RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1332
         (103 letters)



>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
          N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 246

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 54 WSGGGLLLICLI 65
          W+ G LL ICLI
Sbjct: 17 WNFGSLLGICLI 28


>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
          N-terminal domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 261

 Score = 26.3 bits (58), Expect = 0.79
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 54 WSGGGLLLICLI 65
          W+ G LL +CL+
Sbjct: 30 WNMGSLLGLCLV 41


>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
           isomerase, PRAI {Escherichia coli [TaxId: 562]}
          Length = 198

 Score = 26.0 bits (56), Expect = 0.84
 Identities = 6/15 (40%), Positives = 8/15 (53%)

Query: 26  VEVSAGVKDVKKLKE 40
           VE   G+KD + L  
Sbjct: 176 VESQPGIKDARLLAS 190


>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f
          complex {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 212

 Score = 25.3 bits (55), Expect = 1.5
 Identities = 3/12 (25%), Positives = 6/12 (50%)

Query: 54 WSGGGLLLICLI 65
          +  GG+   C +
Sbjct: 31 YCIGGITFTCFL 42


>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
           PRAI {Thermotoga maritima [TaxId: 2336]}
          Length = 205

 Score = 24.9 bits (53), Expect = 1.9
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)

Query: 26  VEVSAGVKDVKKLKEKLVKCATSV 49
           VE   G KD   +K   +K A  +
Sbjct: 183 VEAFPGKKDHDSIKM-FIKNAKGL 205


>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase,
           PRAI {Thermus thermophilus [TaxId: 274]}
          Length = 200

 Score = 24.8 bits (53), Expect = 2.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 26  VEVSAGVKDVKKLKE 40
           VE + GVK  +KL+ 
Sbjct: 177 VEEAPGVKSAEKLRA 191


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 25.0 bits (53), Expect = 2.5
 Identities = 9/30 (30%), Positives = 12/30 (40%)

Query: 60  LLICLIDPGKYREIDELVRTETRGQGTLEL 89
           L    ID    ++ D+ V  E  G G   L
Sbjct: 85  LPTFAIDDEGNQDPDDAVGVEDLGGGLTRL 114


>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 238

 Score = 24.3 bits (52), Expect = 3.3
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 15  MSIERAQMRVRVEVSAGVKDVKKLKEKLVKCA 46
             +   Q    +   A   +   +++ LV+ A
Sbjct: 199 FHLRIGQGLHWLPFPAACGNPGAVRQALVQLA 230


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 382,671
Number of extensions: 15746
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 12
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)