BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13322
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A+I E IQG GV FL+ EL +N L I DEVQTG GRTG+ Y + +GV+
Sbjct: 186 AVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 244
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
PD++T AK + GFP+GA++ T E A+V+T H T+GGNP+ +A VL++I E+
Sbjct: 245 PDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEM 304
Query: 178 QYNCKQ 183
KQ
Sbjct: 305 LNGVKQ 310
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A++ E IQG GV+ FL+ +L + L + DEVQ G GRTGD + + +GV+
Sbjct: 204 AVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGVT 262
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
PDI+T AK + GFP+ A++TT EIA +H +T+GGNP+ C +A D+I E+
Sbjct: 263 PDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEV 322
Query: 178 QYNCKQVSAQIIGYLRVV 195
Q + +L+ +
Sbjct: 323 LQGIHTKRQQFVQHLQAI 340
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 49 YNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY 108
Y + A +I E IQG GV E FL + E+ K + L I DEVQTG GRTG+ +
Sbjct: 166 YKLLDEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-F 224
Query: 109 WGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTV 168
+ ++ + PD++ +AKG+ G P+GA++ E+AQ T +H +TFGGNP+ C + V
Sbjct: 225 YAYQHFNLKPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVV 284
Query: 169 LDVIKDEELQYNCKQV 184
+D + E+L + ++V
Sbjct: 285 VDEV--EKLLPHVREV 298
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 99.8 bits (247), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 1/139 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E +QG GV+ FLR A E+ + L I DE+QTG GRTG + FE G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF-AFEHFGI 245
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AK + G P+G V E+A+ + K H TFGGNP+ + ++
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 177 LQYNCKQVSAQIIGYLRVV 195
L ++ + LR +
Sbjct: 306 LWERAAELGPWFMEKLRAI 324
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E IQG +G+ P FL+ A E+ K N LF++DE+QTG GRTG + + V
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTG-KVFACDWDNV 242
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
+PD+ + + G FP+ +I V +H +TFGGNP+ C ++ L+V+++E
Sbjct: 243 TPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEE 302
Query: 176 ELQYNCKQVSAQIIGYLRVV 195
+L Q+ +++G L+ +
Sbjct: 303 KLTERSLQLGEKLVGQLKEI 322
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RTG + + V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + HF+T+GGNP+GC +A L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
L N ++
Sbjct: 344 NLAENADKL 352
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 38 KFYEQLVNAFQY----NVP------ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
K +E LV F+Y NV A+ E IQG SG+ + FL A +L
Sbjct: 144 KPFEPLVPGFEYFEFNNVEDLRRKMSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 203
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ L + DEVQ G GRTG + ++ +GV PD++T AKG+ G P+GAV+ E A VL
Sbjct: 204 YDALLVFDEVQCGMGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVI-VNERANVLE 261
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
H TFGGNP+ C TV+ + E
Sbjct: 262 PGDHGTTFGGNPLACRAGVTVIKELTKE 289
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 38 KFYEQLVNAFQY----NVP------ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
K +E LV F+Y NV A+ E IQG SG+ + FL A +L
Sbjct: 156 KPFEPLVPGFEYFEFNNVEDLRRKXSEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDE 215
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ L + DEVQ G GRTG + ++ +GV PD++T AKG+ G P+GAV+ E A VL
Sbjct: 216 YDALLVFDEVQCGXGRTG-KLFAYQKYGVVPDVLTTAKGLGGGVPIGAVI-VNERANVLE 273
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
H TFGGNP+ C TV+ + E
Sbjct: 274 PGDHGTTFGGNPLACRAGVTVIKELTKE 301
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
CPL+ + + F+ + AA++ E +QG G F++R L
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGSGGFYASSPAFMQRLRALCDE 231
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ + I+DEVQ+G GRTG + E GV+PD+ T AK IA GFP+ V E+ +
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
T+ GNP+ CV A VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
CPL+ + + F+ + AA++ E +QG G F++R L
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ + I+DEVQ+G GRTG + E GV+PD+ T AK IA GFP+ V E+ +
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
T+ GNP+ CV A VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
CPL+ + + F+ + AA++ E +QG G F++R L
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ + I+DEVQ+G GRTG + E GV+PD+ T AK IA GFP+ V E+ +
Sbjct: 232 HGIMLIADEVQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
T+ GNP+ CV A VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
Y+ L A + + A I E IQG +GV +L+ Y++ K N LF++DEVQT
Sbjct: 198 YDDL-EALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT 256
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
G GRTG + V PD++ + K ++ G +P+ AV+ +I V+ H +T+GGN
Sbjct: 257 GLGRTG-KLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGN 315
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
P+ I L+V+ +E+L N +++ + L+
Sbjct: 316 PLAASICVEALNVLINEKLCENAEKLGGPFLENLK 350
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E I G+ P+ + + +E + + L ISDEV GFGRTG + GF + V
Sbjct: 217 AAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAF-GFXNYDV 275
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
PDI+T AKGI + + P+ A EI + H NTFGGNP C +A L
Sbjct: 276 KPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
++I++E L Q + ++ L+
Sbjct: 336 EIIENENLIERSAQXGSLLLEQLK 359
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
CPL+ + + F+ + AA++ E +QG G F++R L
Sbjct: 173 CPLHGISEDDAI-ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 231
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ + I+DE Q+G GRTG + E GV+PD+ T AK IA GFP+ V E+ +
Sbjct: 232 HGIMLIADEAQSGAGRTG-TLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVA 290
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
T+ GNP+ CV A VL V + E L
Sbjct: 291 PGGLGGTYAGNPIACVAALEVLKVFEQENL 320
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RTG + + V
Sbjct: 188 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 246
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + H +T+GGNP+GC +A L+V+++E
Sbjct: 247 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 306
Query: 176 ELQYNCKQV 184
L N ++
Sbjct: 307 NLAENADKL 315
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RTG + + V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + H +T+GGNP+GC +A L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
L N ++
Sbjct: 344 NLAENADKL 352
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RTG + + V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + H +T+GGNP+GC +A L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQV 184
L N ++
Sbjct: 344 NLAENADKL 352
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 1/152 (0%)
Query: 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
E+ +N + AA+I E I G G FL + N+ +FI+DEVQTG
Sbjct: 230 ERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTG 289
Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
F RTG + + V PD++ A GIA+GFP+ AV EI + TFGGNPV
Sbjct: 290 FARTG-AMFACDHENVEPDLIVTAXGIADGFPLSAVTGRAEIMDAPHTSGLGGTFGGNPV 348
Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192
C A ++ I+ + + +Q+ ++ L
Sbjct: 349 ACAAALATIETIERDGMVERARQIERLVMDRL 380
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E IQG G FL + + N+ +FI+DEVQTGF RTG + E G+
Sbjct: 229 AAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTG-AMFACEHEGI 287
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD++ A GIA G P+ AV EI + T+GGNP+ C A ++ I+ E
Sbjct: 288 DPDLIVTAXGIAGGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIESEG 347
Query: 177 LQYNCKQV 184
L +Q+
Sbjct: 348 LVARAQQI 355
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
Y+ L A + + A I E +QG +GV + L K N LF++DEVQT
Sbjct: 179 YDDL-EALEKELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQT 237
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
G GRTG +GV PD++ + K ++ G +P+ A++ ++ VL H +T+GGN
Sbjct: 238 GLGRTG-KLLCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGN 296
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
P+ I L V+ +E+L N ++ A + L+
Sbjct: 297 PLAAAICVEALKVLINEKLCENADKLGAPFLQNLK 331
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG G FL N +FI+DEVQTGF RTG ++ E G+
Sbjct: 227 AAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEGI 285
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDIVTMA GIA G P+ AV E+ + T+GGNPV C A L V+++ +
Sbjct: 286 VPDIVTMAXGIAGGMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELD 345
Query: 177 LQYNCKQVSAQIIGYLRVV 195
L + + A + L +
Sbjct: 346 LPARARAIEASVTSRLSAL 364
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 84/191 (43%), Gaps = 34/191 (17%)
Query: 31 NQCEASNKFYEQLVNAFQYN-VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN 89
N E N+ E + + N VP A + E IQG G P+ F +L K
Sbjct: 187 NPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYG 246
Query: 90 GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK 148
L + DEVQ G GRTG + E PD++T+AK + G P+GA + ++
Sbjct: 247 ILLVDDEVQMGLGRTG-KLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD--FKP 303
Query: 149 AAHFNTFGGNPVGCVIASTVLDVIKD-------------EELQ----------------Y 179
H NTFGGN + C I S V+D++KD EELQ Y
Sbjct: 304 GMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGLADDVRGIGLAWGLEY 363
Query: 180 NCKQVSAQIIG 190
N K+V +IIG
Sbjct: 364 NEKKVRDRIIG 374
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 19 PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
P+ + +CP + E +F +L + + GA A AE + G GV
Sbjct: 186 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGV 245
Query: 71 KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
+ + + +++ + ISDEV GFGRTG N WG + +PD + +K + G
Sbjct: 246 IPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAG 304
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
FPMGAV+ E+++ L A H T G+PVGC IA +DV+ +E L N +
Sbjct: 305 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 364
Query: 183 QVSAQIIGYLRVV 195
+++ + L+ +
Sbjct: 365 RLAPRFEERLKHI 377
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE +QG GV P + + + L I+DEV GFGRTG N++G + G+
Sbjct: 225 AAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGI 283
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
P I+T+AKG+++G+ P+G + E+A V+ K H T+ G+PV +A L +++
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343
Query: 174 DEELQYNCKQVSA 186
+E + + + V+A
Sbjct: 344 EENILDHVRNVAA 356
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG G FL E K +FI+DEVQ+GF RTG+ ++ + GV
Sbjct: 228 AAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEGV 286
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+TMAKGIA G P+ A+ ++ + T+GGNPV C A +D ++ +
Sbjct: 287 VPDIITMAKGIAGGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHD 346
Query: 177 LQYNCKQVSAQIIGYLR 193
L + + +G LR
Sbjct: 347 LNGRARHIEELALGKLR 363
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 19 PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
P+ + +CP + E +F +L + + GA A AE + G GV
Sbjct: 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGV 251
Query: 71 KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
+ + + +++ + ISDEV GFGRTG N WG + +PD + + + G
Sbjct: 252 IPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTG-NTWGCVTYDFTPDAIISSXNLTAG 310
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
FPMGAV+ E+++ L A H T G+PVGC IA +DV+ +E L N +
Sbjct: 311 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 370
Query: 183 QVSAQIIGYLRVV 195
+++ + L+ +
Sbjct: 371 RLAPRFEERLKHI 383
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 19 PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
P+ + +CP + E +F +L + + GA A AE + G GV
Sbjct: 192 PLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGAGGV 251
Query: 71 KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
+ + + +++ + ISDEV GFGRTG N WG + +PD + +K + G
Sbjct: 252 IPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDFTPDAIISSKNLTAG 310
Query: 131 -FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
FP GAV+ E+++ L A H T G+PVGC IA +DV+ +E L N +
Sbjct: 311 FFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAENVR 370
Query: 183 QVSAQIIGYLRVV 195
+++ + L+ +
Sbjct: 371 RLAPRFEERLKHI 383
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A+I ES+QG G+ + F + +L + L I+DE+Q G GR+G ++ +E +
Sbjct: 182 AIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSG-KFFAYEHAQIL 240
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI T AK + G +GA V ++A L H +T+GGNP+ C + V ++ K+E+
Sbjct: 241 PDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEK 300
Query: 177 LQYNCKQVS 185
+ N +++
Sbjct: 301 ILENVNKLT 309
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 17/193 (8%)
Query: 19 PIQTTRYCSCPL-----NQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVSGV 70
P+ + +CP + E +F +L + + GA A AE + G GV
Sbjct: 184 PLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDTITREGADTIAGFFAEPVMGAGGV 243
Query: 71 KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
+ + + +++ + ISDEV GFGRTG N WG + PD + + + G
Sbjct: 244 IPPAKGYFQAILPILRKYDIPMISDEVICGFGRTG-NTWGCLTYDFMPDAIISSXNLTAG 302
Query: 131 -FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
FPMGAV+ ++A+ + A H T G+PVGC IA +DV+ +E L N +
Sbjct: 303 FFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVR 362
Query: 183 QVSAQIIGYLRVV 195
+++ + L+ +
Sbjct: 363 RLAPRFEAGLKRI 375
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E + G G FL + N +F++DEVQTGF RTG + E V
Sbjct: 230 AAVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTG-ALFACEHENV 288
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD++ AKGIA G P+ AV EI T+GGNP+ C A V+D I+ E
Sbjct: 289 VPDLIVTAKGIAGGLPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIEREN 348
Query: 177 LQYNCKQVSAQIIGYL 192
L + + ++ L
Sbjct: 349 LVARARAIGETMLSRL 364
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+ E + G +GV P +L+R E+ +N L + DEV TGFGRTG + +G + GV
Sbjct: 221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGV 279
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVL---------TKAAHFNTFGGNPVGCVIAS 166
+PD++ +AK + NG PMGAV+ +TEI Q + H T+ +PV C
Sbjct: 280 TPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGL 339
Query: 167 TVLDVIKDEELQYNCKQVS 185
L +++ E L + +V+
Sbjct: 340 AALCLLQKENLVQSVAEVA 358
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 16/176 (9%)
Query: 25 YCSCPLNQCEASNK----FYEQLVNAFQYNVPITGA---AALIAESIQGVSGVKEFPRYF 77
+ S P N A N+ F + LV F+ + G AA +AE I GV P +
Sbjct: 185 FLSSP-NPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGY 243
Query: 78 LRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGF-PMGAV 136
R + + ++ L+ISDEV TGFGR G+ + ++ GV PDI+T AKG+ +G+ P+G +
Sbjct: 244 HARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGL 303
Query: 137 VTTTEIAQVLT----KAAHFN---TFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185
+ + ++ K + F T+ PV C A +++++ E + ++++
Sbjct: 304 AISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMA 359
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 8/146 (5%)
Query: 57 AALIAESIQGVS--GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA +AE + G S + P Y+ R ++ +FI+DEV +G GR G
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYY-ERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWS 250
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
GV+PDI + KG+A G+ P+ ++ ++ + + + H T+ G+PV +VL
Sbjct: 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310
Query: 170 DVIKDEELQYNCKQVSAQIIGYLRVV 195
D+++ E+L K+ AQ++ L+ +
Sbjct: 311 DIVEREDLTGAAKERGAQLLAGLQAL 336
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE I G+ E P ++ ++ L I DE QTG GRTG + + GV
Sbjct: 204 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 262
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
+PDI+T++K + G P+ A+VT+ I + + + + T +P+ + VLDV++
Sbjct: 263 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 322
Query: 175 EEL 177
+ L
Sbjct: 323 DGL 325
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE I G+ E P ++ ++ L I DE QTG GRTG + + GV
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 263
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
+PDI+T++K + G P+ A+VT+ I + + + + T +P+ + VLDV++
Sbjct: 264 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323
Query: 175 EEL 177
+ L
Sbjct: 324 DGL 326
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE I G+ E P ++ ++ L I DE QTG GRTG + + GV
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 263
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
+PDI+T++K + G P+ A+VT+ I + + + + T +P+ + VLDV++
Sbjct: 264 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 323
Query: 175 EEL 177
+ L
Sbjct: 324 DGL 326
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE I G+ E P ++ ++ L I DE QTG GRTG + + GV
Sbjct: 203 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFACQRDGV 261
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD 174
+PDI+T++K + G P+ A+VT+ I + + + + T +P+ + VLDV++
Sbjct: 262 TPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR 321
Query: 175 EEL 177
+ L
Sbjct: 322 DGL 324
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG GV P + + + + L ++DEV GFGRTG+ ++G + G
Sbjct: 221 AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE-WFGHQHFGF 279
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFN---TFGGNPVGCVIASTVLDVI 172
PD+ T AKG+++G+ P+GAV +A+ L FN T+ G+PV +A + +
Sbjct: 280 QPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 173 KDEELQYNCKQ 183
+DE + K
Sbjct: 340 RDEGIVQRVKD 350
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + K + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISDGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + K + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + K + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 12/140 (8%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E I G G+ P + + ++K + L ++DEV TGFGR G + G + +G+
Sbjct: 223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXF-GSDHYGI 281
Query: 117 SPDIVTMA-KGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIAST 167
PD++T+A KG+ + + P+ V+ + QVL + + H T+ +P+ CV A
Sbjct: 282 KPDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPI-CVAAGV 340
Query: 168 V-LDVIKDEELQYNCKQVSA 186
L++I + +L N + A
Sbjct: 341 ANLELIDEXDLVTNAGETGA 360
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AAL ES +QG SG+ P +L EL + + L I DEV TGFGRTG + E
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
V PD++ KGI G+ P+ T +I + L H +++ GN +GC +A
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330
Query: 168 VLDVIKDEELQYNCKQVSAQI 188
L + + E + + S ++
Sbjct: 331 NLALFESENIVEQVAEKSKKL 351
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 10/141 (7%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AAL ES +QG SG+ P +L EL + + L I DEV TGFGRTG + E
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
V PD++ KGI G+ P+ T +I + L H +++ GN +GC +A
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330
Query: 168 VLDVIKDEELQYNCKQVSAQI 188
L + + E + + S ++
Sbjct: 331 NLALFESENIVEQVAEKSKKL 351
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 56 AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA ++ +QG G++ PRY L ++ + L I DE+ TGFGRTG + +
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 292
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
GVSPDI+ + K + G+ + A + T ++A ++ A H TF NP+ C ++
Sbjct: 293 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVAS 352
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
++++ ++ + +++A + L
Sbjct: 353 VELLLGQDWRTRITELAAGLTAGL 376
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFGRTG + E ++PDI+ + + G + A +TT E+A+ ++ H
Sbjct: 250 GFGRTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 19 PIQTTRYCSCP-------LNQCEASNKFYEQLVNAFQYNVPITGA---AALIAESIQGVS 68
P++ + P LNQ E +F V + + GA AA I E I G
Sbjct: 176 PVEQVIHTEAPYYFRREDLNQTE--EQFVAHCVAELEALIEREGADTIAAFIGEPILGTG 233
Query: 69 GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA-KGI 127
G+ P + ++ ++ L ++DEV TGFGR G + G + +G+ PDI+T+A KG+
Sbjct: 234 GIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXF-GSDHYGLEPDIITIAXKGL 292
Query: 128 ANGF-PMGAVVTTTEIAQVLTKAAHFN-------TFGGNPVGCVIASTVLDVIKDEELQY 179
+ + P+ + + ++ +VL + N T+ +P+G L ++ + L
Sbjct: 293 TSAYAPLSGSIVSDKVWKVLEQGTDENGPIGHGWTYSAHPIGAAAGVANLKLLDELNLVS 352
Query: 180 NCKQVSAQI 188
N +V A +
Sbjct: 353 NAGEVGAYL 361
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFG TG + E ++PDI+ + K + G + A +TT E+A+ ++ H
Sbjct: 250 GFGATG-KLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99
+ +L+ A ++ + AA +I +QG G++ + +L+R ++ L I+DE+ T
Sbjct: 194 FARLMAAHRHEI----AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT 249
Query: 100 GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFN 153
GFG+TG + E ++PDI+ + + G + A +TT E+A+ ++ H
Sbjct: 250 GFGKTG-KLFACEHAEIAPDILCLGXALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
TF GNP+ C A+ L +++ + Q + Q+
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQL 343
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 56 AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA ++ +QG G++ PRY L ++ + L I DE+ TGFGRTG + +
Sbjct: 240 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 297
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
GVSPDI+ + K + G+ + A + T ++A ++ A TF NP+ C ++
Sbjct: 298 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVAS 357
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
++++ ++ + +++A + L
Sbjct: 358 VELLLGQDWRTRITELAAGLTAGL 381
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 56 AAALIAESIQGVSGVK-EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA ++ +QG G++ PRY L ++ + L I DE+ TGFGRTG + +
Sbjct: 215 AAVVVEPVVQGAGGMRFHDPRY-LHDLRDICRRYEVLLIFDEIATGFGRTGALF-AADHA 272
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTV 168
GVSPDI+ + K + G+ + A + T ++A ++ A TF NP+ C ++
Sbjct: 273 GVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVAS 332
Query: 169 LDVIKDEELQYNCKQVSAQIIGYL 192
++++ ++ + +++A + L
Sbjct: 333 VELLLGQDWRTRITELAAGLTAGL 356
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 29 PLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN 88
P N EA ++ +EQ N A +I E + G +G FL EL K
Sbjct: 166 PYNDLEAVSRLFEQYPNDI---------AGVILEPVVGNAGFIPPDAGFLEGLRELTKQY 216
Query: 89 NGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
L + DEV TGF Y G E GV+PD+ T+ K I G P+GA EI +++
Sbjct: 217 GALLVFDEVMTGFRIA---YGGAQEKFGVTPDLTTLGKVIGGGLPVGAYGGRAEIMKMVA 273
Query: 148 KAA---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189
A T GNP+ L+++ + +++ +++
Sbjct: 274 PAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLV 318
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +AE IQG G + F F EL + L I DEVQTG G TG W ++ V
Sbjct: 233 ACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
+PDIV K M V + N T+GGN V A +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
L
Sbjct: 352 GL 353
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 61/126 (48%), Gaps = 10/126 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +AE IQG G + F F EL + L I DEVQTG G TG W ++ V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAK-----GIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV 171
+PDIV K G+ G + V + V ++ A +T+GGN V A +L+V
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADN--VFAVPSRLA--STWGGNLTDMVRARRILEV 347
Query: 172 IKDEEL 177
I+ E L
Sbjct: 348 IEAEGL 353
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +AE IQG G + F F EL + L I DEVQTG G TG W ++ V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
+PDIV K M V + N T+GGN V A +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
L
Sbjct: 352 GL 353
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +AE IQG G + F F EL + L I DEVQTG G TG W ++ V
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDV 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-TFGGNPVGCVIASTVLDVIKDE 175
+PDIV K M V + N ++GGN V A +L+VI+ E
Sbjct: 292 APDIVAFGKKTQVCGVMAGRRVDEVADNVFAVPSRLNSSWGGNLTDMVRARRILEVIEAE 351
Query: 176 EL 177
L
Sbjct: 352 GL 353
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22 TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
T + P N EA + + A +I E I G SG FL
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82 YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
E+ ++ L + DEV TGF Y G E GV+PD+ T+ K I G P+GA
Sbjct: 226 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
EI Q++ A T GNP+ L++++ Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22 TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
T + P N EA + + A +I E I G SG FL
Sbjct: 180 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 230
Query: 82 YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
E+ ++ L + DEV TGF Y G E GV+PD+ T+ K I G P+GA
Sbjct: 231 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 287
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
EI Q++ A T GNP+ L++++ Q++ ++
Sbjct: 288 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 338
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22 TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
T + P N EA + + A +I E I G SG FL
Sbjct: 180 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 230
Query: 82 YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
E+ ++ L + DEV TGF Y G E GV+PD+ T+ K I G P+GA
Sbjct: 231 REITLEHDALLVFDEVMTGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 287
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
EI Q++ A T GNP+ L++++ Q++ ++
Sbjct: 288 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 338
>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Aeropyrum Pernix
pdb|2ZSL|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix
pdb|2ZSM|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
pdb|2ZSM|C Chain C, Crystal Structure Of Glutamate-1-semialdehyde 2,1-
Aminomutase From Aeropyrum Pernix, Hexagonal Form
Length = 434
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
P N EA + + + Y I G +I E + +GV R FL L +
Sbjct: 185 TPYNDVEALERVFAE------YGDRIAG---VIVEPVIANAGVIPPRREFLAALQRLSRE 235
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
+ L I DEV TGF + G+ + DI+ + K I GFP+GAV + E+ +LT
Sbjct: 236 SGALLILDEVVTGFRLGLEGAQGY--FNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLT 293
Query: 148 ---KAAHFNTFGGNPVGCVIASTVLDVIKDE 175
K + TF +P+ L +++E
Sbjct: 294 PQGKVFNAGTFNAHPITMAAGLATLKALEEE 324
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22 TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
T + P N EA + + A +I E I G SG FL
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82 YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
E+ ++ L + DEV TGF Y G E GV+PD+ T+ K I G P+GA
Sbjct: 226 REITLEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
EI Q++ A T GNP+ L++++ Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 22 TTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
T + P N EA + + A +I E I G SG FL
Sbjct: 175 TANTLTTPYNDLEAVKALFAENPGEI---------AGVILEPIVGNSGFIVPDAGFLEGL 225
Query: 82 YELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIANGFPMGAVVTTT 140
E+ ++ L + DEV TGF Y G E GV+PD+ T+ K I G P+GA
Sbjct: 226 REITLEHDALLVFDEVITGFRIA---YGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKR 282
Query: 141 EIAQVLTKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
EI Q++ A T GNP+ L++++ Q++ ++
Sbjct: 283 EIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRL 333
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 51 VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG 110
VP A E IQ G+ P FLR+ ++ +++ L + DEV+ G R+G +
Sbjct: 197 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC- 255
Query: 111 FEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170
FE G PDI+ + KG+ G P+ AV+ EI + A T GNP+ VL+
Sbjct: 256 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFA-MQTLHGNPISAAAGLAVLE 314
Query: 171 VIKDEEL 177
I ++L
Sbjct: 315 TIDRDDL 321
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 51 VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG 110
VP A E IQ G+ P FLR+ ++ +++ L + DEV+ G R+G +
Sbjct: 210 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHC- 268
Query: 111 FEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170
FE G PDI+ + KG+ G P+ AV+ EI + A T GNP+ VL+
Sbjct: 269 FEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAFA-MQTLHGNPISAAAGLAVLE 327
Query: 171 VIKDEEL 177
I ++L
Sbjct: 328 TIDRDDL 334
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHG 115
AA++ E I G G+ E FL + EL+ L I DEV T F Y G ++ G
Sbjct: 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFX---YGGAQDLLG 260
Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQ---VLTKAAHFNTFGGNPVGCVIASTVLDVI 172
V+PD+ + I G P+GA EI + L A T GNP L+V+
Sbjct: 261 VTPDLTALGXVIGGGLPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVL 320
Query: 173 KDEELQYNCKQVSAQI 188
+ E L ++ A +
Sbjct: 321 QQEGLYEKLDELGATL 336
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 10/153 (6%)
Query: 31 NQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG 90
NQ E + E +Y A +I E IQ G F R+ ++ + +
Sbjct: 234 NQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293
Query: 91 LFISDEVQTGFGRTGDNYWGFEMHGVS--PDIVTMAKGIAN-GFPMGAVVTTTEIAQVLT 147
F+ DEVQTG G TG +W E G+ D++T +K + GF ++
Sbjct: 294 AFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRI-- 350
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
FNT+ G+P ++ + V+++IK E+L N
Sbjct: 351 ----FNTWLGDPSKNLLLAEVINIIKREDLLSN 379
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-----GRTGDNYWGF 111
AA+I E + G +GV FL+ +E K+ L I+DEV TGF G T
Sbjct: 201 AAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGGAT------- 252
Query: 112 EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ---VLTKAAHFNTFGGNPVGCVIASTV 168
E+ G+ PD+VT+ K + G P A EI + L T GNP+
Sbjct: 253 ELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLAT 312
Query: 169 LDVIKD 174
L+++++
Sbjct: 313 LELLEE 318
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E + G GV FL E+ + N L I DEV TGF R N G +GV
Sbjct: 202 ACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYN-CGQGYYGV 259
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPV 160
+PD+ + K I G P+GA EI + + + T GNP+
Sbjct: 260 TPDLTCLGKVIGGGLPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPL 306
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE + GV FLR EL + LFI DEV +GF R G N+ + V
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVG-NHGMQALLDV 260
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNP 159
PD+ +AK A G P G + ++ VL++ + H TF GNP
Sbjct: 261 QPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNP 308
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 26 CSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI 85
+ P N E+ ++Q F ++ A +I E + G GV FL+ ++
Sbjct: 188 ITVPYNDLESVKLAFQQ----FGEDI-----AGVIVEPVAGNMGVVPPQEGFLQGLRDIT 238
Query: 86 KSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQV 145
+ L I DEV TGF + G+ GV+PD+ + K I G P+GA EI +
Sbjct: 239 EQYGSLLIFDEVMTGFRVDYNCAQGY--FGVTPDLTCLGKVIGGGLPVGAYGGKAEIMEQ 296
Query: 146 LTKAA---HFNTFGGNPV 160
+ + T GNP+
Sbjct: 297 IAPSGPIYQAGTLSGNPL 314
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 8/131 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I I G G+ F R ++ I DEV TGF R G E+ G
Sbjct: 597 ALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLGC 655
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEI------AQVLTKAAHFNTFGGNPVGCVIASTVL 169
PDI AK + G P+ + T + L H +++ + +GC A+ +
Sbjct: 656 KPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAI 715
Query: 170 DVIKDEELQYN 180
KD E +N
Sbjct: 716 QWFKDPETNHN 726
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 40.8 bits (94), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 8/132 (6%)
Query: 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
A +I I G G F R ++ I DEV TGF R G E+ G
Sbjct: 596 GALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVET-TTELLG 654
Query: 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTV 168
PDI AK + G P+ + T + + + H +++ + GC A+
Sbjct: 655 CKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAKA 714
Query: 169 LDVIKDEELQYN 180
+ KD E +N
Sbjct: 715 IQWFKDPETNHN 726
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 57 AALIAESIQG-VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
A +I E + G + + P FL L L I DEV TGF + +
Sbjct: 202 ACIIVEPVAGNXNCIPPLPE-FLPGLRALCDEFGALLIIDEVXTGFRVALAGAQDY--YH 258
Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPV 160
V PD+ + K I G P+GA E+ L T GNP+
Sbjct: 259 VIPDLTCLGKIIGGGXPVGAFGGRREVXNALAPTGPVYQAGTLSGNPI 306
>pdb|1M1C|A Chain A, Structure Of The L-A Virus
pdb|1M1C|B Chain B, Structure Of The L-A Virus
Length = 680
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 48 QYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYEL-IKSNNGLFISDEVQTGFGRTG 105
+Y ++G AALI A +++ S + P A ++ + N GL++ +TGFG T
Sbjct: 331 RYPFLLSGDAALIQATALEDWSAIMAKPELVFTYAMQVSVALNTGLYLRRVKKTGFGTTI 390
Query: 106 DN 107
D+
Sbjct: 391 DD 392
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A ++ E +QG SG FL+ E L + DEV T R + ++ G+
Sbjct: 222 AVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT--SRLAPHGLANKL-GI 278
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLT----KAAHFNTFGGN 158
D+ T+ K I G GA ++ + AH TF N
Sbjct: 279 RSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNN 324
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
Length = 595
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVI 172
G+ P I KG+ TT +A+ + K N F G PV CVIA T + +
Sbjct: 15 GIRPTIDGRRKGVRESLEE----TTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGV 70
Query: 173 K 173
K
Sbjct: 71 K 71
>pdb|3BX3|A Chain A, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
pdb|3BX3|B Chain B, Puf4 T650cC724R MUTANT BOUND TO COX17 RNA 3' UTR
Recognition Sequence
Length = 335
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 139 TTEIAQVLTK--AAHFNTFGGNPVGCVIASTVLDVIK-DEELQ 178
TTE VLTK + HF NP GC +++ IK DEE Q
Sbjct: 72 TTEQRIVLTKISSPHFVEISLNPHGCRALQKLIECIKTDEEAQ 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,871,119
Number of Sequences: 62578
Number of extensions: 233059
Number of successful extensions: 622
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 464
Number of HSP's gapped (non-prelim): 82
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)