Query psy13321
Match_columns 144
No_of_seqs 144 out of 446
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 16:31:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gu2a1 c.56.5.7 (A:4-310) Asp 35.0 15 0.0011 28.0 3.6 44 8-51 84-129 (307)
2 d2c1ca1 c.56.5.1 (A:7-309) Car 30.2 19 0.0014 27.0 3.4 29 6-38 168-196 (312)
3 d1m65a_ c.6.3.1 (A:) Hypotheti 29.9 6.9 0.0005 26.3 0.7 12 30-41 1-12 (244)
4 d1bnda_ g.17.1.3 (A:) Brain-de 29.5 8.7 0.00063 25.3 1.1 35 73-108 16-50 (109)
5 d1bndb_ g.17.1.3 (B:) Neurotro 29.0 19 0.0014 23.6 2.8 34 74-108 16-49 (108)
6 d1aoza2 b.6.1.3 (A:130-338) As 28.5 18 0.0013 25.0 2.8 25 99-126 71-95 (209)
7 d1obra_ c.56.5.2 (A:) Carboxyp 26.3 22 0.0016 26.5 3.1 34 6-39 175-208 (323)
8 d1hcfa_ g.17.1.3 (A:) Neurotro 23.4 22 0.0016 23.9 2.3 32 73-104 25-57 (127)
9 d1jqga1 c.56.5.1 (A:1-310) Car 23.3 26 0.0019 26.2 3.0 29 6-38 172-200 (317)
10 d1m4la_ c.56.5.1 (A:) Carboxyp 21.0 29 0.0021 25.7 2.9 28 6-38 172-199 (307)
11 d1beta_ g.17.1.3 (A:) beta-Ner 20.7 15 0.0011 24.0 0.9 34 74-108 15-48 (107)
No 1
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.99 E-value=15 Score=27.96 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHhhhC-CCcceeEEEeeccccccCCcee-eecccC
Q psy13321 8 PGISTALTLITSLNQD-KNLELDFIIDLHAHSSLKGLFI-YGNSYD 51 (144)
Q Consensus 8 p~l~~~~~~~~~~~~~-~~~~l~f~~d~ha~S~~~g~fv-~gNv~p 51 (144)
.....++.|...+-.. .....|+.||+|+-++.+|.++ +++..+
T Consensus 84 ~E~~rA~eL~~~~g~~~~~~~~d~~iDLHsTTsnmg~~lI~~~~~d 129 (307)
T d2gu2a1 84 YEVRRAQEINHLFGPKNSDDAYDVVFDLHNTTSNMGCTLILGDSGN 129 (307)
T ss_dssp HHHHHHHHHHHHHCCTTSTTSCSEEEEEEECSSSCEEEEEESCTTC
T ss_pred HHHHHHHHHHHHhhhhcCCccccEEEEcccCCCCCCcEEEEcCCCC
Confidence 4566677777555321 2345799999998888888444 555543
No 2
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm (Helicoverpa zea) [TaxId: 7113]}
Probab=30.17 E-value=19 Score=26.96 Aligned_cols=29 Identities=3% Similarity=0.156 Sum_probs=22.4
Q ss_pred CCCchHHHHHHHHHhhhCCCcceeEEEeecccc
Q psy13321 6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHS 38 (144)
Q Consensus 6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S 38 (144)
.+|...|+++++.+... ++.++||+|+.+
T Consensus 168 SepEt~av~~~~~~~~~----~i~~~l~~Hs~g 196 (312)
T d2c1ca1 168 SEVETRVVRDILHEHLA----RMALYLTMHSFG 196 (312)
T ss_dssp CSHHHHHHHHHHHHHGG----GEEEEEEEEESS
T ss_pred cChHHHHHHHHHHhccc----ceeEEEEecCCC
Confidence 56788999999866533 699999999754
No 3
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}
Probab=29.88 E-value=6.9 Score=26.33 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=10.6
Q ss_pred EEEeeccccccC
Q psy13321 30 FIIDLHAHSSLK 41 (144)
Q Consensus 30 f~~d~ha~S~~~ 41 (144)
|.||+|.||..+
T Consensus 1 ~~iDlH~Ht~~S 12 (244)
T d1m65a_ 1 YPVDLHMHTVAS 12 (244)
T ss_dssp CCEECCBCCTTS
T ss_pred CCeeeecCCCCC
Confidence 469999999988
No 4
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.48 E-value=8.7 Score=25.34 Aligned_cols=35 Identities=6% Similarity=-0.041 Sum_probs=25.3
Q ss_pred CCceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEe
Q psy13321 73 GNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVID 108 (144)
Q Consensus 73 GNL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~ 108 (144)
+|-..+.-++.++.++.-..+.++..+.|+|| ..+
T Consensus 16 ~nk~ta~D~~G~~Vtvl~~v~~~~~~~kQyF~-ET~ 50 (109)
T d1bnda_ 16 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFY-ETK 50 (109)
T ss_dssp HHHCEEEBTTSCEEEECSEEECSSSEEECEEE-EEE
T ss_pred cCcceeEeCCCCEEEEEEEEccCCcEEEEEEE-EEE
Confidence 45555666677888888888887778899876 443
No 5
>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.98 E-value=19 Score=23.58 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=25.5
Q ss_pred CceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEe
Q psy13321 74 NLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVID 108 (144)
Q Consensus 74 NL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~ 108 (144)
|...+.-++.++..+.-.-+.++..+.|+|| .++
T Consensus 16 ~k~tA~Di~G~~VtVL~~v~~n~~~~kQyF~-ET~ 49 (108)
T d1bndb_ 16 DKSSAIDIRGHQVTVLGEIKTQNSPVKQYFY-ETR 49 (108)
T ss_dssp CCCEEEBTTSCEEEECSEECTTTSCEECCEE-EEE
T ss_pred cCcEEEcCCCCEEEEEEEEecCCcEEEEEEE-EEE
Confidence 4555666778888888888888888999875 444
No 6
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=28.48 E-value=18 Score=24.98 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=17.4
Q ss_pred eeeeEEEEEeccCCCeeEEEEEeccCcc
Q psy13321 99 HRLWFNFVIDNTRLDQRVILNIVNMGKT 126 (144)
Q Consensus 99 ~~qWFyF~V~~~~~~~~~~f~I~N~~k~ 126 (144)
...|..|.|+ +|.+|+|+|+|.+-.
T Consensus 71 ~~~~~~~~v~---~g~~~RlRliNa~~~ 95 (209)
T d1aoza2 71 SCAPYIFHVS---PKKTYRIRIASTTAL 95 (209)
T ss_dssp TTSCCCEEEC---TTCEEEEEEEECCSS
T ss_pred CCCceEEEEc---CCCEEEEEEEecCCc
Confidence 3445566665 567899999998843
No 7
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces vulgaris [TaxId: 2026]}
Probab=26.34 E-value=22 Score=26.49 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCchHHHHHHHHHhhhCCCcceeEEEeeccccc
Q psy13321 6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHSS 39 (144)
Q Consensus 6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S~ 39 (144)
-+|-..|++.++.+..-+...++.+++++|+.+.
T Consensus 175 SEPEt~a~~~~~~~~~~~~~~~~~~~i~~Hs~~~ 208 (323)
T d1obra_ 175 SAPETAAMRDFINSRVVGGKQQIKTLITFHTYSE 208 (323)
T ss_dssp CSHHHHHHHHHHHTTBCSSSBCEEEEEEEEESSS
T ss_pred chhHHHHHHHHHHHhccccccceeeEEEeccCCc
Confidence 4688899999997765566778999999997753
No 8
>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.39 E-value=22 Score=23.93 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=22.6
Q ss_pred CCceeeeeeCCeeEEEEecC-CCCCCCeeeeEE
Q psy13321 73 GNLGRVDFTSEFEYDLFIRP-DTCNPRHRLWFN 104 (144)
Q Consensus 73 GNL~~v~~~~~~ey~L~l~p-D~~t~~~~qWFy 104 (144)
+|...+.-+..++..+.-.. ..++..++|+||
T Consensus 25 ~nkttA~Di~G~eVtVL~ev~~~n~~~~kQyFf 57 (127)
T d1hcfa_ 25 TDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFF 57 (127)
T ss_dssp CCCCEEEBTTSCEEEECSEEECSSSSEEECCEE
T ss_pred ecCcEeEcCCCCEEEEeeeeecCCCcEEEEEEE
Confidence 35666666777887777665 556667999886
No 9
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm (Helicoverpa armigera) [TaxId: 29058]}
Probab=23.33 E-value=26 Score=26.23 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCCchHHHHHHHHHhhhCCCcceeEEEeecccc
Q psy13321 6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHS 38 (144)
Q Consensus 6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S 38 (144)
-+|...|+++++.+.. .++.+++|+|+.+
T Consensus 172 SEpEt~al~~~~~~~~----~~i~~~vd~Hs~g 200 (317)
T d1jqga1 172 SEPESSVIRDIIAEHR----NRMALYLDIHSFG 200 (317)
T ss_dssp CSHHHHHHHHHHHHTT----TTEEEEEEEEESS
T ss_pred ccHHHHHHHHHHHHhc----cceEEEEeeccCC
Confidence 4788889999986542 3689999999764
No 10
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.96 E-value=29 Score=25.65 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=20.6
Q ss_pred CCCchHHHHHHHHHhhhCCCcceeEEEeecccc
Q psy13321 6 GNPGISTALTLITSLNQDKNLELDFIIDLHAHS 38 (144)
Q Consensus 6 ~~p~l~~~~~~~~~~~~~~~~~l~f~~d~ha~S 38 (144)
-+|-..|+++++++. .+++++||+|+++
T Consensus 172 sePEtral~~~l~~~-----~~~~~~i~~Hs~~ 199 (307)
T d1m4la_ 172 SEVEVKSIVDFVKDH-----GNFKAFLSIHSYS 199 (307)
T ss_dssp CSHHHHHHHHHHHHH-----CCEEEEEEEEESS
T ss_pred chHHHHHHHHHHHhc-----cceeEEEEecCCC
Confidence 467778888887542 3589999999754
No 11
>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.65 E-value=15 Score=24.03 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=23.4
Q ss_pred CceeeeeeCCeeEEEEecCCCCCCCeeeeEEEEEe
Q psy13321 74 NLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVID 108 (144)
Q Consensus 74 NL~~v~~~~~~ey~L~l~pD~~t~~~~qWFyF~V~ 108 (144)
|-..+.-++.++..+.-..+.++..+.|+|| .+.
T Consensus 15 nk~tA~Di~G~~VtVL~~v~~n~~~~kQyF~-ET~ 48 (107)
T d1beta_ 15 DKTTATDIKGKEVTVLAEVNINNSVFRQYFF-ETK 48 (107)
T ss_dssp CCCEEEBTTSCEEEECSEEEETTEEEECCEE-EEE
T ss_pred cCcEeEcCCCCEEEEEEEEecCCcEEEEEEE-EEE
Confidence 4555666667777777777777777888775 444
Done!