~~~~~fra~iv--dv~~~~~~ie~tg~~~ki~~~~~~l----~~~gi~e~~Rt 151 (165)
T 2pc6_A 84 VERELMLVKVR--AVGKDREEMKRLADIFRGNII--DVTNELYTIELTGTRSKLDGFLQAV----DCNLILEIART 151 (165)
T ss_dssp EEEEEEEEEEE--CCTHHHHHHHHHHHHTTCEEE--EEETTEEEEEEEECHHHHHHHHHHS----CGGGEEEEEEC
T ss_pred eeeEEEEEEEe--CCcccHHHHHHHHHHcCCEEE--EEcCCEEEEEEcCCHHHHHHHHHHh----hhcCCEEEEcc
Confidence 88999999999 888777788888888887654 3457778888776666655555554 44567776653
No 20
>1r75_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 1.86A {Leishmania major} SCOP: b.134.1.1
Probab=44.36 E-value=9.8 Score=26.04 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.9
Q ss_pred eeEEEEEEeeCcchHHHHHHHHHhhcccce---e-----eeeeCCeEEEEEEeCCCC
Q psy1332 21 QMRVRVEVSAGVKDVKKLKEKLVKCATSVE---N-----EEWSGGGLLLICLIDPGK 69 (103)
Q Consensus 21 ~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie---~-----e~~~~~~~~~v~~I~Pg~ 69 (103)
.|.|+++ +++.. .|+.++.+-. + ++..+|++.+.+.|.|+-
T Consensus 63 eMhV~v~--Fg~~S------~V~aLG~T~~~~~~~~~~~~~~~~G~~~~~v~V~PlE 111 (141)
T 1r75_A 63 IIHVAVL--FDYDS------QIVPLGDTTAFRIDDPDEGNEDDFGKYLCEVDVRPLE 111 (141)
T ss_dssp EEEEEEE--EETTC------EEEECTTCEEEEC-----------CEEEEEEEECTTC
T ss_pred EEEEEEE--ECCCC------eeeECCceEEeeccCcccceEcCCCCEEEEEEECCcc
Confidence 5888888 87542 4555555322 0 122478999999999975
No 21
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=42.00 E-value=47 Score=18.85 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=37.8
Q ss_pred EEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhh
Q psy1332 23 RVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 23 rl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
-+.|+ +++.....+.+.|.++-. +..=..-.|.+.+.+.+-.....++++++.+.
T Consensus 5 ~v~v~--~~~~~~~~~~~~l~~~pe-V~~~~~vtG~~d~l~~v~~~d~~~l~~~~~~~ 59 (83)
T 2zbc_A 5 IVLIN--TDAGGEDEVFERLKSMSE-VTEVHVVYGVYDIVVKVEADSMDKLKDFVTNT 59 (83)
T ss_dssp EEEEE--ESTTCHHHHHHHHTTCTT-EEEEEECSSSCSEEEEEECSSHHHHHHHHHHT
T ss_pred EEEEE--EcCCCHHHHHHHHhCCCC-eEEEEEEeccCCEEEEEEECCHHHHHHHHHHH
Confidence 34555 666666777777777653 33222237788899999999999999998743
No 22
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=40.15 E-value=14 Score=25.08 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=26.6
Q ss_pred eeEEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCC
Q psy1332 21 QMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGK 69 (103)
Q Consensus 21 ~Mrl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~ 69 (103)
.|.|+++ +.+.- .|..++.+-..++ .+|.+.+.+.|.|+-
T Consensus 63 ~mhV~~~--F~~~S------~v~alg~t~l~~~-~~G~~~a~vvV~P~e 102 (136)
T 2fe0_A 63 EMHVLVT--FNEDC------DIKALGKTKLEQQ-ENGEWVASVVVYPCE 102 (136)
T ss_dssp EEEEEEE--EESSC------CEEECTTCEEEEC-TTSEEEEEEEECTTC
T ss_pred EEEEEEE--ECCCC------ceEECCceEEEEC-CCCCEEEEEEECCcc
Confidence 5888888 76542 4555554322222 488999999999974
No 23
>3oq2_A Crispr-associated protein CAS2; ferredoxin fold, immune system; HET: TRS CIT; 1.35A {Desulfovibrio vulgaris}
Probab=33.84 E-value=87 Score=19.55 Aligned_cols=67 Identities=13% Similarity=0.290 Sum_probs=45.0
Q ss_pred eEEEEEEeeCcc------hHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhcC-CceEEEEEEeee
Q psy1332 22 MRVRVEVSAGVK------DVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTETR-GQGTLELLNLKE 94 (103)
Q Consensus 22 Mrl~v~~~ip~~------~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~tk-G~g~vevl~~~~ 94 (103)
|.+=|+-.+|.+ -..++...+++++.-+ ..+- ..|.+.|..+..+...+.+... ...+|-+..+..
T Consensus 8 M~vlV~YDI~~~t~~g~kr~~kv~k~l~~yG~rv-----Q~SV--Fe~~lt~~~~~~L~~~L~~~id~~~Dsv~iy~l~~ 80 (103)
T 3oq2_A 8 MLVLISYDVSFEDPGGQRRLRRIAKACQDYGQRV-----QYSV--FECVVDPAQWAKLKHRLLSEMDKEKDCLRFYYLGA 80 (103)
T ss_dssp EEEEEEEECCTTSHHHHHHHHHHHHHHGGGEEEE-----ETTE--EEEEECHHHHHHHHHHHHHHSCTTTCEEEEEEEET
T ss_pred EEEEEEEECCCCCchhHHHHHHHHHHHHHhCccc-----eEEE--EEEEcCHHHHHHHHHHHHHhcCCCCCEEEEEEeCc
Confidence 777777556652 3445666666666322 2333 4557899999999999999885 468888887764
Q ss_pred e
Q psy1332 95 V 95 (103)
Q Consensus 95 ~ 95 (103)
.
T Consensus 81 ~ 81 (103)
T 3oq2_A 81 N 81 (103)
T ss_dssp T
T ss_pred c
Confidence 3
No 24
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=32.01 E-value=45 Score=19.30 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEEEEEeCCCChHHHHHHHhhh
Q psy1332 59 LLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 59 ~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
-.+.+.|+|.....+.+++++.
T Consensus 39 ~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 39 QPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CCEEEEECGGGHHHHHHHHHHT
T ss_pred CcEEEEECHHHHHHHHHHHHHC
Confidence 3678999999999999999875
No 25
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=28.28 E-value=88 Score=17.85 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=20.4
Q ss_pred HHhhcccceeeeeeCCeEEEEEEeCCCCh
Q psy1332 42 LVKCATSVENEEWSGGGLLLICLIDPGKY 70 (103)
Q Consensus 42 l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~ 70 (103)
..+++-.-.+-.|+++...+....+.|+.
T Consensus 27 faelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 27 FAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 33444434567898888888888888864
No 26
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=26.84 E-value=10 Score=28.10 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=14.0
Q ss_pred CCeEEEEEEeCCCChH
Q psy1332 56 GGGLLLICLIDPGKYR 71 (103)
Q Consensus 56 ~~~~~~v~~I~Pg~~r 71 (103)
+|.|++++..+||.|.
T Consensus 205 ~g~~~~~~~L~~G~y~ 220 (294)
T 3nme_A 205 TGFWILKRELPEGQFE 220 (294)
T ss_dssp TCEEEEEEEECSEEEE
T ss_pred CCEEEEEEECCCceEE
Confidence 7899999999999764
No 27
>2ivy_A Hypothetical protein SSO1404; structural genomics, unknown function, CAS, RNAI, crispr; 1.4A {Sulfolobus solfataricus} SCOP: d.58.58.1 PDB: 2i8e_A
Probab=24.04 E-value=1.3e+02 Score=18.56 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=45.5
Q ss_pred eEEEEEEeeC-cchHHHHHHHHHhhc-ccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhhc-------CCceEEEEEEe
Q psy1332 22 MRVRVEVSAG-VKDVKKLKEKLVKCA-TSVENEEWSGGGLLLICLIDPGKYREIDELVRTET-------RGQGTLELLNL 92 (103)
Q Consensus 22 Mrl~v~~~ip-~~~~~~~~~~l~~~~-~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~t-------kG~g~vevl~~ 92 (103)
|.+=|.-.+| .+-..++...|.++| .-+. .+- ..|.+.|..+..+...+.+.. ...++|-++.+
T Consensus 3 M~~lV~YDI~~~kr~~kv~k~L~~yGl~rvQ-----~SV--Fe~~lt~~~~~~l~~~L~~~i~~~~~~d~~~Dsv~iy~l 75 (101)
T 2ivy_A 3 MLYLIFYDITDDNLRNRVAEFLKKKGLDRIQ-----YSV--FMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPI 75 (101)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHTTCEEEE-----TTE--EEEEECHHHHHHHHHHHHHHTCSCCCSTTCCEEEEEEEE
T ss_pred EEEEEEEeCCChHHHHHHHHHHHHhCChhcc-----ccE--EEEEcCHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEEEe
Confidence 5555554466 334556777777777 3222 222 445679999999999999888 45789988887
Q ss_pred eee
Q psy1332 93 KEV 95 (103)
Q Consensus 93 ~~~ 95 (103)
...
T Consensus 76 ~~~ 78 (101)
T 2ivy_A 76 TEN 78 (101)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 28
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=22.99 E-value=1.2e+02 Score=17.41 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=36.7
Q ss_pred EEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhhh
Q psy1332 24 VRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 24 l~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
+.|+ +++.....+.+.|.++-. |..=-.-.|.+.+.+.+-.....++++++.+.
T Consensus 6 v~v~--~~~~~~~~~~~~l~~~pe-V~e~~~vtG~~D~ll~v~~~d~~~l~~~i~~~ 59 (83)
T 2cvi_A 6 ILMV--TAAGKEREVMEKLLAMPE-VKEAYVVYGEYDLIVKVETDTLKDLDQFITEK 59 (83)
T ss_dssp EEEE--ECTTCHHHHHHHHHTSTT-EEEEEECBSSCSEEEEEEESSHHHHHHHHHTT
T ss_pred EEEE--EcCCCHHHHHHHHhCCCC-eeEEEEEcccCCEEEEEEECCHHHHHHHHHHH
Confidence 4455 666566777788877764 33221136778888888888899999998743
No 29
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=22.71 E-value=1.2e+02 Score=17.38 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.2
Q ss_pred EEEEEEeCCCChHHHHHHHhhh
Q psy1332 59 LLLICLIDPGKYREIDELVRTE 80 (103)
Q Consensus 59 ~~~v~~I~Pg~~r~i~~lv~~~ 80 (103)
-.+.+.|+|..+..+.+++++.
T Consensus 47 ~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 47 QPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp CCEEEEECTTSHHHHHHHHHHH
T ss_pred CeEEEEECHHHHHHHHHHHHHC
Confidence 4578999999999999999865
No 30
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=21.94 E-value=1.5e+02 Score=18.33 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=37.8
Q ss_pred EEEEEEeeCcchHHHHHHHHHhhcccceeeeeeCCeEEEEEEeCCCChHHHHHHHhh
Q psy1332 23 RVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLLLICLIDPGKYREIDELVRT 79 (103)
Q Consensus 23 rl~v~~~ip~~~~~~~~~~l~~~~~~ie~e~~~~~~~~~v~~I~Pg~~r~i~~lv~~ 79 (103)
-+.++ +++.....+.+.|..+.. +..--...|.+.+.+.+-.....++++++.+
T Consensus 67 ~v~~~--~~~~~~~~~~~~l~~~~~-v~~~~~~~G~~d~~~~v~~~d~~~l~~~~~~ 120 (141)
T 1i1g_A 67 ITGVD--TKPEKLFEVAEKLKEYDF-VKELYLSSGDHMIMAVIWAKDGEDLAEIISN 120 (141)
T ss_dssp EEEEE--ECGGGHHHHHHHHHHSTT-EEEECCCSSSSSEEEEEEESSHHHHHHHHHH
T ss_pred EEEEE--ECchhHHHHHHHHhcCCC-eEEEEEecCCCCEEEEEEECCHHHHHHHHHH
Confidence 44455 777777888888888774 3221113567778888888889999999844
Done!