Your job contains 1 sequence.
>psy1332
MYYYSQVIPTLKQCMSIERAQMRVRVEVSAGVKDVKKLKEKLVKCATSVENEEWSGGGLL
LICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1332
(103 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0035714 - symbol:CG8549 species:7227 "Drosophila m... 210 4.1e-17 1
UNIPROTKB|Q5ZIY4 - symbol:SBDS "Ribosome maturation prote... 198 7.7e-16 1
UNIPROTKB|E2R2W6 - symbol:SBDS "Uncharacterized protein" ... 192 3.3e-15 1
UNIPROTKB|Q9Y3A5 - symbol:SBDS "Ribosome maturation prote... 192 3.3e-15 1
UNIPROTKB|F1RJJ3 - symbol:SBDS "Uncharacterized protein" ... 192 3.3e-15 1
UNIPROTKB|Q5RAZ2 - symbol:SBDS "Ribosome maturation prote... 192 3.3e-15 1
UNIPROTKB|A5D8M6 - symbol:sbds "Ribosome maturation prote... 190 5.4e-15 1
UNIPROTKB|Q6DIT8 - symbol:sbds "Ribosome maturation prote... 190 5.4e-15 1
WB|WBGene00021063 - symbol:sbds-1 species:6239 "Caenorhab... 189 6.9e-15 1
UNIPROTKB|Q23202 - symbol:sbds-1 "Ribosome maturation pro... 189 6.9e-15 1
UNIPROTKB|Q3SWZ6 - symbol:SBDS "Ribosome maturation prote... 186 1.4e-14 1
MGI|MGI:1913961 - symbol:Sbds "Shwachman-Bodian-Diamond s... 186 1.4e-14 1
RGD|1311043 - symbol:Sbds "Shwachman-Bodian-Diamond syndr... 186 1.4e-14 1
DICTYBASE|DDB_G0272324 - symbol:sbds "Shwachman-Bodian-Di... 185 1.8e-14 1
UNIPROTKB|B5XEK1 - symbol:SBDS "Ribosome maturation prote... 185 1.8e-14 1
ZFIN|ZDB-GENE-040426-1116 - symbol:sbds "Shwachman-Bodian... 181 4.9e-14 1
UNIPROTKB|F1M0V8 - symbol:F1M0V8 "Uncharacterized protein... 154 3.5e-11 1
UNIPROTKB|A8HPN6 - symbol:CHLREDRAFT_102075 "Predicted pr... 115 1.2e-06 1
POMBASE|SPAC4F8.03 - symbol:sdo1 "SBDS family ribosome ma... 100 6.2e-05 1
UNIPROTKB|Q7RXW9 - symbol:NCU00476 "Putative uncharacteri... 78 0.00060 2
>FB|FBgn0035714 [details] [associations]
symbol:CG8549 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0006364
"rRNA processing" evidence=IBA] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0003723 "RNA binding"
evidence=IBA] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:AY094666 ProteinModelPortal:Q8SXD6 SMR:Q8SXD6
STRING:Q8SXD6 PRIDE:Q8SXD6 FlyBase:FBgn0035714 InParanoid:Q8SXD6
OrthoDB:EOG4SF7NV ArrayExpress:Q8SXD6 Bgee:Q8SXD6 Uniprot:Q8SXD6
Length = 252
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 48/96 (50%), Positives = 59/96 (61%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 65
+ I LK M IER++M++RV AG A +VE+EEW L L LI
Sbjct: 157 EAIKILKDHMPIERSRMKLRVSF-AGKEGGGKLKESVVKLANAVEHEEWDEATLHLTLLI 215
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEV 101
DPG+YR IDELVR ET+G+G LELL LKEV E EE+
Sbjct: 216 DPGQYRVIDELVRNETKGKGLLELLELKEVVESEEL 251
>UNIPROTKB|Q5ZIY4 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006364 "rRNA processing" evidence=IBA] [GO:0042273 "ribosomal
large subunit biogenesis" evidence=IBA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0008017
"microtubule binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030595 "leukocyte chemotaxis" evidence=IEA] [GO:0043148
"mitotic spindle stabilization" evidence=IEA] [GO:0048539 "bone
marrow development" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0042256 "mature ribosome assembly" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=ISS] [GO:0000922 "spindle
pole" evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0043022 GO:GO:0042273 GO:GO:0000922
GO:GO:0019843 GO:GO:0043148 GO:GO:0006364 GO:GO:0042256
GO:GO:0030595 CTD:51119 eggNOG:COG1500 GeneTree:ENSGT00390000008135
HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK
OrthoDB:EOG40ZQZH InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:AJ720650 IPI:IPI00576219
RefSeq:NP_001006211.1 RefSeq:XP_003642436.1 UniGene:Gga.2272
ProteinModelPortal:Q5ZIY4 STRING:Q5ZIY4 PRIDE:Q5ZIY4
Ensembl:ENSGALT00000001658 GeneID:100858362 GeneID:417477
KEGG:gga:100858362 KEGG:gga:417477 InParanoid:Q5ZIY4
NextBio:20820767 Uniprot:Q5ZIY4
Length = 250
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 47/100 (47%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V G +ENE++ L ++C
Sbjct: 156 EVIRQLKETMQIERAHMRLRFILPVKEGKKLKEKLKPLIKV----IENEDFHDQ-LEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL+R+ET+G+GTLE+L+LK+V EG+E LE
Sbjct: 211 LIDPGCFREIDELIRSETKGKGTLEVLSLKDVEEGDEKLE 250
>UNIPROTKB|E2R2W6 [details] [associations]
symbol:SBDS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048539 "bone marrow development"
evidence=IEA] [GO:0043148 "mitotic spindle stabilization"
evidence=IEA] [GO:0043022 "ribosome binding" evidence=IEA]
[GO:0042256 "mature ribosome assembly" evidence=IEA] [GO:0030595
"leukocyte chemotaxis" evidence=IEA] [GO:0030282 "bone
mineralization" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008017 "microtubule binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0001833
"inner cell mass cell proliferation" evidence=IEA] [GO:0000922
"spindle pole" evidence=IEA] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005730 GO:GO:0043022 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0001833 GO:GO:0042256 GO:GO:0030595 GO:GO:0048539
GeneTree:ENSGT00390000008135 OMA:IERAKMK InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
EMBL:AAEX03004194 Ensembl:ENSCAFT00000017228 Uniprot:E2R2W6
Length = 252
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G +E+E++ G L ++C
Sbjct: 158 EVIKQLKEKMQIERAHMRLRFLLPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVC 212
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 213 LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 252
>UNIPROTKB|Q9Y3A5 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9606
"Homo sapiens" [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0042273
"ribosomal large subunit biogenesis" evidence=IBA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0000922 "spindle pole"
evidence=IDA] [GO:0008017 "microtubule binding" evidence=IDA]
[GO:0048539 "bone marrow development" evidence=IMP] [GO:0030595
"leukocyte chemotaxis" evidence=IDA] [GO:0019843 "rRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043148 "mitotic spindle stabilization" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0042256 "mature ribosome assembly"
evidence=IDA] [GO:0043022 "ribosome binding" evidence=IDA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0043022 GO:GO:0042273
GO:GO:0008017 GO:GO:0000922 GO:GO:0030282 GO:GO:0019843
GO:GO:0043148 GO:GO:0006364 EMBL:CH471140 GO:GO:0001833
GO:GO:0042256 GO:GO:0030595 GO:GO:0048539 Orphanet:88 CTD:51119
eggNOG:COG1500 HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574
OrthoDB:EOG40ZQZH InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:AY169963 EMBL:AF151855
EMBL:AK001779 EMBL:AK289609 EMBL:BC065700 IPI:IPI00427330
RefSeq:NP_057122.2 UniGene:Hs.110445 PDB:2KDO PDB:2L9N PDBsum:2KDO
PDBsum:2L9N ProteinModelPortal:Q9Y3A5 SMR:Q9Y3A5 IntAct:Q9Y3A5
STRING:Q9Y3A5 PhosphoSite:Q9Y3A5 DMDM:28380824 PaxDb:Q9Y3A5
PeptideAtlas:Q9Y3A5 PRIDE:Q9Y3A5 DNASU:51119
Ensembl:ENST00000246868 GeneID:51119 KEGG:hsa:51119 UCSC:uc003tvm.1
GeneCards:GC07M066452 HGNC:HGNC:19440 HPA:HPA028891 MIM:260400
MIM:607444 neXtProt:NX_Q9Y3A5 Orphanet:811 PharmGKB:PA134978742
InParanoid:Q9Y3A5 OMA:DPYLARD PhylomeDB:Q9Y3A5 ChiTaRS:SBDS
EvolutionaryTrace:Q9Y3A5 GenomeRNAi:51119 NextBio:53897
ArrayExpress:Q9Y3A5 Bgee:Q9Y3A5 CleanEx:HS_SBDS
Genevestigator:Q9Y3A5 GermOnline:ENSG00000126524 Uniprot:Q9Y3A5
Length = 250
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G +E+E++ G L ++C
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 211 LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
>UNIPROTKB|F1RJJ3 [details] [associations]
symbol:SBDS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0001833 "inner cell mass cell proliferation"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0048539
"bone marrow development" evidence=IEA] [GO:0043148 "mitotic
spindle stabilization" evidence=IEA] [GO:0043022 "ribosome binding"
evidence=IEA] [GO:0042256 "mature ribosome assembly" evidence=IEA]
[GO:0030595 "leukocyte chemotaxis" evidence=IEA] [GO:0030282 "bone
mineralization" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008017 "microtubule binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005730
GO:GO:0043022 GO:GO:0000922 GO:GO:0030282 GO:GO:0019843
GO:GO:0043148 GO:GO:0006364 GO:GO:0001833 GO:GO:0042256
GO:GO:0030595 GO:GO:0048539 CTD:51119 GeneTree:ENSGT00390000008135
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 OMA:DPYLARD EMBL:FP236642 RefSeq:NP_001231322.1
UniGene:Ssc.15675 Ensembl:ENSSSCT00000008477 GeneID:100516003
KEGG:ssc:100516003 Uniprot:F1RJJ3
Length = 250
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G +E+E++ G L ++C
Sbjct: 156 EVIKQLKENMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 211 LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
>UNIPROTKB|Q5RAZ2 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9601
"Pongo abelii" [GO:0000922 "spindle pole" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008017
"microtubule binding" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0019843 "rRNA binding"
evidence=ISS] [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0042256
"mature ribosome assembly" evidence=ISS] [GO:0043022 "ribosome
binding" evidence=ISS] [GO:0043148 "mitotic spindle stabilization"
evidence=ISS] [GO:0048539 "bone marrow development" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737 GO:GO:0005654
GO:GO:0005730 GO:GO:0008283 GO:GO:0043022 GO:GO:0008017
GO:GO:0000922 GO:GO:0030282 GO:GO:0019843 GO:GO:0043148
GO:GO:0006364 GO:GO:0001833 GO:GO:0042256 GO:GO:0030595
GO:GO:0048539 CTD:51119 GeneTree:ENSGT00390000008135
HOVERGEN:HBG039762 KO:K14574 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 OMA:DPYLARD EMBL:CR858869
RefSeq:NP_001125618.1 UniGene:Pab.19145 ProteinModelPortal:Q5RAZ2
SMR:Q5RAZ2 PRIDE:Q5RAZ2 Ensembl:ENSPPYT00000020402 GeneID:100172536
KEGG:pon:100172536 InParanoid:Q5RAZ2 Uniprot:Q5RAZ2
Length = 250
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G +E+E++ G L ++C
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+LNLK+V EG+E E
Sbjct: 211 LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
>UNIPROTKB|A5D8M6 [details] [associations]
symbol:sbds "Ribosome maturation protein SBDS" species:8355
"Xenopus laevis" [GO:0000922 "spindle pole" evidence=ISS]
[GO:0008283 "cell proliferation" evidence=ISS] [GO:0042256 "mature
ribosome assembly" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0008283 GO:GO:0043022
GO:GO:0000922 GO:GO:0042256 CTD:51119 HOVERGEN:HBG039762 KO:K14574
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:BC141736 RefSeq:NP_001092159.1
UniGene:Xl.46120 ProteinModelPortal:A5D8M6 PRIDE:A5D8M6
GeneID:100049749 KEGG:xla:100049749 Xenbase:XB-GENE-1003512
Uniprot:A5D8M6
Length = 250
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/97 (46%), Positives = 60/97 (61%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLID 66
VI LK+ M IERA MR+R V A +E+E + L ++CLID
Sbjct: 157 VIKQLKETMQIERAHMRLRFIVPA--KDGKKLKEKLKPLIKHIESENFDQE-LEIVCLID 213
Query: 67 PGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
PG +REIDEL+R ET+G+GTLE+L+LK+V EG+E E
Sbjct: 214 PGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEKFE 250
>UNIPROTKB|Q6DIT8 [details] [associations]
symbol:sbds "Ribosome maturation protein SBDS" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000922 "spindle pole"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0042256 "mature ribosome assembly"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] [GO:0043022 "ribosome binding" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0008283 GO:GO:0003723
GO:GO:0043022 GO:GO:0042273 GO:GO:0000922 GO:GO:0006364
GO:GO:0042256 CTD:51119 eggNOG:COG1500 GeneTree:ENSGT00390000008135
HOGENOM:HOG000216685 HOVERGEN:HBG039762 KO:K14574 OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:CR855635 EMBL:BC075447 RefSeq:NP_001004953.1
UniGene:Str.16646 ProteinModelPortal:Q6DIT8 STRING:Q6DIT8
PRIDE:Q6DIT8 Ensembl:ENSXETT00000022243 GeneID:448365
KEGG:xtr:448365 Xenbase:XB-GENE-1003506 InParanoid:Q6DIT8
Bgee:Q6DIT8 Uniprot:Q6DIT8
Length = 250
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 45/97 (46%), Positives = 59/97 (60%)
Query: 7 VIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLID 66
VI LK+ M IERA MR+R + A T EN + L ++CLID
Sbjct: 157 VIKQLKETMQIERAHMRLRFILPAKDGKKLKEKLKPLIKHTESENFDQE---LEIVCLID 213
Query: 67 PGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
PG +REIDEL+R ET+G+GTLE+L+LK+V EG+E E
Sbjct: 214 PGCFREIDELIRCETKGKGTLEVLSLKDVEEGDEKFE 250
>WB|WBGene00021063 [details] [associations]
symbol:sbds-1 species:6239 "Caenorhabditis elegans"
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IMP] InterPro:IPR018978
Pfam:PF09377 GO:GO:0005634 GO:GO:0008340 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0005819 GO:GO:0003723
GO:GO:0042273 GO:GO:0006364 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685 KO:K14574
OMA:IERAKMK InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:FO080477 RefSeq:NP_497226.2
ProteinModelPortal:Q23202 SMR:Q23202 STRING:Q23202 PaxDb:Q23202
EnsemblMetazoa:W06E11.4.1 EnsemblMetazoa:W06E11.4.2 GeneID:175218
KEGG:cel:CELE_W06E11.4 UCSC:W06E11.4 CTD:175218 WormBase:W06E11.4
InParanoid:Q23202 NextBio:887244 Uniprot:Q23202
Length = 253
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 8 IPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDP 67
IP L++ + IERA+M++RV + + VE ++W G L ++ LI+P
Sbjct: 160 IPKLRETLKIERAKMKIRVAIPTKEAKSVHTKLKTLF--SDVEVDDWQDGSLEMVGLIEP 217
Query: 68 GKYREIDELVRTETRGQGTLELLNLKEVTEGE 99
G +R +D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 218 GSFRALDDLVRNETKGHGRLEILSLKDVVEGE 249
>UNIPROTKB|Q23202 [details] [associations]
symbol:sbds-1 "Ribosome maturation protein SBDS"
species:6239 "Caenorhabditis elegans" [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0006364 "rRNA processing"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0003723 "RNA binding" evidence=IBA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0008340
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0005819
GO:GO:0003723 GO:GO:0042273 GO:GO:0006364 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685 KO:K14574
OMA:IERAKMK InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:FO080477 RefSeq:NP_497226.2
ProteinModelPortal:Q23202 SMR:Q23202 STRING:Q23202 PaxDb:Q23202
EnsemblMetazoa:W06E11.4.1 EnsemblMetazoa:W06E11.4.2 GeneID:175218
KEGG:cel:CELE_W06E11.4 UCSC:W06E11.4 CTD:175218 WormBase:W06E11.4
InParanoid:Q23202 NextBio:887244 Uniprot:Q23202
Length = 253
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 8 IPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDP 67
IP L++ + IERA+M++RV + + VE ++W G L ++ LI+P
Sbjct: 160 IPKLRETLKIERAKMKIRVAIPTKEAKSVHTKLKTLF--SDVEVDDWQDGSLEMVGLIEP 217
Query: 68 GKYREIDELVRTETRGQGTLELLNLKEVTEGE 99
G +R +D+LVR ET+G G LE+L+LK+V EGE
Sbjct: 218 GSFRALDDLVRNETKGHGRLEILSLKDVVEGE 249
>UNIPROTKB|Q3SWZ6 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:9913
"Bos taurus" [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0043022 "ribosome binding" evidence=ISS] [GO:0042256 "mature
ribosome assembly" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0043148
"mitotic spindle stabilization" evidence=ISS] [GO:0048539 "bone
marrow development" evidence=ISS] [GO:0008017 "microtubule binding"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS] [GO:0000922
"spindle pole" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001833 "inner cell mass cell
proliferation" evidence=IEA] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0043022 GO:GO:0042273 GO:GO:0008017 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0001833 GO:GO:0042256 GO:GO:0030595 GO:GO:0048539
EMBL:BC104585 IPI:IPI00709555 RefSeq:NP_001029611.1
UniGene:Bt.12631 ProteinModelPortal:Q3SWZ6 STRING:Q3SWZ6
PRIDE:Q3SWZ6 Ensembl:ENSBTAT00000005296 GeneID:513237
KEGG:bta:513237 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 InParanoid:Q3SWZ6 KO:K14574 OMA:IERAKMK
OrthoDB:EOG40ZQZH NextBio:20870767 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
Uniprot:Q3SWZ6
Length = 250
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 43/100 (43%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G +E+E++ G L ++C
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKV----IESEDY-GQQLEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +RE+DEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 211 LIDPGCFREVDELIKKETKGKGSLEVLSLKDVEEGDEKFE 250
>MGI|MGI:1913961 [details] [associations]
symbol:Sbds "Shwachman-Bodian-Diamond syndrome homolog
(human)" species:10090 "Mus musculus" [GO:0000922 "spindle pole"
evidence=ISO] [GO:0001833 "inner cell mass cell proliferation"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO;IBA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=ISO;IBA] [GO:0008017 "microtubule binding" evidence=ISO]
[GO:0008283 "cell proliferation" evidence=ISO] [GO:0019843 "rRNA
binding" evidence=ISO] [GO:0030282 "bone mineralization"
evidence=ISO] [GO:0030595 "leukocyte chemotaxis" evidence=ISO]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0042256 "mature
ribosome assembly" evidence=ISO] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=IBA] [GO:0043022 "ribosome binding"
evidence=ISO] [GO:0043148 "mitotic spindle stabilization"
evidence=ISO] [GO:0048539 "bone marrow development" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 MGI:MGI:1913961 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0003723
GO:GO:0043022 GO:GO:0042273 GO:GO:0000922 GO:GO:0030282
GO:GO:0019843 GO:GO:0043148 GO:GO:0006364 GO:GO:0001833
GO:GO:0042256 GO:GO:0030595 GO:GO:0048539 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:AK005079 EMBL:AK014648 EMBL:AK019228
EMBL:AK168847 EMBL:BC003849 EMBL:X99668 IPI:IPI00136151
RefSeq:NP_075737.1 UniGene:Mm.280484 ProteinModelPortal:P70122
SMR:P70122 STRING:P70122 PhosphoSite:P70122 PaxDb:P70122
PRIDE:P70122 Ensembl:ENSMUST00000026387 GeneID:66711 KEGG:mmu:66711
UCSC:uc008zuj.1 InParanoid:P70122 NextBio:322437 Bgee:P70122
CleanEx:MM_SBDS Genevestigator:P70122 GermOnline:ENSMUSG00000025337
Uniprot:P70122
Length = 250
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G VE+E++S L ++C
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLMKV----VESEDYSQQ-LEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 211 LIDPGCFREIDELIKKETKGRGSLEVLSLKDVEEGDEKFE 250
>RGD|1311043 [details] [associations]
symbol:Sbds "Shwachman-Bodian-Diamond syndrome" species:10116
"Rattus norvegicus" [GO:0000922 "spindle pole" evidence=ISO;ISS]
[GO:0001833 "inner cell mass cell proliferation" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IBA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;IBA]
[GO:0006364 "rRNA processing" evidence=ISO;IBA] [GO:0008017
"microtubule binding" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO;ISS] [GO:0019843 "rRNA binding" evidence=ISO]
[GO:0030282 "bone mineralization" evidence=ISO] [GO:0030595
"leukocyte chemotaxis" evidence=ISO] [GO:0042256 "mature ribosome
assembly" evidence=ISO;ISS] [GO:0042273 "ribosomal large subunit
biogenesis" evidence=IBA] [GO:0043022 "ribosome binding"
evidence=ISO;ISS] [GO:0043148 "mitotic spindle stabilization"
evidence=ISO] [GO:0048539 "bone marrow development" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 RGD:1311043 GO:GO:0005634
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0008283
GO:GO:0003723 GO:GO:0043022 GO:GO:0042273 GO:GO:0000922
GO:GO:0006364 GO:GO:0042256 CTD:51119 eggNOG:COG1500
GeneTree:ENSGT00390000008135 HOGENOM:HOG000216685
HOVERGEN:HBG039762 KO:K14574 OMA:IERAKMK OrthoDB:EOG40ZQZH
InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 EMBL:BC086335 IPI:IPI00371054 RefSeq:NP_001008290.1
UniGene:Rn.107123 ProteinModelPortal:Q5RK30 STRING:Q5RK30
PRIDE:Q5RK30 Ensembl:ENSRNOT00000001190 GeneID:288615
KEGG:rno:288615 InParanoid:Q5RK30 NextBio:628424
Genevestigator:Q5RK30 Uniprot:Q5RK30
Length = 250
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 45/100 (45%), Positives = 65/100 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI LK+ M IERA MR+R + V+ G VE+E++S L ++C
Sbjct: 156 EVIKQLKEKMKIERAHMRLRFLLPVNEGKKLKEKLKPLMKV----VESEDYSQQ-LEIVC 210
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDEL++ ET+G+G+LE+L+LK+V EG+E E
Sbjct: 211 LIDPGCFREIDELIKKETKGKGSLEVLSLKDVEEGDEKFE 250
>DICTYBASE|DDB_G0272324 [details] [associations]
symbol:sbds "Shwachman-Bodian-Diamond syndrome
protein" species:44689 "Dictyostelium discoideum" [GO:0031143
"pseudopodium" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0042273 "ribosomal large
subunit biogenesis" evidence=ISS;IBA] [GO:0030687 "preribosome,
large subunit precursor" evidence=ISS] [GO:0000054 "ribosomal
subunit export from nucleus" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0003723 "RNA binding" evidence=IBA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0005819 "spindle" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR018978
Pfam:PF09377 dictyBase:DDB_G0272324 GO:GO:0005634 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0005819 GenomeReviews:CM000151_GR
GO:GO:0003723 EMBL:AAFI02000008 GO:GO:0042273 GO:GO:0030687
GO:GO:0006364 GO:GO:0000054 eggNOG:COG1500 KO:K14574 OMA:IERAKMK
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
RefSeq:XP_645141.1 ProteinModelPortal:Q86KZ5 STRING:Q86KZ5
EnsemblProtists:DDB0233143 GeneID:8618311 KEGG:ddi:DDB_G0272324
ProtClustDB:CLSZ2729240 Uniprot:Q86KZ5
Length = 274
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 65
+VI + + I+RAQMR+ + + + +E E+ GGGL ++CL+
Sbjct: 156 EVIKQISSVIPIQRAQMRLNITIPT-KESKTLNRDKLMVLVSKIEEEDRDGGGLSIVCLV 214
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGE 99
DPG YR+IDEL++ ET+G+G ++++NL EGE
Sbjct: 215 DPGSYRKIDELIKQETKGKGFIDIINLAVAKEGE 248
>UNIPROTKB|B5XEK1 [details] [associations]
symbol:SBDS "Ribosome maturation protein SBDS" species:8030
"Salmo salar" [GO:0000922 "spindle pole" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006364 "rRNA processing" evidence=ISS] [GO:0008017
"microtubule binding" evidence=ISS] [GO:0019843 "rRNA binding"
evidence=ISS] [GO:0030282 "bone mineralization" evidence=ISS]
[GO:0030595 "leukocyte chemotaxis" evidence=ISS] [GO:0043148
"mitotic spindle stabilization" evidence=ISS] [GO:0048539 "bone
marrow development" evidence=ISS] InterPro:IPR018978 Pfam:PF09377
GO:GO:0005737 GO:GO:0005730 GO:GO:0008017 GO:GO:0000922
GO:GO:0030282 GO:GO:0019843 GO:GO:0043148 GO:GO:0006364
GO:GO:0030595 GO:GO:0048539 HOVERGEN:HBG039762 InterPro:IPR018023
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 PROSITE:PS01267
EMBL:BT049470 EMBL:BT057084 Uniprot:B5XEK1
Length = 250
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 42/98 (42%), Positives = 64/98 (65%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLI 65
+VI LK+ + I+RA MR+R+ + A VE+E++ L ++CL+
Sbjct: 156 EVIRQLKESIEIQRAHMRLRLVLPA--KDGKRLKEKLKPLLKVVESEDFDDQ-LEMVCLV 212
Query: 66 DPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
DPG +REIDEL+R ET+G+G+LE+L+LK+V EG+E LE
Sbjct: 213 DPGCFREIDELIRCETKGKGSLEVLSLKDVEEGDERLE 250
>ZFIN|ZDB-GENE-040426-1116 [details] [associations]
symbol:sbds "Shwachman-Bodian-Diamond syndrome"
species:7955 "Danio rerio" [GO:0042254 "ribosome biogenesis"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0006364 "rRNA processing" evidence=IBA]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=IBA]
[GO:0003723 "RNA binding" evidence=IBA] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0016477 "cell migration" evidence=IMP]
[GO:0002573 "myeloid leukocyte differentiation" evidence=IMP]
InterPro:IPR018978 Pfam:PF09377 ZFIN:ZDB-GENE-040426-1116
GO:GO:0005634 GO:GO:0005737 GO:GO:0016477 GO:GO:0003723
GO:GO:0042273 GO:GO:0006364 GO:GO:0031017 GO:GO:0002573
GeneTree:ENSGT00390000008135 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 EMBL:CU914374 IPI:IPI01024559
Ensembl:ENSDART00000149631 ArrayExpress:F8W5Q9 Bgee:F8W5Q9
Uniprot:F8W5Q9
Length = 257
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGG---GLLL- 61
+VI LK+ + I+RA MR+R + A A VENE++ L L
Sbjct: 156 EVIKQLKESIQIQRAHMRLRFVLPAKDGKRLKEKLKPLIKA--VENEDFDDQLEMELFLL 213
Query: 62 --ICLIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
+CLIDPG +R+IDEL+R ET+G+GTLE+L+LK+V EG+E LE
Sbjct: 214 FQVCLIDPGCFRDIDELIRCETKGKGTLEVLSLKDVEEGDEKLE 257
>UNIPROTKB|F1M0V8 [details] [associations]
symbol:F1M0V8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0042254
GeneTree:ENSGT00390000008135 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 IPI:IPI00559908
Ensembl:ENSRNOT00000012098 Uniprot:F1M0V8
Length = 235
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 39/100 (39%), Positives = 61/100 (61%)
Query: 6 QVIPTLKQCMSIERAQMRVR--VEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLIC 63
+VI +K+ M IE+A M + + V+ G VE+E+++ L +IC
Sbjct: 140 EVIKQVKEKMKIEQAHMHLHFILPVNEGKNLKDNLKPLKKVV---VESEDYNRQ-LEIIC 195
Query: 64 LIDPGKYREIDELVRTETRGQGTLELLNLKEVTEGEEVLE 103
LIDPG +REIDE+V+ ET+ +G L +L+LK+V EG+E +E
Sbjct: 196 LIDPGYFREIDEMVKKETKSKGILVVLSLKDVEEGDEKVE 235
>UNIPROTKB|A8HPN6 [details] [associations]
symbol:CHLREDRAFT_102075 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=ISS]
InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634 GO:GO:0005737
GO:GO:0003723 GO:GO:0042273 GO:GO:0006364 EMBL:DS496108
eggNOG:COG1500 KO:K14574 InterPro:IPR018023 InterPro:IPR019783
InterPro:IPR002140 PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895
TIGRFAMs:TIGR00291 PROSITE:PS01267 RefSeq:XP_001689481.1
STRING:A8HPN6 EnsemblPlants:EDP09219 GeneID:5715144
KEGG:cre:CHLREDRAFT_102075 ProtClustDB:CLSN2688443 Uniprot:A8HPN6
Length = 239
Score = 115 (45.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 27/94 (28%), Positives = 51/94 (54%)
Query: 6 QVIPTLKQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGL-LLICL 64
+ +P L++ IERA+MR+R+ V A V + + GG+ +++
Sbjct: 148 EALPLLQKEFPIERARMRLRLTVPVEAQQELEQLLQRE--AADVAGLDVAAGGMCVVVAQ 205
Query: 65 IDPGKYREIDELVRTETRGQGTLELLNLKEVTEG 98
++PG +R+++ ++T RG G LE+L+L + EG
Sbjct: 206 VEPGVFRDLNNFMQTTARGAGRLEVLSLAVMAEG 239
>POMBASE|SPAC4F8.03 [details] [associations]
symbol:sdo1 "SBDS family ribosome maturation protein Sdo1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000054
"ribosomal subunit export from nucleus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030687 "preribosome, large subunit precursor" evidence=ISO]
[GO:0042273 "ribosomal large subunit biogenesis" evidence=ISO]
InterPro:IPR018978 Pfam:PF09377 PomBase:SPAC4F8.03 GO:GO:0005829
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0042273
GO:GO:0030687 GO:GO:0000054 eggNOG:COG1500 HOGENOM:HOG000216685
KO:K14574 InterPro:IPR018023 InterPro:IPR019783 InterPro:IPR002140
PANTHER:PTHR10927 Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291
PROSITE:PS01267 PIR:T38833 RefSeq:NP_593869.1
ProteinModelPortal:O14179 STRING:O14179 PRIDE:O14179
EnsemblFungi:SPAC4F8.03.1 GeneID:2543459 KEGG:spo:SPAC4F8.03
OMA:NQPSNQI OrthoDB:EOG42VCRJ NextBio:20804471 Uniprot:O14179
Length = 246
Score = 100 (40.3 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 12 KQCMSIERAQMRVRVEVSAGXXXXXXXXXXXXXCATSVENEEWSGGGLLLICLIDPGKYR 71
K + I RA+MR+R+ V A +E EE I L+ PG Y+
Sbjct: 164 KNEIPIVRARMRIRIVVDV--KQGKALRERLRSLADEIE-EENIDDEYECIALVIPGNYK 220
Query: 72 EIDELVRTETRGQGTLELLNLKE 94
IDELVR ET+ +G +++L++ E
Sbjct: 221 LIDELVRNETKNRGMVQVLDMSE 243
>UNIPROTKB|Q7RXW9 [details] [associations]
symbol:NCU00476 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0042273 "ribosomal large subunit biogenesis"
evidence=ISS] InterPro:IPR018978 Pfam:PF09377 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0042273 GO:GO:0006364
EMBL:AABX02000001 eggNOG:COG1500 HOGENOM:HOG000216685 KO:K14574
InterPro:IPR019783 InterPro:IPR002140 PANTHER:PTHR10927
Pfam:PF01172 SUPFAM:SSF89895 TIGRFAMs:TIGR00291 OrthoDB:EOG42VCRJ
RefSeq:XP_956795.1 ProteinModelPortal:Q7RXW9 STRING:Q7RXW9
EnsemblFungi:EFNCRT00000000146 GeneID:3872942 KEGG:ncr:NCU00476
Uniprot:Q7RXW9
Length = 315
Score = 78 (32.5 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 49 VENEEWSGGGLLLICLIDPGKYREIDELVRTETRGQGTLELLNL 92
VE+++ G L+ ++PG ++ + + + +ET+GQG +E+L++
Sbjct: 266 VESQDVMGQEWELVGFVEPGAFKILSDFIGSETKGQGRVEVLDM 309
Score = 33 (16.7 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 13 QCMSIERAQMRVRV 26
Q + + RA+MR+R+
Sbjct: 209 QPIPVARARMRLRI 222
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.135 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 90 0.00091 102 3 11 22 0.38 30
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 525 (56 KB)
Total size of DFA: 103 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 7.58u 0.07s 7.65t Elapsed: 00:00:09
Total cpu time: 7.58u 0.07s 7.65t Elapsed: 00:00:13
Start: Thu Aug 15 12:04:26 2013 End: Thu Aug 15 12:04:39 2013