RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13321
         (144 letters)



>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 307

 Score = 28.4 bits (63), Expect = 0.26
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 29  DFIIDLHAHSSLKGLF-IYGNSYDDIYSSRASLVSLALP 66
           D + DLH  +S  G   I G+S +D        +   + 
Sbjct: 106 DVVFDLHNTTSNMGCTLILGDSGNDFLIQMFHYIKTCMA 144


>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis
           familiaris) [TaxId: 9615]}
          Length = 249

 Score = 27.6 bits (61), Expect = 0.50
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 74  NLGRVDFTSEFEYDLFIRPDTCNPRHRLWFNFVIDNTR 111
            L    F  +  Y +   PD C   ++L F F   N +
Sbjct: 114 ELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPK 151


>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 346

 Score = 24.2 bits (52), Expect = 7.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 28 LDFIIDLHAHSSLKGLFIYGNSYDDIYSSRASLV 61
          LDF+ D H     + L +    Y  + +SR ++ 
Sbjct: 1  LDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIA 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 532,557
Number of extensions: 22978
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 7
Length of query: 144
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,350,386
Effective search space: 90475862
Effective search space used: 90475862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)