RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13321
         (144 letters)



>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
           {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
          Length = 388

 Score = 69.0 bits (168), Expect = 7e-15
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
           +GN+  +D +      L IRPD    +H  WF+F ++           +VN G++     
Sbjct: 22  SGNIQVIDASDPRRIRLAIRPD-LASQHFQWFHFKVEGMAPATEHCFTLVNAGQSAYSHA 80

Query: 132 DGMTP 136
                
Sbjct: 81  WSGYQ 85



 Score = 32.8 bits (74), Expect = 0.031
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 24  KNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALPCKRWVAGNLGRVDFTSE 83
           K   +D  +D+H    +  +F  G   +  Y+ R     L    +R+    + R +F   
Sbjct: 262 KRHGVDLFLDIHGDEEIPHVFAAGCEGNPGYTPR-----LERLEQRFREELMARGEFQIR 316

Query: 84  FEYD 87
             Y 
Sbjct: 317 HGYP 320


>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
           structural genomics, joint CENT structural genomics,
           JCSG; 2.39A {Shewanella denitrificans}
          Length = 395

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKNLFR 131
            GN+  +   +  +  L IRPD        WFNF  + T   +   LNI+N G    L  
Sbjct: 28  GGNIETISLANPDDIQLAIRPD-AGGEFYQWFNFRFEATI-GKTYTLNILNAGGASYLKG 85

Query: 132 DGMTP 136
                
Sbjct: 86  WEDYQ 90



 Score = 27.4 bits (60), Expect = 2.0
 Identities = 9/38 (23%), Positives = 16/38 (42%)

Query: 20  LNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSR 57
           +N+     +D   D+H    L  +F+ G      YS +
Sbjct: 263 VNKMHETGVDLFYDVHGDEGLPYVFLAGCEGIPNYSDK 300


>3k2k_A Putative carboxypeptidase; structural genomics, joint center
           structural genomics, JCSG, protein structure initiative;
           2.49A {Burkholderia mallei atcc 23344}
          Length = 403

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 72  AGNLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTRLDQRVILNIVNMGKTKN 128
           AG +  V         L +R D        WF F +   R  +R ++   N      
Sbjct: 30  AGAIDVVSCERADAIRLRVRGDN-RSEFAQWFYFRLTGAR-GERCVMTFENANDCAY 84



 Score = 31.7 bits (71), Expect = 0.069
 Identities = 7/43 (16%), Positives = 15/43 (34%)

Query: 24  KNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLVSLALP 66
             +  D   D+H    L  +F  G+     ++ +  +   A  
Sbjct: 276 HAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFI 318


>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
           metallopeptidase containing CO-catalytic metalloactive
           site; 1.74A {Shewanella denitrificans OS217} PDB:
           3ieh_A*
          Length = 275

 Score = 25.9 bits (56), Expect = 5.9
 Identities = 6/56 (10%), Positives = 13/56 (23%)

Query: 3   PSKGNPGISTALTLITSLNQDKNLELDFIIDLHAHSSLKGLFIYGNSYDDIYSSRA 58
           P+           L+           D I+  H    +   ++Y           +
Sbjct: 138 PTPNEHTSLEGKLLLEHAQLLCAASRDGILTCHEDVLMNETYVYSFEPTQTPGRFS 193


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,187,340
Number of extensions: 119447
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 9
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)