Query psy13322
Match_columns 195
No_of_seqs 222 out of 1481
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 16:32:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0160 GabT 4-aminobutyrate a 100.0 2.6E-44 5.6E-49 311.5 16.5 175 1-195 185-360 (447)
2 COG4992 ArgD Ornithine/acetylo 100.0 6.7E-43 1.5E-47 296.2 14.8 150 40-195 174-323 (404)
3 KOG1404|consensus 100.0 2.6E-41 5.7E-46 282.7 16.4 176 1-195 176-352 (442)
4 COG0161 BioA Adenosylmethionin 100.0 6E-41 1.3E-45 289.4 15.0 158 34-194 195-359 (449)
5 PRK05965 hypothetical protein; 100.0 5.5E-40 1.2E-44 289.3 17.8 160 34-195 195-362 (459)
6 PRK07482 hypothetical protein; 100.0 6.4E-39 1.4E-43 282.7 17.5 157 36-194 202-366 (461)
7 PRK07678 aminotransferase; Val 100.0 6E-39 1.3E-43 282.2 17.1 157 36-194 195-358 (451)
8 PRK06062 hypothetical protein; 100.0 6.5E-39 1.4E-43 281.9 17.3 158 35-194 195-356 (451)
9 PRK07481 hypothetical protein; 100.0 1.9E-38 4.1E-43 278.9 17.9 158 36-195 195-360 (449)
10 PRK06938 diaminobutyrate--2-ox 100.0 1.2E-38 2.5E-43 281.1 16.4 158 36-195 211-369 (464)
11 PLN02760 4-aminobutyrate:pyruv 100.0 1.9E-38 4E-43 282.0 17.0 158 36-195 242-407 (504)
12 PRK06943 adenosylmethionine--8 100.0 3.1E-38 6.8E-43 277.7 17.4 159 34-195 202-368 (453)
13 PRK07030 adenosylmethionine--8 100.0 3.1E-38 6.7E-43 278.5 17.3 159 34-195 195-362 (466)
14 PRK07483 hypothetical protein; 100.0 3.6E-38 7.8E-43 276.7 17.1 157 36-194 181-343 (443)
15 PRK12403 putative aminotransfe 100.0 5.6E-38 1.2E-42 276.6 18.1 157 36-194 204-366 (460)
16 PRK07480 putative aminotransfe 100.0 5.7E-38 1.2E-42 276.3 17.9 157 36-194 201-363 (456)
17 PRK07036 hypothetical protein; 100.0 1E-37 2.3E-42 275.2 17.9 158 35-194 201-367 (466)
18 KOG1402|consensus 100.0 3.6E-38 7.7E-43 259.2 13.8 151 40-195 196-347 (427)
19 PRK08742 adenosylmethionine--8 100.0 8.5E-38 1.8E-42 275.9 17.2 158 34-194 217-382 (472)
20 PRK06931 diaminobutyrate--2-ox 100.0 5.6E-38 1.2E-42 276.5 15.9 140 54-195 224-363 (459)
21 PRK06105 aminotransferase; Pro 100.0 1.9E-37 4.1E-42 273.3 18.1 158 36-195 200-365 (460)
22 PRK06916 adenosylmethionine--8 100.0 1.4E-37 3E-42 274.1 16.8 158 35-195 205-371 (460)
23 PRK06148 hypothetical protein; 100.0 5.9E-37 1.3E-41 290.6 18.1 160 36-195 764-925 (1013)
24 PRK06058 4-aminobutyrate amino 100.0 4.8E-37 1E-41 269.7 16.0 140 54-194 218-357 (443)
25 TIGR03372 putres_am_tran putre 100.0 6.4E-37 1.4E-41 268.4 16.5 141 54-195 223-366 (442)
26 PRK08593 4-aminobutyrate amino 100.0 1.2E-36 2.7E-41 267.2 17.4 160 34-194 186-345 (445)
27 PRK06917 hypothetical protein; 100.0 1.4E-36 3.1E-41 266.9 17.4 159 35-195 180-344 (447)
28 PRK06541 hypothetical protein; 100.0 2.1E-36 4.5E-41 266.6 18.0 159 35-195 202-365 (460)
29 PRK05639 4-aminobutyrate amino 100.0 1.4E-36 3E-41 267.5 16.7 156 36-194 202-359 (457)
30 PRK13360 omega amino acid--pyr 100.0 2.5E-36 5.4E-41 265.0 18.0 158 35-194 196-361 (442)
31 PF00202 Aminotran_3: Aminotra 100.0 6.3E-37 1.4E-41 260.6 12.7 157 37-195 160-316 (339)
32 PRK06082 4-aminobutyrate amino 100.0 2.3E-36 4.9E-41 266.3 16.6 155 36-195 213-368 (459)
33 PRK11522 putrescine--2-oxoglut 100.0 2.4E-36 5.1E-41 266.0 16.6 154 40-194 215-372 (459)
34 TIGR00709 dat 2,4-diaminobutyr 100.0 2.4E-36 5.3E-41 265.1 16.0 139 54-194 205-343 (442)
35 PRK08117 4-aminobutyrate amino 100.0 4.4E-36 9.5E-41 262.9 17.6 158 36-194 188-345 (433)
36 PRK06149 hypothetical protein; 100.0 4.1E-36 9E-41 284.3 17.2 158 38-195 726-885 (972)
37 PRK09221 beta alanine--pyruvat 100.0 7.7E-36 1.7E-40 262.1 17.4 160 34-195 198-365 (445)
38 PRK12389 glutamate-1-semialdeh 100.0 4.5E-36 9.8E-41 262.5 15.8 151 40-194 187-340 (428)
39 PLN02482 glutamate-1-semialdeh 100.0 1.2E-35 2.7E-40 262.1 15.5 152 39-194 232-386 (474)
40 KOG1401|consensus 100.0 2.7E-35 5.8E-40 248.0 15.4 154 38-194 191-347 (433)
41 PRK05769 4-aminobutyrate amino 100.0 4.7E-35 1E-39 256.9 17.2 157 35-194 200-357 (441)
42 TIGR00700 GABAtrnsam 4-aminobu 100.0 4.9E-35 1.1E-39 255.4 17.1 158 36-194 178-335 (420)
43 PRK06173 adenosylmethionine--8 100.0 3.9E-35 8.5E-40 256.5 15.7 156 36-194 189-351 (429)
44 PRK00615 glutamate-1-semialdeh 100.0 5.7E-35 1.2E-39 255.6 15.6 152 39-194 187-341 (433)
45 PRK07986 adenosylmethionine--8 100.0 6.3E-35 1.4E-39 255.1 15.1 158 35-195 186-350 (428)
46 TIGR03246 arg_catab_astC succi 100.0 8.6E-35 1.9E-39 252.1 15.2 149 40-194 169-317 (397)
47 PRK06777 4-aminobutyrate amino 100.0 1.5E-34 3.3E-39 252.4 16.3 157 37-194 180-336 (421)
48 PRK05630 adenosylmethionine--8 100.0 1.3E-34 2.8E-39 252.8 15.2 153 36-194 186-346 (422)
49 PRK08360 4-aminobutyrate amino 100.0 7.1E-34 1.5E-38 249.6 17.8 157 37-194 186-342 (443)
50 PRK07495 4-aminobutyrate amino 100.0 4.4E-34 9.5E-39 249.7 16.3 158 37-195 180-337 (425)
51 PRK03715 argD acetylornithine 100.0 2.2E-34 4.8E-39 249.5 14.1 149 39-194 168-316 (395)
52 PRK06918 4-aminobutyrate amino 100.0 1E-33 2.2E-38 249.2 17.1 158 36-194 200-357 (451)
53 PRK09264 diaminobutyrate--2-ox 100.0 5E-34 1.1E-38 249.4 14.8 155 38-194 180-337 (425)
54 PLN02974 adenosylmethionine-8- 100.0 8.8E-34 1.9E-38 262.4 16.8 156 35-192 561-732 (817)
55 KOG1403|consensus 100.0 1.3E-34 2.8E-39 236.2 9.8 179 1-194 169-350 (452)
56 COG0001 HemL Glutamate-1-semia 100.0 2.5E-33 5.5E-38 240.0 15.7 152 39-194 186-341 (432)
57 PRK12381 bifunctional succinyl 100.0 2.3E-33 4.9E-38 243.9 15.2 149 40-194 173-321 (406)
58 PRK09792 4-aminobutyrate trans 100.0 3.2E-33 6.9E-38 244.1 15.9 158 36-194 179-336 (421)
59 TIGR00508 bioA adenosylmethion 100.0 8.7E-33 1.9E-37 241.7 16.6 157 36-195 190-353 (427)
60 TIGR02407 ectoine_ectB diamino 100.0 6.7E-33 1.4E-37 241.5 15.2 155 38-194 176-333 (412)
61 TIGR00699 GABAtrns_euk 4-amino 100.0 5.8E-33 1.3E-37 244.3 14.3 151 36-194 234-387 (464)
62 PRK05964 adenosylmethionine--8 100.0 1.5E-32 3.2E-37 240.0 16.3 157 36-195 182-346 (423)
63 PRK07046 aminotransferase; Val 100.0 1.2E-32 2.6E-37 242.3 15.2 149 39-194 206-363 (453)
64 PRK00062 glutamate-1-semialdeh 100.0 1.8E-32 4E-37 239.6 15.4 151 40-194 184-337 (426)
65 TIGR00713 hemL glutamate-1-sem 100.0 7.3E-32 1.6E-36 235.3 15.8 152 39-194 181-335 (423)
66 PRK08297 L-lysine aminotransfe 100.0 5E-32 1.1E-36 237.9 14.5 153 35-194 207-364 (443)
67 PRK04612 argD acetylornithine 100.0 1.2E-31 2.6E-36 233.3 16.3 151 40-195 176-326 (408)
68 PLN00144 acetylornithine trans 100.0 8.5E-32 1.8E-36 232.5 14.5 150 40-194 156-305 (382)
69 PLN02624 ornithine-delta-amino 100.0 2.2E-31 4.8E-36 235.6 16.4 152 40-194 211-363 (474)
70 TIGR01885 Orn_aminotrans ornit 100.0 4.7E-31 1E-35 228.8 16.4 153 40-195 173-326 (401)
71 PRK03244 argD acetylornithine 100.0 4.5E-31 9.7E-36 228.4 15.7 149 40-194 173-321 (398)
72 PRK04013 argD acetylornithine/ 100.0 2.6E-31 5.6E-36 228.0 13.6 134 40-184 152-285 (364)
73 PRK05093 argD bifunctional N-s 100.0 8.3E-31 1.8E-35 227.4 15.5 149 40-194 174-322 (403)
74 PRK01278 argD acetylornithine 100.0 1.1E-30 2.5E-35 225.4 16.0 149 40-194 165-313 (389)
75 TIGR03251 LAT_fam L-lysine 6-t 100.0 1.3E-30 2.8E-35 228.3 14.8 152 36-194 201-357 (431)
76 PRK02936 argD acetylornithine 100.0 2.1E-30 4.5E-35 222.7 15.6 149 40-194 157-305 (377)
77 PRK04073 rocD ornithine--oxo-a 100.0 2.6E-30 5.7E-35 223.8 15.4 149 40-194 176-325 (396)
78 PRK06209 glutamate-1-semialdeh 100.0 4.9E-30 1.1E-34 224.7 15.2 147 39-194 173-328 (431)
79 PRK08088 4-aminobutyrate amino 100.0 8.2E-29 1.8E-33 216.5 15.9 157 37-194 181-337 (425)
80 PRK00854 rocD ornithine--oxo-a 100.0 1.4E-28 3.1E-33 213.0 15.1 149 40-194 177-326 (401)
81 PRK02627 acetylornithine amino 100.0 4.6E-28 1E-32 209.0 15.2 149 40-194 172-320 (396)
82 PRK04260 acetylornithine amino 100.0 5E-28 1.1E-32 208.1 14.2 149 40-194 155-303 (375)
83 PTZ00125 ornithine aminotransf 100.0 9.6E-28 2.1E-32 207.5 15.6 151 39-194 166-317 (400)
84 cd00610 OAT_like Acetyl ornith 100.0 1.8E-27 3.9E-32 206.1 16.4 155 37-194 175-331 (413)
85 KOG1405|consensus 99.9 1.3E-25 2.8E-30 186.7 12.5 155 33-194 248-406 (484)
86 TIGR00707 argD acetylornithine 99.9 2.5E-24 5.3E-29 184.6 15.7 149 40-194 160-308 (379)
87 COG0156 BioF 7-keto-8-aminopel 99.9 1E-23 2.2E-28 181.2 14.5 146 40-193 155-311 (388)
88 PLN02822 serine palmitoyltrans 99.9 2.5E-22 5.5E-27 178.2 14.3 130 56-194 246-386 (481)
89 PLN02955 8-amino-7-oxononanoat 99.9 3.2E-22 6.9E-27 175.7 14.1 143 40-191 236-386 (476)
90 PLN03227 serine palmitoyltrans 99.8 2.1E-20 4.6E-25 162.1 15.0 135 55-194 138-280 (392)
91 PRK09064 5-aminolevulinate syn 99.8 4.8E-20 1E-24 160.0 14.8 145 40-194 164-318 (407)
92 TIGR01821 5aminolev_synth 5-am 99.8 2E-19 4.3E-24 156.0 15.3 146 40-194 163-317 (402)
93 KOG1360|consensus 99.8 2.3E-19 5E-24 151.6 13.2 150 36-194 285-445 (570)
94 PRK13393 5-aminolevulinate syn 99.8 8.7E-19 1.9E-23 152.3 15.4 145 40-194 163-317 (406)
95 COG0436 Aspartate/tyrosine/aro 99.8 9.1E-18 2E-22 145.6 12.7 150 40-195 153-312 (393)
96 COG1168 MalY Bifunctional PLP- 99.7 1.7E-17 3.8E-22 139.7 13.0 149 39-194 146-306 (388)
97 PRK13392 5-aminolevulinate syn 99.7 8.2E-17 1.8E-21 140.0 13.5 146 40-194 164-318 (410)
98 PRK07505 hypothetical protein; 99.7 1E-16 2.3E-21 139.1 13.9 139 40-190 169-320 (402)
99 KOG1359|consensus 99.7 7.9E-17 1.7E-21 131.9 11.9 147 40-193 179-333 (417)
100 PLN02483 serine palmitoyltrans 99.7 3.3E-16 7.1E-21 139.4 15.6 130 56-194 241-387 (489)
101 PRK07179 hypothetical protein; 99.7 3.5E-16 7.7E-21 135.9 15.0 146 39-195 169-322 (407)
102 KOG0257|consensus 99.7 1.4E-16 3E-21 135.5 10.8 150 40-195 162-326 (420)
103 TIGR01822 2am3keto_CoA 2-amino 99.7 6.4E-16 1.4E-20 133.2 14.7 149 40-194 154-311 (393)
104 PRK03317 histidinol-phosphate 99.7 3.2E-16 7E-21 134.4 11.2 144 40-194 149-297 (368)
105 PRK05958 8-amino-7-oxononanoat 99.7 1.6E-15 3.5E-20 129.9 14.4 147 40-194 155-309 (385)
106 PRK05937 8-amino-7-oxononanoat 99.7 2.8E-15 6E-20 128.9 14.9 145 40-193 127-282 (370)
107 PLN00175 aminotransferase fami 99.7 1.9E-15 4.2E-20 131.8 14.1 148 40-194 177-331 (413)
108 PRK07682 hypothetical protein; 99.7 8E-16 1.7E-20 132.3 11.2 148 40-194 144-298 (378)
109 TIGR01825 gly_Cac_T_rel pyrido 99.6 4E-15 8.7E-20 127.9 14.5 146 40-194 149-303 (385)
110 TIGR00858 bioF 8-amino-7-oxono 99.6 6.3E-15 1.4E-19 124.9 14.7 147 40-194 132-287 (360)
111 PRK07324 transaminase; Validat 99.6 4E-15 8.6E-20 128.1 13.4 146 40-194 143-294 (373)
112 PRK06939 2-amino-3-ketobutyrat 99.6 7.3E-15 1.6E-19 126.4 14.6 148 40-194 158-315 (397)
113 PRK06108 aspartate aminotransf 99.6 5.1E-15 1.1E-19 127.1 13.1 149 40-194 148-304 (382)
114 PRK06348 aspartate aminotransf 99.6 6.7E-15 1.5E-19 127.0 13.7 148 40-194 152-306 (384)
115 TIGR03576 pyridox_MJ0158 pyrid 99.6 1.2E-14 2.6E-19 124.3 14.4 132 55-193 136-271 (346)
116 PRK07777 aminotransferase; Val 99.6 9.9E-15 2.1E-19 125.9 13.5 149 40-194 149-304 (387)
117 PLN02368 alanine transaminase 99.6 2.1E-14 4.6E-19 125.2 14.3 154 40-195 194-377 (407)
118 PF00155 Aminotran_1_2: Aminot 99.6 2E-14 4.3E-19 122.5 13.5 152 40-194 132-294 (363)
119 PRK09082 methionine aminotrans 99.6 8.5E-15 1.8E-19 126.4 10.8 149 40-194 153-308 (386)
120 cd00609 AAT_like Aspartate ami 99.6 3.2E-14 6.9E-19 119.5 14.0 139 54-194 131-277 (350)
121 PRK06207 aspartate aminotransf 99.6 3.7E-14 8E-19 123.4 14.6 149 40-194 168-323 (405)
122 PRK07681 aspartate aminotransf 99.6 3.6E-14 7.8E-19 123.0 13.9 149 40-194 156-311 (399)
123 PRK12414 putative aminotransfe 99.6 3E-14 6.4E-19 123.1 13.0 149 40-194 152-306 (384)
124 PRK05942 aspartate aminotransf 99.6 3.1E-14 6.8E-19 123.2 13.1 149 40-194 160-315 (394)
125 PRK07309 aromatic amino acid a 99.6 5.2E-14 1.1E-18 121.8 14.4 151 40-194 153-309 (391)
126 TIGR03540 DapC_direct LL-diami 99.6 3.6E-14 7.8E-19 122.2 13.0 149 40-194 154-309 (383)
127 PRK08068 transaminase; Reviewe 99.6 4.4E-14 9.5E-19 122.1 13.5 149 40-194 157-312 (389)
128 PRK06290 aspartate aminotransf 99.6 4.9E-14 1.1E-18 123.0 13.6 148 40-194 169-322 (410)
129 PRK09276 LL-diaminopimelate am 99.6 4.5E-14 9.7E-19 121.7 13.1 149 40-194 156-311 (385)
130 PRK08175 aminotransferase; Val 99.6 7.1E-14 1.5E-18 121.1 13.9 152 40-194 151-309 (395)
131 PRK08960 hypothetical protein; 99.6 7.1E-14 1.5E-18 120.7 13.8 146 40-194 155-307 (387)
132 PRK09148 aminotransferase; Val 99.6 5.4E-14 1.2E-18 122.3 13.2 152 40-194 152-310 (405)
133 PRK08636 aspartate aminotransf 99.6 1.1E-13 2.3E-18 120.3 14.6 152 40-194 162-320 (403)
134 PRK05957 aspartate aminotransf 99.5 9.4E-14 2E-18 120.1 13.8 149 40-194 150-305 (389)
135 PRK08912 hypothetical protein; 99.5 8.3E-14 1.8E-18 120.2 13.4 149 40-194 149-304 (387)
136 PRK05764 aspartate aminotransf 99.5 1.2E-13 2.5E-18 119.3 13.8 149 40-194 154-310 (393)
137 KOG1357|consensus 99.5 7.1E-14 1.5E-18 120.0 11.6 150 37-194 250-423 (519)
138 PRK07550 hypothetical protein; 99.5 1.5E-13 3.3E-18 118.5 13.1 149 40-194 153-308 (386)
139 PRK07366 succinyldiaminopimela 99.5 1.5E-13 3.3E-18 118.6 12.9 139 55-194 165-311 (388)
140 cd06454 KBL_like KBL_like; thi 99.5 3.7E-13 8.1E-18 113.8 14.3 148 40-194 117-272 (349)
141 PRK07568 aspartate aminotransf 99.5 3.6E-13 7.8E-18 116.4 14.3 148 40-194 152-307 (397)
142 PRK09147 succinyldiaminopimela 99.5 3.8E-13 8.2E-18 116.5 13.6 149 40-194 156-316 (396)
143 PRK07683 aminotransferase A; V 99.5 4.4E-13 9.4E-18 115.9 13.9 148 40-194 151-305 (387)
144 PRK08361 aspartate aminotransf 99.5 1.8E-13 3.9E-18 118.3 11.5 149 40-194 156-311 (391)
145 TIGR03539 DapC_actino succinyl 99.5 3.1E-13 6.8E-18 115.6 12.7 138 55-194 142-288 (357)
146 PTZ00377 alanine aminotransfer 99.5 3.8E-13 8.3E-18 119.5 13.7 153 40-194 202-384 (481)
147 TIGR03537 DapC succinyldiamino 99.5 4.4E-13 9.6E-18 114.3 13.5 147 40-194 126-277 (350)
148 PRK06225 aspartate aminotransf 99.5 3.1E-13 6.7E-18 116.4 12.6 146 40-194 147-296 (380)
149 PRK07865 N-succinyldiaminopime 99.5 3.3E-13 7.2E-18 115.6 12.7 138 55-194 148-294 (364)
150 PRK15481 transcriptional regul 99.5 4.8E-13 1E-17 117.2 13.8 146 40-194 201-355 (431)
151 PRK06107 aspartate aminotransf 99.5 3.7E-13 8E-18 116.9 12.7 149 40-194 156-313 (402)
152 PLN02656 tyrosine transaminase 99.5 6.4E-13 1.4E-17 115.8 14.0 148 40-194 159-321 (409)
153 PLN02187 rooty/superroot1 99.5 5.9E-13 1.3E-17 117.9 13.0 149 40-194 194-356 (462)
154 PRK06855 aminotransferase; Val 99.5 1.1E-12 2.5E-17 115.1 14.7 150 40-194 159-324 (433)
155 PLN02397 aspartate transaminas 99.5 8.8E-13 1.9E-17 115.5 13.8 152 40-194 181-354 (423)
156 PRK07337 aminotransferase; Val 99.5 7.2E-13 1.6E-17 114.4 12.9 146 40-194 153-305 (388)
157 PLN00145 tyrosine/nicotianamin 99.5 1.2E-12 2.5E-17 115.0 14.4 148 40-194 180-342 (430)
158 PRK08153 histidinol-phosphate 99.5 6E-13 1.3E-17 114.4 11.9 133 55-194 155-292 (369)
159 TIGR01140 L_thr_O3P_dcar L-thr 99.5 7.2E-13 1.6E-17 112.2 11.9 143 40-194 116-263 (330)
160 TIGR01264 tyr_amTase_E tyrosin 99.5 1.4E-12 3E-17 113.1 13.9 146 40-194 158-318 (401)
161 TIGR03538 DapC_gpp succinyldia 99.5 1E-12 2.3E-17 113.6 13.1 149 40-194 155-315 (393)
162 PTZ00376 aspartate aminotransf 99.5 7.6E-13 1.6E-17 115.1 12.2 152 40-194 163-336 (404)
163 PRK02731 histidinol-phosphate 99.5 7.3E-13 1.6E-17 113.3 11.8 146 40-194 144-294 (367)
164 PRK03158 histidinol-phosphate 99.4 6.1E-13 1.3E-17 113.6 10.5 146 40-194 141-291 (359)
165 PLN00143 tyrosine/nicotianamin 99.4 2.3E-12 5E-17 112.3 14.1 148 40-194 160-322 (409)
166 PTZ00433 tyrosine aminotransfe 99.4 2.8E-12 6E-17 111.8 14.5 148 40-194 167-327 (412)
167 PRK05664 threonine-phosphate d 99.4 2.7E-12 5.8E-17 108.8 14.0 129 58-194 128-261 (330)
168 PLN02231 alanine transaminase 99.4 2.3E-12 5.1E-17 115.9 14.3 154 40-195 255-437 (534)
169 PRK03321 putative aminotransfe 99.4 4.9E-13 1.1E-17 113.8 9.4 146 40-194 135-285 (352)
170 PRK08363 alanine aminotransfer 99.4 2.1E-12 4.4E-17 112.0 13.1 148 40-194 156-314 (398)
171 PRK07590 L,L-diaminopimelate a 99.4 3.5E-12 7.6E-17 111.0 13.5 139 55-194 176-334 (409)
172 PRK08056 threonine-phosphate d 99.4 2.8E-12 6.1E-17 109.6 12.4 135 55-194 142-282 (356)
173 TIGR01141 hisC histidinol-phos 99.4 2E-12 4.3E-17 109.7 11.0 143 40-194 132-279 (346)
174 TIGR02539 SepCysS Sep-tRNA:Cys 99.4 6.4E-12 1.4E-16 108.1 14.3 146 40-195 129-287 (370)
175 PRK13355 bifunctional HTH-doma 99.4 4.7E-12 1E-16 113.5 13.6 146 40-194 271-432 (517)
176 PRK06358 threonine-phosphate d 99.4 5.6E-12 1.2E-16 107.8 13.5 134 56-194 142-283 (354)
177 PRK09257 aromatic amino acid a 99.4 3.6E-12 7.7E-17 110.5 12.4 153 39-194 158-331 (396)
178 PRK00950 histidinol-phosphate 99.4 1.9E-12 4.2E-17 110.4 10.0 141 40-193 148-291 (361)
179 TIGR01265 tyr_nico_aTase tyros 99.4 8.1E-12 1.7E-16 108.6 13.8 148 40-194 159-320 (403)
180 PRK06425 histidinol-phosphate 99.4 4.5E-12 9.7E-17 107.5 11.9 134 55-194 122-261 (332)
181 PRK14809 histidinol-phosphate 99.4 3.5E-12 7.7E-17 108.9 11.2 133 56-193 155-290 (357)
182 PRK06959 putative threonine-ph 99.4 8.1E-12 1.8E-16 106.4 13.4 129 58-194 134-267 (339)
183 PLN02450 1-aminocyclopropane-1 99.4 1.1E-11 2.5E-16 109.9 14.7 152 40-194 175-346 (468)
184 cd00613 GDC-P Glycine cleavage 99.4 9.4E-12 2E-16 107.4 13.5 140 40-194 149-326 (398)
185 PRK02610 histidinol-phosphate 99.4 8.9E-12 1.9E-16 107.3 13.2 145 40-194 154-303 (374)
186 PLN03026 histidinol-phosphate 99.4 5.6E-12 1.2E-16 108.9 11.9 141 40-194 164-309 (380)
187 PRK09331 Sep-tRNA:Cys-tRNA syn 99.4 2E-11 4.3E-16 105.7 14.6 148 40-195 141-299 (387)
188 PRK05839 hypothetical protein; 99.4 8E-12 1.7E-16 107.6 12.0 136 55-192 155-301 (374)
189 PLN02607 1-aminocyclopropane-1 99.4 1.6E-11 3.4E-16 108.5 14.1 152 40-194 184-353 (447)
190 PRK14807 histidinol-phosphate 99.4 1.1E-11 2.5E-16 105.7 12.8 141 40-194 137-281 (351)
191 PRK09275 aspartate aminotransf 99.4 2.2E-12 4.8E-17 115.5 8.7 142 40-192 231-423 (527)
192 PLN02376 1-aminocyclopropane-1 99.4 1.9E-11 4.1E-16 109.2 14.5 152 40-194 183-353 (496)
193 TIGR03542 DAPAT_plant LL-diami 99.3 2.2E-11 4.7E-16 105.8 14.0 139 55-194 173-327 (402)
194 PRK01533 histidinol-phosphate 99.3 2.9E-12 6.3E-17 110.2 8.3 145 40-194 141-291 (366)
195 PLN02242 methionine gamma-lyas 99.3 1.1E-11 2.3E-16 108.7 11.9 139 40-194 152-296 (418)
196 PRK09265 aminotransferase AlaT 99.3 2.2E-11 4.7E-16 105.9 13.6 146 40-194 158-319 (404)
197 TIGR03801 asp_4_decarbox aspar 99.3 5.2E-12 1.1E-16 113.0 8.9 142 40-192 230-422 (521)
198 PRK07392 threonine-phosphate d 99.3 1.8E-11 3.9E-16 104.8 11.5 131 56-194 149-285 (360)
199 PRK04781 histidinol-phosphate 99.3 2.8E-11 6E-16 104.0 12.5 133 55-194 152-291 (364)
200 cd06502 TA_like Low-specificit 99.3 1.7E-11 3.7E-16 103.3 10.5 149 39-194 109-266 (338)
201 cd00614 CGS_like CGS_like: Cys 99.3 2.8E-11 6.1E-16 104.2 11.9 137 40-194 115-256 (369)
202 PLN03226 serine hydroxymethylt 99.3 7.3E-11 1.6E-15 104.9 14.8 141 39-194 171-332 (475)
203 PRK09105 putative aminotransfe 99.3 2.1E-11 4.6E-16 105.0 11.1 131 56-194 166-301 (370)
204 PRK13238 tnaA tryptophanase/L- 99.3 4.8E-11 1E-15 105.7 13.4 155 39-194 162-334 (460)
205 PLN02721 threonine aldolase 99.3 9.7E-11 2.1E-15 99.3 13.4 151 39-194 119-276 (353)
206 PRK05166 histidinol-phosphate 99.3 3.9E-11 8.5E-16 103.1 10.9 145 40-194 149-301 (371)
207 PRK09440 avtA valine--pyruvate 99.3 7.4E-11 1.6E-15 102.8 12.7 136 55-193 179-322 (416)
208 PRK13034 serine hydroxymethylt 99.3 1.7E-10 3.8E-15 100.9 14.7 141 39-194 156-304 (416)
209 TIGR01325 O_suc_HS_sulf O-succ 99.2 6.9E-11 1.5E-15 102.2 11.5 137 40-194 129-269 (380)
210 TIGR03301 PhnW-AepZ 2-aminoeth 99.2 2.5E-10 5.5E-15 96.6 14.7 144 40-194 113-277 (355)
211 COG1167 ARO8 Transcriptional r 99.2 1.3E-10 2.9E-15 102.9 13.3 150 40-194 215-372 (459)
212 COG0079 HisC Histidinol-phosph 99.2 6.5E-11 1.4E-15 101.6 10.9 132 55-194 145-281 (356)
213 PRK06460 hypothetical protein; 99.2 1.4E-10 3E-15 100.3 12.7 127 55-194 130-260 (376)
214 PRK07049 methionine gamma-lyas 99.2 2.2E-10 4.7E-15 100.6 13.8 145 40-194 159-310 (427)
215 PRK04870 histidinol-phosphate 99.2 6.2E-11 1.3E-15 101.2 9.9 142 40-194 142-286 (356)
216 PRK14808 histidinol-phosphate 99.2 1.4E-10 2.9E-15 98.7 11.7 129 57-194 140-271 (335)
217 PRK01688 histidinol-phosphate 99.2 3E-11 6.5E-16 103.2 7.7 142 40-194 136-284 (351)
218 PRK08637 hypothetical protein; 99.2 3.4E-10 7.3E-15 98.0 14.2 153 39-193 131-310 (388)
219 cd06452 SepCysS Sep-tRNA:Cys-t 99.2 4.3E-10 9.3E-15 96.2 14.5 147 40-194 122-279 (361)
220 PLN02672 methionine S-methyltr 99.2 1.4E-10 3.1E-15 110.5 12.4 151 40-194 817-988 (1082)
221 PRK05387 histidinol-phosphate 99.2 1.2E-10 2.7E-15 99.0 10.8 130 58-194 147-282 (353)
222 PRK00011 glyA serine hydroxyme 99.2 4.3E-10 9.2E-15 98.0 14.1 141 39-194 153-301 (416)
223 cd06451 AGAT_like Alanine-glyo 99.2 6.7E-10 1.5E-14 94.5 14.1 141 40-194 113-277 (356)
224 PRK10874 cysteine sulfinate de 99.2 4.7E-10 1E-14 97.2 13.1 138 40-194 150-314 (401)
225 PRK03967 histidinol-phosphate 99.2 2.2E-10 4.8E-15 97.3 10.5 127 57-194 142-273 (337)
226 PRK13580 serine hydroxymethylt 99.2 8.3E-10 1.8E-14 97.8 14.3 141 39-194 208-357 (493)
227 TIGR03392 FeS_syn_CsdA cystein 99.2 5.4E-10 1.2E-14 96.7 13.0 138 40-194 147-311 (398)
228 PRK06836 aspartate aminotransf 99.2 6.7E-10 1.4E-14 96.3 13.6 144 40-194 158-318 (394)
229 PRK07810 O-succinylhomoserine 99.2 4.1E-10 8.9E-15 98.2 12.0 136 40-193 145-285 (403)
230 PRK08354 putative aminotransfe 99.2 8.9E-10 1.9E-14 92.6 13.6 115 40-170 108-223 (311)
231 TIGR02326 transamin_PhnW 2-ami 99.2 1.3E-09 2.9E-14 93.1 14.8 142 40-194 117-282 (363)
232 TIGR01976 am_tr_V_VC1184 cyste 99.2 6.7E-10 1.5E-14 95.9 13.0 138 40-194 146-312 (397)
233 TIGR01324 cysta_beta_ly_B cyst 99.1 7.3E-10 1.6E-14 95.9 12.9 135 41-193 126-264 (377)
234 PRK06234 methionine gamma-lyas 99.1 7.5E-10 1.6E-14 96.4 13.1 136 40-193 139-282 (400)
235 cd06453 SufS_like Cysteine des 99.1 8.7E-10 1.9E-14 94.4 13.3 139 40-194 129-293 (373)
236 TIGR01814 kynureninase kynuren 99.1 1.7E-09 3.7E-14 94.1 14.8 142 40-194 158-327 (406)
237 cd00378 SHMT Serine-glycine hy 99.1 1.3E-09 2.9E-14 94.3 14.2 140 39-194 149-297 (402)
238 PRK06767 methionine gamma-lyas 99.1 6.4E-10 1.4E-14 96.4 12.0 137 40-194 136-277 (386)
239 TIGR01328 met_gam_lyase methio 99.1 9.2E-10 2E-14 95.7 13.0 137 40-194 134-276 (391)
240 PRK02948 cysteine desulfurase; 99.1 8.5E-10 1.8E-14 94.9 12.1 138 40-194 128-275 (381)
241 PRK07504 O-succinylhomoserine 99.1 7.5E-10 1.6E-14 96.4 11.6 136 40-193 140-280 (398)
242 KOG0259|consensus 99.1 1.7E-09 3.7E-14 91.7 13.2 151 38-195 187-352 (447)
243 PRK08249 cystathionine gamma-s 99.1 1.4E-09 3.1E-14 94.7 12.8 137 40-194 139-279 (398)
244 TIGR03235 DNA_S_dndA cysteine 99.1 6.8E-10 1.5E-14 94.6 10.6 138 40-194 128-279 (353)
245 PRK13520 L-tyrosine decarboxyl 99.1 1.9E-09 4.1E-14 92.1 13.3 145 39-194 140-301 (371)
246 cd00617 Tnase_like Tryptophana 99.1 1.2E-09 2.6E-14 96.0 12.1 153 39-194 137-309 (431)
247 TIGR02006 IscS cysteine desulf 99.1 7E-10 1.5E-14 96.4 10.6 138 40-194 132-281 (402)
248 PRK09295 bifunctional cysteine 99.1 2.5E-09 5.5E-14 92.9 13.7 138 40-194 154-319 (406)
249 PRK10534 L-threonine aldolase; 99.1 6.4E-10 1.4E-14 93.9 9.7 144 40-194 113-265 (333)
250 PTZ00094 serine hydroxymethylt 99.1 2.5E-09 5.5E-14 94.5 13.8 141 39-194 170-321 (452)
251 PRK04635 histidinol-phosphate 99.1 3.7E-10 8.1E-15 96.5 8.3 132 55-194 147-285 (354)
252 PRK08133 O-succinylhomoserine 99.1 1.3E-09 2.8E-14 94.7 11.7 137 40-194 136-276 (390)
253 PRK07908 hypothetical protein; 99.1 2.4E-09 5.3E-14 91.2 12.9 130 55-194 139-275 (349)
254 PRK08776 cystathionine gamma-s 99.1 2.5E-09 5.4E-14 93.4 13.1 137 40-194 135-276 (405)
255 TIGR01979 sufS cysteine desulf 99.1 3.6E-09 7.9E-14 91.6 13.8 138 40-194 149-313 (403)
256 PRK07503 methionine gamma-lyas 99.1 2.8E-09 6.1E-14 93.0 12.9 136 40-193 140-281 (403)
257 PRK13479 2-aminoethylphosphona 99.1 7E-09 1.5E-13 88.8 15.1 142 40-194 119-283 (368)
258 PRK08247 cystathionine gamma-s 99.0 2.9E-09 6.3E-14 91.7 11.8 137 40-194 126-267 (366)
259 PLN02409 serine--glyoxylate am 99.0 6.3E-09 1.4E-13 90.6 13.9 144 40-194 123-291 (401)
260 PRK07811 cystathionine gamma-s 99.0 4.1E-09 9E-14 91.5 12.6 137 40-194 136-277 (388)
261 cd00615 Orn_deC_like Ornithine 99.0 7.9E-10 1.7E-14 92.3 7.7 143 40-194 142-294 (294)
262 PLN02509 cystathionine beta-ly 99.0 4.3E-09 9.2E-14 93.3 12.6 137 40-194 207-348 (464)
263 PRK08574 cystathionine gamma-s 99.0 5.3E-09 1.1E-13 90.8 12.2 137 40-193 126-267 (385)
264 TIGR01437 selA_rel uncharacter 99.0 7.5E-09 1.6E-13 89.1 12.7 138 40-195 138-282 (363)
265 KOG1358|consensus 99.0 7.4E-10 1.6E-14 94.1 6.0 150 37-193 207-373 (467)
266 PLN02651 cysteine desulfurase 99.0 3.9E-09 8.5E-14 90.4 10.7 138 40-193 128-276 (364)
267 cd00616 AHBA_syn 3-amino-5-hyd 99.0 1.4E-08 3.1E-13 86.0 13.1 135 40-194 96-250 (352)
268 TIGR03531 selenium_SpcS O-phos 99.0 2.2E-08 4.8E-13 88.2 14.6 145 39-194 190-343 (444)
269 PLN02855 Bifunctional selenocy 99.0 1.8E-08 4E-13 88.1 13.9 138 40-194 163-327 (424)
270 TIGR02080 O_succ_thio_ly O-suc 98.9 1.3E-08 2.7E-13 88.3 12.0 136 40-193 126-266 (382)
271 KOG0256|consensus 98.9 2.7E-08 5.9E-13 85.2 13.3 153 40-195 210-378 (471)
272 PF00266 Aminotran_5: Aminotra 98.9 6.7E-08 1.5E-12 82.9 16.0 140 40-195 129-294 (371)
273 TIGR03402 FeS_nifS cysteine de 98.9 1.3E-08 2.9E-13 87.4 11.5 135 40-193 126-272 (379)
274 PRK08045 cystathionine gamma-s 98.9 2.2E-08 4.8E-13 86.9 12.8 136 40-193 127-267 (386)
275 TIGR03812 tyr_de_CO2_Arch tyro 98.9 5.2E-08 1.1E-12 83.3 14.8 147 39-195 142-307 (373)
276 PRK07269 cystathionine gamma-s 98.9 1.5E-08 3.2E-13 87.4 11.2 136 40-193 126-266 (364)
277 PRK07582 cystathionine gamma-l 98.9 1.7E-08 3.7E-13 87.0 11.5 127 55-194 132-263 (366)
278 TIGR01329 cysta_beta_ly_E cyst 98.9 1.8E-08 3.9E-13 87.2 11.1 136 40-193 121-261 (378)
279 PRK06084 O-acetylhomoserine am 98.9 2.7E-08 5.9E-13 87.4 12.1 83 40-138 133-218 (425)
280 TIGR01977 am_tr_V_EF2568 cyste 98.9 3.5E-08 7.6E-13 84.5 12.3 140 40-194 127-288 (376)
281 PRK08861 cystathionine gamma-s 98.8 3.5E-08 7.6E-13 85.8 11.6 136 40-193 128-268 (388)
282 TIGR03403 nifS_epsilon cystein 98.8 3.3E-08 7.2E-13 85.1 11.3 138 40-194 130-277 (382)
283 PRK14012 cysteine desulfurase; 98.8 2.6E-08 5.7E-13 86.5 10.7 139 40-194 134-283 (404)
284 PRK09028 cystathionine beta-ly 98.8 3.1E-08 6.7E-13 86.2 11.0 135 41-193 137-275 (394)
285 PRK07050 cystathionine beta-ly 98.8 4.9E-08 1.1E-12 85.0 11.1 135 41-193 141-280 (394)
286 PRK05968 hypothetical protein; 98.8 6E-08 1.3E-12 84.3 11.4 136 40-194 138-278 (389)
287 TIGR01326 OAH_OAS_sulfhy OAH/O 98.8 3.9E-08 8.5E-13 86.2 9.9 85 40-140 132-219 (418)
288 PRK00451 glycine dehydrogenase 98.8 7.6E-08 1.7E-12 84.7 11.5 138 39-194 193-370 (447)
289 cd06450 DOPA_deC_like DOPA dec 98.8 2.2E-08 4.7E-13 84.7 7.3 132 39-194 131-266 (345)
290 PRK07671 cystathionine beta-ly 98.7 1.2E-07 2.6E-12 82.1 11.6 136 40-193 124-264 (377)
291 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.7 2.3E-07 5.1E-12 80.0 12.9 133 40-193 109-268 (375)
292 PRK08064 cystathionine beta-ly 98.7 1.4E-07 3E-12 82.0 11.4 136 40-193 128-268 (390)
293 PRK05994 O-acetylhomoserine am 98.7 2.1E-07 4.6E-12 81.8 12.5 83 40-138 138-223 (427)
294 PRK06176 cystathionine gamma-s 98.7 1.7E-07 3.6E-12 81.3 11.0 135 40-192 124-263 (380)
295 KOG0633|consensus 98.7 2.2E-07 4.7E-12 75.8 10.8 145 40-195 148-299 (375)
296 PRK05939 hypothetical protein; 98.7 1.6E-07 3.5E-12 81.9 10.8 84 40-139 121-207 (397)
297 TIGR02379 ECA_wecE TDP-4-keto- 98.7 4E-07 8.6E-12 78.8 13.1 90 40-148 109-205 (376)
298 cd01494 AAT_I Aspartate aminot 98.6 1.3E-07 2.8E-12 71.1 7.9 78 54-139 91-170 (170)
299 COG0520 csdA Selenocysteine ly 98.6 6.7E-07 1.5E-11 78.2 13.1 139 40-195 152-319 (405)
300 PRK05967 cystathionine beta-ly 98.6 3.8E-07 8.3E-12 79.4 11.3 135 41-193 140-278 (395)
301 PRK11658 UDP-4-amino-4-deoxy-L 98.6 8.7E-07 1.9E-11 76.6 13.2 135 40-194 111-273 (379)
302 PRK07812 O-acetylhomoserine am 98.6 4.1E-07 8.8E-12 80.3 11.3 83 40-138 145-231 (436)
303 PRK08114 cystathionine beta-ly 98.6 4E-07 8.8E-12 79.3 10.7 136 40-193 137-278 (395)
304 PRK08248 O-acetylhomoserine am 98.5 8.1E-07 1.8E-11 78.3 11.2 83 40-138 139-224 (431)
305 COG1104 NifS Cysteine sulfinat 98.5 7.9E-07 1.7E-11 76.5 10.5 139 39-194 130-278 (386)
306 KOG0634|consensus 98.5 2.7E-06 6E-11 73.5 13.6 153 40-193 184-370 (472)
307 TIGR03588 PseC UDP-4-keto-6-de 98.5 3.1E-06 6.7E-11 73.0 14.1 138 39-194 106-277 (380)
308 PRK04311 selenocysteine syntha 98.5 2.1E-06 4.5E-11 76.3 12.6 99 40-148 206-315 (464)
309 PRK13237 tyrosine phenol-lyase 98.5 4.4E-06 9.5E-11 73.7 13.7 153 39-194 162-334 (460)
310 PRK02769 histidine decarboxyla 98.4 7.6E-06 1.6E-10 71.0 14.5 147 39-194 146-310 (380)
311 PF01053 Cys_Met_Meta_PP: Cys/ 98.4 2.1E-06 4.5E-11 74.7 11.0 137 40-194 130-273 (386)
312 TIGR00474 selA seryl-tRNA(sec) 98.4 3.5E-06 7.6E-11 74.7 12.1 97 40-149 201-311 (454)
313 PRK06702 O-acetylhomoserine am 98.4 2.1E-06 4.5E-11 75.6 10.5 137 40-194 137-309 (432)
314 COG0075 Serine-pyruvate aminot 98.4 1.2E-05 2.6E-10 69.5 14.7 141 40-195 119-284 (383)
315 PRK04366 glycine dehydrogenase 98.4 4.1E-06 8.9E-11 74.8 12.4 141 40-194 198-367 (481)
316 PRK15407 lipopolysaccharide bi 98.4 6.9E-06 1.5E-10 72.6 13.6 133 40-194 149-327 (438)
317 PRK08134 O-acetylhomoserine am 98.4 3.9E-06 8.4E-11 74.0 11.8 81 40-136 139-222 (433)
318 TIGR02618 tyr_phenol_ly tyrosi 98.3 1E-05 2.2E-10 71.3 12.4 153 39-194 155-327 (450)
319 PRK05613 O-acetylhomoserine am 98.3 6.8E-06 1.5E-10 72.6 11.1 83 40-138 145-231 (437)
320 PF01276 OKR_DC_1: Orn/Lys/Arg 98.3 6.6E-06 1.4E-10 72.0 9.7 142 41-193 154-315 (417)
321 KOG0053|consensus 98.3 1.1E-05 2.3E-10 70.0 10.8 107 55-172 162-273 (409)
322 PF00464 SHMT: Serine hydroxym 98.2 3.3E-05 7.2E-10 67.3 12.8 142 38-194 156-318 (399)
323 PLN02414 glycine dehydrogenase 98.1 3.7E-05 8E-10 73.8 13.0 145 39-194 652-824 (993)
324 KOG1368|consensus 98.1 2.4E-05 5.2E-10 65.0 10.1 149 39-193 135-292 (384)
325 PLN02271 serine hydroxymethylt 98.1 7.1E-05 1.5E-09 67.6 13.8 143 38-194 285-453 (586)
326 KOG2862|consensus 98.1 9.2E-05 2E-09 61.9 12.8 140 40-194 131-300 (385)
327 COG3977 Alanine-alpha-ketoisov 98.1 7E-05 1.5E-09 62.5 11.6 114 54-170 178-294 (417)
328 PLN03032 serine decarboxylase; 98.1 0.00015 3.2E-09 62.9 14.1 147 39-194 147-313 (374)
329 TIGR03799 NOD_PanD_pyr putativ 98.1 7.2E-05 1.6E-09 67.5 12.3 151 39-194 248-418 (522)
330 PF01212 Beta_elim_lyase: Beta 98.0 5.2E-06 1.1E-10 69.6 4.1 150 40-194 108-269 (290)
331 PF01041 DegT_DnrJ_EryC1: DegT 98.0 0.00019 4E-09 61.7 13.8 133 40-194 103-259 (363)
332 PRK06434 cystathionine gamma-l 98.0 6.4E-05 1.4E-09 65.4 10.9 124 55-193 148-276 (384)
333 TIGR02617 tnaA_trp_ase tryptop 98.0 9.5E-05 2.1E-09 65.1 11.9 150 39-194 168-343 (467)
334 COG0399 WecE Predicted pyridox 97.9 0.00016 3.4E-09 62.5 11.9 132 40-193 112-266 (374)
335 PRK15029 arginine decarboxylas 97.9 8.7E-05 1.9E-09 69.4 11.0 147 40-194 292-463 (755)
336 COG1921 SelA Selenocysteine sy 97.9 8.2E-05 1.8E-09 64.2 9.7 125 38-174 144-271 (395)
337 COG2008 GLY1 Threonine aldolas 97.9 9.5E-05 2.1E-09 62.7 9.6 148 40-193 114-269 (342)
338 COG0112 GlyA Glycine/serine hy 97.8 0.00034 7.4E-09 60.2 12.1 144 36-194 151-302 (413)
339 PRK05367 glycine dehydrogenase 97.8 0.00032 6.9E-09 67.4 12.5 144 40-194 627-792 (954)
340 COG1103 Archaea-specific pyrid 97.8 0.00081 1.8E-08 55.6 12.9 100 37-148 140-241 (382)
341 PLN02880 tyrosine decarboxylas 97.8 0.00015 3.2E-09 65.0 9.5 151 39-194 222-398 (490)
342 TIGR01788 Glu-decarb-GAD gluta 97.7 0.00054 1.2E-08 60.5 12.0 145 39-194 175-344 (431)
343 COG2873 MET17 O-acetylhomoseri 97.7 8.4E-05 1.8E-09 63.5 6.3 84 40-139 137-223 (426)
344 COG0626 MetC Cystathionine bet 97.7 0.00051 1.1E-08 59.8 11.1 126 55-193 149-280 (396)
345 PLN02724 Molybdenum cofactor s 97.7 0.00057 1.2E-08 64.8 11.8 131 55-195 192-359 (805)
346 TIGR00461 gcvP glycine dehydro 97.7 0.0014 3E-08 62.7 14.1 144 39-194 614-784 (939)
347 KOG1549|consensus 97.6 0.00037 8E-09 60.7 8.5 85 39-140 170-257 (428)
348 PRK03080 phosphoserine aminotr 97.5 0.00079 1.7E-08 58.2 10.2 122 59-194 140-290 (378)
349 PRK12566 glycine dehydrogenase 97.5 0.001 2.2E-08 63.5 11.2 144 38-194 626-793 (954)
350 COG1448 TyrB Aspartate/tyrosin 97.5 0.0014 2.9E-08 56.4 10.8 153 39-194 158-331 (396)
351 TIGR01366 serC_3 phosphoserine 97.5 0.001 2.2E-08 57.4 10.2 123 55-194 128-279 (361)
352 PLN02263 serine decarboxylase 97.4 0.0062 1.3E-07 54.3 14.3 149 39-194 214-380 (470)
353 PF00282 Pyridoxal_deC: Pyrido 97.4 0.0034 7.3E-08 54.5 12.5 150 40-194 178-353 (373)
354 PLN02590 probable tyrosine dec 97.3 0.0041 8.9E-08 56.4 12.2 151 39-194 270-446 (539)
355 COG0076 GadB Glutamate decarbo 97.3 0.0087 1.9E-07 53.3 13.3 148 38-194 193-360 (460)
356 PF03841 SelA: L-seryl-tRNA se 97.2 0.0011 2.3E-08 57.0 6.5 122 39-172 125-259 (367)
357 PRK13578 ornithine decarboxyla 97.1 0.0022 4.8E-08 59.8 8.8 144 41-192 263-435 (720)
358 PRK05355 3-phosphoserine/phosp 97.1 0.004 8.6E-08 53.7 9.6 111 66-195 152-281 (360)
359 TIGR01364 serC_1 phosphoserine 97.0 0.0064 1.4E-07 52.2 10.1 103 83-195 149-270 (349)
360 cd00611 PSAT_like Phosphoserin 97.0 0.0085 1.8E-07 51.4 10.1 122 55-195 138-278 (355)
361 PRK15399 lysine decarboxylase 96.9 0.01 2.2E-07 55.4 10.9 145 41-194 283-441 (713)
362 KOG0258|consensus 96.5 0.0061 1.3E-07 52.7 6.0 153 40-195 200-382 (475)
363 PRK15400 lysine decarboxylase 96.3 0.011 2.3E-07 55.3 6.5 142 40-194 282-441 (714)
364 COG3033 TnaA Tryptophanase [Am 96.0 0.14 3E-06 44.2 11.3 58 39-98 170-228 (471)
365 PF12897 Aminotran_MocR: Alani 95.3 0.35 7.6E-06 42.1 11.4 145 40-189 160-317 (425)
366 TIGR01365 serC_2 phosphoserine 95.1 0.098 2.1E-06 45.5 7.7 121 55-195 130-282 (374)
367 COG3844 Kynureninase [Amino ac 94.8 0.58 1.3E-05 40.0 11.0 131 54-193 165-323 (407)
368 PLN02452 phosphoserine transam 94.8 0.27 5.9E-06 42.5 9.5 97 90-194 171-284 (365)
369 PF05889 SLA_LP_auto_ag: Solub 94.6 0.65 1.4E-05 40.5 11.2 55 40-99 141-195 (389)
370 PRK12462 phosphoserine aminotr 94.6 0.42 9.1E-06 41.4 10.1 101 84-194 163-283 (364)
371 TIGR03811 tyr_de_CO2_Ent tyros 94.6 0.42 9E-06 44.2 10.5 152 39-194 261-474 (608)
372 KOG2467|consensus 94.2 0.83 1.8E-05 39.6 10.8 140 40-194 178-339 (477)
373 PF06838 Met_gamma_lyase: Meth 94.2 0.64 1.4E-05 40.3 10.0 98 40-148 144-247 (403)
374 KOG1412|consensus 94.0 0.99 2.1E-05 38.4 10.7 149 40-194 165-338 (410)
375 COG1982 LdcC Arginine/lysine/o 94.0 0.45 9.7E-06 43.3 9.3 91 40-139 153-246 (557)
376 KOG0629|consensus 93.9 0.14 3E-06 45.0 5.6 95 40-141 237-337 (510)
377 COG1003 GcvP Glycine cleavage 93.0 1.6 3.6E-05 38.6 10.8 144 38-193 192-362 (496)
378 PLN02414 glycine dehydrogenase 92.5 2.3 5E-05 41.7 12.1 81 55-146 234-320 (993)
379 PRK05367 glycine dehydrogenase 91.3 3.5 7.5E-05 40.3 11.9 82 55-147 206-293 (954)
380 COG0403 GcvP Glycine cleavage 91.1 4.2 9.1E-05 35.9 11.0 137 40-194 200-377 (450)
381 PF02347 GDC-P: Glycine cleava 90.7 5.8 0.00013 35.2 11.8 130 54-194 196-363 (429)
382 smart00642 Aamy Alpha-amylase 88.8 2.5 5.3E-05 32.4 7.2 47 55-101 32-95 (166)
383 PF13481 AAA_25: AAA domain; P 88.0 1.4 3E-05 33.8 5.5 54 38-94 127-184 (193)
384 PF04864 Alliinase_C: Allinase 86.2 1.5 3.3E-05 37.6 5.0 83 84-172 157-243 (363)
385 KOG0628|consensus 86.1 1 2.2E-05 40.1 3.9 58 41-101 220-277 (511)
386 KOG3846|consensus 85.1 7.9 0.00017 33.1 8.6 56 40-102 201-256 (465)
387 KOG1411|consensus 84.9 6.3 0.00014 34.1 8.0 135 58-194 200-358 (427)
388 KOG2040|consensus 82.8 8.9 0.00019 36.0 8.5 144 39-193 666-834 (1001)
389 cd00984 DnaB_C DnaB helicase C 80.5 4.4 9.6E-05 32.3 5.4 55 40-94 108-168 (242)
390 COG1105 FruK Fructose-1-phosph 77.9 11 0.00025 31.9 7.2 59 35-99 111-169 (310)
391 PF13167 GTP-bdg_N: GTP-bindin 75.5 24 0.00053 24.5 7.7 62 36-99 6-68 (95)
392 cd01123 Rad51_DMC1_radA Rad51_ 75.3 6.3 0.00014 31.2 4.9 58 39-99 102-171 (235)
393 KOG1383|consensus 74.9 51 0.0011 29.6 10.6 133 55-195 218-373 (491)
394 PF07894 DUF1669: Protein of u 74.2 16 0.00035 30.6 7.0 49 40-99 136-186 (284)
395 COG4100 Cystathionine beta-lya 72.6 25 0.00054 30.1 7.7 97 40-147 155-257 (416)
396 COG3598 RepA RecA-family ATPas 70.5 16 0.00034 31.6 6.2 53 38-94 181-237 (402)
397 cd01121 Sms Sms (bacterial rad 68.8 11 0.00024 32.8 5.1 50 40-93 147-204 (372)
398 COG1932 SerC Phosphoserine ami 68.6 26 0.00057 30.4 7.2 73 119-193 192-284 (365)
399 cd01821 Rhamnogalacturan_acety 68.4 18 0.0004 27.7 6.0 57 36-93 89-150 (198)
400 COG0296 GlgB 1,4-alpha-glucan 68.2 7.7 0.00017 36.1 4.2 33 74-106 212-244 (628)
401 COG0062 Uncharacterized conser 66.6 11 0.00024 30.0 4.4 64 56-124 119-184 (203)
402 cd01122 GP4d_helicase GP4d_hel 65.5 9.5 0.00021 31.0 4.0 39 55-93 140-185 (271)
403 COG1066 Sms Predicted ATP-depe 64.6 14 0.0003 32.8 4.9 51 38-92 155-213 (456)
404 PRK12566 glycine dehydrogenase 64.6 1.1E+02 0.0024 30.2 11.2 81 54-146 207-294 (954)
405 COG0352 ThiE Thiamine monophos 64.4 21 0.00045 28.6 5.6 48 40-96 24-72 (211)
406 PF00128 Alpha-amylase: Alpha 63.8 9.3 0.0002 31.0 3.7 27 75-101 51-77 (316)
407 TIGR00461 gcvP glycine dehydro 63.0 1.2E+02 0.0026 29.9 11.3 81 55-146 194-280 (939)
408 cd01393 recA_like RecA is a b 62.9 17 0.00038 28.5 5.0 41 54-94 113-164 (226)
409 PRK04301 radA DNA repair and r 62.4 27 0.00058 29.4 6.3 59 38-99 184-254 (317)
410 TIGR02238 recomb_DMC1 meiotic 61.3 26 0.00056 29.7 5.9 48 54-101 190-249 (313)
411 PF03796 DnaB_C: DnaB-like hel 61.0 19 0.00041 29.2 5.0 55 40-94 114-175 (259)
412 cd07571 ALP_N-acyl_transferase 60.7 37 0.00081 27.7 6.7 55 38-94 23-77 (270)
413 PF08423 Rad51: Rad51; InterP 60.7 27 0.00058 28.6 5.8 60 37-100 119-190 (256)
414 KOG3843|consensus 59.4 19 0.00041 30.2 4.6 59 36-99 139-197 (432)
415 PF03853 YjeF_N: YjeF-related 58.8 11 0.00024 28.7 3.1 45 57-102 100-144 (169)
416 PRK11823 DNA repair protein Ra 58.0 27 0.00057 31.2 5.7 51 40-94 145-203 (446)
417 PF12310 Elf-1_N: Transcriptio 57.2 11 0.00024 26.9 2.5 33 55-103 30-62 (108)
418 TIGR00416 sms DNA repair prote 56.8 29 0.00063 31.0 5.8 50 40-93 159-216 (454)
419 TIGR00665 DnaB replicative DNA 56.6 21 0.00045 31.4 4.8 40 55-94 305-350 (434)
420 cd01822 Lysophospholipase_L1_l 55.7 37 0.0008 25.1 5.5 18 76-93 122-139 (177)
421 COG0648 Nfo Endonuclease IV [D 55.5 35 0.00076 28.6 5.6 63 36-99 116-179 (280)
422 COG2159 Predicted metal-depend 55.2 50 0.0011 27.7 6.6 58 38-105 113-170 (293)
423 PF13872 AAA_34: P-loop contai 54.8 9.1 0.0002 32.4 2.1 26 75-100 158-184 (303)
424 PF13401 AAA_22: AAA domain; P 54.5 15 0.00033 25.8 3.0 27 74-101 72-99 (131)
425 cd01834 SGNH_hydrolase_like_2 53.6 54 0.0012 24.4 6.2 57 36-93 84-151 (191)
426 TIGR02810 agaZ_gatZ D-tagatose 53.0 79 0.0017 28.0 7.6 66 33-100 190-260 (420)
427 TIGR02236 recomb_radA DNA repa 53.0 45 0.00097 27.8 6.1 60 39-100 178-249 (310)
428 cd07567 biotinidase_like bioti 52.9 44 0.00095 28.1 5.9 19 76-94 88-106 (299)
429 TIGR01211 ELP3 histone acetylt 52.7 97 0.0021 28.4 8.4 78 5-88 75-164 (522)
430 PRK09441 cytoplasmic alpha-amy 52.3 20 0.00043 32.1 4.0 29 74-102 79-107 (479)
431 TIGR00197 yjeF_nterm yjeF N-te 51.9 27 0.00058 27.6 4.3 45 57-102 115-159 (205)
432 cd01125 repA Hexameric Replica 51.5 71 0.0015 25.5 6.8 40 55-94 111-154 (239)
433 cd01394 radB RadB. The archaea 51.4 42 0.00091 26.2 5.4 45 55-99 103-159 (218)
434 KOG1434|consensus 51.4 63 0.0014 27.1 6.3 67 34-103 193-271 (335)
435 TIGR02237 recomb_radB DNA repa 51.1 47 0.001 25.7 5.6 56 40-99 86-151 (209)
436 KOG0352|consensus 51.1 65 0.0014 29.0 6.7 56 54-124 112-168 (641)
437 PLN03186 DNA repair protein RA 49.8 39 0.00085 29.0 5.2 46 54-99 217-274 (342)
438 PRK15458 tagatose 6-phosphate 49.8 94 0.002 27.7 7.5 66 33-100 194-264 (426)
439 TIGR02012 tigrfam_recA protein 49.5 54 0.0012 28.0 6.0 59 38-100 120-194 (321)
440 PRK09505 malS alpha-amylase; R 48.3 54 0.0012 31.0 6.3 30 74-103 290-319 (683)
441 TIGR02403 trehalose_treC alpha 48.0 55 0.0012 29.9 6.2 46 55-100 40-99 (543)
442 PLN03187 meiotic recombination 47.9 62 0.0013 27.9 6.2 58 38-99 208-277 (344)
443 PF05913 DUF871: Bacterial pro 46.3 36 0.00077 29.5 4.5 56 40-97 13-68 (357)
444 TIGR02402 trehalose_TreZ malto 46.1 35 0.00076 31.2 4.6 51 55-105 124-189 (542)
445 PF13989 YejG: YejG-like prote 46.0 57 0.0012 23.0 4.6 58 2-63 9-74 (106)
446 PLN03244 alpha-amylase; Provis 46.0 31 0.00067 33.3 4.3 31 74-104 439-469 (872)
447 PRK05409 hypothetical protein; 45.4 30 0.00065 29.0 3.8 39 59-97 58-97 (281)
448 cd07019 S49_SppA_1 Signal pept 45.3 50 0.0011 26.0 4.9 33 40-73 23-55 (211)
449 PF08543 Phos_pyr_kin: Phospho 44.6 34 0.00074 27.6 3.9 18 176-193 216-233 (246)
450 cd07576 R-amidase_like Pseudom 44.6 61 0.0013 25.8 5.4 55 38-94 16-80 (254)
451 PRK08760 replicative DNA helic 44.4 48 0.001 29.9 5.1 40 55-94 339-384 (476)
452 PRK09361 radB DNA repair and r 44.3 66 0.0014 25.2 5.5 45 55-99 107-163 (225)
453 TIGR02239 recomb_RAD51 DNA rep 44.1 53 0.0011 27.8 5.1 46 54-99 190-247 (316)
454 PRK09354 recA recombinase A; P 44.0 77 0.0017 27.4 6.1 58 38-99 125-198 (349)
455 cd01840 SGNH_hydrolase_yrhL_li 43.8 91 0.002 22.8 5.9 50 40-95 66-115 (150)
456 PF13472 Lipase_GDSL_2: GDSL-l 43.7 76 0.0017 22.8 5.5 57 35-93 83-147 (179)
457 TIGR03600 phage_DnaB phage rep 42.9 47 0.001 29.1 4.8 40 55-94 305-349 (421)
458 cd00983 recA RecA is a bacter 42.7 75 0.0016 27.2 5.8 60 38-101 120-195 (325)
459 PRK10933 trehalose-6-phosphate 42.2 72 0.0016 29.3 6.0 61 40-101 32-106 (551)
460 cd01828 sialate_O-acetylestera 42.1 86 0.0019 23.1 5.6 57 37-93 68-128 (169)
461 PF04909 Amidohydro_2: Amidohy 41.9 70 0.0015 25.3 5.4 54 36-95 83-136 (273)
462 TIGR02100 glgX_debranch glycog 41.8 43 0.00094 31.7 4.6 29 74-102 243-271 (688)
463 COG3155 ElbB Uncharacterized p 41.6 21 0.00046 27.5 2.1 42 115-156 112-154 (217)
464 PRK05973 replicative DNA helic 41.1 65 0.0014 26.2 5.0 71 56-127 148-224 (237)
465 PF03652 UPF0081: Uncharacteri 40.8 1.4E+02 0.0031 21.8 7.1 57 39-99 39-98 (135)
466 PTZ00035 Rad51 protein; Provis 40.4 78 0.0017 27.1 5.6 47 54-100 212-270 (337)
467 TIGR03156 GTP_HflX GTP-binding 40.0 1.2E+02 0.0026 26.1 6.8 60 38-99 17-77 (351)
468 PRK12313 glycogen branching en 39.3 47 0.001 31.0 4.4 48 55-102 184-246 (633)
469 PRK09165 replicative DNA helic 38.8 72 0.0016 28.9 5.4 40 55-94 341-388 (497)
470 PRK09319 bifunctional 3,4-dihy 38.6 47 0.001 30.6 4.2 35 55-94 161-195 (555)
471 PLN02978 pyridoxal kinase 37.9 73 0.0016 26.7 5.0 41 58-98 119-161 (308)
472 PRK00014 ribB 3,4-dihydroxy-2- 37.8 57 0.0012 26.5 4.1 40 55-99 172-212 (230)
473 PRK09461 ansA cytoplasmic aspa 37.7 1E+02 0.0022 26.3 6.0 45 41-93 224-268 (335)
474 PRK05748 replicative DNA helic 37.5 70 0.0015 28.3 5.1 40 55-94 314-360 (448)
475 PF00926 DHBP_synthase: 3,4-di 37.4 58 0.0013 25.7 4.1 35 55-94 152-186 (194)
476 cd07581 nitrilase_3 Uncharacte 37.2 83 0.0018 25.1 5.1 19 76-94 61-79 (255)
477 COG0108 RibB 3,4-dihydroxy-2-b 37.1 51 0.0011 26.2 3.7 34 55-93 156-189 (203)
478 PTZ00344 pyridoxal kinase; Pro 36.9 75 0.0016 26.4 4.9 25 74-98 88-117 (296)
479 cd04501 SGNH_hydrolase_like_4 36.8 91 0.002 23.2 5.1 14 79-92 128-141 (183)
480 PRK09519 recA DNA recombinatio 36.7 1.3E+02 0.0028 29.1 6.8 59 39-101 126-200 (790)
481 KOG3974|consensus 36.4 81 0.0018 26.4 4.8 47 40-95 92-138 (306)
482 PRK01792 ribB 3,4-dihydroxy-2- 36.1 65 0.0014 25.9 4.1 34 55-93 167-200 (214)
483 PF07905 PucR: Purine cataboli 36.0 1.6E+02 0.0035 21.0 6.4 33 54-93 71-103 (123)
484 cd01827 sialate_O-acetylestera 35.9 1.3E+02 0.0027 22.5 5.8 57 37-93 89-152 (188)
485 TIGR01515 branching_enzym alph 35.9 2.1E+02 0.0045 26.7 8.1 49 55-103 170-233 (613)
486 cd07018 S49_SppA_67K_type Sign 35.3 1.7E+02 0.0037 23.1 6.6 52 40-93 31-82 (222)
487 cd01020 TroA_b Metal binding p 34.9 1E+02 0.0022 25.2 5.3 45 36-92 191-235 (264)
488 PLN03050 pyridoxine (pyridoxam 34.8 69 0.0015 26.2 4.3 86 57-147 135-231 (246)
489 PRK08883 ribulose-phosphate 3- 34.5 2E+02 0.0042 23.0 6.8 9 40-48 119-127 (220)
490 PHA03108 poly(A) polymerase sm 34.3 1.6E+02 0.0034 24.8 6.2 54 40-95 75-138 (300)
491 PRK05402 glycogen branching en 34.3 67 0.0014 30.6 4.6 29 74-102 313-341 (726)
492 cd07579 nitrilase_1_R2 Second 34.2 97 0.0021 25.5 5.1 55 38-94 15-76 (279)
493 cd04823 ALAD_PBGS_aspartate_ri 33.9 1.2E+02 0.0026 25.9 5.6 59 38-101 55-121 (320)
494 PRK11835 hypothetical protein; 33.8 1E+02 0.0022 22.0 4.4 58 2-63 12-77 (114)
495 cd07578 nitrilase_1_R1 First n 33.8 1.3E+02 0.0029 24.1 5.8 54 39-94 18-83 (258)
496 PTZ00276 biotin/lipoate protei 33.7 57 0.0012 26.5 3.6 46 56-108 7-52 (245)
497 PF00150 Cellulase: Cellulase 33.5 50 0.0011 26.4 3.3 57 41-99 24-84 (281)
498 PRK09311 bifunctional 3,4-dihy 33.2 70 0.0015 28.2 4.3 38 55-97 158-196 (402)
499 cd07022 S49_Sppa_36K_type Sign 33.0 76 0.0016 25.0 4.2 45 40-85 27-71 (214)
500 TIGR00506 ribB 3,4-dihydroxy-2 32.9 79 0.0017 25.1 4.2 34 55-93 157-190 (199)
No 1
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-44 Score=311.51 Aligned_cols=175 Identities=39% Similarity=0.569 Sum_probs=154.8
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHH
Q psy13322 1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLR 79 (195)
Q Consensus 1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~ 79 (195)
|+||+||++|+... .+....+++.+++.+.+.. +..++||||+|||||++|.+++|++||+
T Consensus 185 Pyp~~yr~p~~~~~------------------~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~ 246 (447)
T COG0160 185 PYPNPYRCPFGIGG------------------EECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLK 246 (447)
T ss_pred cCCccccCcccCch------------------hhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHH
Confidence 68999999988410 1223445666777555432 1158999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchH
Q psy13322 80 RAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNP 159 (195)
Q Consensus 80 ~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p 159 (195)
+|+++|+|||+++|+||||+||||||+ +|+++++|+.|||+|+||++++|+|+|++++++++++ .....+.+||++||
T Consensus 247 ~l~~~~~~~gillI~DEVQtG~GRTG~-~fa~E~~gv~PDivt~aK~ig~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNp 324 (447)
T COG0160 247 ALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGVEPDIVTLAKSLGGGLPLSAVVGRAEIMD-WPPGGHGGTFGGNP 324 (447)
T ss_pred HHHHHHHHcCCEEEEeccccCCCcccc-chhhhhcCCCCCEEEecccccCCCceeEEeccHHhcc-cCCcccCCCCCcCH
Confidence 999999999999999999999999997 9999999999999999999999999999999999999 66677999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 160 VGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 160 ~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
++|+|++|+|++++++++.++..+++++|+++|+++
T Consensus 325 va~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l 360 (447)
T COG0160 325 VACAAALAVLDVIEEENLLERAAELGEYLRDRLEEL 360 (447)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999764
No 2
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-43 Score=296.21 Aligned_cols=150 Identities=43% Similarity=0.699 Sum_probs=143.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++++. ++++|||+|||||++|.++++++||+++++||++||++||+||||||+||||+ +|+++++|+.||
T Consensus 174 i~al~~ai~-----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk-~fA~e~~gV~PD 247 (404)
T COG4992 174 IEALEAAID-----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYGVEPD 247 (404)
T ss_pred HHHHHHHhc-----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccch-HHHHHHhCCCCC
Confidence 688898888 48999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
|+|++|++|||+|+|++++++.+.+.+....|++||++||++|+++.++|+++.++++.+++++.+++|+++|+++
T Consensus 248 I~tlaK~LgGG~PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~e~ll~~v~~~g~~~~~~L~~l 323 (404)
T COG4992 248 ILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEGLLENVREKGEYLLQRLREL 323 (404)
T ss_pred EEEeeccccCCccceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987888888888999999999999999999999999999999999999999999864
No 3
>KOG1404|consensus
Probab=100.00 E-value=2.6e-41 Score=282.73 Aligned_cols=176 Identities=56% Similarity=0.987 Sum_probs=165.2
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHH
Q psy13322 1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRR 80 (195)
Q Consensus 1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~ 80 (195)
|.|+.||++|++. +.||+-+++.++|++.+....+ ..+|++|.|||||.+|.+.+++.||++
T Consensus 176 ~~Pdp~r~~~~~~-----------------~~~e~~d~~a~~l~d~i~~~~~-~~vAafiaEtIqGvgG~v~~p~GYlka 237 (442)
T KOG1404|consen 176 MNPDPYRGIFGGS-----------------NEEEASDRYAKELEDLILYDGP-ETVAAFIAETIQGVGGIVELPPGYLKA 237 (442)
T ss_pred CCCCcccccCCCC-----------------chhhhHHHHHHHHHHHHHhcCC-CceeEEEeehhccCCccccCCchHHHH
Confidence 4699999999972 1367889999999999998777 489999999999999999999999999
Q ss_pred HHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccc-cccCCCchH
Q psy13322 81 AYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNP 159 (195)
Q Consensus 81 l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-~~~t~~~~p 159 (195)
+.++|+|+|.++|+||||+||||+| ++|+++..++.|||+|++|++|+|+|+|+++++++|++.+.+.. +.+||++||
T Consensus 238 ~~~~v~k~Ggl~IaDEVqtGfGRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP 316 (442)
T KOG1404|consen 238 AYKVVRKRGGLFIADEVQTGFGRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEIADVLNQKSSHFNTYGGNP 316 (442)
T ss_pred HHHHHHHcCCEEEehhhhhcccccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHHHHHHHhccccccccCCCc
Confidence 9999999999999999999999999 59999999999999999999999999999999999999998877 899999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 160 VGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 160 ~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
++|++++++|+++++++++++..+.+.+|++.|.++
T Consensus 317 ~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l 352 (442)
T KOG1404|consen 317 VACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAAL 352 (442)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999763
No 4
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=6e-41 Score=289.41 Aligned_cols=158 Identities=33% Similarity=0.561 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGV-SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~ 112 (195)
++ .+++++|+++|.++++ ++|||||+|||.+. +|++++++.||++++++|++||++||+|||.|||||||+ +|+++
T Consensus 195 ~~-~~~a~~le~~i~~~g~-~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~-~FA~e 271 (449)
T COG0161 195 EF-AEAADELEALILEHGP-ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK-MFACE 271 (449)
T ss_pred HH-HHHHHHHHHHHHhcCc-ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCch-hhhhh
Confidence 44 5889999999999987 59999999998776 999999999999999999999999999999999999998 89999
Q ss_pred ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322 113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA 186 (195)
Q Consensus 113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~ 186 (195)
++|++|||+|+||++++|| |+|++++++++.+.+... .|++||++||++|+||+++|++++++++++++++++.
T Consensus 272 ~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~ 351 (449)
T COG0161 272 HAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGA 351 (449)
T ss_pred hcCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999996 999999999999988764 3899999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy13322 187 QIIGYLRV 194 (195)
Q Consensus 187 ~l~~~L~~ 194 (195)
+|.++|++
T Consensus 352 ~l~~~L~~ 359 (449)
T COG0161 352 YLQAGLQA 359 (449)
T ss_pred HHHHHHHH
Confidence 99999985
No 5
>PRK05965 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=289.31 Aligned_cols=160 Identities=31% Similarity=0.466 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
+....+++.+++.|++..+ +++||||+|||||.+|.++++++||++|+++|++||++||+|||++||||+|+ +|++++
T Consensus 195 ~~~~~~~~~l~~~i~~~~~-~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~ 272 (459)
T PRK05965 195 AIIAASVAALRAKVAELGA-DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEA 272 (459)
T ss_pred HHHHHHHHHHHHHHHhcCC-CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhh
Confidence 3456778899999986544 58999999999999999999999999999999999999999999999999998 889999
Q ss_pred cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
+|++|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++
T Consensus 273 ~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g 352 (459)
T PRK05965 273 EGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAG 352 (459)
T ss_pred cCCCCCeEEechhhccCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999995 99999999999988753 2478899999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy13322 186 AQIIGYLRVV 195 (195)
Q Consensus 186 ~~l~~~L~~l 195 (195)
++|.+.|+++
T Consensus 353 ~~l~~~l~~l 362 (459)
T PRK05965 353 PRFAAGLDAL 362 (459)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 6
>PRK07482 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-39 Score=282.68 Aligned_cols=157 Identities=31% Similarity=0.495 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.|++++.+..+ +++||||+|||+|.+|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus 202 ~~~~~~~l~~~~~~~~~-~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~g 279 (461)
T PRK07482 202 SAYCADELEELILAEGP-DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS-MFGSDHYG 279 (461)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc-hhhHHhcC
Confidence 45678999998865433 58999999999999999999999999999999999999999999999999998 88999999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++
T Consensus 280 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~ 359 (461)
T PRK07482 280 IEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAY 359 (461)
T ss_pred CCCCEEEEccccccCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999996 99999999999988752 237889999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
|.+.|++
T Consensus 360 l~~~L~~ 366 (461)
T PRK07482 360 FRARLRA 366 (461)
T ss_pred HHHHHHH
Confidence 9999975
No 7
>PRK07678 aminotransferase; Validated
Probab=100.00 E-value=6e-39 Score=282.21 Aligned_cols=157 Identities=34% Similarity=0.578 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.++++|+...+ +++||||+|||+|.+|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus 195 ~~~~~~~l~~~~~~~~~-~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g 272 (451)
T PRK07678 195 DLECVKEIDRVMTWELS-ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG 272 (451)
T ss_pred HHHHHHHHHHHHHhcCC-CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC
Confidence 45567788888874433 58999999999999999999999999999999999999999999999999998 88899999
Q ss_pred CCcchhhhccccCCC-CceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l 188 (195)
++|||+|+||+++|| +|+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++|
T Consensus 273 v~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l 352 (451)
T PRK07678 273 VKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELL 352 (451)
T ss_pred CCCCEEEeecccccCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999988 599999999999998864 2378999999999999999999998889999999999999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
++.|++
T Consensus 353 ~~~l~~ 358 (451)
T PRK07678 353 LEQLKE 358 (451)
T ss_pred HHHHHH
Confidence 999864
No 8
>PRK06062 hypothetical protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=281.94 Aligned_cols=158 Identities=29% Similarity=0.543 Sum_probs=143.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...++++.|+++|+...+ +++|+||+|||||++|+++++++||++|+++|++||++||+||||+||||+|. +|+++++
T Consensus 195 ~~~~~~~~le~~l~~~~~-~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~~~~ 272 (451)
T PRK06062 195 ECERALAHLERVIELEGP-STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHF 272 (451)
T ss_pred HHHHHHHHHHHHHHhcCC-CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH-HHHHHhc
Confidence 345678999999975433 58999999999999999999999999999999999999999999999999998 7888999
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH-HHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS-AQIIG 190 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~-~~l~~ 190 (195)
|+.|||+|+||++++|+ |+|++++++++++.+... .+++||++||++|++++++|++++++++.+++++++ ++|++
T Consensus 273 gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~ 352 (451)
T PRK06062 273 GVVPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGP 352 (451)
T ss_pred CCCCCeeeechhhhcCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999996 999999999999988643 477899999999999999999998888999999999 58888
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 353 ~L~~ 356 (451)
T PRK06062 353 GLRE 356 (451)
T ss_pred HHHH
Confidence 8875
No 9
>PRK07481 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=278.92 Aligned_cols=158 Identities=35% Similarity=0.578 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.+++.|....+ +++||||+|||||++|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++++
T Consensus 195 ~~~~~~~le~~i~~~~~-~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g 272 (449)
T PRK07481 195 ARICARLLEREIAFQGP-DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSRGWG 272 (449)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch-hhHhhhcC
Confidence 45567778888864333 58999999999999999999999999999999999999999999999999998 78899999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++|||+|+||+++||+ |+|++++++++++.+... .+++||++||++|+|++++|++++++++.+++++++++
T Consensus 273 v~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~ 352 (449)
T PRK07481 273 VKPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAY 352 (449)
T ss_pred CCCCEEEEeecccCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999995 999999999999988532 47889999999999999999999989999999999999
Q ss_pred HHHHhhcC
Q psy13322 188 IIGYLRVV 195 (195)
Q Consensus 188 l~~~L~~l 195 (195)
|++.|+++
T Consensus 353 l~~~L~~l 360 (449)
T PRK07481 353 LLEGLQPL 360 (449)
T ss_pred HHHHHHHH
Confidence 99999763
No 10
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-38 Score=281.10 Aligned_cols=158 Identities=30% Similarity=0.443 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.+++++++... .+++||||+|||||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus 211 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~ 289 (464)
T PRK06938 211 VRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHA 289 (464)
T ss_pred HHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhc
Confidence 34568889999875421 137999999999999999999999999999999999999999999999999998 8899999
Q ss_pred CCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++|||+|+||+++||+|+|++++++++ +.+....+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 290 gv~PDiv~~gKglggG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~ 368 (464)
T PRK06938 290 GIIPDVVVLSKAIGGSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQ 368 (464)
T ss_pred CCCCCEEEeeccccCCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886 666555688999999999999999999999999999999999999999976
Q ss_pred C
Q psy13322 195 V 195 (195)
Q Consensus 195 l 195 (195)
+
T Consensus 369 l 369 (464)
T PRK06938 369 L 369 (464)
T ss_pred H
Confidence 3
No 11
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=100.00 E-value=1.9e-38 Score=282.01 Aligned_cols=158 Identities=30% Similarity=0.565 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...++++|++++.+..+ +++||||+|||+|++|+++++++||++|+++|++||++||+|||||||||+|+ +|+++++|
T Consensus 242 ~~~~~~~le~~l~~~~~-~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g 319 (504)
T PLN02760 242 STRLADNLENLILKEGP-ETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN 319 (504)
T ss_pred HHHHHHHHHHHHHhcCC-CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC
Confidence 34556788888764433 58999999999999999999999999999999999999999999999999998 78899999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++|||+|+||++++|+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++
T Consensus 320 v~PDivtlgK~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~ 399 (504)
T PLN02760 320 IKPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPR 399 (504)
T ss_pred CCCcEEEecccccCCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999985 99999999999998864 247899999999999999999999888999999999999
Q ss_pred HHHHhhcC
Q psy13322 188 IIGYLRVV 195 (195)
Q Consensus 188 l~~~L~~l 195 (195)
|++.|+++
T Consensus 400 l~~~L~~l 407 (504)
T PLN02760 400 FQDGIKAF 407 (504)
T ss_pred HHHHHHHH
Confidence 99999763
No 12
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.1e-38 Score=277.69 Aligned_cols=159 Identities=26% Similarity=0.464 Sum_probs=145.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~ 112 (195)
+...++++.++++|+++. +++||||+|| +||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++
T Consensus 202 ~~~~~~~~~l~~~l~~~~--~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~ 278 (453)
T PRK06943 202 DVAARALADVRRLFAERA--GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACE 278 (453)
T ss_pred HHHHHHHHHHHHHHHhCC--CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHH
Confidence 344577899999988653 5899999999 5999999999999999999999999999999999999999998 88999
Q ss_pred ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
++|++|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++
T Consensus 279 ~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G 358 (453)
T PRK06943 279 QAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKS 358 (453)
T ss_pred hCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999995 99999999999998753 1378899999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy13322 186 AQIIGYLRVV 195 (195)
Q Consensus 186 ~~l~~~L~~l 195 (195)
++|++.|+++
T Consensus 359 ~~l~~~L~~l 368 (453)
T PRK06943 359 ARLRAALAPL 368 (453)
T ss_pred HHHHHHHHHH
Confidence 9999999763
No 13
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.1e-38 Score=278.54 Aligned_cols=159 Identities=26% Similarity=0.517 Sum_probs=145.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~ 112 (195)
+...++++.+++.+.++. +++||||+|| |||.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++
T Consensus 195 ~~~~~~l~~le~~~~~~~--~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~ 271 (466)
T PRK07030 195 EHSRRMFAHMEQTLAEHH--DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACE 271 (466)
T ss_pred HHHHHHHHHHHHHHHhCC--CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHH
Confidence 445677899999998653 5999999999 7999999999999999999999999999999999999999998 88999
Q ss_pred ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322 113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV 184 (195)
Q Consensus 113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~ 184 (195)
++|++|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.++++++
T Consensus 272 ~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~ 351 (466)
T PRK07030 272 QAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRAL 351 (466)
T ss_pred hcCCCCCEEeeehhccCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999995 99999999999988742 247899999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q psy13322 185 SAQIIGYLRVV 195 (195)
Q Consensus 185 ~~~l~~~L~~l 195 (195)
+++|++.|+++
T Consensus 352 G~~l~~~L~~l 362 (466)
T PRK07030 352 ARRMAEATAHL 362 (466)
T ss_pred HHHHHHHHHHH
Confidence 99999999763
No 14
>PRK07483 hypothetical protein; Provisional
Probab=100.00 E-value=3.6e-38 Score=276.69 Aligned_cols=157 Identities=31% Similarity=0.508 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQG-VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s-~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.|++.+....+ +++||||+||||| .+|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus 181 ~~~~~~~l~~~~~~~~~-~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~ 258 (443)
T PRK07483 181 GQRLADELEAKILELGP-DTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEED 258 (443)
T ss_pred HHHHHHHHHHHHHhcCC-CceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhc
Confidence 45567888887765433 5899999999998 5799999999999999999999999999999999999998 8899999
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
+++|||+|+||+++||+ |+|++++++++++.+... .+++||++||++|++++++|++++++++.+++++++++|+
T Consensus 259 gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~ 338 (443)
T PRK07483 259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLR 338 (443)
T ss_pred CCCCCeeeehhhhccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999996 999999999999988642 3788999999999999999999999999999999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 339 ~~L~~ 343 (443)
T PRK07483 339 ARLRE 343 (443)
T ss_pred HHHHH
Confidence 99975
No 15
>PRK12403 putative aminotransferase; Provisional
Probab=100.00 E-value=5.6e-38 Score=276.61 Aligned_cols=157 Identities=30% Similarity=0.498 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...++++|++.+.+..+ +++|+||+|||||++|++.++++||++|+++|++||++||+||||+||||+|+ +|+++++|
T Consensus 204 ~~~~~~~le~~~~~~~~-~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~e~~g 281 (460)
T PRK12403 204 GRRAALQLEEKILELGA-ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFG 281 (460)
T ss_pred HHHHHHHHHHHHHHhCC-CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhhhhhcC
Confidence 44567788777754433 58999999999999999999999999999999999999999999999999998 78889999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK-QVSAQII 189 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~-~~~~~l~ 189 (195)
++|||+|+||++++|+ |+|++++++++++.+... .+++||++||++|+|++++|++++++++.++++ +++++|+
T Consensus 282 v~PDiv~~gK~lggG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~ 361 (460)
T PRK12403 282 FEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQ 361 (460)
T ss_pred CCCCeEEEcccccccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999999999996 999999999999988532 267899999999999999999998888999996 9999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 362 ~~L~~ 366 (460)
T PRK12403 362 RCLRE 366 (460)
T ss_pred HHHHH
Confidence 99874
No 16
>PRK07480 putative aminotransferase; Validated
Probab=100.00 E-value=5.7e-38 Score=276.26 Aligned_cols=157 Identities=32% Similarity=0.502 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.|++.+.+..+ +++||||+|||||++|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++|
T Consensus 201 ~~~~~~~l~~~~~~~~~-~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g 278 (456)
T PRK07480 201 GLAAARQLEAKILELGA-DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE-WFGSQHFG 278 (456)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhhhhhcC
Confidence 34456888776655444 58999999999999999999999999999999999999999999999999998 88899999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhh--c--cccccCCCchHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLT--K--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNC-KQVSAQII 189 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~--~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l-~~~~~~l~ 189 (195)
++|||+|+||+++||+ |+|++++++++++.+. . ..+++||++||++|+|++++|++++++++.+++ ++++++|+
T Consensus 279 v~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~ 358 (456)
T PRK07480 279 IKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQ 358 (456)
T ss_pred CCCCeeeeehhhccCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999999996 9999999999999883 2 247899999999999999999999988999999 69999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 359 ~~l~~ 363 (456)
T PRK07480 359 KRLRE 363 (456)
T ss_pred HHHHH
Confidence 99875
No 17
>PRK07036 hypothetical protein; Provisional
Probab=100.00 E-value=1e-37 Score=275.24 Aligned_cols=158 Identities=32% Similarity=0.537 Sum_probs=142.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-c
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-M 113 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-~ 113 (195)
+...+++.+++.+....+ +++||||+|||+|++|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++ +
T Consensus 201 ~~~~~~~~~~~~i~~~~~-~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~ 278 (466)
T PRK07036 201 FCDFLVDEFEDKILSLGA-DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH-FFASEAV 278 (466)
T ss_pred HHHHHHHHHHHHHHHcCC-CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch-hhhhhhh
Confidence 345567788888775433 58999999999999999999999999999999999999999999999999998 78887 6
Q ss_pred cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
+|+.|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++
T Consensus 279 ~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g 358 (466)
T PRK07036 279 FGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVG 358 (466)
T ss_pred cCCCCCEEEEccccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 899999999999999995 99999999999998753 2367899999999999999999998889999999999
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
++|++.|++
T Consensus 359 ~~l~~~L~~ 367 (466)
T PRK07036 359 PYFEERLAS 367 (466)
T ss_pred HHHHHHHHH
Confidence 999999975
No 18
>KOG1402|consensus
Probab=100.00 E-value=3.6e-38 Score=259.22 Aligned_cols=151 Identities=36% Similarity=0.579 Sum_probs=145.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|+..|+. +++|++|+|||||++|.++|+++||+++++||++|++++|+||||+|+||+|+ +++.++.+++||
T Consensus 196 ~eale~~l~~----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~env~PD 270 (427)
T KOG1402|consen 196 AEALEVALKS----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYENVRPD 270 (427)
T ss_pred HHHHHHHhcC----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhhcCCC
Confidence 7889999885 48999999999999999999999999999999999999999999999999998 889998899999
Q ss_pred hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
++.+||+|+|| +|++++++++++|-.+....|++||++||++|+++.|+|+++.++++.++..+.|..|+.+|+++
T Consensus 271 ivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalevi~eekL~era~~lG~~l~~~L~~l 347 (427)
T KOG1402|consen 271 IVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEVIVEEKLVERAAKLGEILRDQLNKL 347 (427)
T ss_pred eEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 69999999999999998888999999999999999999999999999999999999999999875
No 19
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=8.5e-38 Score=275.95 Aligned_cols=158 Identities=30% Similarity=0.547 Sum_probs=143.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~ 112 (195)
+....+++.+++.+++.. +++||||+|| ++|.+|.++++++||++|+++|++||++||+|||+|||||+|+ +|+++
T Consensus 217 ~~~~~~~~~l~~~~~~~~--~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e 293 (472)
T PRK08742 217 DYALQAADALQALFEQSP--GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACE 293 (472)
T ss_pred HHHHHHHHHHHHHHHhCC--CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHH
Confidence 334567889999887543 5899999999 6999999999999999999999999999999999999999998 88999
Q ss_pred ccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 113 MHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 113 ~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
++|+.|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++
T Consensus 294 ~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g 373 (472)
T PRK08742 294 QAGVMPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTA 373 (472)
T ss_pred hcCCCCCEEEEcccccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 9999999999999999995 99999999999988752 2378899999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
++|++.++.
T Consensus 374 ~~l~~~~~~ 382 (472)
T PRK08742 374 ARMTQLAAQ 382 (472)
T ss_pred HHHHHHHHH
Confidence 999877654
No 20
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=5.6e-38 Score=276.49 Aligned_cols=140 Identities=33% Similarity=0.549 Sum_probs=131.3
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM 133 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~ 133 (195)
+++||||+|||||++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|++|||+|+||+++||+|+
T Consensus 224 ~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~gv~PDivt~gK~l~gG~Pi 302 (459)
T PRK06931 224 RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEPDIIVMSKAVGGGLPL 302 (459)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcCCCCCEEEecccccCCcce
Confidence 47999999999999999999999999999999999999999999999999998 88999999999999999999999999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
|++++++++ +.+....+.+||++||++|++++++|++++++++.+++++++++|++.|+++
T Consensus 303 ~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l 363 (459)
T PRK06931 303 AVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAEL 363 (459)
T ss_pred eeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999988775 6665556889999999999999999999988899999999999999999763
No 21
>PRK06105 aminotransferase; Provisional
Probab=100.00 E-value=1.9e-37 Score=273.29 Aligned_cols=158 Identities=28% Similarity=0.497 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++++++++.+..+ +++||||+|||||++|+++++++||++|+++|++||+++|+||||+||||+|+ +|++++++
T Consensus 200 ~~~~~~~le~~~~~~~~-~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~ 277 (460)
T PRK06105 200 ATRLANELEALILAEGP-DTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG 277 (460)
T ss_pred HHHHHHHHHHHHHHcCC-CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcC
Confidence 44567888988875433 58999999999999999999999999999999999999999999999999998 88899999
Q ss_pred CCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++|||+|+||+++|| +|+|++++++++++.+... .|++||++||++|++++++|++++++++.+++++++++
T Consensus 278 v~PDi~~~gK~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~ 357 (460)
T PRK06105 278 IKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGAR 357 (460)
T ss_pred CCCCeeeeecccccCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999988 5999999999999987642 26789999999999999999999988999999999999
Q ss_pred HHHHhhcC
Q psy13322 188 IIGYLRVV 195 (195)
Q Consensus 188 l~~~L~~l 195 (195)
|++.|+++
T Consensus 358 l~~~L~~l 365 (460)
T PRK06105 358 LQARLRAL 365 (460)
T ss_pred HHHHHHHh
Confidence 99999864
No 22
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.4e-37 Score=274.09 Aligned_cols=158 Identities=33% Similarity=0.550 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
....+++.+++.|+++. +++||||+|| |+|.+|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++
T Consensus 205 ~~~~~~~~l~~~l~~~~--~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~ 281 (460)
T PRK06916 205 IVKKHLEELEELLKEKH--EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK-MFACEH 281 (460)
T ss_pred HHHHHHHHHHHHHHhCC--CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch-hhHHHh
Confidence 34567889999988653 5899999999 6999999999999999999999999999999999999999998 888999
Q ss_pred cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
+|++|||+|+||+++||+ |+|++++++++++.+.. ..+++||++||++|++++++|+.++++++.+++++++
T Consensus 282 ~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g 361 (460)
T PRK06916 282 ENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKT 361 (460)
T ss_pred cCCCCCeeeeehhhhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999999999999995 99999999999987742 2377899999999999999999998889999999999
Q ss_pred HHHHHHhhcC
Q psy13322 186 AQIIGYLRVV 195 (195)
Q Consensus 186 ~~l~~~L~~l 195 (195)
++|++.|+++
T Consensus 362 ~~l~~~l~~l 371 (460)
T PRK06916 362 EYVATQLEDL 371 (460)
T ss_pred HHHHHHHHHh
Confidence 9999999864
No 23
>PRK06148 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=290.63 Aligned_cols=160 Identities=46% Similarity=0.779 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.+++.++... ..+++||||+|||+|++|.++++++||++|+++|++||+++|+|||++||||+|+++|+++++
T Consensus 764 ~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~ 843 (1013)
T PRK06148 764 GRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQ 843 (1013)
T ss_pred HHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhc
Confidence 4556677777765321 115899999999999999999999999999999999999999999999999999657899999
Q ss_pred CCCcchhhhccccCCCCceEEEEecHHHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
|++|||+|+||++|||+|+|++++++++++.+.... +.+||++||++|+|++++|++++++++.+++++++++|++.|+
T Consensus 844 gv~PDivt~gK~lggG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~ 923 (1013)
T PRK06148 844 GVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLR 923 (1013)
T ss_pred CCCcceeeecccccCCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887653 7799999999999999999999989999999999999999997
Q ss_pred cC
Q psy13322 194 VV 195 (195)
Q Consensus 194 ~l 195 (195)
++
T Consensus 924 ~l 925 (1013)
T PRK06148 924 EL 925 (1013)
T ss_pred HH
Confidence 63
No 24
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.8e-37 Score=269.71 Aligned_cols=140 Identities=39% Similarity=0.620 Sum_probs=133.9
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM 133 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~ 133 (195)
+++||||+||++|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|++||++|+||++++|+|+
T Consensus 218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~gv~PDiv~~gK~l~~G~Pi 296 (443)
T PRK06058 218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEGIVPDLITTAKGIAGGLPL 296 (443)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcCCCCCEEEEcccccCCCcc
Confidence 58999999999999999999999999999999999999999999999999998 77889999999999999999999999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++++++++++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus 297 ~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 297 SAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRA 357 (443)
T ss_pred EEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999988777788999999999999999999998889999999999999999975
No 25
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=100.00 E-value=6.4e-37 Score=268.36 Aligned_cols=141 Identities=35% Similarity=0.564 Sum_probs=132.6
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCC-Cc
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FP 132 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G-~~ 132 (195)
+++|+||+|||+|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++|+.|||+|+||++|+| +|
T Consensus 223 ~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~PDivt~gK~lg~G~~P 301 (442)
T TIGR03372 223 DDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEGVQPDILCLAKALGGGVMP 301 (442)
T ss_pred CcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcCCCCCeeeehhhhcCCccc
Confidence 58999999999999999999999999999999999999999999999999998 88999999999999999999999 69
Q ss_pred eEEEEecHHHHHHhhc--cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 133 MGAVVTTTEIAQVLTK--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 133 ~g~v~~~~~i~~~l~~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++|++.|+++
T Consensus 302 igavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l 366 (442)
T TIGR03372 302 IGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQL 366 (442)
T ss_pred ceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998843 34789999999999999999999988899999999999999998753
No 26
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.2e-36 Score=267.16 Aligned_cols=160 Identities=29% Similarity=0.509 Sum_probs=144.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
+....+++.+++++++....+++|+||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ ++++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~-~~a~~~ 264 (445)
T PRK08593 186 NFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISH 264 (445)
T ss_pred HHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-HHHHHh
Confidence 3345667888888875422258999999999999999999999999999999999999999999999999998 778888
Q ss_pred cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++.|||+|+||++++|+|+|++++++++++.+....+.+|+++||++|+|++++|+.++++++.+++++++++|++.|+
T Consensus 265 ~gv~pDi~t~gK~l~~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~ 344 (445)
T PRK08593 265 FNITPDLMSFGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFD 344 (445)
T ss_pred cCCCCCEeeecccccCCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998865567889999999999999999999888999999999999999997
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 345 ~ 345 (445)
T PRK08593 345 Q 345 (445)
T ss_pred H
Confidence 5
No 27
>PRK06917 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=266.89 Aligned_cols=159 Identities=29% Similarity=0.446 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGV-SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
...++++.++++++++.+ +++||||+||+++. +|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++
T Consensus 180 ~~~~~~~~le~~i~~~~~-~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~-~~a~~~ 257 (447)
T PRK06917 180 CQLACATELETAIERIGA-EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA-MFAMEH 257 (447)
T ss_pred HHHHHHHHHHHHHHhcCC-CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc-hhhHHh
Confidence 345678889999887644 48999999999995 679999999999999999999999999999999999998 788899
Q ss_pred cCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l 188 (195)
++++|||+|+||++++|+ |+|++++++++++.+... .+++||++||++|+|++++|++++++++.+++++++++|
T Consensus 258 ~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l 337 (447)
T PRK06917 258 WGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYL 337 (447)
T ss_pred cCCCCCEEEeeehhccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 999999999999999996 999999999999988642 257899999999999999999998889999999999999
Q ss_pred HHHhhcC
Q psy13322 189 IGYLRVV 195 (195)
Q Consensus 189 ~~~L~~l 195 (195)
++.|+++
T Consensus 338 ~~~L~~l 344 (447)
T PRK06917 338 IKGLQKV 344 (447)
T ss_pred HHHHHHH
Confidence 9999763
No 28
>PRK06541 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-36 Score=266.60 Aligned_cols=159 Identities=30% Similarity=0.508 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
....+++.+++++++..+ +++|+||+|||+|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus 202 ~~~~~~~~l~~~l~~~~~-~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~ 279 (460)
T PRK06541 202 FGRWAADRIEEAIEFEGP-DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERF 279 (460)
T ss_pred HHHHHHHHHHHHHHhcCC-CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-hhhhhhc
Confidence 345678899999886433 58999999999999999999999999999999999999999999999999998 7788889
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
+++|||+|+||++++|| |+|++++++++++.+... .+.+|+++||+++++++++|+.++++++.+++++++++|+
T Consensus 280 gv~PDivt~gK~l~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~ 359 (460)
T PRK06541 280 GYVPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFR 359 (460)
T ss_pred CCCCCEEEecccccCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999887532 2668999999999999999999988889999999999999
Q ss_pred HHhhcC
Q psy13322 190 GYLRVV 195 (195)
Q Consensus 190 ~~L~~l 195 (195)
+.|+++
T Consensus 360 ~~L~~l 365 (460)
T PRK06541 360 ATLEKL 365 (460)
T ss_pred HHHHHh
Confidence 999763
No 29
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.4e-36 Score=267.46 Aligned_cols=156 Identities=33% Similarity=0.502 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHhc--CCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 36 SNKFYEQLVNAFQYN--VPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~--~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
...+++.|++.|... .+ +++||||+|||||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|++++
T Consensus 202 ~~~~~~~le~~l~~~~~~~-~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~ 279 (457)
T PRK05639 202 INRFLDYLENYVFSHVVPP-DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEW 279 (457)
T ss_pred HHHHHHHHHHHHHHhhcCC-CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch-HHHHHh
Confidence 445677888876532 22 58999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+|++|||+|+||+++||+|+|++++++++++. ....+.+|+++||++|+|++++|++++++++.+++++++++|++.|+
T Consensus 280 ~gv~PDiv~~gK~l~gG~pi~av~~~~~i~~~-~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~ 358 (457)
T PRK05639 280 FEVKPDLIIFGKGVASGMGLSGVIGRKELMDL-TSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLL 358 (457)
T ss_pred cCCCCCEEEechhhcCCCcceeEEehHHHHhh-cCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999983 33346789999999999999999999989999999999999999997
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 359 ~ 359 (457)
T PRK05639 359 E 359 (457)
T ss_pred H
Confidence 6
No 30
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=100.00 E-value=2.5e-36 Score=264.99 Aligned_cols=158 Identities=32% Similarity=0.520 Sum_probs=143.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
....++++|++++....+ +++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus 196 ~~~~~~~~le~~l~~~~~-~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~ 273 (442)
T PRK13360 196 HGAELADELERLVTLHDA-STIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-PFAAQYF 273 (442)
T ss_pred HHHHHHHHHHHHHHhcCC-CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhc
Confidence 345678899999876543 58999999999999999999999999999999999999999999999999998 7788889
Q ss_pred CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA 186 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~ 186 (195)
++.|||+|+||++++| +|+|++++++++++.+... .+.+||++||++|++++++|++++++++.++++++++
T Consensus 274 gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~ 353 (442)
T PRK13360 274 GVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAP 353 (442)
T ss_pred CCCCceeeeeeccccCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999988 6999999999999887542 3678999999999999999999988889999999999
Q ss_pred HHHHHhhc
Q psy13322 187 QIIGYLRV 194 (195)
Q Consensus 187 ~l~~~L~~ 194 (195)
+|++.|++
T Consensus 354 ~l~~~l~~ 361 (442)
T PRK13360 354 YWEDALHS 361 (442)
T ss_pred HHHHHHHH
Confidence 99999875
No 31
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=100.00 E-value=6.3e-37 Score=260.63 Aligned_cols=157 Identities=36% Similarity=0.605 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
...++.+++.+.+..+ ++++|||+|||+|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++++
T Consensus 160 ~~~~~~~~~~~~~~~~-~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~gv 237 (339)
T PF00202_consen 160 QACLNALEELIAALNA-DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYGV 237 (339)
T ss_dssp HHHHHHHHHHHHHHHG-GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHTS
T ss_pred HHHHHHHHHHHHhhcC-CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceecccc
Confidence 3445556665554333 58999999999999999999999999999999999999999999999999998 889999999
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
+|||+|+||++++|+|+|++++++++++.+....+++||++||++|++++++|+.++++++.+++++++++|++.|+++
T Consensus 238 ~PDiv~~gK~l~gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l 316 (339)
T PF00202_consen 238 DPDIVTFGKGLGGGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLREL 316 (339)
T ss_dssp SSSEEEEEGGGGTTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccchhhhhhcccccccchhhccccccccccccccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887777999999999999999999999999999999999999999999753
No 32
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=2.3e-36 Score=266.31 Aligned_cols=155 Identities=26% Similarity=0.470 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.|++.+++. +++||||+|||+|+ |.++++++||++|+++|++||+++|+|||++||||+|+ +|+++++|
T Consensus 213 ~~~~~~~l~~~i~~~---~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~fa~e~~g 287 (459)
T PRK06082 213 DVHYADYLEYVIEKE---GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAYG 287 (459)
T ss_pred HHHHHHHHHHHHhcC---CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHhHhhC
Confidence 456788899988753 48999999999998 47788999999999999999999999999999999998 78899999
Q ss_pred CCcchhhhccccCCCC-ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++|||+|+||++++|+ |+|++++++++++.+......+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 288 v~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~ 367 (459)
T PRK06082 288 IEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLE 367 (459)
T ss_pred CCCCEEEecccccCCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 999999999987655322222799999999999999999998889999999999999999976
Q ss_pred C
Q psy13322 195 V 195 (195)
Q Consensus 195 l 195 (195)
+
T Consensus 368 l 368 (459)
T PRK06082 368 M 368 (459)
T ss_pred H
Confidence 3
No 33
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=100.00 E-value=2.4e-36 Score=266.05 Aligned_cols=154 Identities=35% Similarity=0.540 Sum_probs=138.4
Q ss_pred HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++.+++.|++.. ..+++|+||+||+||++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++|+.|
T Consensus 215 ~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~gv~P 293 (459)
T PRK11522 215 IEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHENVQP 293 (459)
T ss_pred HHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccCCCC
Confidence 355666665321 1158999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred chhhhccccCCC-CceEEEEecHHHHHHhhc--cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANG-FPMGAVVTTTEIAQVLTK--AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G-~~~g~v~~~~~i~~~l~~--~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+|+||++|+| +|+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 294 Divt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~ 372 (459)
T PRK11522 294 DILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQ 372 (459)
T ss_pred CEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999 599999999999887743 3478999999999999999999998889999999999999999975
No 34
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=100.00 E-value=2.4e-36 Score=265.15 Aligned_cols=139 Identities=34% Similarity=0.585 Sum_probs=130.2
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCce
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPM 133 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~ 133 (195)
+++++||+||++|++|.++++++||++|+++|++||+++|+|||++||||+|+ +|++++++++|||+|+||++++|+|+
T Consensus 205 ~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~gv~PDiv~~gK~l~~G~Pi 283 (442)
T TIGR00709 205 DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAGIEPDFVVMSKAVGGGLPL 283 (442)
T ss_pred CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcCCCCcEEEEcccccCCccc
Confidence 48999999999999999999999999999999999999999999999999998 88888899999999999999999999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+++++++ ++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus 284 gav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~ 343 (442)
T TIGR00709 284 AVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDD 343 (442)
T ss_pred EEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 99999988 4655444578999999999999999999998889999999999999999975
No 35
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.4e-36 Score=262.87 Aligned_cols=158 Identities=40% Similarity=0.621 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
..+++++|++++++....+++|+||+|||+|++|+++++++||++|+++|++||++||+||||+||||+|+ ++++++++
T Consensus 188 ~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~-~~~~~~~g 266 (433)
T PRK08117 188 FLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE-WFAAQTFG 266 (433)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc-chhHhhcC
Confidence 34578889998875322258999999999999999999999999999999999999999999999999997 66778889
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.||++|+||++++|+|+|++++++++++.+....+.+||++||++|+|++++|+.++++++.+++++++++|++.|++
T Consensus 267 v~pDi~t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~ 345 (433)
T PRK08117 267 VVPDIMTIAKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEV 345 (433)
T ss_pred CCCCEeehhhhccCCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766688999999999999999999998788999999999999998875
No 36
>PRK06149 hypothetical protein; Provisional
Probab=100.00 E-value=4.1e-36 Score=284.35 Aligned_cols=158 Identities=39% Similarity=0.738 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 38 KFYEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
++.+++++.++... ..+++|+||+|||+|++|.++++++||++|+++|++||+++|+||||+||||+|+.+|+++++|+
T Consensus 726 ~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv 805 (972)
T PRK06149 726 DYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGV 805 (972)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCC
Confidence 44555555554311 11589999999999999999999999999999999999999999999999999975678999999
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhc-cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTK-AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~-~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
.|||+|+||++|||+|+|++++++++++.+.. ..+.+|+++||++|++++++|++++++++.+++++++++|++.|+++
T Consensus 806 ~PDivt~gK~lg~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l 885 (972)
T PRK06149 806 VPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEAL 885 (972)
T ss_pred CCCEEEecccccCCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875 23567889999999999999999998999999999999999999763
No 37
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=100.00 E-value=7.7e-36 Score=262.08 Aligned_cols=160 Identities=33% Similarity=0.534 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
+....++++|+++++...+ +++|+||+|||+|++|++.++++||++|+++|++||+++|+||||+||||+|+ +|++++
T Consensus 198 ~~~~~~~~~l~~~i~~~~~-~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~~~~~ 275 (445)
T PRK09221 198 EHGAELADDLERLVALHDA-STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-AFAAER 275 (445)
T ss_pred HHHHHHHHHHHHHHHhcCC-CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch-hhHHHh
Confidence 3345567889998886543 58999999999999999999999999999999999999999999999999998 788899
Q ss_pred cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhc-------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTK-------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVS 185 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~-------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~ 185 (195)
+++.|||+|+||++++| +|+|++++++++++.+.. ..+++||++||+++++++++|+.++++++.+++++++
T Consensus 276 ~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g 355 (445)
T PRK09221 276 FGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELA 355 (445)
T ss_pred cCCCCCEEEeccccccCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999988 699999999999998753 1367899999999999999999998888999999999
Q ss_pred HHHHHHhhcC
Q psy13322 186 AQIIGYLRVV 195 (195)
Q Consensus 186 ~~l~~~L~~l 195 (195)
++|++.|+++
T Consensus 356 ~~l~~~l~~l 365 (445)
T PRK09221 356 PYFEDAVHSL 365 (445)
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 38
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=4.5e-36 Score=262.49 Aligned_cols=151 Identities=28% Similarity=0.338 Sum_probs=138.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.|+++. +++|+||+||+||++|+++++++||++|+++|++||+++|+||||+|| |+|. +++++++|++||
T Consensus 187 ~~~l~~~l~~~~--~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~gv~PD 262 (428)
T PRK12389 187 IEALKEALDKWG--DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLGVEPD 262 (428)
T ss_pred HHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhCCCCC
Confidence 578888887654 589999999999999999999999999999999999999999999999 8886 556678899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhc---cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTK---AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~---~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+|+||++++|+|+|++++++++++.+.. ..+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 263 ivt~gK~lggG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~ 340 (428)
T PRK12389 263 LTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE 340 (428)
T ss_pred eeeechhhcCCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998853 2377899999999999999999998888999999999999999975
No 39
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=100.00 E-value=1.2e-35 Score=262.13 Aligned_cols=152 Identities=28% Similarity=0.376 Sum_probs=139.6
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
+++.|+++|+++. +++|+||+||++|++|+++++++||++|+++|++||++||+||||+|| |+|. +++.+++|+.|
T Consensus 232 d~~~l~~~l~~~~--~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~gv~P 307 (474)
T PLN02482 232 DLEAVKKLFEANK--GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFGITP 307 (474)
T ss_pred ChHHHHHHHHhCC--CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhCCCC
Confidence 3678888887653 589999999999999999999999999999999999999999999999 9987 66778899999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++|+||++|||+|+|++++++++++.+... .+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 308 Di~t~gK~lggG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~ 386 (474)
T PLN02482 308 DLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILE 386 (474)
T ss_pred CEEEecchhhCCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988632 377899999999999999999998888999999999999999975
No 40
>KOG1401|consensus
Probab=100.00 E-value=2.7e-35 Score=247.97 Aligned_cols=154 Identities=35% Similarity=0.516 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++..+|+++++.+. +.|+|||+||+||.||.++++++||..|+.+|+++|+++|+|||++||||+|. .|++++++++
T Consensus 191 nd~t~l~k~~~~h~--~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~~~ 267 (433)
T KOG1401|consen 191 NDSTALEKLFESHK--GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFGVT 267 (433)
T ss_pred CCHHHHHHHHHhCC--CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhCcC
Confidence 34799999999885 68999999999999999999999999999999999999999999999999998 7899999999
Q ss_pred cchhhhccccCCCCceEEEEecHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|||+|++|.++||+|+|++++++++++.+.... |+.||++||++|.++..+|+.+.+++.++++.+.++.|++.|.+
T Consensus 268 PDI~t~aK~L~gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e 347 (433)
T KOG1401|consen 268 PDITTVAKPLGGGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDE 347 (433)
T ss_pred CcceeehhhccCCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765 59999999999999999999999999999999999999998864
No 41
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.7e-35 Score=256.89 Aligned_cols=157 Identities=37% Similarity=0.585 Sum_probs=139.3
Q ss_pred hHHHHHHHHHH-HHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 35 ASNKFYEQLVN-AFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 35 ~~~~~~~~l~~-~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
....+++.+++ ++++....+++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ ++++++
T Consensus 200 ~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~-~~a~~~ 278 (441)
T PRK05769 200 CGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEH 278 (441)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-eehhhc
Confidence 34456788888 4443211258999999999999999999999999999999999999999999999999997 778888
Q ss_pred cCCCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++.||++++||++++|+|+|++++++++++.+ ...+++||++||++|++++++|+++++ ++.+++++++++|++.|+
T Consensus 279 ~gv~pDivt~~K~l~~G~p~gav~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~ 356 (441)
T PRK05769 279 FGVEPDIITLAKAIAGGLPLGAVIGRAELMFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELK 356 (441)
T ss_pred cCCCCCEEEEcccccCCcccEEEEEehhhhhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988643 345888999999999999999999988 999999999999999997
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 357 ~ 357 (441)
T PRK05769 357 E 357 (441)
T ss_pred H
Confidence 5
No 42
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=4.9e-35 Score=255.40 Aligned_cols=158 Identities=30% Similarity=0.485 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.+++.+......+++||||+|||+|++|.++++++|+++|+++|++||++||+|||++||||+|+ ++++++++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~ 256 (420)
T TIGR00700 178 TDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG 256 (420)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC
Confidence 33567888888752211258999999999999999999999999999999999999999999999999997 77888889
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++.++++++.|++
T Consensus 257 ~~pDi~~lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~ 335 (420)
T TIGR00700 257 PEPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTT 335 (420)
T ss_pred CCCCEEEeeccccCCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766688999999999999999999998888999999999999999875
No 43
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=3.9e-35 Score=256.52 Aligned_cols=156 Identities=33% Similarity=0.524 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.|++.|+.+. +++||||+||+ ||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus 189 ~~~~l~~l~~~i~~~~--~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~ 265 (429)
T PRK06173 189 NDEAIEPLQDLLEQKG--DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALEHA 265 (429)
T ss_pred HHHHHHHHHHHHHhCC--CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHHhc
Confidence 4567888999997553 58999999997 999999999999999999999999999999999999999998 7788889
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc-----cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK-----AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~-----~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l 188 (195)
|+.|||+|+||+++||+ |++++++++++++.+.. ..+++||++||++|++++++|++++++++.+++++++++|
T Consensus 266 gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l 345 (429)
T PRK06173 266 GVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQL 345 (429)
T ss_pred CCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999995 99999999999998853 2377899999999999999999998888999999999999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
++.|++
T Consensus 346 ~~~L~~ 351 (429)
T PRK06173 346 KQELAP 351 (429)
T ss_pred HHHHHH
Confidence 999874
No 44
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=5.7e-35 Score=255.65 Aligned_cols=152 Identities=21% Similarity=0.277 Sum_probs=138.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|++.|+++. +++++||+||++|++|+++++++||++|+++|++||+++|+||||+|| |+|. +++++++++.|
T Consensus 187 d~~~l~~~l~~~~--~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~gv~P 262 (433)
T PRK00615 187 DFQIFQTVMNSLG--HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYHVKP 262 (433)
T ss_pred CHHHHHHHHHhcC--CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcCCCC
Confidence 3678888887654 589999999999999999999999999999999999999999999999 8997 67788899999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+|+||++|||+|+|++++++++++.+... .+.+||++||++|+|++++|++++++++.+++++++++|++.|++
T Consensus 263 Di~~~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~ 341 (433)
T PRK00615 263 DITVYGKILGGGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEE 341 (433)
T ss_pred CeEEEcccccCCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988642 266899999999999999999998888999999999999888865
No 45
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=100.00 E-value=6.3e-35 Score=255.10 Aligned_cols=158 Identities=30% Similarity=0.524 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
+..++++++++.|++.. +++++||+||+ ++.+|+++++++||++|+++|++||++||+||||+||||+|+ +|++++
T Consensus 186 ~~~~d~~~l~~~l~~~~--~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~ 262 (428)
T PRK07986 186 WDERDIAPFARLMAAHR--HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEH 262 (428)
T ss_pred hHHHHHHHHHHHHHhCC--CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecc
Confidence 34577889999997653 58999999996 889999999999999999999999999999999999999998 788899
Q ss_pred cCCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 114 HGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
+|++|||+|+||+++|| +|+|++++++++++.+... .+++||++||++|+|++++|+.++++++++++++++++
T Consensus 263 ~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~ 342 (428)
T PRK07986 263 AGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQ 342 (428)
T ss_pred cCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999 4999999999999998653 27889999999999999999999888999999999999
Q ss_pred HHHHhhcC
Q psy13322 188 IIGYLRVV 195 (195)
Q Consensus 188 l~~~L~~l 195 (195)
|++.|+++
T Consensus 343 l~~~l~~l 350 (428)
T PRK07986 343 LREELAPL 350 (428)
T ss_pred HHHHHHHH
Confidence 99998753
No 46
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=100.00 E-value=8.6e-35 Score=252.13 Aligned_cols=149 Identities=41% Similarity=0.621 Sum_probs=138.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.|. +++++||+||+++++|.++++++||++|+++|++||+++|+||||+|+||+|. +++++++++.||
T Consensus 169 ~~~l~~~l~-----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~gv~pD 242 (397)
T TIGR03246 169 LAAAKALIS-----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPD 242 (397)
T ss_pred HHHHHHHhc-----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcCCCCC
Confidence 677888775 37999999999999999999999999999999999999999999999999998 677788899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++|||+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus 243 i~t~~K~lggG~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~~~l~~~L~~ 317 (397)
T TIGR03246 243 ILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPELLAGVKQRHDLFVDGLEK 317 (397)
T ss_pred EEEeehhhhCCcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766688899999999999999999988788999999999999999876
No 47
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=1.5e-34 Score=252.36 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..+++.+++.+++....+++|+||+||+||++|..+++++||++|+++|++||++||+||||+||||+|+ +++++++++
T Consensus 180 ~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~ 258 (421)
T PRK06777 180 EEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYDV 258 (421)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcCC
Confidence 4567888888875211258999999999999999999999999999999999999999999999999997 778888899
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.||++++||++++|||+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus 259 ~pDiv~~sK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~ 336 (421)
T PRK06777 259 KPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEK 336 (421)
T ss_pred CCCEEeeehhhcCCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988777788999999999999999999998889999999999999999976
No 48
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.3e-34 Score=252.82 Aligned_cols=153 Identities=30% Similarity=0.525 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.+++++. +++||||+||+ ||.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus 186 ~~~~~~~~~~~~~-----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~ 259 (422)
T PRK05630 186 ISEYLRSLELLID-----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAA 259 (422)
T ss_pred HHHHHHHHHHHHh-----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhc
Confidence 3456677777665 48999999996 999999999999999999999999999999999999999998 8888999
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++.|||+|+||+++||+ |+|++++++++++.+... .+++||++||++|++++++|+.++++++.+++++++++
T Consensus 260 gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~ 339 (422)
T PRK05630 260 GVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAE 339 (422)
T ss_pred CCCCCeeeeechhhcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999995 999999999999988532 37889999999999999999999888899999999999
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
|++.|+.
T Consensus 340 l~~~L~~ 346 (422)
T PRK05630 340 LIAGLSP 346 (422)
T ss_pred HHHHHHH
Confidence 9998864
No 49
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=7.1e-34 Score=249.56 Aligned_cols=157 Identities=32% Similarity=0.523 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..+++.++++|++....+++||||+||+++++|.+.++++||++|+++|++||+++|+||||+||||+|+ +++++++++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~-~~a~~~~~~ 264 (443)
T PRK08360 186 MECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-WFAIEHFGV 264 (443)
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-chhhhhcCC
Confidence 3567778888875322258999999999999999999999999999999999999999999999999997 677777899
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus 265 ~pDiitlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~ 342 (443)
T PRK08360 265 EPDIITLGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEE 342 (443)
T ss_pred CCCEEEecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766688899999999999999999998888999999999999999875
No 50
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=100.00 E-value=4.4e-34 Score=249.75 Aligned_cols=158 Identities=37% Similarity=0.565 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..+++.+++++++....+++++||+||++|++|.++++++|+++|+++|++||+++|+||||+||||+|+ +++++++++
T Consensus 180 ~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~gv 258 (425)
T PRK07495 180 EQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHEV 258 (425)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccCC
Confidence 3567888888874322258999999999999999999999999999999999999999999999999998 778888899
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
.|||+++||++++|+|+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|+++|+++
T Consensus 259 ~pDi~tlsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l 337 (425)
T PRK07495 259 AADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASL 337 (425)
T ss_pred CCCEEeehhhhcCCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887766889999999999999999999988899999999999999999753
No 51
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=249.55 Aligned_cols=149 Identities=28% Similarity=0.469 Sum_probs=136.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|++.+. +++++||+||++|++|+++++++||++|+++|++||+++|+||||+||||+|+ +|+++++++.|
T Consensus 168 d~~~l~~~l~-----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~gv~P 241 (395)
T PRK03715 168 DIASVEKLIT-----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSGIEP 241 (395)
T ss_pred hHHHHHHHcC-----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcCCCC
Confidence 4677777774 37899999999999999999999999999999999999999999999999998 77889999999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+|+||++++|+|+|+++++++++. +....+.+||++||++|++++++|++++++++.+++++++++|++.|++
T Consensus 242 Di~t~gK~lg~G~p~~av~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~ 316 (395)
T PRK03715 242 DIMTLGKGIGGGVPLAALLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRARGEYLKEKLLE 316 (395)
T ss_pred ceeeehhhhhCCcceEEEEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999863 3333478899999999999999999998889999999999999999975
No 52
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=100.00 E-value=1e-33 Score=249.20 Aligned_cols=158 Identities=29% Similarity=0.524 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
...+++.+++.+.+....+++||||+||++|.+|.++++++||++|+++|++||++||+|||++||||+|. ++++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~ 278 (451)
T PRK06918 200 DDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFD 278 (451)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcC
Confidence 34456667776643211258999999999999999999999999999999999999999999999999997 77888889
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.||++++||++++|||+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++.+++++++|++
T Consensus 279 v~pDi~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~ 357 (451)
T PRK06918 279 VVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEE 357 (451)
T ss_pred CCCCEEeeehhhcCCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766688999999999999999999998888999999999999998875
No 53
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=100.00 E-value=5e-34 Score=249.42 Aligned_cols=155 Identities=30% Similarity=0.491 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 38 KFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
.++++|+++|+++... +++|+||+|||||++|+++++++||++|+++|++||++||+||||+||||+|+ +++++++++
T Consensus 180 ~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~v 258 (425)
T PRK09264 180 DTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGI 258 (425)
T ss_pred hHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcCC
Confidence 4678899998764321 47999999999999999999999999999999999999999999999999997 778888999
Q ss_pred CcchhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVL-DVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal-~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.|||+|+||++++ |+|+|++++++++. .+....+.+||++||+++++++++| +.++++++.+++++++++|++.|++
T Consensus 259 ~PDi~t~~K~l~~~G~pigav~~~~~i~-~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~ 337 (425)
T PRK09264 259 TPDIVTLSKSISGYGLPMALVLIKPELD-VWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEE 337 (425)
T ss_pred CCCEEEeccccCCCccceEEEEEchhhh-ccCCCccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 99999999999874 5544457889999999999999999 5666778999999999999998865
No 54
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=100.00 E-value=8.8e-34 Score=262.41 Aligned_cols=156 Identities=25% Similarity=0.345 Sum_probs=134.5
Q ss_pred hHHHHHHHHHHHHHh----cCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcc
Q psy13322 35 ASNKFYEQLVNAFQY----NVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYW 109 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~----~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~ 109 (195)
....+++.+++.|++ ..+ +++||||+||+ +|.+|+++++++|+++|+++|++||++||+|||++||||+|+ +|
T Consensus 561 ~~~~~~~~le~~l~~~~~~~~~-~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~f 638 (817)
T PLN02974 561 LAKAYRSYIEQQLDEYEASAKN-GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ES 638 (817)
T ss_pred hhHHHHHHHHHHHHhhccccCC-CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hh
Confidence 345677889988875 222 58999999995 899999999999999999999999999999999999999998 88
Q ss_pred cccccCCCcchhhhccccCCCC-ceEEEEecHHHHHHhhc------cccccCCCchHHHHHHHHHHHHhhcchhHH----
Q psy13322 110 GFEMHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTK------AAHFNTFGGNPVGCVIASTVLDVIKDEELQ---- 178 (195)
Q Consensus 110 ~~~~~~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~---- 178 (195)
+++++|++|||+|+||+++||+ |+|++++++++++.+.. ..|++||++||++|+||+++|++++++++.
T Consensus 639 a~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~~~l~ 718 (817)
T PLN02974 639 AWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTNPNLI 718 (817)
T ss_pred hHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHH
Confidence 9999999999999999999995 99999999999998852 238899999999999999999999876444
Q ss_pred HHHHHHHHHHHHHh
Q psy13322 179 YNCKQVSAQIIGYL 192 (195)
Q Consensus 179 ~~l~~~~~~l~~~L 192 (195)
++.++.++++.+.|
T Consensus 719 ~~~~~l~~~l~~~l 732 (817)
T PLN02974 719 PPGSRLRELWDEEL 732 (817)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555555
No 55
>KOG1403|consensus
Probab=100.00 E-value=1.3e-34 Score=236.24 Aligned_cols=179 Identities=39% Similarity=0.637 Sum_probs=159.8
Q ss_pred CCCCCCCCCCCCCCcCCCCcccccccCCCCccchhHHHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHH
Q psy13322 1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLR 79 (195)
Q Consensus 1 ~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~ 79 (195)
|-||.||++|++...++. +-...|.+.+++++++...+ ..+||+|.|+.||-||.++||.+|++
T Consensus 169 PcPDvyrGK~r~~~~~~a---------------~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq 233 (452)
T KOG1403|consen 169 PCPDVYRGKFRDKMYPDA---------------DMGALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQ 233 (452)
T ss_pred CCccccccccccccCCcc---------------cchhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHH
Confidence 458999999997333322 22357788888888764322 47999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCc
Q psy13322 80 RAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGG 157 (195)
Q Consensus 80 ~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~ 157 (195)
++.+..+.+|.+.|.|||+.||||.|+++|+++.+++.|||+|+||.+|+|.|++++++++++.+.|.... +.+||++
T Consensus 234 ~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGG 313 (452)
T KOG1403|consen 234 AVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGG 313 (452)
T ss_pred HHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccHHHHHHhccccceehhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997643 7889999
Q ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 158 NPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 158 ~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||++||+++++++++++++++++.++.|++|...|++
T Consensus 314 nPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~ 350 (452)
T KOG1403|consen 314 NPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRR 350 (452)
T ss_pred CchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998875
No 56
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=100.00 E-value=2.5e-33 Score=240.00 Aligned_cols=152 Identities=30% Similarity=0.372 Sum_probs=138.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
+++.+++++++.+ +++||||+|||+|+.|.+.|.++||++|+++|++||++||+|||+||| |... ..+...+|++|
T Consensus 186 D~~al~~~~~~~g--~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGF-R~~~-gGaq~~~gi~P 261 (432)
T COG0001 186 DLEALEEAFEEYG--DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGF-RVAL-GGAQGYYGVEP 261 (432)
T ss_pred CHHHHHHHHHHcC--CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhc-ccCC-cccccccCcCc
Confidence 4799999999875 699999999999999999999999999999999999999999999999 5553 33557789999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+.|+||.+|||+|+|++.+++++|+.+.... +..|+++||++++|++++|+.+.+ +...+++.+.+++|++.|++
T Consensus 262 DlttlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~ 341 (432)
T COG0001 262 DLTTLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRA 341 (432)
T ss_pred chhhhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886643 788999999999999999999976 56899999999999999975
No 57
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=100.00 E-value=2.3e-33 Score=243.88 Aligned_cols=149 Identities=38% Similarity=0.600 Sum_probs=137.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++||+||+++++|.++++++||++|+++|++||++||+||||+||||+|+ +++++++++.||
T Consensus 173 ~~~l~~~l~-----~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~v~pD 246 (406)
T PRK12381 173 LNSASALID-----DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYGVTPD 246 (406)
T ss_pred HHHHHHhcc-----CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhCCCCC
Confidence 567777774 47999999999999999999999999999999999999999999999999997 667778899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++|||+|++++++++++.+....+.+||++||+++++++++|+.++++++++++++++++|.+.|++
T Consensus 247 i~t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~ 321 (406)
T PRK12381 247 VLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNT 321 (406)
T ss_pred EEEehhhhhCCCceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776688899999999999999999998788999999999999999875
No 58
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=100.00 E-value=3.2e-33 Score=244.10 Aligned_cols=158 Identities=28% Similarity=0.463 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
..++++.+++++++....+++++||+||+++++|..+++++|+++|+++|++||++||+|||++||||+|+ ++++++++
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~ 257 (421)
T PRK09792 179 TQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYA 257 (421)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcC
Confidence 34678899998875322258999999999999999999999999999999999999999999999999997 77888889
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.|||++|||++++|+|+|++++++++++.+....+.+||++||++|+|++++++.++++++.++++++++++++.|++
T Consensus 258 ~~pDi~t~gK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~ 336 (421)
T PRK09792 258 DKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLID 336 (421)
T ss_pred CCCcEEEeehhhcCCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988766688999999999999999999998888999999999999998875
No 59
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=100.00 E-value=8.7e-33 Score=241.73 Aligned_cols=157 Identities=32% Similarity=0.555 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
..+++++++++++++. +++++||+||+ ++.+|.++++++||++|+++|++||+++|+||||+||||+|+ +|+++++
T Consensus 190 ~~~~~~~l~~~l~~~~--~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~ 266 (427)
T TIGR00508 190 NEEAITPLAKLMELHS--DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHA 266 (427)
T ss_pred HHHHHHHHHHHHHhcC--CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhc
Confidence 4567889999998663 58999999997 888999999999999999999999999999999999999997 7788889
Q ss_pred CCCcchhhhccccCCCC-ceEEEEecHHHHHHhhcc-----ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~-~~g~v~~~~~i~~~l~~~-----~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l 188 (195)
++.|||+++||+++||+ |++++++++++++.+... .+++||++||+++++++++|++++++++.+++++++++|
T Consensus 267 ~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l 346 (427)
T TIGR00508 267 GVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQL 346 (427)
T ss_pred CCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999996 999999999999988753 267899999999999999999998888999999999999
Q ss_pred HHHhhcC
Q psy13322 189 IGYLRVV 195 (195)
Q Consensus 189 ~~~L~~l 195 (195)
++.|+++
T Consensus 347 ~~~L~~l 353 (427)
T TIGR00508 347 KRELSPL 353 (427)
T ss_pred HHHHHHh
Confidence 9999753
No 60
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=100.00 E-value=6.7e-33 Score=241.48 Aligned_cols=155 Identities=28% Similarity=0.465 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 38 KFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
++++.++++++++..+ +++|+||+||+||++|.++++++||++|+++|++||++||+|||++||||+|+ +|+++++++
T Consensus 176 ~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~v 254 (412)
T TIGR02407 176 DTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAGI 254 (412)
T ss_pred hHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccCC
Confidence 5678899988765321 47999999999999999999999999999999999999999999999999998 778888999
Q ss_pred CcchhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.|||+++||++++ |+|+|++++++++ +.+....+.+||++||++|+++.++|+. ++++++.+++++++++|+++|+.
T Consensus 255 ~PDi~~~~K~lg~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~ 333 (412)
T TIGR02407 255 EPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDR 333 (412)
T ss_pred CCCEEEechhccCCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 9999999999887 6555455889999999999999999995 77788999999999999998874
No 61
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=100.00 E-value=5.8e-33 Score=244.27 Aligned_cols=151 Identities=28% Similarity=0.435 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
..++++.|+++|+++. +++||||+|||+|++|+++++++||++|+++|++||++||+|||++||||+|. +|+++++|
T Consensus 234 ~~~~l~~l~~~l~~~~--~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~-~fa~e~~g 310 (464)
T TIGR00699 234 EQRCLEEVEDLIKKWH--KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWN 310 (464)
T ss_pred HHHHHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcc-hhHHHhcC
Confidence 4567899999998653 58999999999999999999999999999999999999999999999999998 88999999
Q ss_pred CC--cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322 116 VS--PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 116 ~~--pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L 192 (195)
+. |||+|+||+++ +|+. ++++ .........+++||++||++|++++++|+.++++++.+++++++++|++.|
T Consensus 311 v~~~PDi~t~gK~lg~gG~~----~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L 385 (464)
T TIGR00699 311 LDDPPDMVTFSKKFQTAGYF----FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGL 385 (464)
T ss_pred CCCCCCEEEehhhhccCCcc----ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 97 99999999996 6753 2332 211111234788999999999999999999998999999999999999999
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 386 ~~ 387 (464)
T TIGR00699 386 ED 387 (464)
T ss_pred HH
Confidence 75
No 62
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=100.00 E-value=1.5e-32 Score=239.98 Aligned_cols=157 Identities=30% Similarity=0.507 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...+++.|++.+.++. +++++||+|| +++.+|.++++++||++|+++|++||++||+||||+||||+|+ +++++++
T Consensus 182 ~~~~~~~l~~~l~~~~--~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~ 258 (423)
T PRK05964 182 EQATLDALEALLEKHA--GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQA 258 (423)
T ss_pred HHHHHHHHHHHHHhCC--CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHhc
Confidence 3456899999997653 5899999999 6999999999999999999999999999999999999999997 7778888
Q ss_pred CCCcchhhhccccCCC-CceEEEEecHHHHHHhhcc------ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA------AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQ 187 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~------~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~ 187 (195)
++.||++++||++++| +|+|++++++++++.+... .+++||++||++++|++++|+.++++++.+++++++++
T Consensus 259 ~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~ 338 (423)
T PRK05964 259 GVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAG 338 (423)
T ss_pred CCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999988 7999999999999988532 36788999999999999999999888899999999999
Q ss_pred HHHHhhcC
Q psy13322 188 IIGYLRVV 195 (195)
Q Consensus 188 l~~~L~~l 195 (195)
|++.|+++
T Consensus 339 l~~~l~~l 346 (423)
T PRK05964 339 LAEGLEPF 346 (423)
T ss_pred HHHHHHhh
Confidence 99998753
No 63
>PRK07046 aminotransferase; Validated
Probab=100.00 E-value=1.2e-32 Score=242.27 Aligned_cols=149 Identities=22% Similarity=0.237 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
+++.+++++. + +++||||+||++|++|.++++++||++|+++|++||+++|+|||++ | |.|.+ ...+++|++|
T Consensus 206 d~~~l~~~l~---~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~G-g~~~~~gv~P 278 (453)
T PRK07046 206 DLAALEAALA---D-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGPG-GYTRAHGLEP 278 (453)
T ss_pred CHHHHHHHhC---C-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCCc-chhHHhCCCc
Confidence 3678888774 2 5899999999999999999999999999999999999999999999 5 45542 2346679999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhc---------cccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTK---------AAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~---------~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
||+|+||++|||+|+|++++++++++.+.. ..+++||++||++|+|++++|++++++++.+++++++++|+
T Consensus 279 Di~t~gK~lggG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~ 358 (453)
T PRK07046 279 DFLVVGKPIAGGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAARLA 358 (453)
T ss_pred cceeehhhhcCCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999999998853 12678999999999999999999988889999999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 359 ~~L~~ 363 (453)
T PRK07046 359 AGLRA 363 (453)
T ss_pred HHHHH
Confidence 99975
No 64
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=100.00 E-value=1.8e-32 Score=239.61 Aligned_cols=151 Identities=28% Similarity=0.368 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.++++. +++++||+||++|++|+++++++||++|+++|++||+++|+||||+|+ |+|. ++..+++++.||
T Consensus 184 ~~~l~~~i~~~~--~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~~~pD 259 (426)
T PRK00062 184 LEAVEELFEEYG--DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYGVTPD 259 (426)
T ss_pred HHHHHHHHHhCC--CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhCCCcc
Confidence 678888887653 589999999999999999999999999999999999999999999999 8886 556677899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++|||+|++++++++++.+... .+.+|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus 260 i~~~gK~l~~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (426)
T PRK00062 260 LTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKE 337 (426)
T ss_pred hHhhhhHhhCCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988632 356788999999999999999998778999999999999998874
No 65
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.98 E-value=7.3e-32 Score=235.28 Aligned_cols=152 Identities=28% Similarity=0.361 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|++++.++. +++++||+||++|++|.+.++++|+++|+++|++||+++|+||||+|| |+|. .+.++++++.|
T Consensus 181 d~~~l~~~i~~~~--~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~~~p 256 (423)
T TIGR00713 181 DLEALEEVFEEYG--EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFGVEP 256 (423)
T ss_pred CHHHHHHHHHHcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhCCCc
Confidence 3688888887653 489999999999999999888999999999999999999999999999 8886 55667789999
Q ss_pred chhhhccccCCCCceEEEEecHHHHHHhhcc---ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~---~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++||||++++|||+|++++++++++.+... .+.+|+++||++|++++++|+.++++++.++++++++++++.|++
T Consensus 257 Di~t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (423)
T TIGR00713 257 DLTTLGKIIGGGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSE 335 (423)
T ss_pred chhhhhhhhcCCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988642 367899999999999999999998777889999999998887753
No 66
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.98 E-value=5e-32 Score=237.89 Aligned_cols=153 Identities=31% Similarity=0.469 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~ 114 (195)
...++++.+++++.++. +++||||+|||||++|+++++++||++|+++|++||+++|+|||++||||+|+ +|+++++
T Consensus 207 ~~~~~~~~~~~~i~~~~--~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~ 283 (443)
T PRK08297 207 LEAEALAQARAAFERHP--HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-AWAYQQL 283 (443)
T ss_pred HHHHHHHHHHHHHHhCC--CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-HHHHHhc
Confidence 34467888999998653 58999999999999999999999999999999999999999999999999998 8888999
Q ss_pred CCCcchhhhccccCCCCceEEEEecHHHHHHh----h-ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL----T-KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 115 ~~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l----~-~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
+++|||+|+||+++ ++++++.+++.+.+ . ...+++||++||++|++++++|++++++++.+++++++++|+
T Consensus 284 gv~PDiv~~gK~l~----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~ 359 (443)
T PRK08297 284 GVRPDIVAFGKKTQ----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLL 359 (443)
T ss_pred CCCCCEEEeccccc----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999985 34555555544322 1 123788999999999999999999988899999999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 360 ~~L~~ 364 (443)
T PRK08297 360 ARLEE 364 (443)
T ss_pred HHHHH
Confidence 99975
No 67
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.98 E-value=1.2e-31 Score=233.32 Aligned_cols=151 Identities=34% Similarity=0.544 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. + +++++||+||+++.+|.+.++++||++|+++|++||+++|+||||+||||+|. +++...+++.||
T Consensus 176 ~~~l~~~~~---~-~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~~~pd 250 (408)
T PRK04612 176 VEALEAAMA---G-GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQVTPD 250 (408)
T ss_pred HHHHHHhhC---C-CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcCCCCC
Confidence 567777774 2 48999999999999999999999999999999999999999999999999997 667777799999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
+++|||++++|||+|++++++++++.+....+.+||++||++|++++++|+.++++++.+++++++++|++.|+++
T Consensus 251 i~t~~K~l~~G~piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~l~~l 326 (408)
T PRK04612 251 IVTLAKALGGGFPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAALRAGLEAL 326 (408)
T ss_pred EEEEcchhcCCCceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887767889999999999999999999988899999999999999999763
No 68
>PLN00144 acetylornithine transaminase
Probab=99.98 E-value=8.5e-32 Score=232.46 Aligned_cols=150 Identities=35% Similarity=0.537 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+.. +++++||+||+|+.+|...++++|+++|+++|++||+++|.||||+||||+|. +++++.+++.||
T Consensus 156 ~~~l~~~~~~----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~~~~~~~~PD 230 (382)
T PLN00144 156 LEAARKLIQK----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWAHEAYGVEPD 230 (382)
T ss_pred HHHHHHhcCC----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-HhhhhhcCCCCC
Confidence 5777777742 48999999999999999999999999999999999999999999999999998 677778899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++|||++++|+|+|++++++++++.+....+.+|+++||++|++++++|+.++++++.+++++++++|++.|++
T Consensus 231 i~t~sK~l~~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 231 IMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPGFLASVAKKGEYLRELLRR 305 (382)
T ss_pred EEEecccccCCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766688999999999999999999998889999999999999888764
No 69
>PLN02624 ornithine-delta-aminotransferase
Probab=99.97 E-value=2.2e-31 Score=235.58 Aligned_cols=152 Identities=32% Similarity=0.535 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|+++|+... +++++||+||++|++|.+.++++||++|+++|++||+++|+||||+||||+|. ++++++.++.||
T Consensus 211 ~~~l~~~l~~~~--~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~i~pD 287 (474)
T PLN02624 211 LDALEKIFEEDG--DRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEEVRPD 287 (474)
T ss_pred HHHHHHHHHhCC--CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcCCCCC
Confidence 577888887543 48999999999999999999999999999999999999999999999999997 667777899999
Q ss_pred hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++| ||+|++++++++++.+....+++||++||++++++.++|+.++++++.+++.+++++|++.|++
T Consensus 288 iv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~~~l~~~~~~~~~~l~~~L~~ 363 (474)
T PLN02624 288 VVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDEKLAERSAKLGQELRDQLQK 363 (474)
T ss_pred EEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 99999999966 8999999999998888766688899999999999999999998778899999999999998865
No 70
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.97 E-value=4.7e-31 Score=228.75 Aligned_cols=153 Identities=33% Similarity=0.578 Sum_probs=138.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|+++|++.. +++++||+||++|++|.+.++.+||++|+++|++||+++|+||||+|+|++|+ +++.+..++.||
T Consensus 173 ~~~le~~l~~~~--~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~~~~d 249 (401)
T TIGR01885 173 LEALEEALEDHG--PNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHENVKPD 249 (401)
T ss_pred HHHHHHHHHhcC--CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcCCCCC
Confidence 678888887653 48999999999999999999999999999999999999999999999999997 666666789999
Q ss_pred hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhcC
Q psy13322 120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
++++||++++| ||+|++++++++++.+....+.+|++++|+++++++++|+.++++++.+++++++++|++.|+++
T Consensus 250 i~~~gK~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~i~~~~l~~~~~~~~~~~~~~L~~l 326 (401)
T TIGR01885 250 IVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEEKLAENAEKLGEIFRDQLKKL 326 (401)
T ss_pred EEEeeccccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 99999999965 89999999999999887656778999999999999999999987788899999999999999764
No 71
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.97 E-value=4.5e-31 Score=228.39 Aligned_cols=149 Identities=40% Similarity=0.640 Sum_probs=136.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++||+||+++++|.+.++++|+++|+++|++||+++|+||||+||||+|+ +++++.+++.||
T Consensus 173 ~~~l~~~~~-----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~~~pD 246 (398)
T PRK03244 173 VDALAAAVD-----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDGVTPD 246 (398)
T ss_pred HHHHHHhhc-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhCCCCC
Confidence 567777663 37899999999999999999999999999999999999999999999999997 666777899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++|||++++|+|+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|++.|++
T Consensus 247 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 321 (398)
T PRK03244 247 VVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEGLLENAERLGEQLRAGIEA 321 (398)
T ss_pred EEEEchhhhCCcccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988766688899999999999999999988778999999999999999975
No 72
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.97 E-value=2.6e-31 Score=227.97 Aligned_cols=134 Identities=36% Similarity=0.595 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+. ++++|||+||++|++|.++++++||++|+++|++||+++|+|||++|+ |+|+ +|+++++++.||
T Consensus 152 ~~~l~~~i~-----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~gv~PD 224 (364)
T PRK04013 152 VEAAKEAIT-----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYKVEPD 224 (364)
T ss_pred HHHHHHHhc-----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcCCCCC
Confidence 356666664 489999999999999999999999999999999999999999999999 9998 888899999999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHH
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQV 184 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~ 184 (195)
|+|+||++++|+|+|+++.++++ ....+.+||++||++|+|++++|++++++++.+++++.
T Consensus 225 iv~~gK~lggG~P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 225 IVTMGKGIGNGVPVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred EEEecccccCCceeEEEEecccc----cCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999998776 23358899999999999999999999998998888775
No 73
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.97 E-value=8.3e-31 Score=227.44 Aligned_cols=149 Identities=38% Similarity=0.626 Sum_probs=136.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++||+||+++++|+..++++|+++|+++|++||+++|+||||+|+|++|+ +++++.+++.||
T Consensus 174 ~~~l~~~l~-----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pd 247 (403)
T PRK05093 174 LAAVKAVID-----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYGVTPD 247 (403)
T ss_pred HHHHHHHhc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcCCCCC
Confidence 677777774 37999999999999999999999999999999999999999999999999997 566677899999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.+|||++++|||+|++++++++++.+....+.+|++++|+++++++++|+.+.++++.+++++++++|.+.|++
T Consensus 248 i~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~~~l~~~L~~ 322 (403)
T PRK05093 248 ILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEVLEGVKARRQRFVDGLQK 322 (403)
T ss_pred EEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776677889999999999999999987778899999999999999975
No 74
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=225.35 Aligned_cols=149 Identities=39% Similarity=0.613 Sum_probs=136.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++||+||+++++|..++++++|++|+++|++||++||+||||+|||++|+ +++++.+++.||
T Consensus 165 ~~~l~~~l~-----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~~~pd 238 (389)
T PRK01278 165 IEALKAAIT-----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGVTPD 238 (389)
T ss_pred HHHHHHhhC-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccCCCCC
Confidence 577777775 37999999999999999999999999999999999999999999999999997 666777799999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++|||+|++++++++++.+....+.+|+++||+++++++++|+.++++++.+++++++++++++|++
T Consensus 239 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~ 313 (389)
T PRK01278 239 IMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEG 313 (389)
T ss_pred EEEEehhccCCcceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988777788999999999999999999997778889999999999998875
No 75
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.97 E-value=1.3e-30 Score=228.35 Aligned_cols=152 Identities=33% Similarity=0.500 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~ 115 (195)
..++++++++.++++. +++||||+|||+|++|+++++++||++|+++|++||++||+||||+||||+|+ +|++++++
T Consensus 201 ~~~~l~~~~~~~~~~~--~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~a~~~~g 277 (431)
T TIGR03251 201 EEEALRQARAAFAERP--HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG 277 (431)
T ss_pred HHHHHHHHHHHHHhCC--CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-HHHHHhcC
Confidence 4467888988888653 58999999999999999999999999999999999999999999999999998 78889999
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhh-----ccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT-----KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG 190 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~-----~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~ 190 (195)
+.||++++||++ ++++++..+++.+... ...+.+||++||+++++++++|+.++++++.+++++++++|++
T Consensus 278 v~PDi~~~gK~~----~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~ 353 (431)
T TIGR03251 278 VQPDIVAFGKKT----QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLA 353 (431)
T ss_pred CCCCEEEecccC----ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999997 3445555554433221 1236789999999999999999999888899999999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 354 ~L~~ 357 (431)
T TIGR03251 354 RLHE 357 (431)
T ss_pred HHHH
Confidence 9875
No 76
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.97 E-value=2.1e-30 Score=222.70 Aligned_cols=149 Identities=36% Similarity=0.582 Sum_probs=134.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++++||+||++|++|.+++++++|++|+++|++||+++|+||||+|||++|. +++++++++.||
T Consensus 157 ~~~l~~~~~-----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~~~~d 230 (377)
T PRK02936 157 IKALKEVMN-----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFGLDPD 230 (377)
T ss_pred HHHHHHhcc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhCCCCc
Confidence 567777664 37899999999999999999999999999999999999999999999999997 666677799999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++|||+|++++++++++.+....+.+|+++||+++++++++|+.+..++++++++++++++++.|++
T Consensus 231 i~t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~l~~~L~~ 305 (377)
T PRK02936 231 IVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKGEYFLQKLQE 305 (377)
T ss_pred EEEEcccccCCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766677889999999999999999986677889999999999998875
No 77
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.97 E-value=2.6e-30 Score=223.84 Aligned_cols=149 Identities=36% Similarity=0.617 Sum_probs=134.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++||+||+++++|.+.++++||++|+++|++||+++|+||||+|||++|+ +++++..++.||
T Consensus 176 ~~~l~~~i~-----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~~~pd 249 (396)
T PRK04073 176 LEALKAAIT-----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDNVTPD 249 (396)
T ss_pred HHHHHHhcc-----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcCCCCC
Confidence 567777664 37899999999999999999999999999999999999999999999999997 566677789999
Q ss_pred hhhhccccCC-CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIAN-GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++|+ |||+|++++++++++.+....+.+||++||+++++++++|+.++++++.+++++++++|.+.|++
T Consensus 250 i~~~sK~lg~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~l~~~~~~~~~~l~~~L~~ 325 (396)
T PRK04073 250 MYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEEKLPERSLELGEYFKEQLKE 325 (396)
T ss_pred EEEecccccCCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 9999999995 59999999999999988766678899999999999999999987778899999999999999875
No 78
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.97 E-value=4.9e-30 Score=224.67 Aligned_cols=147 Identities=24% Similarity=0.324 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccc-ccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~-~~~~~ 117 (195)
++++|+++|+++. +++++||+||++|+ .++++||++|+++|++||+++|+||||+||++++. +++ ++++.
T Consensus 173 d~~~l~~~l~~~~--~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~---g~~~~~gv~ 243 (431)
T PRK06209 173 DIASLEALFEDHP--GRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHMR---GAQKLYGIV 243 (431)
T ss_pred CHHHHHHHHHhCC--CCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcc---hhhHHhCCC
Confidence 4788999887653 58999999999987 77899999999999999999999999999976532 344 57999
Q ss_pred cchhhhccccCCCCceEEEEecHHHHHH--hhc----c--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 118 PDIVTMAKGIANGFPMGAVVTTTEIAQV--LTK----A--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~--l~~----~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
|||+|+||++|+|+|+|++++++++++. +.. . .+++|+++||++|++++++|+.++++++.+++++++++|+
T Consensus 244 PDi~t~gK~lggG~p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~ 323 (431)
T PRK06209 244 PDLSCFGKALGNGFAVSALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQGAKLA 323 (431)
T ss_pred cceeeehhhhcCCcccEEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 311 1 2678899999999999999999988889999999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 324 ~~L~~ 328 (431)
T PRK06209 324 AGVNE 328 (431)
T ss_pred HHHHH
Confidence 99865
No 79
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.96 E-value=8.2e-29 Score=216.51 Aligned_cols=157 Identities=31% Similarity=0.504 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..+++.|++++++....+++++||+||++|++|.++++++++++|+++|++||+++|.||+|+|+|++|. +++++..++
T Consensus 181 ~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~~ 259 (425)
T PRK08088 181 DDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMGV 259 (425)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcCC
Confidence 3457889998874211258999999999999999999999999999999999999999999999999997 667777899
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.|||.+|||++++|+|+|++++++++++.+....+.+|++++|+++++++++|+.++.+++.+++++.++++++.|++
T Consensus 260 ~pdi~s~sK~l~~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (425)
T PRK08088 260 AADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLA 337 (425)
T ss_pred CCCEEEEeccccCCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877788899999999999999999987778999999999999888864
No 80
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.96 E-value=1.4e-28 Score=212.97 Aligned_cols=149 Identities=36% Similarity=0.587 Sum_probs=134.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++||+||++|++|.+.++++||++|+++|++||+++|+||+|+|+|++|. +++.++.++.||
T Consensus 177 ~~~le~~i~-----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g~~~D 250 (401)
T PRK00854 177 AEALEAAIT-----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEGIEAD 250 (401)
T ss_pred HHHHHHHhC-----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcCCCCC
Confidence 577777764 36889999999999999999999999999999999999999999999999997 555566789999
Q ss_pred hhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++||++++| ||+|++++++++++.+....+..|++++|+++++++++|+.++++++.++++++++++.+.|++
T Consensus 251 ~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~l~~~~~~~~~~~~~~~l~~~L~~ 326 (401)
T PRK00854 251 VTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEGMIENAAEMGAYFLEGLRS 326 (401)
T ss_pred EEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 99999999977 6999999999999988766677889999999999999999987777899999999999999875
No 81
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.96 E-value=4.6e-28 Score=208.95 Aligned_cols=149 Identities=40% Similarity=0.660 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++++|++||+++++|..+++++++++|+++|++||++||+||+|+|||++|+ +++++..++.||
T Consensus 172 ~~~l~~~i~-----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~~~pd 245 (396)
T PRK02627 172 IEALKAAIT-----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYGIEPD 245 (396)
T ss_pred HHHHHHhcC-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcCCCCC
Confidence 577777763 47899999999999999999999999999999999999999999999999997 666777799999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++|||++++|+|+|++++++++++.+....+..|+++||+++++++++|+.++++++.++++++++++++.|++
T Consensus 246 i~t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (396)
T PRK02627 246 IMTLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLRE 320 (396)
T ss_pred EEEEcchhhCCcccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766677899999999999999999987778889999999999888765
No 82
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.95 E-value=5e-28 Score=208.05 Aligned_cols=149 Identities=32% Similarity=0.515 Sum_probs=134.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++|++||+++++|.+.++.+||++++++|+++|+++|+||+|+|+|++|. ++.++.+++.||
T Consensus 155 l~~l~~~l~-----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~~~pd 228 (375)
T PRK04260 155 LNSVKALVN-----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYGIEPD 228 (375)
T ss_pred HHHHHHhcC-----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhCCCCC
Confidence 677777663 37899999999999999999999999999999999999999999999999987 556667799999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++|||++++|+|+|++++++++++.+....+.+|+++||++++++.++|+.++.++++++++++++++++.|++
T Consensus 229 i~t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~ 303 (375)
T PRK04260 229 IFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQK 303 (375)
T ss_pred EEEecccccCCcceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988766688899999999999999999998778889999999998888764
No 83
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.95 E-value=9.6e-28 Score=207.51 Aligned_cols=151 Identities=37% Similarity=0.626 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|++.++ . +++++|++||+++++|.+.++++|+++|+++|++||+++|+||||+|+|++|+ ++..+..++.|
T Consensus 166 d~~~le~~l~-~---~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~~~p 240 (400)
T PTZ00125 166 DVEALEKLLQ-D---PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEGVKP 240 (400)
T ss_pred CHHHHHHHhC-C---CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcCCCC
Confidence 3688888886 1 47999999999999999999999999999999999999999999999999997 55666678999
Q ss_pred chhhhccccCCC-CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~~G-~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|++++||++++| +|+|++++++++++.+....+..|++++|++++++.++|+.++++++.++++++++++++.|++
T Consensus 241 d~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~~~~~~~~~~~~~~l~~~l~~ 317 (400)
T PTZ00125 241 DIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEEKLAENAQRLGEVFRDGLKE 317 (400)
T ss_pred CEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 999999999977 5999999999999988766677889999999999999999987778889999999999998865
No 84
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.95 E-value=1.8e-27 Score=206.06 Aligned_cols=155 Identities=41% Similarity=0.639 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..+++.|++.++++. +++++||+||+++++|.+.++++|+++|+++|++||+++|+||+|+|+|++|. ++.++.+++
T Consensus 175 ~~d~~~l~~~l~~~~--~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~~ 251 (413)
T cd00610 175 ADDLEALEEALEEHP--EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFGV 251 (413)
T ss_pred HHHHHHHHHHHhcCC--CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcCC
Confidence 346888999888653 48999999999999999999999999999999999999999999999999987 556677789
Q ss_pred CcchhhhccccCCCCceEEEEecHHHHHHh--hccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVL--TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l--~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.||++++||++++|+|+|++++++++++.+ ....+.+|++++|++++++.++|+.++++++.++++++++++++.|++
T Consensus 252 ~~d~~t~sK~l~~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~ 331 (413)
T cd00610 252 EPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRE 331 (413)
T ss_pred CCCeEEEcccccCccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 999999999999899999999999999986 344467889999999999999999987778899999999999998875
No 85
>KOG1405|consensus
Probab=99.93 E-value=1.3e-25 Score=186.72 Aligned_cols=155 Identities=28% Similarity=0.405 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc
Q psy13322 33 CEASNKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF 111 (195)
Q Consensus 33 ~~~~~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~ 111 (195)
...+..|++++|++|.++..+ ..||++|||||||+||+...+++|+++|+++|+|||+.+|+||||||.|-||+ +|+.
T Consensus 248 ~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaH 326 (484)
T KOG1405|consen 248 KKEDQGCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAH 326 (484)
T ss_pred hhhhhhHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeee
Confidence 344778999999999987644 38999999999999999999999999999999999999999999999999998 9999
Q ss_pred cccCC--CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy13322 112 EMHGV--SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188 (195)
Q Consensus 112 ~~~~~--~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l 188 (195)
+++++ .||++||||.|- +|+ .- .++++.. ....+.+||.+.|.-+....++++++.++++.+++...|+.|
T Consensus 327 ehw~l~~PpD~vTFSKK~q~gGf----fh-~~~frpn-~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l 400 (484)
T KOG1405|consen 327 EHWNLDSPPDVVTFSKKFQTGGF----FH-DEEFRPN-EPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKAL 400 (484)
T ss_pred hhcCCCCCccceehhhhhhcCcc----cc-CcccCCC-chHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99976 689999999997 452 22 2222111 011256899999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
..+|.+
T Consensus 401 ~~gL~~ 406 (484)
T KOG1405|consen 401 LKGLLE 406 (484)
T ss_pred HHHHHH
Confidence 999865
No 86
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.92 E-value=2.5e-24 Score=184.64 Aligned_cols=149 Identities=42% Similarity=0.676 Sum_probs=131.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++|++||+++++|...++.+++++|.++|++||+++|+||+|++||+.|. ++.+...++.||
T Consensus 160 ~~~l~~~~~-----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~~~~d 233 (379)
T TIGR00707 160 IESLKKAID-----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGIEPD 233 (379)
T ss_pred HHHHHHHhh-----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcCCCCC
Confidence 677777775 25779999999999998888999999999999999999999999999998886 445555688999
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++|||++++|+|+|++++++++++.+.......+++.++++++++.++|+.++..++.+++++++++++++|++
T Consensus 234 ~~t~sK~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (379)
T TIGR00707 234 IITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKERLLENVKEKGDYFKERLEE 308 (379)
T ss_pred EEEEcccccCCcccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998776667788899999999999999887677889999999999998864
No 87
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.91 E-value=1e-23 Score=181.15 Aligned_cols=146 Identities=19% Similarity=0.288 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCC
Q psy13322 40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~ 117 (195)
+++|++.|++....+ +...|++|+|+||+|++.+ |++|.+++++|+++|++||+|+ +|..|+++.++ +++|+.
T Consensus 155 ~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa-~Gv~G~~GrG~~e~~g~~ 229 (388)
T COG0156 155 LDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHA-VGVLGPNGRGLAEHFGLE 229 (388)
T ss_pred HHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEcccc-ccccCCCCccHHHHhCCC
Confidence 799999998743111 4679999999999999999 9999999999999999999998 77777544444 677886
Q ss_pred cc-----hhhhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322 118 PD-----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI 188 (195)
Q Consensus 118 pd-----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l 188 (195)
++ +.||||+|| .| |++.+++.+.+++.+.+ +.+|.+.+|..++++.++|+.+++ ++.+++++++..++
T Consensus 230 ~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~ 306 (388)
T COG0156 230 PEEVDIIVGTLGKALGSSG---GYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFF 306 (388)
T ss_pred CccceEEEEEchhhhcccC---ceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 54 348899999 45 79999999999998875 677778899999999999999965 78899999999999
Q ss_pred HHHhh
Q psy13322 189 IGYLR 193 (195)
Q Consensus 189 ~~~L~ 193 (195)
++.++
T Consensus 307 ~~~~~ 311 (388)
T COG0156 307 RSLLK 311 (388)
T ss_pred HHHHH
Confidence 86654
No 88
>PLN02822 serine palmitoyltransferase
Probab=99.89 E-value=2.5e-22 Score=178.16 Aligned_cols=130 Identities=23% Similarity=0.231 Sum_probs=111.0
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc--CccccCCCcccccccCC---Ccchhh--hccccC
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT--GFGRTGDNYWGFEMHGV---SPDIVT--MAKGIA 128 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~--g~gr~G~~~~~~~~~~~---~pdi~~--~sK~l~ 128 (195)
.++||+|++++++|++.+ |++|+++|++||++||+||+|+ .+|++|. + ..+++++ .+||++ |||++|
T Consensus 246 ~~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~-G-~~e~~~v~~~~~dii~~s~sKalg 319 (481)
T PLN02822 246 RRYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR-G-LSEHFGVPIEKIDIITAAMGHALA 319 (481)
T ss_pred cEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-C-hHHHcCCCCCCCeEEEecchhhhh
Confidence 389999999999999988 9999999999999999999998 3455564 2 4577777 678876 789998
Q ss_pred -CCCceEEEEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 129 -NGFPMGAVVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 129 -~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
.| |++++++++++.++...+.++|+++ |..++|++++|+.+++ +++++++++++++|++.|++
T Consensus 320 ~~G---G~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~ 386 (481)
T PLN02822 320 TEG---GFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD 386 (481)
T ss_pred hCC---eEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh
Confidence 44 7899999999998877777788765 8899999999998865 78899999999999999975
No 89
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.88 E-value=3.2e-22 Score=175.67 Aligned_cols=143 Identities=13% Similarity=0.062 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p 118 (195)
+++|+++|++.. ++.++||+|+|+||+|++++ |++|.++|++||++||+||+|+ +|+.|..+.+ .+++|+.+
T Consensus 236 ~~~Le~~L~~~~--~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~-~Gv~G~~G~G~~e~~g~~~ 308 (476)
T PLN02955 236 MYHLNSLLSSCK--MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHG-TFVCGENGGGVAEEFNCEA 308 (476)
T ss_pred HHHHHHHHHhCC--CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEccccc-CceecCCCCcHHHHhCCCC
Confidence 799999998764 35678999999999999998 9999999999999999999998 4455542223 46778877
Q ss_pred ch----hhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy13322 119 DI----VTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGY 191 (195)
Q Consensus 119 di----~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~ 191 (195)
|+ .||||++|. ..|++++++++++.+.+.. +.++.+.+|..+++++++++.+. .+..+++++++.++|++.
T Consensus 309 di~ii~~TLsKA~G~--~GGfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~ 386 (476)
T PLN02955 309 DVDLCVGTLSKAAGC--HGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL 386 (476)
T ss_pred CCcEEEEeCccchhc--cCceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 75 588999981 1257999999999998665 44455667788888999999884 456789999999999874
No 90
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.85 E-value=2.1e-20 Score=162.06 Aligned_cols=135 Identities=21% Similarity=0.200 Sum_probs=108.6
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccccccCCCc----chhhhccccCC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMHGVSP----DIVTMAKGIAN 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~~~~p----di~~~sK~l~~ 129 (195)
+..+|++||++|++|.+++ |++|+++|++||+++|+||+|+ +|+.|+. .+..+++|+.| ||+++|++-+.
T Consensus 138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~-~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~ 212 (392)
T PLN03227 138 QRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFS-FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF 212 (392)
T ss_pred CcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECccc-ccccCCCCCcHHHHcCCCCCCCceEEEeechhhh
Confidence 5779999999999999888 9999999999999999999998 5554431 13568889998 98887633333
Q ss_pred CCceEEEEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHhhc
Q psy13322 130 GFPMGAVVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDV-IKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 130 G~~~g~v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~-~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+.+|++++++++++.+....+.++|+++ |+.++|++++++. ++.+++++++++++++|++.|++
T Consensus 213 g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 213 GSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred hccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 45567888999998887766666777765 8888888888865 45678999999999999999963
No 91
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.84 E-value=4.8e-20 Score=159.97 Aligned_cols=145 Identities=21% Similarity=0.266 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~- 116 (195)
+++|+++++...+ +++++|++|++++++|++.+ +++|+++|++||++||+||+|+ | +|+.|. ++ .++.++
T Consensus 164 ~~~le~~l~~~~~-~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~~~~ 236 (407)
T PRK09064 164 VAHLEELLAAADP-DRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERDGLM 236 (407)
T ss_pred HHHHHHHHHhccC-CCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhcCCC
Confidence 5778888775422 36789999999999999887 9999999999999999999998 6 477765 32 344454
Q ss_pred -Ccchh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322 117 -SPDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII 189 (195)
Q Consensus 117 -~pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~ 189 (195)
.+|++ ||||++| .| |++++++++++.+.... +.++.+.+|.++++++++++.+++ +..++++++++++|.
T Consensus 237 ~~~div~~t~sKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~ 313 (407)
T PRK09064 237 DRIDIIEGTLAKAFGVMG---GYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKESNEERERHQERAAKLK 313 (407)
T ss_pred CCCeEEEEecchhhhccC---ceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 56777 9999998 23 68889999988876543 344667889999999999998865 445688999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 314 ~~L~~ 318 (407)
T PRK09064 314 AALDA 318 (407)
T ss_pred HHHHH
Confidence 99875
No 92
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.82 E-value=2e-19 Score=155.99 Aligned_cols=146 Identities=20% Similarity=0.246 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~- 116 (195)
.++++++++...+ +++++|++|++++++|.+.+ +++|+++|++||++||+||+|+ | +|..|. + ..+..++
T Consensus 163 ~~~l~~~l~~~~~-~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g-~~~~~~~~ 235 (402)
T TIGR01821 163 VAHLEKLLQSVDP-NRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-G-IAERDGLM 235 (402)
T ss_pred HHHHHHHHHhccC-CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-c-cchhccCC
Confidence 5677887775432 36789999999999999887 9999999999999999999998 4 234443 1 1344454
Q ss_pred -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
.+|++ +|||+++. +.|++++++++++.+.... +.+|++.+|.++++++++|+.+++ +.+.++++++++++.+
T Consensus 236 ~~~div~~t~sKa~g~--~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~ 313 (402)
T TIGR01821 236 HRIDIIEGTLAKAFGV--VGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKN 313 (402)
T ss_pred CCCeEEEEechhhhcc--CCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 46776 99999982 1267889999999887543 345667899999999999998865 4567778899999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 314 ~L~~ 317 (402)
T TIGR01821 314 LLEA 317 (402)
T ss_pred HHHH
Confidence 8875
No 93
>KOG1360|consensus
Probab=99.81 E-value=2.3e-19 Score=151.63 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~ 114 (195)
-.+++.+|+++|++..+ ...+.|-+|+|+||+|.+++ |++|.++++|||++-.+||||+ .|..|.++.+. ++-
T Consensus 285 rHND~~hL~~lL~~~~~-svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA-VGlYG~rGaGvgerd 358 (570)
T KOG1360|consen 285 RHNDLDHLEQLLQSSPK-SVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA-VGLYGPRGAGVGERD 358 (570)
T ss_pred ccCCHHHHHHHHHhCCC-CCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh-hccccCCCCCccccC
Confidence 33448999999998754 47778999999999999999 9999999999999999999998 77777644444 555
Q ss_pred CC--Ccchh--hhccccCC-CCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHH
Q psy13322 115 GV--SPDIV--TMAKGIAN-GFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQV 184 (195)
Q Consensus 115 ~~--~pdi~--~~sK~l~~-G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~ 184 (195)
|+ +.||+ |+||+||+ | ||+.++..+++.++..+ +.+|++.+|..++.|+++++++.. ..++..-+++
T Consensus 359 Gvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrn 435 (570)
T KOG1360|consen 359 GVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRN 435 (570)
T ss_pred Ccchhhhhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 66 55776 88999993 3 68999999999998876 778889999999999999999853 3566667788
Q ss_pred HHHHHHHhhc
Q psy13322 185 SAQIIGYLRV 194 (195)
Q Consensus 185 ~~~l~~~L~~ 194 (195)
..++++.|.+
T Consensus 436 v~~~kq~l~~ 445 (570)
T KOG1360|consen 436 VKYVKQLLME 445 (570)
T ss_pred HHHHHHHHHH
Confidence 8888888764
No 94
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.81 E-value=8.7e-19 Score=152.28 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=113.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~~ 117 (195)
.+++++.++...+ .++++|++|++++++|.+.+ +++|.++|++||+++|+||+|+ |+ |++|. ++ .++.++.
T Consensus 163 ~~~l~~~l~~~~~-~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~~~ 235 (406)
T PRK13393 163 PADLERKLSDLDP-HRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREGLA 235 (406)
T ss_pred HHHHHHHHHhccC-CCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcCCC
Confidence 4667777765432 36789999999999999988 9999999999999999999998 65 77775 22 3455554
Q ss_pred --cchh--hhccccC-CCCceEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322 118 --PDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII 189 (195)
Q Consensus 118 --pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~ 189 (195)
+||+ +|||++| .| |++++++++++.+..... .+|++.+|.+++++.++|+.+++ ...++++++++++|+
T Consensus 236 ~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~ 312 (406)
T PRK13393 236 DRLTIIEGTLAKAFGVMG---GYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKASSAERERHQDRVARLR 312 (406)
T ss_pred CCCeEEEEeCchhhcccC---ceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 5666 8999998 34 688889999888876543 34667899999999999998754 334577889999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 313 ~~L~~ 317 (406)
T PRK13393 313 ARLDK 317 (406)
T ss_pred HHHHH
Confidence 98875
No 95
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.76 E-value=9.1e-18 Score=145.65 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p 118 (195)
.+.|++.+. .++++|++....+.+|. +.++++|++|+++|++||++||+||+|.+|.+.|..+.+. +..+...
T Consensus 153 ~~~l~~~i~-----~ktk~i~ln~P~NPTGa-v~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~ 226 (393)
T COG0436 153 LEDLEAAIT-----PKTKAIILNSPNNPTGA-VYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARD 226 (393)
T ss_pred HHHHHhhcC-----ccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcc
Confidence 577777766 36779999999999995 6678999999999999999999999999998888423333 2222111
Q ss_pred c---hhhhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHH
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQII 189 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~ 189 (195)
. +-.|||+++ +|||+||++++ +++++.+.......+++.+.++|.|+.++|+.-++ +..++.++++++.+.
T Consensus 227 ~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~ 306 (393)
T COG0436 227 RTITINSFSKTYGMTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLV 306 (393)
T ss_pred eEEEEecccccccccccceeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHH
Confidence 2 347799999 99999999999 78888887665667778999999999999986521 445578999999999
Q ss_pred HHhhcC
Q psy13322 190 GYLRVV 195 (195)
Q Consensus 190 ~~L~~l 195 (195)
+.|+++
T Consensus 307 ~~l~~~ 312 (393)
T COG0436 307 EALNEI 312 (393)
T ss_pred HHHHhc
Confidence 999853
No 96
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.75 E-value=1.7e-17 Score=139.74 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++||+.+.+ .++..+|+-...+.+| ++|+.++|.+|.+||++||+++|+||||+.+...|..++.+.. +.|
T Consensus 146 D~~~LE~~~~~----~~vkl~iLCnPHNP~G-rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~--ls~ 218 (388)
T COG1168 146 DFDALEKAFVD----ERVKLFILCNPHNPTG-RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS--LSE 218 (388)
T ss_pred cHHHHHHHHhc----CCccEEEEeCCCCCCC-ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh--cCh
Confidence 47999999885 3666777777778888 7999999999999999999999999999999888843555432 333
Q ss_pred c----hh-hh--ccccC-CCCceEEEEecH-HHHHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q psy13322 119 D----IV-TM--AKGIA-NGFPMGAVVTTT-EIAQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSA 186 (195)
Q Consensus 119 d----i~-~~--sK~l~-~G~~~g~v~~~~-~i~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~ 186 (195)
+ .+ ++ ||+|+ .|+.+|+++.++ ++++.+.... .....+.|.+++.|..+|++..+. ++++++++.|.+
T Consensus 219 ~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~ 298 (388)
T COG1168 219 RFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRD 298 (388)
T ss_pred hhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence 2 22 22 69999 899998877765 5655554433 445567799999999999999876 889999999999
Q ss_pred HHHHHhhc
Q psy13322 187 QIIGYLRV 194 (195)
Q Consensus 187 ~l~~~L~~ 194 (195)
++.+.|++
T Consensus 299 ~~~~~l~~ 306 (388)
T COG1168 299 YVADFLNK 306 (388)
T ss_pred HHHHHHHh
Confidence 99999875
No 97
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.72 E-value=8.2e-17 Score=140.01 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGV- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~- 116 (195)
.+.+++.++.... +++++|++|++++++|.+.+ +++|.++|++||+++|+||+|+ |+ |..|. +. .+..++
T Consensus 164 ~~~l~~~l~~~~~-~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~~~ 236 (410)
T PRK13392 164 LADLEEQLASVDP-DRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDGLM 236 (410)
T ss_pred HHHHHHHHHhccC-CCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhccCC
Confidence 4556666665432 37789999999999999887 9999999999999999999998 43 44443 21 233344
Q ss_pred -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
.+|++ ++||++|. +.|++++++++++.++... +.++.+.+|++++++.++|+.++. ....+++++++++|++
T Consensus 237 ~~~div~~tlsK~~g~--~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~ 314 (410)
T PRK13392 237 DRIDMIQGTLAKAFGC--LGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKA 314 (410)
T ss_pred CCCcEEEEEChHhhhc--ccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45665 88999982 2278888999988877654 234556788899999999998754 4556778999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 315 ~L~~ 318 (410)
T PRK13392 315 KLNA 318 (410)
T ss_pred HHHH
Confidence 8875
No 98
>PRK07505 hypothetical protein; Provisional
Probab=99.72 E-value=1e-16 Score=139.08 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc--cCccccCCCcccccccCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ--TGFGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~--~g~gr~G~~~~~~~~~~~- 116 (195)
++.|++++.. +..++||+||++++ |.+.+ +++|+++|++||++||+||+| +++|++|. ++..++++.
T Consensus 169 ~~~l~~~~~~----~~~~~vl~~p~~~~-G~~~~----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~~~ 238 (402)
T PRK07505 169 LDALEDICKT----NKTVAYVADGVYSM-GGIAP----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELDYR 238 (402)
T ss_pred HHHHHHHHhc----CCCEEEEEeccccc-CCcCC----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcCCC
Confidence 5777777753 25679999999977 44555 899999999999999999998 56788886 455566776
Q ss_pred Ccchh----hhccccCCCCceEEEEe-cHHHHHHhhccccccCCCc--hHHHHHHHHHHHHhhcc---hhHHHHHHHHHH
Q psy13322 117 SPDIV----TMAKGIANGFPMGAVVT-TTEIAQVLTKAAHFNTFGG--NPVGCVIASTVLDVIKD---EELQYNCKQVSA 186 (195)
Q Consensus 117 ~pdi~----~~sK~l~~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~--~p~~~~aa~aal~~~~~---~~~~~~l~~~~~ 186 (195)
.||.+ ++||+++++ +|+++. ++++++.+....+.+||++ +++++++++++++.+.+ .++.++++++..
T Consensus 239 ~~d~~i~~~s~sK~~~~~--Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~ 316 (402)
T PRK07505 239 LNERTIIAASLGKAFGAS--GGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIA 316 (402)
T ss_pred CCCCeEEEEechhhhhcc--CeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 67744 789999843 366664 6788888877666677755 46899999999996643 344555666655
Q ss_pred HHHH
Q psy13322 187 QIIG 190 (195)
Q Consensus 187 ~l~~ 190 (195)
.+..
T Consensus 317 ~~~~ 320 (402)
T PRK07505 317 LFDS 320 (402)
T ss_pred HHHH
Confidence 5433
No 99
>KOG1359|consensus
Probab=99.72 E-value=7.9e-17 Score=131.88 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCC--
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGV-- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~-- 116 (195)
+-+|+..+..... .+...|+.|+++||+|++.| |++|.+|++|||+++++||.|+ .|+.|..+.+ .+.+|+
T Consensus 179 v~~l~~~l~~a~k-~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHa-Tgf~G~tGrGt~E~~~vm~ 252 (417)
T KOG1359|consen 179 VFDLEHCLISACK-MRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHA-TGFFGETGRGTAEEFGVMG 252 (417)
T ss_pred hHHHHHHHHHhhh-heEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeeccc-ceeecCCCCChHHHhCCCC
Confidence 5677777665433 58999999999999999999 9999999999999999999996 3334432223 366675
Q ss_pred Ccchh--hhccccCCCCceEEEEecHHHHHHhhcccccc--CCCchHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHH
Q psy13322 117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN--TFGGNPVGCVIASTVLDVI-KDEELQYNCKQVSAQIIGY 191 (195)
Q Consensus 117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~--t~~~~p~~~~aa~aal~~~-~~~~~~~~l~~~~~~l~~~ 191 (195)
.+||+ |+||++||. ..||+.++++++..+++....+ +.+.+|.....+.++++.+ .......+.+.+.+++++.
T Consensus 253 ~vdiinsTLgKAlGga-~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~ 331 (417)
T KOG1359|consen 253 DVDIINSTLGKALGGA-SGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREF 331 (417)
T ss_pred cceehhhhhhhhhcCC-CCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56665 889999831 2479999999999998876444 4455777778888999976 4567788888888888876
Q ss_pred hh
Q psy13322 192 LR 193 (195)
Q Consensus 192 L~ 193 (195)
..
T Consensus 332 me 333 (417)
T KOG1359|consen 332 ME 333 (417)
T ss_pred HH
Confidence 54
No 100
>PLN02483 serine palmitoyltransferase
Probab=99.71 E-value=3.3e-16 Score=139.44 Aligned_cols=130 Identities=23% Similarity=0.315 Sum_probs=99.5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCCCc---chh--hhccccC
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGVSP---DIV--TMAKGIA 128 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~~p---di~--~~sK~l~ 128 (195)
...|++|+++++.|.+.+ +++|.++|++||++||+||+|+ | +|++|.+ ..+.+++.| ||+ +|||++|
T Consensus 241 k~livve~v~s~~G~~~~----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g--~~~~~~v~~~~~dI~~~SfSKs~g 314 (489)
T PLN02483 241 KIIVIVEGIYSMEGELCK----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG--VCELLGVDPADVDIMMGTFTKSFG 314 (489)
T ss_pred eEEEEECCCCCCCCcccC----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc--hHHhcCCCcccCcEEEEecchhcc
Confidence 458999999999999987 9999999999999999999997 1 3444431 234556544 555 8899998
Q ss_pred -CCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHHHHhhc
Q psy13322 129 -NGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD-------EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 129 -~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~-------~~~~~~l~~~~~~l~~~L~~ 194 (195)
.| |++++++++++.+.......++ +.+|..+++++++|+.+.. .+.++++++++++|++.|++
T Consensus 315 ~~G---G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~ 387 (489)
T PLN02483 315 SCG---GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQK 387 (489)
T ss_pred cCc---eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44 8999999999998876544333 3467777778888886531 24678899999999999975
No 101
>PRK07179 hypothetical protein; Provisional
Probab=99.70 E-value=3.5e-16 Score=135.91 Aligned_cols=146 Identities=15% Similarity=0.184 Sum_probs=107.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcc-cccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYW-GFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~-~~~~~~~~ 117 (195)
++++|++.+++. +.++|++|++++++|.+.+ +++|+++|++||++||+||+|+ +|+.|..+. .+..+++.
T Consensus 169 d~~~l~~~l~~~----~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~-~g~~g~~g~g~~~~~~~~ 239 (407)
T PRK07179 169 DVDHLRRQIERH----GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHS-LGTHGPQGAGLVAELGLT 239 (407)
T ss_pred CHHHHHHHHHhc----CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECccc-ccCcCCCCCchHHhcCCC
Confidence 468888888642 4578999999999999888 8999999999999999999998 444332111 13445654
Q ss_pred c--chhh--hccccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 118 P--DIVT--MAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 118 p--di~~--~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
+ |+++ +||++++ ++|++++++++++.+...... ++.+.++..++++.++++.++. +++++++++++++|++
T Consensus 240 ~~vdi~~~S~sK~~g~--~~G~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~ 317 (407)
T PRK07179 240 SRVHFITASLAKAFAG--RAGIITCPRELAEYVPFVSYPAIFSSTLLPHEIAGLEATLEVIESADDRRARLHANARFLRE 317 (407)
T ss_pred CCCCEEEeechHhhhc--cCeEEEeCHHHHHHHHHhCcCeeeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 3 7654 6899974 589999999988877643221 1222245666677788888754 4678999999999999
Q ss_pred HhhcC
Q psy13322 191 YLRVV 195 (195)
Q Consensus 191 ~L~~l 195 (195)
.|+++
T Consensus 318 ~L~~~ 322 (407)
T PRK07179 318 GLSEL 322 (407)
T ss_pred HHHHc
Confidence 99753
No 102
>KOG0257|consensus
Probab=99.69 E-value=1.4e-16 Score=135.51 Aligned_cols=150 Identities=19% Similarity=0.182 Sum_probs=116.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p 118 (195)
.+.|+..+. .+..+||+.+..+..|. +.++++|++|+++|++||+++|+||||.-+-+.|..+..+.. -|+..
T Consensus 162 ~~~le~~~t-----~kTk~Ii~ntPhNPtGk-vfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~e 235 (420)
T KOG0257|consen 162 PEELESKIT-----EKTKAIILNTPHNPTGK-VFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYE 235 (420)
T ss_pred hHHHHhhcc-----CCccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhh
Confidence 577888777 46778999999999995 667899999999999999999999999988788853433322 24433
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c-------hhHHHHHHHH
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D-------EELQYNCKQV 184 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~-------~~~~~~l~~~ 184 (195)
. +-.+||+++ +||++||+++++.+...+........+..++..+.|..+++..-. + .++...++++
T Consensus 236 rtitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~k 315 (420)
T KOG0257|consen 236 RTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEK 315 (420)
T ss_pred eEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHH
Confidence 3 345689999 999999999988898888777666667666666666666665422 1 3477889999
Q ss_pred HHHHHHHhhcC
Q psy13322 185 SAQIIGYLRVV 195 (195)
Q Consensus 185 ~~~l~~~L~~l 195 (195)
++.|.+.|.++
T Consensus 316 rdil~k~L~~l 326 (420)
T KOG0257|consen 316 RDILAKALEEL 326 (420)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 103
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.69 E-value=6.4e-16 Score=133.22 Aligned_cols=149 Identities=19% Similarity=0.247 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCC-
Q psy13322 40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGV- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~- 116 (195)
+++|++.+.+... +.++++|+++++++++|.+.+ +++|.++|++||++||+||+|+ +|..|..+.+ .+..++
T Consensus 154 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~-~g~~~~~~~~~~~~~~~~ 228 (393)
T TIGR01822 154 MADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHA-TGFLGPTGRGSHELCGVM 228 (393)
T ss_pred HHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCcc-ccCcCCCCCchHHhcCCC
Confidence 5778887775321 126789999999999998877 9999999999999999999995 5444421111 223344
Q ss_pred -Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 117 -SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 117 -~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
.+|++ ++||+++ |+++|++++++++++.+......+.+ +.++..+++++++++.++. +++.++++++++++++
T Consensus 229 ~~~di~~~s~sK~l~-g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 307 (393)
T TIGR01822 229 GRVDIITGTLGKALG-GASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRE 307 (393)
T ss_pred CCCeEEEEEChHHhh-CCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35665 6789987 57899999999999888664322222 3456777788899987744 5788999999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 308 ~L~~ 311 (393)
T TIGR01822 308 RMEA 311 (393)
T ss_pred HHHH
Confidence 8874
No 104
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.68 E-value=3.2e-16 Score=134.36 Aligned_cols=144 Identities=17% Similarity=0.228 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+.+. +..+|++...++++|...+ ++++.++++.++++||+||+|++|++.|. .......+..|+
T Consensus 149 ~~~l~~~~~~~----~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~~~~~ 219 (368)
T PRK03317 149 VDAAVAAIAEH----RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLPEYPR 219 (368)
T ss_pred HHHHHHHHhcc----CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHHhCCC
Confidence 57788777643 3345667777899998776 66666777777899999999999977664 222333344567
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +|||++| +|+|+||+++++++++.+.... .+++.++++++++.++|+..+. .+..++++++++++.+.|++
T Consensus 220 ~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 297 (368)
T PRK03317 220 LVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHADELLASVAALRAERDRVVAWLRE 297 (368)
T ss_pred EEEEEechhhhccchhhhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 8899998 8999999999999999887543 3567889999999999976432 33456677778888877764
No 105
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.67 E-value=1.6e-15 Score=129.89 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=108.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~~ 117 (195)
++.+++.++... .+.++|+++++++.+|...+ +++|.++|++||++||+||+|+ | +++.|..+.........
T Consensus 155 ~~~l~~~i~~~~--~~~~lvi~~~~~~~~G~~~~----l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~ 228 (385)
T PRK05958 155 VDALEALLAKWR--AGRALIVTESVFSMDGDLAP----LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGE 228 (385)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEecccCCCCcCC----HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCC
Confidence 577888886532 25778999999999997766 9999999999999999999996 2 33344321111112234
Q ss_pred cc---hhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q psy13322 118 PD---IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 118 pd---i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~ 191 (195)
++ +.++||+++. +.|++++++++++.+.... +..+.+.++++++++.++|+.++. +++.+++.++++++.+.
T Consensus 229 ~~~i~~~s~sK~~~~--~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~ 306 (385)
T PRK05958 229 PDVILVGTLGKALGS--SGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAALIARLRAG 306 (385)
T ss_pred CceEEEEechhhccc--CCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 56 4578999983 2378899988888775432 334456788999999999998765 57889999999999999
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 307 L~~ 309 (385)
T PRK05958 307 LRA 309 (385)
T ss_pred HHH
Confidence 875
No 106
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.66 E-value=2.8e-15 Score=128.91 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-ccccCCCcccccccC-
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-G-FGRTGDNYWGFEMHG- 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~- 115 (195)
+++|+++|+...+. ++..+|+++++++++|.+.+ +++|.++|+++|+++++||+|+ | +|+.|. ++ ...++
T Consensus 127 ~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~-~~~~~~ 200 (370)
T PRK05937 127 LDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GF-CHSLGY 200 (370)
T ss_pred HHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-HHhhCC
Confidence 68888888754211 24557889999999999998 9999999999999999999998 3 455554 21 11223
Q ss_pred --CCcchhhhccccCC-CCceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322 116 --VSPDIVTMAKGIAN-GFPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI 188 (195)
Q Consensus 116 --~~pdi~~~sK~l~~-G~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l 188 (195)
..+++.++||++|. | +++++.+++.+.+... .+.++.+.+|.+++++.++++.+.+ +...++++++.++|
T Consensus 201 ~~~~~~~~tlsK~~g~~G---~~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l 277 (370)
T PRK05937 201 ENFYAVLVTYSKALGSMG---AALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYF 277 (370)
T ss_pred CCCcEEEEechhhhhcCc---eEEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 23577899999983 5 5567777766655432 2444556788888888899998854 45678899999999
Q ss_pred HHHhh
Q psy13322 189 IGYLR 193 (195)
Q Consensus 189 ~~~L~ 193 (195)
.+.|+
T Consensus 278 ~~~l~ 282 (370)
T PRK05937 278 AQKFS 282 (370)
T ss_pred HHhcC
Confidence 88775
No 107
>PLN00175 aminotransferase family protein; Provisional
Probab=99.66 E-value=1.9e-15 Score=131.80 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++.+. .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+.+.+. +.++..+ +..+
T Consensus 177 ~~~l~~~~~-----~~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~-~~s~~~~~~~~~ 249 (413)
T PLN00175 177 EDELKAAFT-----SKTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLAFEGD-HISMASLPGMYE 249 (413)
T ss_pred HHHHHHhcC-----cCceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccccCCc-ccChhhCCCCcC
Confidence 566777664 25667888888888996 56789999999999999999999999998765443 2233222 3223
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
. +-+|||.++ .|||+||+++++++++.+.......+++.+++.+.++.++|+..+. +++++.++++++.+.+.|
T Consensus 250 ~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 329 (413)
T PLN00175 250 RTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGL 329 (413)
T ss_pred cEEEEecchhhccCcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 337799999 8999999999999998887665555678888999999999975422 567788999999999988
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 330 ~~ 331 (413)
T PLN00175 330 KE 331 (413)
T ss_pred HH
Confidence 65
No 108
>PRK07682 hypothetical protein; Validated
Probab=99.65 E-value=8e-16 Score=132.27 Aligned_cols=148 Identities=14% Similarity=0.217 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p 118 (195)
++.|++.+. +++++|++....+.+|. +++.+.+++|.++|++|++++|+||+|..+.+.+. +.++.. .+..+
T Consensus 144 ~~~l~~~~~-----~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 216 (378)
T PRK07682 144 PAQIEAAIT-----AKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA-YTSFASIKGMRE 216 (378)
T ss_pred HHHHHhhcC-----cccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC-CCChhhcccccC
Confidence 566776654 24566766666788886 66788999999999999999999999998876553 323221 12223
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L 192 (195)
. +.+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.++|+..+ .+++++.++++++++.+.|
T Consensus 217 ~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 296 (378)
T PRK07682 217 RTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSF 296 (378)
T ss_pred CEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3 447799999 899999999999999988765444456678899999999997542 2466788899999999988
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 297 ~~ 298 (378)
T PRK07682 297 NE 298 (378)
T ss_pred HH
Confidence 75
No 109
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.64 E-value=4e-15 Score=127.85 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~~ 117 (195)
.+++++.+.+... .+.++|+++++++++|.+.+ +++|.++|++||+++|+||+|+. +++.|. . ....+++.
T Consensus 149 ~~~l~~~l~~~~~-~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~-~~~~~~~~ 221 (385)
T TIGR01825 149 MDDLDRVLRENPS-YGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR-G-TVHHFGLE 221 (385)
T ss_pred HHHHHHHHHhhcc-CCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-c-cHhhcCCC
Confidence 4567777765432 36789999999999998776 89999999999999999999963 333343 1 23334554
Q ss_pred cc----hhhhccccCCCCceEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 118 PD----IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 118 pd----i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
+| +.++||+++ .+.|++++++++++.+..... ..+...+|..++++.++++.+.+ .+..++++++++++.+
T Consensus 222 ~~~~i~~~s~sK~~~--~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 299 (385)
T TIGR01825 222 DKVDIQVGTLSKAIG--VVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKA 299 (385)
T ss_pred cCCcEEEEeccHHhh--cCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 55 358899997 234788889998888865432 22334578888999999987643 5678889999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 300 ~L~~ 303 (385)
T TIGR01825 300 GLGK 303 (385)
T ss_pred HHHH
Confidence 8875
No 110
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.64 E-value=6.3e-15 Score=124.88 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p 118 (195)
++.|++.++.... .+.++|+++++++++|...+ +++|.++|++||++||+||+|+ +|..+....+ ...+++.+
T Consensus 132 ~~~l~~~~~~~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~~~~ 205 (360)
T TIGR00858 132 VEHLERLLEKNRG-ERRKLIVTDGVFSMDGDIAP----LPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFGLKP 205 (360)
T ss_pred HHHHHHHHHHccc-CCCeEEEEeCCccCCCCCcC----HHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcCCCc
Confidence 5778888875421 25789999999999997776 9999999999999999999997 4443321112 23345554
Q ss_pred c-----hhhhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q psy13322 119 D-----IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIG 190 (195)
Q Consensus 119 d-----i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~ 190 (195)
+ +.++||+++. +.|++++++++++.+.... +..+.+.++.+++++.++++.++. +++.++++++++++.+
T Consensus 206 ~~~~i~i~s~sK~~~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~ 283 (360)
T TIGR00858 206 EPVDIQVGTLSKALGS--YGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLALIARLRA 283 (360)
T ss_pred cCCcEEEEechhhhhc--cCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 4 4578999983 2378999999888775433 223345677888888999987654 5678999999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 284 ~L~~ 287 (360)
T TIGR00858 284 GLEA 287 (360)
T ss_pred HHHH
Confidence 9875
No 111
>PRK07324 transaminase; Validated
Probab=99.63 E-value=4e-15 Score=128.13 Aligned_cols=146 Identities=16% Similarity=0.224 Sum_probs=108.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++....+.+|. +.+++.+++|.++|++||+++|+||+|.++.+.+. ..+.. ...++
T Consensus 143 ~~~l~~~~~-----~~~kli~i~~p~NPtG~-~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~-~~s~~--~~~~~ 213 (373)
T PRK07324 143 LDELRRLVR-----PNTKLICINNANNPTGA-LMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGS-TPSIA--DLYEK 213 (373)
T ss_pred HHHHHHhCC-----CCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCC-CCChh--hccCC
Confidence 466666543 25567888888888885 55788899999999999999999999998866443 22221 12222
Q ss_pred ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhh
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~ 193 (195)
+.+|||.++ .|||+||+++++++++.+.......+++.+++++.++..+|+..+. +..++.++++.+.+.+.|+
T Consensus 214 ~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 293 (373)
T PRK07324 214 GISTNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYTMICAGVFDDMLASLALEHRDAILERNRKIVRTNLAILDEWVA 293 (373)
T ss_pred EEEEecchhhcCCccceeEEEecCHHHHHHHHHHhCcEEecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 447899999 8999999999999999888766556677788888888888864322 4556667778888877765
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 294 ~ 294 (373)
T PRK07324 294 K 294 (373)
T ss_pred c
Confidence 3
No 112
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.63 E-value=7.3e-15 Score=126.40 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-cccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GF-GRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~-gr~G~~~~~~~~~~~ 116 (195)
+++|++.+++... +.++++|++++++++.|...+ +++|.++|++||++||+||+|+ |+ +..|. . .....++
T Consensus 158 ~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~l~~la~~~~~~li~De~~~~g~~~~~~~-~-~~~~~~~ 231 (397)
T PRK06939 158 MADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPEICDLADKYDALVMVDDSHAVGFVGENGR-G-TVEHFGV 231 (397)
T ss_pred HHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC-C-HHHHcCC
Confidence 5677777764321 126789999999999998555 9999999999999999999996 32 22332 1 2233344
Q ss_pred --Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHH
Q psy13322 117 --SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQII 189 (195)
Q Consensus 117 --~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~ 189 (195)
.+|++ ++||+++ |+++||+++++++++.+...... .+.+.++..+++++++++.++. ++++++++++++++.
T Consensus 232 ~~~~~i~~~S~sK~~~-g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~ 310 (397)
T PRK06939 232 MDRVDIITGTLGKALG-GASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFR 310 (397)
T ss_pred CCCCcEEEEECHHHhC-ccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34666 7789996 45899999999998888654322 2223456667888888887754 577889999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 311 ~~L~~ 315 (397)
T PRK06939 311 EGMTA 315 (397)
T ss_pred HHHHH
Confidence 98875
No 113
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.63 E-value=5.1e-15 Score=127.08 Aligned_cols=149 Identities=22% Similarity=0.225 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc-CCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH-GVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~-~~~ 117 (195)
++.|++.+. .++++|++....+.+|.+ ++.+.+++|.++|++||+++|+||+|.++.+. +....++... ...
T Consensus 148 ~~~l~~~~~-----~~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 221 (382)
T PRK06108 148 LDRLLAAIT-----PRTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPD 221 (382)
T ss_pred HHHHHHhcC-----ccceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCc
Confidence 566766654 245677777777888865 68899999999999999999999999987553 2211111111 112
Q ss_pred cc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322 118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~ 191 (195)
+. +.+|||.++ +|+|+||+++++++++.+.......+.+.+++++.++.++|+...+ ++++++++++++++.+.
T Consensus 222 ~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 301 (382)
T PRK06108 222 DRIIFVNSFSKNWAMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDA 301 (382)
T ss_pred CCEEEEeechhhccCcccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 22 337899998 8999999999999988876654444566788999999999975432 56778889999999888
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 302 L~~ 304 (382)
T PRK06108 302 LRA 304 (382)
T ss_pred HHh
Confidence 864
No 114
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.62 E-value=6.7e-15 Score=126.99 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++.++. ++.+|++....+.+|. +++.+.+++|.++|++||++||.||+|.++.+.+. +...... +..+
T Consensus 152 ~~~l~~~~~~-----~~~~v~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 224 (384)
T PRK06348 152 VKKLEALITS-----KTKAIILNSPNNPTGA-VFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYED-FVPMATLAGMPE 224 (384)
T ss_pred HHHHHHhhCc-----CccEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEecccccceeCCC-ccchhhcCCCcC
Confidence 5777776652 3445666666778885 55788999999999999999999999998855432 2222111 2223
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
. +.+|||+++ .|+|+||+++++++++.+.......+++.+++++.++..+|+..++ +++++.++++.+++.+.|
T Consensus 225 ~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L 304 (384)
T PRK06348 225 RTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRI 304 (384)
T ss_pred cEEEEecchhccCCccccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 337799999 8999999999999988887655555677889999999888875432 456777888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 305 ~~ 306 (384)
T PRK06348 305 ES 306 (384)
T ss_pred hc
Confidence 64
No 115
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.62 E-value=1.2e-14 Score=124.29 Aligned_cols=132 Identities=11% Similarity=0.098 Sum_probs=99.4
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--cccCCCcccccccCCCcc--hhhhccccCCC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHGVSPD--IVTMAKGIANG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~G~~~~~~~~~~~~pd--i~~~sK~l~~G 130 (195)
+..+|++++ .+|+|++. +.+.|++|.++|++||+++|+||+|..+ +..|. . ....++ +| +.++||++ +|
T Consensus 136 ~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~-~-~~~~~~--~divv~s~SKal-aG 208 (346)
T TIGR03576 136 GTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQ-P-PALDLG--ADLVVTSTDKLM-DG 208 (346)
T ss_pred CceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCccccccccCCC-C-CHHHcC--CcEEEeccchhc-cc
Confidence 345677776 58999865 4677999999999999999999999832 11232 1 122233 34 44778966 46
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++|++++++++++.+.+....+.++.+|+++++++++|+....+.+++.++++.+++.+.|+
T Consensus 209 ~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~~~~l~~r~~~~~~~l~ 271 (346)
T TIGR03576 209 PRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFD 271 (346)
T ss_pred cceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988765555557888999999999876556678889999888887765
No 116
>PRK07777 aminotransferase; Validated
Probab=99.61 E-value=9.9e-15 Score=125.94 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
+++|++.+. .++.+|++.+..+.+|... +.+.+++|.++|++|++++|+||+|.++.+.+..+.++..+ +...
T Consensus 149 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (387)
T PRK07777 149 LDALRAAVT-----PRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRE 222 (387)
T ss_pred HHHHHHhcC-----cccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcC
Confidence 567777654 2456788888888889744 78899999999999999999999999876545322233222 2222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+ +.+|||.++ .|+++||+++++++++.+.......++..+++.+.++..+++..+. +.+++.++++++++.+.|
T Consensus 223 ~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 302 (387)
T PRK07777 223 RTVTISSAAKTFNVTGWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGL 302 (387)
T ss_pred cEEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347799999 8999999999999888887655444555555566666666654322 456788999999999988
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 303 ~~ 304 (387)
T PRK07777 303 AE 304 (387)
T ss_pred Hh
Confidence 65
No 117
>PLN02368 alanine transaminase
Probab=99.60 E-value=2.1e-14 Score=125.22 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Cccccccc--C
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGFEMH--G 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~--~ 115 (195)
++.|++.++....+ .+++++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|. .+.+.... +
T Consensus 194 ~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~-v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~ 272 (407)
T PLN02368 194 VNNLRQSVAQARSKGITVRAMVIINPGNPTGQ-CLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMD 272 (407)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhh
Confidence 57788877642111 15666666555788995 66889999999999999999999999998866552 12232111 1
Q ss_pred C------Ccchh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---------
Q psy13322 116 V------SPDIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--------- 172 (195)
Q Consensus 116 ~------~pdi~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--------- 172 (195)
+ .+.++ +|||++ + .|||+||+++ ++++++.+.... ..+++.|.+++.++.++|+.-
T Consensus 273 ~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~~~~~~~~~Q~aa~~~l~~~~~~~~~~~~ 351 (407)
T PLN02368 273 MGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SIALSPNVSGQIFMGLMVNPPKPGDISYDQ 351 (407)
T ss_pred hcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cccCCCCcHHHHHHHHHhCCCCCCCccHHH
Confidence 1 12333 669999 6 8999999994 888888877653 345677889999999998631
Q ss_pred --cc-hhHHHHHHHHHHHHHHHhhcC
Q psy13322 173 --KD-EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 173 --~~-~~~~~~l~~~~~~l~~~L~~l 195 (195)
++ .++.+.++++++.+.+.|+++
T Consensus 352 ~~~~~~~~~~~~~~rr~~~~~~L~~~ 377 (407)
T PLN02368 352 FVRESKGILESLRRRARMMTDGFNSC 377 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 11 346788999999999999863
No 118
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.59 E-value=2e-14 Score=122.45 Aligned_cols=152 Identities=16% Similarity=0.117 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCC
Q psy13322 40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~ 117 (195)
+++|++.+++...++ +..+|++....+++|. .++.+.+++|.++|++||+++|+||+|.++......+.. .....-.
T Consensus 132 ~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~-~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~ 210 (363)
T PF00155_consen 132 PEALEEALDELPSKGPRPKAVLICNPNNPTGS-VLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDED 210 (363)
T ss_dssp HHHHHHHHHTSHTTTETEEEEEEESSBTTTTB-B--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTT
T ss_pred ccccccccccccccccccceeeeccccccccc-ccccccccchhhhhcccccceeeeeceeccccCCCccCccccccccc
Confidence 688999988754333 4678889889999996 567888999999999999999999999987543221111 1212223
Q ss_pred cch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc----c-hhHHHHHHHHHHHH
Q psy13322 118 PDI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK----D-EELQYNCKQVSAQI 188 (195)
Q Consensus 118 pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~----~-~~~~~~l~~~~~~l 188 (195)
+++ -++||++| .|+|+|++++++++++.+......... +++.+.++.+++.... . ++++++++++.+++
T Consensus 211 ~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 288 (363)
T PF00155_consen 211 DNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLL 288 (363)
T ss_dssp STEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeeccccccccccccccccchhhhhhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHH
Confidence 332 26689999 899999999999999988765433333 6666666666665432 1 56788899999999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
.+.|++
T Consensus 289 ~~~L~~ 294 (363)
T PF00155_consen 289 REALEE 294 (363)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 119
>PRK09082 methionine aminotransferase; Validated
Probab=99.59 E-value=8.5e-15 Score=126.44 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p 118 (195)
++++++.+. .++.+|++....+.+|.. ++.+.+++|.++|++||+++|+||+|..+.+.+..+.++.. .+..+
T Consensus 153 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~-~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~ 226 (386)
T PRK09082 153 WQRFAAAIS-----PRTRLIILNTPHNPSGTV-WSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRE 226 (386)
T ss_pred HHHHHHhcC-----ccceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccC
Confidence 566776664 255677777778888964 46788999999999999999999999877554432222222 23333
Q ss_pred ch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 DI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 di---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
.+ -+|||++| .|+|+||+++++++++.+........++.+++++.++.+.++..++ +++++.++++++++.+.|
T Consensus 227 ~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 306 (386)
T PRK09082 227 RAFVVSSFGKTYHVTGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAAL 306 (386)
T ss_pred cEEEEeechhhccchhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33 37799998 8999999999999998887765445667788888887777763221 456777889999999888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 307 ~~ 308 (386)
T PRK09082 307 AN 308 (386)
T ss_pred Hh
Confidence 64
No 120
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.59 E-value=3.2e-14 Score=119.46 Aligned_cols=139 Identities=19% Similarity=0.204 Sum_probs=109.0
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc----ccccCCCcchhhhccccC-
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG----FEMHGVSPDIVTMAKGIA- 128 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~----~~~~~~~pdi~~~sK~l~- 128 (195)
+++++|++++..+++|. ..+.+.+++|+++|+++|+++|+||+|++++..+. ... ....+....+.+++|.++
T Consensus 131 ~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~K~~~~ 208 (350)
T cd00609 131 PKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE-PPPALALLDAYERVIVLRSFSKTFGL 208 (350)
T ss_pred ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc-ccccccCcCccCcEEEEeecccccCC
Confidence 47889999998888997 45678899999999999999999999998776554 221 111122222346789999
Q ss_pred CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHhhc
Q psy13322 129 NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 129 ~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+++|++++++ ++.+.+.......+++.++.++.++.++|+.. ..+.+.++++++.+++.+.|++
T Consensus 209 ~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 277 (350)
T cd00609 209 PGLRIGYLIAPPEELLERLKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLEALKE 277 (350)
T ss_pred cccceEEEecCHHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999 78888877666666778889999999998876 2356778899999999998875
No 121
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.58 E-value=3.7e-14 Score=123.42 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=106.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP- 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p- 118 (195)
++.|++.+.+ ++.+|++....+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|..+.++..+...+
T Consensus 168 ~~~l~~~~~~-----~~k~v~l~~P~NPTG~-~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~ 241 (405)
T PRK06207 168 LDQLEEAFKA-----GVRVFLFSNPNNPAGV-VYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPE 241 (405)
T ss_pred HHHHHHhhhh-----cCeEEEECCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcC
Confidence 5777777653 3445666666788885 55788899999999999999999999998866564222222222222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L 192 (195)
. +-+|||+++ .|+|+||+++++++++.+.........+.+.+++.++.++|+... -++..+.++++++.+.+.|
T Consensus 242 ~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L 321 (405)
T PRK06207 242 NVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVL 321 (405)
T ss_pred cEEEEecchhhccCcccceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 337799999 999999999999998888765444445566788888888886421 1345566777778888777
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 322 ~~ 323 (405)
T PRK06207 322 RG 323 (405)
T ss_pred hc
Confidence 64
No 122
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.58 E-value=3.6e-14 Score=123.04 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.+++.+. +++++|++....+.+|. +++.+.+++|.++|++||++||+||+|..+-+.+....++... +...
T Consensus 156 ~~~l~~~~~-----~~~k~v~l~~P~NPTG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T PRK07681 156 LELIPEEIA-----DKAKMMILNFPGNPVPA-MAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKE 229 (399)
T ss_pred HHHHHHhcc-----ccceEEEEeCCCCCcCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcc
Confidence 456665553 24566777655778895 5678899999999999999999999999875544312122111 1111
Q ss_pred ---chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 ---DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 ---di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
.+-+|||.++ .|+|+||+++++++++.+........++.+.+++.++.++|+...+ ++.++.++++++.+.+.|
T Consensus 230 ~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 309 (399)
T PRK07681 230 VGVEINSLSKSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGF 309 (399)
T ss_pred cEEEEeecccccCCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2347799998 9999999999999998887654445566778888888888865322 455677888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 310 ~~ 311 (399)
T PRK07681 310 RT 311 (399)
T ss_pred HH
Confidence 64
No 123
>PRK12414 putative aminotransferase; Provisional
Probab=99.58 E-value=3e-14 Score=123.05 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=109.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++.++ .++++|++....+.+|. +++++.+++|.++|++||+++|+||+|..+.+.|....++... +...
T Consensus 152 ~~~l~~~l~-----~~~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 225 (384)
T PRK12414 152 WDEVAAAIT-----PRTRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAE 225 (384)
T ss_pred HHHHHhhcC-----cccEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccC
Confidence 466766664 25667777777888896 4568889999999999999999999999875555312122111 2222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~ 193 (195)
. +-+|||.++ .|+|+||+++++++++.+.......+++.+.+++.++.++|+.-. ..++++.++++++.+.+.|+
T Consensus 226 ~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 305 (384)
T PRK12414 226 RSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEPASYLGLGAFYQRKRDLLARELA 305 (384)
T ss_pred cEEEEecccccccCccceEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3 337799998 899999999999998888776544567778888888888886422 13467788899999988886
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 306 ~ 306 (384)
T PRK12414 306 G 306 (384)
T ss_pred h
Confidence 4
No 124
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.57 E-value=3.1e-14 Score=123.23 Aligned_cols=149 Identities=16% Similarity=0.141 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-C---
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G--- 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~--- 115 (195)
+++|++.+. .++.+|++...++.+|. +++.+.+++|.++|++||+++|+||+|..+.+.+....+.... +
T Consensus 160 ~~~l~~~~~-----~~~k~i~l~~P~NPtG~-~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~ 233 (394)
T PRK05942 160 LSSIPEEVA-----QQAKILYFNYPSNPTTA-TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKD 233 (394)
T ss_pred HHHHHHhcc-----ccceEEEEcCCCCCCCC-cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccc
Confidence 566766654 25567777656888895 5678889999999999999999999998775544322222111 1
Q ss_pred CCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 116 VSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 116 ~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
....+-+|||.++ .|+++||+++++++++.+........++.+++++.++.++|+..++ ++.+++++++.+++.+.|
T Consensus 234 ~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 313 (394)
T PRK05942 234 IGVEFHTLSKTYNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGL 313 (394)
T ss_pred cEEEEecchhccCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223457899998 8999999999999998887654434556677888888888875432 467788888899998888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 314 ~~ 315 (394)
T PRK05942 314 GE 315 (394)
T ss_pred HH
Confidence 64
No 125
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.57 E-value=5.2e-14 Score=121.80 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.|++.+++.. +++++|++....+.+|. .++.+.+++|.++|++||+++|+||+|..+.+.|..+.+..... ...
T Consensus 153 ~~~l~~~~~~~~--~~~~~i~l~~P~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~ 228 (391)
T PRK07309 153 PEMLEKAILEQG--DKLKAVILNYPANPTGV-TYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQ 228 (391)
T ss_pred HHHHHHHhhccC--CCeEEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCC
Confidence 577888876542 35777877755778885 55678899999999999999999999998865553222222111 112
Q ss_pred ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHhh
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L~ 193 (195)
+-+|||.+| .|+++||+++++++++.+.......+.+.+++++.++.++|+... ...++++++++++++.+.|+
T Consensus 229 ~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (391)
T PRK07309 229 TILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMT 308 (391)
T ss_pred EEEEecChhhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 337799998 899999999999998888754333445667888888888887532 24556788888888988886
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 309 ~ 309 (391)
T PRK07309 309 D 309 (391)
T ss_pred H
Confidence 4
No 126
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.57 E-value=3.6e-14 Score=122.21 Aligned_cols=149 Identities=15% Similarity=0.169 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVS- 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~- 117 (195)
++++++.+. .++++|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.+....++... +..
T Consensus 154 ~~~l~~~~~-----~~~~~v~i~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~ 227 (383)
T TIGR03540 154 FDAIPEDIA-----KKAKLMFINYPNNPTGA-VAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKD 227 (383)
T ss_pred HHHHHhhcc-----ccceEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCccc
Confidence 556666554 24556776655778885 5688999999999999999999999999775544322222111 111
Q ss_pred --cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 118 --PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 118 --pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
-.+.+|||.+| .|+|+||+++++++++.+.........+.+.+++.++.++|+...+ +++++.++++.+.+.+.|
T Consensus 228 ~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 307 (383)
T TIGR03540 228 VGIEFHSLSKTYNMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEAL 307 (383)
T ss_pred CEEEEEecccccCCccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22448899998 8999999999999988876543333344566778888888865322 456778889999998888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 308 ~~ 309 (383)
T TIGR03540 308 KK 309 (383)
T ss_pred Hh
Confidence 75
No 127
>PRK08068 transaminase; Reviewed
Probab=99.57 E-value=4.4e-14 Score=122.08 Aligned_cols=149 Identities=14% Similarity=0.110 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p 118 (195)
++++++.+. .++++|++-...+.+|. .++.+.+++|.++|++||+++|+||+|..+.+.+....++ ...+..+
T Consensus 157 ~~~l~~~~~-----~~~~~v~l~~P~NPTG~-~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~ 230 (389)
T PRK08068 157 YTKIPEEVA-----EKAKLMYLNYPNNPTGA-VATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKD 230 (389)
T ss_pred HHHHHHhcc-----ccceEEEEECCCCCCCC-cCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccC
Confidence 456666553 24456666544678885 6678899999999999999999999998876655212122 2122222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
. +-+|||++| .|+|+||+++++++++.+.........+.++..+.++.+++....+ +.+++.++++++++.+.|
T Consensus 231 ~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L 310 (389)
T PRK08068 231 VGIELYTLSKTFNMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISAC 310 (389)
T ss_pred CEEEEecchhccCCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 347899998 8999999999999998887654333344455566666676643222 467788899999998888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 311 ~~ 312 (389)
T PRK08068 311 RE 312 (389)
T ss_pred HH
Confidence 64
No 128
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.57 E-value=4.9e-14 Score=122.97 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCC-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVS- 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~- 117 (195)
++.+++.+. .++++|++....+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+. ..++... +..
T Consensus 169 ~~~l~~~~~-----~~~k~i~l~nP~NPTG~-v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~-~~s~~~~~~~~~ 241 (410)
T PRK06290 169 LDSIPKDIK-----EKAKLLYLNYPNNPTGA-VATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK-PLSFLSVPGAKE 241 (410)
T ss_pred HHHHHHhhc-----ccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCC-CcChhcCCCccc
Confidence 566666554 24567777755788995 55788999999999999999999999998754443 2222111 111
Q ss_pred --cchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322 118 --PDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 118 --pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~ 193 (195)
.-+-+|||+++ .|+|+||+++++++++.+.......+.+.+.+++.++.++|+..+ .+++++.++++++++.+.|+
T Consensus 242 ~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 321 (410)
T PRK06290 242 VGVEIHSLSKAYNMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKLVKILN 321 (410)
T ss_pred cEEEEeechhhcCCchhheEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 11347799998 899999999999999888765444445555678888888886432 24577888899999998886
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 322 ~ 322 (410)
T PRK06290 322 E 322 (410)
T ss_pred h
Confidence 5
No 129
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.56 E-value=4.5e-14 Score=121.71 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC--
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV-- 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~-- 116 (195)
++.+++.+. .++.+|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.|....++... +.
T Consensus 156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (385)
T PRK09276 156 LDAIPEDVA-----KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKD 229 (385)
T ss_pred HHHHHHhcc-----ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcC
Confidence 455555443 24566777766788896 5678889999999999999999999999875544312122111 11
Q ss_pred -CcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 117 -SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 117 -~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
.-.+.+|||.+| .|+|+||+++++++++.+.........+.+++.+.++.++|+..+. +++++.++++++++.+.|
T Consensus 230 ~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 309 (385)
T PRK09276 230 VGIEFHSLSKTYNMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGL 309 (385)
T ss_pred CEEEEecchhhcCCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 223458899998 8999999999999988887654333344566777888888764322 456777888889998888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 310 ~~ 311 (385)
T PRK09276 310 RK 311 (385)
T ss_pred Hh
Confidence 65
No 130
>PRK08175 aminotransferase; Validated
Probab=99.56 E-value=7.1e-14 Score=121.06 Aligned_cols=152 Identities=15% Similarity=0.162 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.++|+++++... .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+-+.|....++....-..+
T Consensus 151 ~~~l~~~l~~~~--~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~ 227 (395)
T PRK08175 151 FNELERAIRESY--PKPKMMILGFPSNPTAQ-CVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKD 227 (395)
T ss_pred HHHHHHHHhhcc--CCceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCccc
Confidence 577888777543 35677887766778884 667888999999999999999999999877554431112211111123
Q ss_pred ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+.+|||.+| .|+++||+++++++++.+.+......++.++.++.++.++|+..+. +.+++.++++.+++.+.|
T Consensus 228 ~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L 307 (395)
T PRK08175 228 VAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGL 307 (395)
T ss_pred CEEEEeeccccccCcchhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 347799998 8999999999999998887654333455566677877888864322 456777888888898888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 308 ~~ 309 (395)
T PRK08175 308 HE 309 (395)
T ss_pred HH
Confidence 64
No 131
>PRK08960 hypothetical protein; Provisional
Probab=99.56 E-value=7.1e-14 Score=120.70 Aligned_cols=146 Identities=15% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+.+ +...+++-...+.+|. .++.+.+++|.++|++||+++|+||+|.++.+.+. .... ..+.++
T Consensus 155 ~~~l~~~~~~-----~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~~~--~~~~~~ 225 (387)
T PRK08960 155 PALVERHWNA-----DTVGALVASPANPTGT-LLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AASV--LEVDDD 225 (387)
T ss_pred HHHHHHHhCc-----cceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCCh--hhccCC
Confidence 5667666552 2334444444678886 45678899999999999999999999998754332 2122 234456
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHHh
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~~L 192 (195)
++ +|||.+| .|+|+||+++++++++.+.......+.+.+.+++.++.++|+. ..+ ..+++.++++++.+.+.|
T Consensus 226 vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L 305 (387)
T PRK08960 226 AFVLNSFSKYFGMTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPAL 305 (387)
T ss_pred EEEEeecccccCCcccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 5799998 8999999999999988887654445566788898888888853 211 455677888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 306 ~~ 307 (387)
T PRK08960 306 RE 307 (387)
T ss_pred Hh
Confidence 64
No 132
>PRK09148 aminotransferase; Validated
Probab=99.56 E-value=5.4e-14 Score=122.34 Aligned_cols=152 Identities=17% Similarity=0.183 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.++.+. .+..+|++....+.+|. .++.+.+++|.++|++||++||+||+|..+.+.+....+.....-.++
T Consensus 152 ~~~l~~~~~~~~--~~~~~v~l~~P~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~ 228 (405)
T PRK09148 152 FPALERAVRHSI--PKPIALIVNYPSNPTAY-VADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKD 228 (405)
T ss_pred ccCHHHHHhhcc--ccceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccC
Confidence 456666666543 25567777766788895 557888999999999999999999999987554431112221211122
Q ss_pred ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+-+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.++|+..++ +.+++.++++++++.+.|
T Consensus 229 ~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L 308 (405)
T PRK09148 229 VTVEFTSMSKTFSMAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESF 308 (405)
T ss_pred cEEEEeccccccCCcchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999 9999999999999998887654444566678888888888863222 456778889999998888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 309 ~~ 310 (405)
T PRK09148 309 GR 310 (405)
T ss_pred HH
Confidence 64
No 133
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.55 E-value=1.1e-13 Score=120.30 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+++.. .++.++++...++.+|. +++.+.+++|.++|++|+++||.||+|..+-+.+....+.....-.++
T Consensus 162 ~~~l~~~~~~~~--~~~~~i~~~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~ 238 (403)
T PRK08636 162 FENLEKALRESS--PKPKYVVVNFPHNPTTA-TVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKD 238 (403)
T ss_pred hhHHHHHHhhcc--CCceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccc
Confidence 446677776543 35677777766788885 667888999999999999999999999987554431222222211223
Q ss_pred ----hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 120 ----IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 ----i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+.+|||.+| .|+|+||+++++++++.+.+......++.+++++.++..+++...+ +++++.++++.+.+.+.|
T Consensus 239 ~~i~~~S~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 318 (403)
T PRK08636 239 VAVESYTLSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDGDQSCVEEIRETYRKRRDVLIESF 318 (403)
T ss_pred cEEEEEecccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 235799997 8999999999999988877654333445556666666666653221 356677788888888887
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 319 ~~ 320 (403)
T PRK08636 319 AN 320 (403)
T ss_pred HH
Confidence 64
No 134
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.55 E-value=9.4e-14 Score=120.12 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++.+. +++++|++-..++.+|. ..+.+.+++|.++|++||+++|+||+|..+.+.+....+.... +..+
T Consensus 150 ~~~l~~~i~-----~~~klv~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 223 (389)
T PRK05957 150 PEAIEQAIT-----PKTRAIVTISPNNPTGV-VYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGN 223 (389)
T ss_pred HHHHHHhcC-----cCceEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccC
Confidence 567777664 24556677667888886 4567789999999999999999999999885543212122111 2222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~~~~~~~l~~~~~~l~~~L 192 (195)
. +-+|||.+| .|+|+||+++++++++.+.........+.+.+++.++..+|+.-. -++..+.++++++++.+.|
T Consensus 224 ~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L 303 (389)
T PRK05957 224 HTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSL 303 (389)
T ss_pred cEEEEecchhhccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2 447899998 899999999999999988765443444556788888888886422 1455677888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 304 ~~ 305 (389)
T PRK05957 304 GQ 305 (389)
T ss_pred Hh
Confidence 64
No 135
>PRK08912 hypothetical protein; Provisional
Probab=99.55 E-value=8.3e-14 Score=120.20 Aligned_cols=149 Identities=23% Similarity=0.247 Sum_probs=106.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p 118 (195)
++.|++.+. .++++|++....+.+|. +++.+.+++|.++|++|++++|+||+|..+.+.+..+.+... .+..+
T Consensus 149 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 222 (387)
T PRK08912 149 RAALAAAFS-----PRTKAVLLNNPLNPAGK-VFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRE 222 (387)
T ss_pred HHHHHHHhC-----ccceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccC
Confidence 466776664 24456666666788885 556788999999999999999999999877554421212211 12222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
. +-++||.++ .|+|+||+++++++++.+.......+++.++..+.++.++|...++ ++++++++++++++.+.|
T Consensus 223 ~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 302 (387)
T PRK08912 223 RTVKIGSAGKIFSLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGL 302 (387)
T ss_pred ceEEEeechhhccCcCceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 236789999 9999999999999988886654444566677777777777753222 467788999999999888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
+.
T Consensus 303 ~~ 304 (387)
T PRK08912 303 RR 304 (387)
T ss_pred Hh
Confidence 75
No 136
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=119.30 Aligned_cols=149 Identities=18% Similarity=0.221 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--CCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--GVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~~~ 117 (195)
++.+++.+. .++++|++....+.+|. +++.+.+++|.++|++||+++|+||+|..+.+.|..+.+.... +..
T Consensus 154 ~~~l~~~l~-----~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 227 (393)
T PRK05764 154 VEQLEAAIT-----PKTKALILNSPSNPTGA-VYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELR 227 (393)
T ss_pred HHHHHHhhC-----ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCc
Confidence 466777664 24456666666677885 4567889999999999999999999999775544322222211 222
Q ss_pred cc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322 118 PD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 118 pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~ 191 (195)
+. +.+|||.++ .|+++||+++++++++.+.......+.+.+++++.++.++|+...+ +++++.++++.+.+++.
T Consensus 228 ~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 307 (393)
T PRK05764 228 DRTITVNGFSKAYAMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDG 307 (393)
T ss_pred CCEEEEecCcccccCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 22 336899999 8999999999999988886654444556788999888888863221 45677788888888888
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 308 L~~ 310 (393)
T PRK05764 308 LNE 310 (393)
T ss_pred Hhh
Confidence 864
No 137
>KOG1357|consensus
Probab=99.54 E-value=7.1e-14 Score=119.97 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHhc----CCC----CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCC
Q psy13322 37 NKFYEQLVNAFQYN----VPI----TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGD 106 (195)
Q Consensus 37 ~~~~~~l~~~l~~~----~~~----~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~ 106 (195)
++++++||++|.+. .|+ .+...||+|.++||.|.++. |+++.++++||.++|++||+|+. .|++|.
T Consensus 250 HNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~----Lp~vvalkkkykayl~lDEAHSiGA~g~tGr 325 (519)
T KOG1357|consen 250 HNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD----LPEVVALKKKYKAYLYLDEAHSIGAMGATGR 325 (519)
T ss_pred cCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc----cHHHHHhhccccEEEEeeccccccccCCCCc
Confidence 34478888888763 121 24568999999999999999 89999999999999999999983 345554
Q ss_pred CcccccccCCCc---ch--hhhccccCCCCceEEEEecHHHHHHhhccccccCC--CchHHHHHHHHHHHHhhcc-----
Q psy13322 107 NYWGFEMHGVSP---DI--VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--GGNPVGCVIASTVLDVIKD----- 174 (195)
Q Consensus 107 ~~~~~~~~~~~p---di--~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--~~~p~~~~aa~aal~~~~~----- 174 (195)
+ ..+.+++.| || .||.|+++++ .|++.++++++++++......++ ..+|..+...+.+++.+.-
T Consensus 326 g--vce~~g~d~~dvDImMGtftKSfga~--GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~ 401 (519)
T KOG1357|consen 326 G--VCEYFGVDPEDVDIMMGTFTKSFGAA--GGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTN 401 (519)
T ss_pred c--eeeccCCCchhheeecceehhhcccc--cceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCccc
Confidence 1 346667755 32 3778999832 37999999999999876543333 3456666667778887631
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+..+++.+|..+++..|++
T Consensus 402 ~g~~k~~~l~~ns~yfr~~l~~ 423 (519)
T KOG1357|consen 402 RGRQKIERLAENSRYFRWELQK 423 (519)
T ss_pred HHHHHHHHHHhhhHHHHHhhhc
Confidence 35668899999999988875
No 138
>PRK07550 hypothetical protein; Provisional
Probab=99.53 E-value=1.5e-13 Score=118.55 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=105.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p 118 (195)
.++|++.+++ ++.+|++....+.+|. .++.+.+++|.++|++||+++|+||+|.+|...+...... ...+...
T Consensus 153 ~~~l~~~~~~-----~~~~v~~~~P~NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~ 226 (386)
T PRK07550 153 PAAAEALITP-----RTRAIALVTPNNPTGV-VYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDD 226 (386)
T ss_pred HHHHHHHhcc-----cCcEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccc
Confidence 5677777753 3345455454567886 4568889999999999999999999999874322111111 1111122
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+ +.+|||.++ .|+++|++++++++++.+.......+.+.+.+++.++..+++.+++ ++.++.++++++++.+.|
T Consensus 227 ~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 306 (386)
T PRK07550 227 TLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVF 306 (386)
T ss_pred cEEEEecchhhccCcccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 447899999 8999999999999888877655555566788888888888875432 456778888898888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
+.
T Consensus 307 ~~ 308 (386)
T PRK07550 307 AR 308 (386)
T ss_pred Hh
Confidence 64
No 139
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.52 E-value=1.5e-13 Score=118.58 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=97.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccccccCCC-cc---hhhhccccC-
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMHGVS-PD---IVTMAKGIA- 128 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~~~~-pd---i~~~sK~l~- 128 (195)
+..+|++-+..+.+|. +++.+.+++|.++|++||++||+||+|..|.+.+.. ..++....-. +. +-+|||++|
T Consensus 165 ~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~ 243 (388)
T PRK07366 165 QARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNM 243 (388)
T ss_pred cceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCC
Confidence 4556777777888996 667889999999999999999999999988654431 1112111111 12 237899998
Q ss_pred CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322 129 NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 129 ~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~ 194 (195)
.|+|+||+++++++++.+........++..+..+.+++++|...++ +++++.++++++++.+.|++
T Consensus 244 ~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~ 311 (388)
T PRK07366 244 GGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQ 311 (388)
T ss_pred cchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988887654333333334444555666643221 46678888999999888864
No 140
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.51 E-value=3.7e-13 Score=113.79 Aligned_cols=148 Identities=20% Similarity=0.226 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---C
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG---V 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~---~ 116 (195)
.+++++++.+.....+.++|+++++++.+|...+ +++|.++|++||+++|+||+|+ +|..+.......... .
T Consensus 117 ~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~-~g~~~~~~~~~~~~~~~~~ 191 (349)
T cd06454 117 MEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS-VGVYGPHGRGVEEFGGLTD 191 (349)
T ss_pred HHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc-ccccCCCCCChhhhccccc
Confidence 4567777765321136789999999999998765 8999999999999999999996 443332111111111 2
Q ss_pred Ccchh--hhccccCCCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q psy13322 117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~ 191 (195)
..|++ +++|.++. +.|++++++++++.+.... +..+.+.++..++++.++|+.+.+ ++..++++++++++.+.
T Consensus 192 ~~~i~~~s~sK~~~~--~gG~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 269 (349)
T cd06454 192 DVDIIMGTLGKAFGA--VGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRG 269 (349)
T ss_pred cCcEEEeechhhhcc--cCCEEECCHHHHHHHHHhchhhhccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 34554 56899983 3478888888887776543 223345678888899999988755 67789999999999998
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 270 l~~ 272 (349)
T cd06454 270 LKE 272 (349)
T ss_pred HHh
Confidence 864
No 141
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.51 E-value=3.6e-13 Score=116.35 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=105.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++.+. .++.+|++....+.+|. .++.+.+++|.++|+++|+++|+||++.+|.+.+....+...+ +..+
T Consensus 152 ~~~l~~~~~-----~~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~ 225 (397)
T PRK07568 152 KEEIEKLIT-----PKTKAILISNPGNPTGV-VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLED 225 (397)
T ss_pred HHHHHHhcC-----ccceEEEEECCCCCCCc-cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcC
Confidence 466666654 24556666555677885 6677889999999999999999999999987665422222222 2234
Q ss_pred chh---hhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHH
Q psy13322 119 DIV---TMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 119 di~---~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~ 191 (195)
+++ +|||.++ .|+++||++++ +++++.+..... .+++.+++++.++.++|+..+. +++++.++++++.+.+.
T Consensus 226 ~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 304 (397)
T PRK07568 226 RVIIIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEE 304 (397)
T ss_pred CEEEEecchhhccCCCcceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 7799999 79999999985 678776654332 2456678888888888864322 45677788899999888
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 305 L~~ 307 (397)
T PRK07568 305 LNK 307 (397)
T ss_pred Hhc
Confidence 864
No 142
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.50 E-value=3.8e-13 Score=116.50 Aligned_cols=149 Identities=12% Similarity=0.068 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Ccccc-c---cc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGF-E---MH 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~-~---~~ 114 (195)
++.|++.+. .+++++++-...+.+|. +++++.+++|.++|++|+++||+||+|..+.+.+. ...+. . ..
T Consensus 156 ~~~l~~~~~-----~~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (396)
T PRK09147 156 FDAVPAEVW-----ARTQLLFVCSPGNPTGA-VLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL 229 (396)
T ss_pred HHHHHHHHh-----hccEEEEEcCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc
Confidence 566666554 24556666666788896 66889999999999999999999999998755442 11111 1 11
Q ss_pred CC--Ccc---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q psy13322 115 GV--SPD---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQ 187 (195)
Q Consensus 115 ~~--~pd---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~ 187 (195)
+. .+. +-+|||.++ .|+|+||+++++++++.+.......+++.+++++.++.+++..-+ -.+.++.++++++.
T Consensus 230 ~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~ 309 (396)
T PRK09147 230 GRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWNDEAHVRENRALYREKFDA 309 (396)
T ss_pred CccccccEEEEeccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 11 123 337799987 899999999999998887654433455677888888888774211 13456777888888
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
+.+.|++
T Consensus 310 ~~~~L~~ 316 (396)
T PRK09147 310 VTPILAP 316 (396)
T ss_pred HHHHHHH
Confidence 8777754
No 143
>PRK07683 aminotransferase A; Validated
Probab=99.50 E-value=4.4e-13 Score=115.90 Aligned_cols=148 Identities=17% Similarity=0.205 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
.+.+++.+. .++++|++....+.+|. .++.+.+++|.++|+++|+++|+||+|..+.+.+. ..+...+ +...
T Consensus 151 ~~~l~~~~~-----~~~~~i~i~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 223 (387)
T PRK07683 151 AEALENAIT-----EKTRCVVLPYPSNPTGV-TLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQP-HTSIAHFPEMRE 223 (387)
T ss_pred HHHHHHhcC-----cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCeEEEEecccccceeCCC-cCChhhccCCcC
Confidence 355666554 24456777767778886 55788899999999999999999999998754433 2222222 2222
Q ss_pred c---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 D---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 d---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
. +.+|||.++ .|+|+||+++++++++.+.........+.+++++.++.+.|+.... +.++++++++.+.+.+.|
T Consensus 224 ~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 303 (387)
T PRK07683 224 KTIVINGLSKSHSMTGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRL 303 (387)
T ss_pred CeEEEeeccccccCccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence 2 337799999 9999999999999888877543323344567888888888864322 456777888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 304 ~~ 305 (387)
T PRK07683 304 IS 305 (387)
T ss_pred HH
Confidence 64
No 144
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.50 E-value=1.8e-13 Score=118.33 Aligned_cols=149 Identities=12% Similarity=0.160 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+.. ++++|++....+.+|. ..+.+.+++|.++|+++++++|+||+|..+.+.+....+.........
T Consensus 156 ~~~l~~~i~~-----~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK08361 156 PDELLELITK-----RTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNT 229 (391)
T ss_pred HHHHHHhccc-----ccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCE
Confidence 5667766652 4556677766778895 557788999999999999999999999987554432222211111112
Q ss_pred --hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHh
Q psy13322 120 --IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 --i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L 192 (195)
+.++||.+| .|+++||+++++++++.+.......+++.+++.+.++..+|+.... ++.++.++++.+.+.+.|
T Consensus 230 i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 309 (391)
T PRK08361 230 ILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRL 309 (391)
T ss_pred EEEecCchhcCCcHhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 237799999 8999999999999888776543334456678888888888864321 456677888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 310 ~~ 311 (391)
T PRK08361 310 KE 311 (391)
T ss_pred Hh
Confidence 64
No 145
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.50 E-value=3.1e-13 Score=115.55 Aligned_cols=138 Identities=15% Similarity=0.090 Sum_probs=101.6
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc--cC-CCcc-h--hhhcccc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM--HG-VSPD-I--VTMAKGI 127 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~--~~-~~pd-i--~~~sK~l 127 (195)
++++|++...++.+|. ..+.+.+++|.++|++||+++|+||+|..+.+.+. ..+. .. .+ .... | -+|||.+
T Consensus 142 ~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~vi~~~S~SK~~ 219 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGR-VLSVDELRAIVAWARERGAVVASDECYLELGWEGR-PVSILDPRVCGGDHTGLLAVHSLSKRS 219 (357)
T ss_pred CccEEEEeCCCCCcCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCC-CccceecccCCCccccEEEEecccccc
Confidence 6778888888889996 55678899999999999999999999988766543 2111 10 01 1112 2 2779999
Q ss_pred C-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 128 A-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 128 ~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+ .|+++||+++++++++.+........++.+++++.++.++|+.-. ....+..++++++++.+.|++
T Consensus 220 ~~~G~R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~ 288 (357)
T TIGR03539 220 NLAGYRAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGDDGHVAEQKARYAARRAQLKPALEK 288 (357)
T ss_pred CCCceeEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 899999999999988887655444456678888888888885421 144567788888888888764
No 146
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.50 E-value=3.8e-13 Score=119.53 Aligned_cols=153 Identities=18% Similarity=0.214 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC-CCcccccc--cC
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEM--HG 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G-~~~~~~~~--~~ 115 (195)
++.|++.+...... .++++|++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+.+ ..+.++.. .+
T Consensus 202 ~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~-~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~ 280 (481)
T PTZ00377 202 QEELEEAYEQAVRNGITPRALVVINPGNPTGQ-VLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLE 280 (481)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHh
Confidence 57788877643111 25665555455778895 6688999999999999999999999999876643 22222211 12
Q ss_pred CCc------chh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---------
Q psy13322 116 VSP------DIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--------- 172 (195)
Q Consensus 116 ~~p------di~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--------- 172 (195)
+.+ .++ +|||++ + +|||+||+++ ++++++.+.... ..+++.+++++.++.++|+..
T Consensus 281 l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~ 359 (481)
T PTZ00377 281 LPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLA-SINLCSNVVGQLMTGLMCNPPREGDASYPL 359 (481)
T ss_pred hcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHh-heecCCChHHHHHHHHHhCCCCCCcccHHH
Confidence 221 233 679985 6 8999999986 888888887643 334567889999999998521
Q ss_pred --cc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 173 --KD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 173 --~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+. ..+.+.++++++.+.+.|++
T Consensus 360 ~~~~~~~~~~~~~~rr~~l~~~L~~ 384 (481)
T PTZ00377 360 YKRERDAIFTSLKRRAELLTDELNK 384 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11 23334568888888888865
No 147
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.50 E-value=4.4e-13 Score=114.27 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+.+ +++++++.+..+.+|. .++.+.+++|.++|++||+++|+||+|..+...+. ..+....+. +.
T Consensus 126 ~~~l~~~~~~-----~~~~i~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~-~~ 197 (350)
T TIGR03537 126 LEKVEKSILE-----ETKIVWINYPHNPTGA-TAPRSYLKETIAMCREHGIILCSDECYTEIYFGEP-PHSALEVGI-EN 197 (350)
T ss_pred HHHHHHhhhh-----ccEEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCcEEEEeccccccccCCC-CCchhhcCc-CC
Confidence 5677776653 3456666666778885 56788899999999999999999999986533222 222221221 22
Q ss_pred h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+ .++||.++ .|+++|++++++++.+.+.......+.+.+++++.++.+++..-+ ..+.+.+++++.+.+.+.|++
T Consensus 198 ~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~r~~l~~~~~~~~~~l~~ 277 (350)
T TIGR03537 198 VLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLERRKIFKRKRDLFIEFFNK 277 (350)
T ss_pred EEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 36789997 899999999999988888765444445566677777777775321 145677788888888887764
No 148
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.50 E-value=3.1e-13 Score=116.39 Aligned_cols=146 Identities=16% Similarity=0.199 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~~p 118 (195)
++.+++.+. +++++|++....+.+|. +++.+.+++|.++|++||+++|+||++.+|.. +. ...... .....
T Consensus 147 ~~~l~~~~~-----~~~~~v~l~~p~NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~-~~~~~~~~~~~i 218 (380)
T PRK06225 147 PELVKENMD-----ENTRLIYLIDPLNPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFAR-EH-TLAAEYAPEHTV 218 (380)
T ss_pred HHHHHhhcC-----CCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHhc-cC-CchhhcCCCCEE
Confidence 466666554 24555554444667786 44778899999999999999999999987632 22 111111 01223
Q ss_pred chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+.+|||.+| .|+++|++++++++++.+.... ..+++.+.+++.++.++|+...+ +.+.+.++++.+.+.+.|++
T Consensus 219 ~~~s~SK~~g~~G~RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~ 296 (380)
T PRK06225 219 TSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE 296 (380)
T ss_pred EEeechhhcCCccceeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3668899998 8999999999999988876542 34567788888888888865322 34445566667777777754
No 149
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.50 E-value=3.3e-13 Score=115.56 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=101.8
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cc--cCCC-cc---hhhhcccc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EM--HGVS-PD---IVTMAKGI 127 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~--~~~~-pd---i~~~sK~l 127 (195)
++.+|++...++++|. +.+.+.+++|.++|++||++||.||+|..+...+. ..+. .. .+.. +. +-+|||.+
T Consensus 148 ~~~~v~~~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~ 225 (364)
T PRK07865 148 RPALIWLNSPSNPTGR-VLGVDHLRKVVAWARERGAVVASDECYLELGWDAE-PVSILDPRVCGGDHTGLLAVHSLSKQS 225 (364)
T ss_pred cceEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCC-CCccccccccCCccceEEEEeechhcc
Confidence 5678888888888996 45678899999999999999999999998765553 2121 11 0111 22 33779999
Q ss_pred C-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 128 A-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 128 ~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+ .|+++||+++++++++.+........++.+++.+.++.++|+..+ .++.++.++++.+.+.+.|++
T Consensus 226 ~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 294 (364)
T PRK07865 226 NLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGDDAHVREQRERYARRRAVLRPALEA 294 (364)
T ss_pred CCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 899999999999998888765444455667888888888876422 145667788888888888864
No 150
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.49 E-value=4.8e-13 Score=117.15 Aligned_cols=146 Identities=13% Similarity=0.056 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAE-SIQGVSGVKEFPRYFLRRAYELIKSN-NGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivE-pv~s~~G~~~~~~~~L~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++.|++.+.. +++++++- ..++.+|. .++.+.+++|.++|++| +++||.||+|..|...+. ..... ...
T Consensus 201 ~~~l~~~~~~-----~~k~i~~~p~p~NPTG~-~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~-~~~ 271 (431)
T PRK15481 201 PEKLERALAQ-----GARAVILTPRAHNPTGC-SLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPY--HSVIP-QTT 271 (431)
T ss_pred HHHHHHHHhc-----CCCEEEECCCCCCCCCc-cCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCC--CCCCc-CCC
Confidence 5778777752 34466666 46677885 55788899999999999 999999999998753331 11111 112
Q ss_pred cch---hhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c--hhHHHHHHHHHHHHHH
Q psy13322 118 PDI---VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D--EELQYNCKQVSAQIIG 190 (195)
Q Consensus 118 pdi---~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~--~~~~~~l~~~~~~l~~ 190 (195)
+.+ -+|||.++.||++||+++++++++.+.......+++.+.+++.++.++|+..+ + .++++.++++++.+.+
T Consensus 272 ~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r~~~~~ 351 (431)
T PRK15481 272 QRWALIRSVSKALGPDLRLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLAR 351 (431)
T ss_pred CCEEEEeeeccccCCCceeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 333 37799999999999999999998888654343445678899999999997532 1 3567888999999988
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 352 ~L~~ 355 (431)
T PRK15481 352 ALQQ 355 (431)
T ss_pred HHHH
Confidence 8864
No 151
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.49 E-value=3.7e-13 Score=116.90 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=108.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCccccCCCccccccc--CC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN-NGLFISDEVQTGFGRTGDNYWGFEMH--GV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~-~~llI~DEv~~g~gr~G~~~~~~~~~--~~ 116 (195)
++.|++.+. .++.+|++....+.+| ..++.+.+++|.++|++| ++++|+||+|..+.+.+..+.++... +.
T Consensus 156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~ 229 (402)
T PRK06107 156 PEALEAAIT-----PRTRWLILNAPSNPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL 229 (402)
T ss_pred HHHHHhhcC-----cCceEEEEECCCCCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCc
Confidence 466666654 2455666666677888 466788899999999998 99999999999876555312222111 22
Q ss_pred Ccchh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322 117 SPDIV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG 190 (195)
Q Consensus 117 ~pdi~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~ 190 (195)
...++ +|||.++ .|+++||+++++++++.+.......+++.+.+++.++..+|+..+. ++.++.++++.+.+.+
T Consensus 230 ~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (402)
T PRK06107 230 RDRVLVTNGVSKTYAMTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALA 309 (402)
T ss_pred cCCEEEEeccchhhcCcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 23344 5589998 8999999999999999887765555667788999999888863221 4556778888888888
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 310 ~L~~ 313 (402)
T PRK06107 310 LLNA 313 (402)
T ss_pred HHhc
Confidence 8864
No 152
>PLN02656 tyrosine transaminase
Probab=99.49 E-value=6.4e-13 Score=115.76 Aligned_cols=148 Identities=17% Similarity=0.142 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+.. ...+.++.. ..+.+|.+ ++.+.+++|.++|++||++||+||+|.+|.+.+..+.+...++-...
T Consensus 159 ~~~l~~~~~~----~~~~v~l~~-P~NPtG~~-~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 232 (409)
T PLN02656 159 LDAVEALADQ----NTVALVIIN-PGNPCGNV-YSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVP 232 (409)
T ss_pred HHHHHHHhcc----CceEEEEEC-CCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCc
Confidence 5667666642 234344444 46778864 57888999999999999999999999988665532222221221112
Q ss_pred ---hhhhccccC-CCCceEEEEec--------HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHH
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTT--------TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQV 184 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~--------~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~ 184 (195)
+-+|||.++ .|||+||++++ +++++.+..... ...+.+++++.++.++|+...+ ++.++.++++
T Consensus 233 vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 311 (409)
T PLN02656 233 VLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQTDESFFKKTINILKQS 311 (409)
T ss_pred EEEEcccchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 347799987 89999999984 467777654422 2234578899999999974211 4567788888
Q ss_pred HHHHHHHhhc
Q psy13322 185 SAQIIGYLRV 194 (195)
Q Consensus 185 ~~~l~~~L~~ 194 (195)
++.+.+.|++
T Consensus 312 r~~~~~~L~~ 321 (409)
T PLN02656 312 SDICCDRIKE 321 (409)
T ss_pred HHHHHHHHhh
Confidence 8888888865
No 153
>PLN02187 rooty/superroot1
Probab=99.47 E-value=5.9e-13 Score=117.87 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~p 118 (195)
++.|++++.. ...+.++..| .+.+|. +++.+.+++|.++|++||++||+||+|..+.+.|..+.+...+ +..+
T Consensus 194 ~~~l~~~~~~----~~~~v~i~nP-~NPTG~-v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~ 267 (462)
T PLN02187 194 LEGIEAIADE----NTVAMVVINP-NNPCGN-VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVP 267 (462)
T ss_pred HHHHHHhcCC----CcEEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCc
Confidence 5667666542 2344555555 577884 6678999999999999999999999999876655322222222 2111
Q ss_pred c--hhhhccccC-CCCceEEEEec--HHH---HHHhhcccc--ccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHH
Q psy13322 119 D--IVTMAKGIA-NGFPMGAVVTT--TEI---AQVLTKAAH--FNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVS 185 (195)
Q Consensus 119 d--i~~~sK~l~-~G~~~g~v~~~--~~i---~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~ 185 (195)
- +-+|||.++ .|||+||++++ +.+ ++.+..... ..+.+.+.+++.++.++|+.. .+ +++++.+++++
T Consensus 268 vi~l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r 347 (462)
T PLN02187 268 VLTLAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNV 347 (462)
T ss_pred EEEEecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 1 237799988 89999999984 222 233333222 222345788999999998642 11 45677888899
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
+++.+.|++
T Consensus 348 ~~l~~~L~~ 356 (462)
T PLN02187 348 DLVCDRLKD 356 (462)
T ss_pred HHHHHHHhh
Confidence 999888875
No 154
>PRK06855 aminotransferase; Validated
Probab=99.47 E-value=1.1e-12 Score=115.08 Aligned_cols=150 Identities=14% Similarity=0.192 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc--C-C
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--G-V 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~--~-~ 116 (195)
+++|++.+.+. .+++++++-..++.+|. +++.+.+++|.++|++||++||.||+|..+.+.+..+.++... + .
T Consensus 159 ~~~l~~~~~~~---~~~~~i~l~~P~NPTG~-~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~ 234 (433)
T PRK06855 159 LDDLENKVKYN---PSIAGILLINPDNPTGA-VYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVP 234 (433)
T ss_pred HHHHHHHHhcC---CCceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCC
Confidence 57888887643 23444444444778885 7788999999999999999999999999886655322222111 1 0
Q ss_pred CcchhhhccccC-CCCceEEEEec-----H---HHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc--hhHHHHHHH
Q psy13322 117 SPDIVTMAKGIA-NGFPMGAVVTT-----T---EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD--EELQYNCKQ 183 (195)
Q Consensus 117 ~pdi~~~sK~l~-~G~~~g~v~~~-----~---~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~--~~~~~~l~~ 183 (195)
.--+-+|||.++ .|||+||++++ + .+++.+.... ....+.+++++.++.++|+.. ++ +++++.+++
T Consensus 235 ~I~~~S~SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~ 313 (433)
T PRK06855 235 GIALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAK-MIEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEK 313 (433)
T ss_pred eEEEecCccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhh-ccccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHH
Confidence 111347799998 99999999973 2 2333332221 223456788999998888643 11 456778888
Q ss_pred HHHHHHHHhhc
Q psy13322 184 VSAQIIGYLRV 194 (195)
Q Consensus 184 ~~~~l~~~L~~ 194 (195)
+.+.+.+.|++
T Consensus 314 r~~~~~~~L~~ 324 (433)
T PRK06855 314 RSNIAYEKLKD 324 (433)
T ss_pred HHHHHHHHHhc
Confidence 88889888864
No 155
>PLN02397 aspartate transaminase
Probab=99.47 E-value=8.8e-13 Score=115.51 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~ 116 (195)
++.+++.+.++. .+..++++-+.++.+|. +++.+.+++|.++|++||+++|+||+|.+|.+.+. ...+...+ ..
T Consensus 181 ~~~l~~~l~~~~--~~~~~i~~~~P~NPTG~-v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~ 257 (423)
T PLN02397 181 FDGLLEDLKAAP--DGSFVLLHACAHNPTGV-DPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVED 257 (423)
T ss_pred HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhc
Confidence 566666666542 35667787778888995 55789999999999999999999999999865331 11122111 11
Q ss_pred Ccchh---hhccccC-CCCceEEEE--e-cHHHHHHhh----ccccccCCCchHHHHHHHHHHHHhhc--------chhH
Q psy13322 117 SPDIV---TMAKGIA-NGFPMGAVV--T-TTEIAQVLT----KAAHFNTFGGNPVGCVIASTVLDVIK--------DEEL 177 (195)
Q Consensus 117 ~pdi~---~~sK~l~-~G~~~g~v~--~-~~~i~~~l~----~~~~~~t~~~~p~~~~aa~aal~~~~--------~~~~ 177 (195)
.++++ +|||+++ .|||+||++ + ++++++.+. .......++.+.+++.++.++|+.-. -+++
T Consensus 258 ~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~ 337 (423)
T PLN02397 258 GHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGM 337 (423)
T ss_pred CCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 12233 6799999 899999984 4 555544332 22222333456778888877775421 1356
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
++.++++++.+.+.|++
T Consensus 338 ~~~~~~rr~~l~~~L~~ 354 (423)
T PLN02397 338 ADRIISMRQKLYDALEA 354 (423)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77899999999999875
No 156
>PRK07337 aminotransferase; Validated
Probab=99.47 E-value=7.2e-13 Score=114.38 Aligned_cols=146 Identities=16% Similarity=0.196 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++.+|++....+.+|. ..+.+.+++|.++|++|++++|+||+|.++.+.+. ..+.. ...++
T Consensus 153 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~-~~~~~--~~~~~ 223 (388)
T PRK07337 153 AADVEAAWG-----ERTRGVLLASPSNPTGT-SIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAA-PVSAL--SLGDD 223 (388)
T ss_pred HHHHHhhcC-----ccceEEEEECCCCCCCc-CcCHHHHHHHHHHHHHCCCEEEEeccccccccCCC-CcChh--hccCC
Confidence 466666554 24456666556777884 55788899999999999999999999998866543 22221 23345
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHh
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L 192 (195)
++ ++||.++ .|+++||+++++++++.+.........+.+++++.++.++++.- . -.+.++.++++++++.+.|
T Consensus 224 vi~~~S~SK~~~~~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L 303 (388)
T PRK07337 224 VITINSFSKYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPAL 303 (388)
T ss_pred EEEEEechhhcCCchhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 43 6689998 89999999999998888776543444456788888888887531 1 1445677888888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 304 ~~ 305 (388)
T PRK07337 304 ES 305 (388)
T ss_pred Hh
Confidence 64
No 157
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.47 E-value=1.2e-12 Score=114.99 Aligned_cols=148 Identities=12% Similarity=0.088 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++++.. ...+.+++.| .+.+|. +++.+.+++|.++|++||+++|+||+|..|.+.+..+.+...++-...
T Consensus 180 ~~~l~~~~~~----~~~~i~i~~P-~NPtG~-v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 253 (430)
T PLN00145 180 LEGVEALADE----NTVAMVIINP-NNPCGS-VYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAP 253 (430)
T ss_pred HHHHHHHhCc----CceEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCc
Confidence 5677776652 2344455555 677885 667888999999999999999999999987654432222222221222
Q ss_pred h---hhhccccC-CCCceEEEEe--cHHHHH------HhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVT--TTEIAQ------VLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV 184 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~--~~~i~~------~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~ 184 (195)
+ -+|||.++ .|||+||+++ ++.+++ .+... ...+.+.+.+.+.|+..+|+.- ++ ++.++.++++
T Consensus 254 vi~~~S~SK~~~~pG~RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~ 332 (430)
T PLN00145 254 VLTLGSISKRWVVPGWRLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKET 332 (430)
T ss_pred EEEEeccccccCCCCeeEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 3 36789987 8999999997 344432 22222 2222345778888888888742 11 4567788888
Q ss_pred HHHHHHHhhc
Q psy13322 185 SAQIIGYLRV 194 (195)
Q Consensus 185 ~~~l~~~L~~ 194 (195)
++.+.+.|++
T Consensus 333 ~~~~~~~L~~ 342 (430)
T PLN00145 333 ADICYEKIKE 342 (430)
T ss_pred HHHHHHHHhc
Confidence 9888888865
No 158
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.46 E-value=6e-13 Score=114.42 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=95.4
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G 130 (195)
++++|++-...+.+|. +.+.+.+.++.++|+ ++++||+||+|..+++.|. ...+. ...++ +-+|||++| +|
T Consensus 155 ~~~~i~l~~P~NPtG~-~~~~~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~-~~~~~--~~~~~~i~~~SfSK~~g~~G 229 (369)
T PRK08153 155 NAPLVYLANPDNPMGS-WHPAADIVAFIEALP-ETTLLVLDEAYCETAPAGA-APPID--TDDPNVIRMRTFSKAYGLAG 229 (369)
T ss_pred CCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCC-CCcEEEEeCchhhhcCccc-chhhh--hcCCCEEEEecchHhccCcc
Confidence 4555655444666786 556777888888876 4999999999998876553 22221 12344 338899999 99
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||+++++++++.+.... .+++.+++++.++.++|+.-+ .+.+++.++++++++.+.|++
T Consensus 230 lRiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~ 292 (369)
T PRK08153 230 ARVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALKDQAYLAEVVGKIAAARDRIAAIARA 292 (369)
T ss_pred hheeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998887543 346778999999999996321 135567777888888777764
No 159
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.46 E-value=7.2e-13 Score=112.24 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +..+|++....+.+|. +++.+.+++|.++|++||+++|+||+|.++..... .. ...+..++
T Consensus 116 ~~~l~~~~~------~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~-~~--~~~~~~~~ 185 (330)
T TIGR01140 116 LDRLPAALE------ELDVLVLCNPNNPTGR-LIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS-LA--PQAARFPG 185 (330)
T ss_pred HHHHHhhcc------cCCEEEEeCCCCCCCC-CCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc-hh--hHhccCCC
Confidence 566666553 2225555555778886 55789999999999999999999999987753211 11 11122233
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ ++||.+| .|+++||+++++++++.+.... ..++.++++++++.+.++..+ .++.+++++++.+++++.|++
T Consensus 186 ~i~~~S~SK~~g~~G~R~G~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 263 (330)
T TIGR01140 186 LVVLRSLTKFFGLAGLRLGFVVAHPALLARLREAL--GPWTVNGPARAAGRAALADTAWQAATRARLAAERARLAALLAR 263 (330)
T ss_pred EEEEEecchhhcCchhhhhheeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 7799999 8999999999999988887643 245567788888888887422 145678888999999888865
No 160
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.46 E-value=1.4e-12 Score=113.13 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+.. +.++|++....+.+|. ..+.+.+++|.++|++||+++|+||+|..|.+.|..+.++. .+.++
T Consensus 158 ~~~l~~~~~~-----~~~~v~~~~p~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~--~~~~~ 229 (401)
T TIGR01264 158 LKQLESLIDE-----KTAALIVNNPSNPCGS-VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLA--SLSST 229 (401)
T ss_pred HHHHHHHhcc-----CceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHH--HcCCC
Confidence 5666666542 3456677666778896 56788899999999999999999999998866553222221 12222
Q ss_pred -----hhhhccccC-CCCceEEEEecH------HHHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322 120 -----IVTMAKGIA-NGFPMGAVVTTT------EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV 184 (195)
Q Consensus 120 -----i~~~sK~l~-~G~~~g~v~~~~------~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~ 184 (195)
+-+|||+++ .|+|+||+++++ ++++.+..... ..++.+++++.++.++|+.. ++ ++.++.++++
T Consensus 230 ~~vi~~~SfSK~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~ 308 (401)
T TIGR01264 230 VPILSCGGLAKRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRTPQEYFDGTLSVLESN 308 (401)
T ss_pred CcEEEEccCcccCCCccceEEEEEecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 337799988 899999999874 34444433221 23456788888888888642 11 4567788888
Q ss_pred HHHHHHHhhc
Q psy13322 185 SAQIIGYLRV 194 (195)
Q Consensus 185 ~~~l~~~L~~ 194 (195)
++++.+.|++
T Consensus 309 r~~l~~~L~~ 318 (401)
T TIGR01264 309 AMLCYGALAA 318 (401)
T ss_pred HHHHHHHHHh
Confidence 8889888865
No 161
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.46 E-value=1e-12 Score=113.65 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-Ccccc-cc---c
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-NYWGF-EM---H 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~-~~---~ 114 (195)
.+.|++.+.+ ++++|++...++.+|. +++.+.+++|.++|++|+++||+||+|..+.+.+. ...+. .. .
T Consensus 155 ~~~l~~~~~~-----~~k~i~l~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 228 (393)
T TIGR03538 155 FDAVPESVWR-----RCQLLFVCSPGNPTGA-VLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQL 228 (393)
T ss_pred HHHHHHHHhh-----cceEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccc
Confidence 4566665542 4556666666888896 56789999999999999999999999997754431 11111 11 1
Q ss_pred CC--Ccch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHH
Q psy13322 115 GV--SPDI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQ 187 (195)
Q Consensus 115 ~~--~pdi---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~ 187 (195)
+. .+.+ -+|||.++ .|+++||+++++++++.+.......+++.+++.+.++.+++..-+ -...++.++++.+.
T Consensus 229 ~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 308 (393)
T TIGR03538 229 GRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWNDEQHVRENRALYREKFAA 308 (393)
T ss_pred cccccccEEEEecchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 11 1233 37799987 899999999999988887655433455667888888888875311 13456677888888
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
+.+.|++
T Consensus 309 ~~~~L~~ 315 (393)
T TIGR03538 309 VLEILGQ 315 (393)
T ss_pred HHHHHHh
Confidence 8887754
No 162
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.46 E-value=7.6e-13 Score=115.07 Aligned_cols=152 Identities=14% Similarity=0.203 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC--Cccccccc-CC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD--NYWGFEMH-GV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~--~~~~~~~~-~~ 116 (195)
++.+++.+++.. .+..++++-..++.+|. +++.+.+++|.++|++||++||+||+|.+|.+.+. ...+...+ ..
T Consensus 163 ~~~l~~~~~~~~--~~~~~~~~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~ 239 (404)
T PTZ00376 163 FDGMLEDLRTAP--NGSVVLLHACAHNPTGV-DPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAER 239 (404)
T ss_pred HHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhc
Confidence 577888776542 23456777888889995 55889999999999999999999999998865331 01111111 11
Q ss_pred Ccc---hhhhccccC-CCCceEEE---EecHHHHHHhhccc---cccCC-CchHHHHHHHHHHHHhhc--------chhH
Q psy13322 117 SPD---IVTMAKGIA-NGFPMGAV---VTTTEIAQVLTKAA---HFNTF-GGNPVGCVIASTVLDVIK--------DEEL 177 (195)
Q Consensus 117 ~pd---i~~~sK~l~-~G~~~g~v---~~~~~i~~~l~~~~---~~~t~-~~~p~~~~aa~aal~~~~--------~~~~ 177 (195)
.++ +.+|||.++ .|||+||+ ++++++++.+.... ..+++ +.+++++.++.++|+..+ -.+.
T Consensus 240 ~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 319 (404)
T PTZ00376 240 GVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEM 319 (404)
T ss_pred CCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 223 337799999 99999998 56777555443211 22233 346788888888886421 1244
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
+++++++++.+.+.|++
T Consensus 320 ~~~~~~~r~~l~~~L~~ 336 (404)
T PTZ00376 320 SGRIQNMRQLLYDELKA 336 (404)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56788899999888865
No 163
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.46 E-value=7.3e-13 Score=113.32 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. +++++|++....+++|.+.+ .+.+.++.+.|+ +|+++|+||+|..+.+.+....+....+..++
T Consensus 144 ~~~l~~~~~-----~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 216 (367)
T PRK02731 144 LDAMLAAVT-----PRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPN 216 (367)
T ss_pred HHHHHHHhC-----CCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCC
Confidence 566777664 24557777888889997664 455555555553 59999999999877554421222222233345
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +|||.+| .|+++||+++++++++.+.... .+++.+++++.++.++|+... -++..+.++++.+++.+.|++
T Consensus 217 ~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 294 (367)
T PRK02731 217 VVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDAFVEKSRALNAEGMAWLTEFLAE 294 (367)
T ss_pred EEEEeeehHhhcCcccceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 7799998 8999999999999988887543 245567888888888886422 145667777788888887764
No 164
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.44 E-value=6.1e-13 Score=113.56 Aligned_cols=146 Identities=14% Similarity=0.089 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++...++.+|.+.+ .+.+.++.+.|+ +|+++|+||+|..|-..+.........+..+.
T Consensus 141 ~~~l~~~~~-----~~~~~v~i~~p~NPtG~~~~-~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 213 (359)
T PRK03158 141 LEAMLKAID-----EQTKIVWICNPNNPTGTYVN-HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYEN 213 (359)
T ss_pred HHHHHHhcC-----CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCC
Confidence 456665553 24557777788999998664 455666665553 69999999999876443321111111111122
Q ss_pred ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.+|||++| .|+|+||+++++++++.+.... .+++.|++++.++.++|+..+ .+...+.++++++++.+.|++
T Consensus 214 vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 291 (359)
T PRK03158 214 LIVLRTFSKAYGLAALRVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALEDQAFLKECVEKNAEGLEQYYAFCKE 291 (359)
T ss_pred EEEEEechHhhcCcchhhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 237899999 8999999999999988886643 246778999999999986422 134555667777777777654
No 165
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.44 E-value=2.3e-12 Score=112.29 Aligned_cols=148 Identities=15% Similarity=0.120 Sum_probs=96.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++++.. ...+.+++.| .+.+|. +++.+.+++|.++|++|+++||+||+|..|.+.+..+.+...+.-.+.
T Consensus 160 ~~~l~~~~~~----~~~~~~~~nP-~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~ 233 (409)
T PLN00143 160 LDAVEAIADE----NTIAMVIINP-GNPCGS-VYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVP 233 (409)
T ss_pred HHHHHHhccc----CCEEEEEECC-CCCCCC-ccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCc
Confidence 5677766542 2444555655 678885 557888999999999999999999999988665532212222221222
Q ss_pred ---hhhhccccC-CCCceEEEEec--HHHH------HHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHH
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTT--TEIA------QVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQV 184 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~--~~i~------~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~ 184 (195)
+-+|||.++ .|||+||++++ +.+. +.+........+ .+++++.++.++|+.. .. ++.+++++++
T Consensus 234 vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~ 312 (409)
T PLN00143 234 VITLGSISKRWMIPGWGLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPEILEKTTEDFFSKTINILRAA 312 (409)
T ss_pred EEEEccchhhcCCCccceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 337799987 89999999983 3332 223222222222 4678888888888632 11 4566778888
Q ss_pred HHHHHHHhhc
Q psy13322 185 SAQIIGYLRV 194 (195)
Q Consensus 185 ~~~l~~~L~~ 194 (195)
.+++.+.|++
T Consensus 313 ~~~~~~~L~~ 322 (409)
T PLN00143 313 LAFCYDKLKE 322 (409)
T ss_pred HHHHHHHHhc
Confidence 8888777754
No 166
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.44 E-value=2.8e-12 Score=111.80 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC-CCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG-VSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~-~~p 118 (195)
++.|++.+.. ++.+|++....+.+|. +.+.+.+++|.++|++||++||+||+|..|.+.+..+.+...+. ..+
T Consensus 167 ~~~l~~~~~~-----~~~~i~~~~p~NPtG~-~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T PTZ00433 167 LDEIRRLVDD-----RTKALIMTNPSNPCGS-NFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVP 240 (412)
T ss_pred HHHHHHHhcc-----CceEEEEeCCCCCCCc-ccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCc
Confidence 4666665542 4556777666778894 55788899999999999999999999998865543122222221 111
Q ss_pred c--hhhhccccC-CCCceEEEEe------cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHHH
Q psy13322 119 D--IVTMAKGIA-NGFPMGAVVT------TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVSA 186 (195)
Q Consensus 119 d--i~~~sK~l~-~G~~~g~v~~------~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~~ 186 (195)
- +-+|||.++ .|+|+||+++ .+++++.+.... ..+++.+++++.++.++|+.. +. ++.++.++++++
T Consensus 241 ~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~ 319 (412)
T PTZ00433 241 RVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAM 319 (412)
T ss_pred eEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 2 237799997 8999999997 245666665432 233567888998888888642 11 456778888889
Q ss_pred HHHHHhhc
Q psy13322 187 QIIGYLRV 194 (195)
Q Consensus 187 ~l~~~L~~ 194 (195)
.+.+.|++
T Consensus 320 ~l~~~L~~ 327 (412)
T PTZ00433 320 VLYNHIGE 327 (412)
T ss_pred HHHHHHhc
Confidence 89888864
No 167
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.44 E-value=2.7e-12 Score=108.83 Aligned_cols=129 Identities=13% Similarity=0.142 Sum_probs=95.7
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CCCce
Q psy13322 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NGFPM 133 (195)
Q Consensus 58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G~~~ 133 (195)
.+++.| .+.+|. ..+.+.+++|.++|+++|++||+||+|..+.. .. +.....-.++ +-+|||++| .|+|+
T Consensus 128 v~l~nP-~NPTG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~-~~---s~~~~~~~~~vi~~~SfSK~~gl~GlRi 201 (330)
T PRK05664 128 LVVVNP-NNPTGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNTP-QH---SLAACAHRPGLIVLRSFGKFFGLAGARL 201 (330)
T ss_pred EEEeCC-cCCCCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCCC-cc---cccccccCCCEEEEeeccccccCCCcce
Confidence 466666 578896 55778899999999999999999999986632 11 1222211233 337899999 99999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+++++++++.+..... +++.+++++.++.++|+... .+.+++.++++++++.+.|++
T Consensus 202 G~~v~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 261 (330)
T PRK05664 202 GFVLAEPALLRALAELLG--PWTVSGPTRWLAQAALADTPWQRRQRERLLAASQRLAALLRR 261 (330)
T ss_pred EEEEeCHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888876532 34556788888888887532 246778899999999998875
No 168
>PLN02231 alanine transaminase
Probab=99.44 E-value=2.3e-12 Score=115.90 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=106.7
Q ss_pred HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc---
Q psy13322 40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH--- 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~--- 114 (195)
+++|++.+++...++ +++++++-...+.+|. +++.+.+++|.++|++||++||+||+|..+.+. +..+.++...
T Consensus 255 ~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~-vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~ 333 (534)
T PLN02231 255 ISELKKQLEDARSKGITVRALVVINPGNPTGQ-VLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARS 333 (534)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhh
Confidence 678888887542211 5666555444778895 678899999999999999999999999988664 3323233211
Q ss_pred -CC---Ccchh---hhcccc-C-CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHHHHHh-------h---
Q psy13322 115 -GV---SPDIV---TMAKGI-A-NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV-------I--- 172 (195)
Q Consensus 115 -~~---~pdi~---~~sK~l-~-~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~-------~--- 172 (195)
+. ...++ +|||++ + .|||+||+++ ++++++.+..... .+.+.+.++++++..+++- .
T Consensus 334 ~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~ 412 (534)
T PLN02231 334 MGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESY 412 (534)
T ss_pred hccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHH
Confidence 21 11233 679987 5 7999999986 5788887765432 3456677888888777742 1
Q ss_pred -c-chhHHHHHHHHHHHHHHHhhcC
Q psy13322 173 -K-DEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 173 -~-~~~~~~~l~~~~~~l~~~L~~l 195 (195)
+ .+++++.++++.+.+.+.|+++
T Consensus 413 ~~~~~~i~~~~~~r~~~l~~~L~~~ 437 (534)
T PLN02231 413 MAEKDGILSSLARRAKTLEDALNSL 437 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1 1345778999999999988753
No 169
>PRK03321 putative aminotransferase; Provisional
Probab=99.44 E-value=4.9e-13 Score=113.84 Aligned_cols=146 Identities=19% Similarity=0.208 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++|++....+.+|.+.+ .+.+.++.+.| ++++++|+||+|.+|.+.+....+.......++
T Consensus 135 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~~-~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 207 (352)
T PRK03321 135 LDAMAAAIT-----DRTRLIFVCNPNNPTGTVVT-PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPN 207 (352)
T ss_pred HHHHHHhhc-----cCCCEEEEeCCCCCcCCCcC-HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCC
Confidence 566777664 24456777777888997765 44444444433 369999999999987654431112222222345
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +|||.+| .|+|+||+++++++++.+... ...++.+++++.++.++|+..+. .+..+.+.++++.+.+.|++
T Consensus 208 vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~~~~~~~~~~~~~~r~~~~~~L~~ 285 (352)
T PRK03321 208 VVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAEDELLERVDAVVAERDRVRAALRA 285 (352)
T ss_pred EEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 6799999 899999999999999988764 24567788999988888864322 23344455556677777753
No 170
>PRK08363 alanine aminotransferase; Validated
Probab=99.43 E-value=2.1e-12 Score=111.98 Aligned_cols=148 Identities=14% Similarity=0.075 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. .++.+|++....+.+|.. .+.+.+++|.++|++||+++|+||+|..+.+.+. ..+.....-...
T Consensus 156 ~~~l~~~~~-----~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~-~~~~~~~~~~~~ 228 (398)
T PRK08363 156 IDDIRKKIT-----EKTKAIAVINPNNPTGAL-YEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGK-HVSPGSLTKDVP 228 (398)
T ss_pred HHHHHhhCC-----cceEEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCc-ccCHHHcCcCCc
Confidence 456666554 244566665667778864 4678899999999999999999999998755443 222222211222
Q ss_pred h---hhhccccC-CCCceEEEEe--cHHHHHHhhccc---cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVT--TTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI 188 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~--~~~i~~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l 188 (195)
+ -+|||.++ .|+++||+++ ++++++.+.... ...+++.+++++.++.++|+...+ .+++++++++++++
T Consensus 229 vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l 308 (398)
T PRK08363 229 VIVMNGLSKVYFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYI 308 (398)
T ss_pred EEEEecchhccCCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence 3 37899987 8999999997 666555544321 122356788888888888864322 45678888899999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
.+.|++
T Consensus 309 ~~~L~~ 314 (398)
T PRK08363 309 YKRLNE 314 (398)
T ss_pred HHHHhc
Confidence 888864
No 171
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.41 E-value=3.5e-12 Score=111.00 Aligned_cols=139 Identities=15% Similarity=0.049 Sum_probs=96.0
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcc---hhhhccccC-C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPD---IVTMAKGIA-N 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pd---i~~~sK~l~-~ 129 (195)
++++|++-..++.+|. +++.+.+++|.++|++||++||.||+|..|-+.+....++... +.... +-+|||+++ .
T Consensus 176 ~~k~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 176 KVDIIYLCFPNNPTGT-VLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFT 254 (409)
T ss_pred CceEEEEeCCCCCcCC-cCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCc
Confidence 4556666556778885 6678999999999999999999999999875444211122211 11112 337899998 9
Q ss_pred CCceEEEEecHHHHHHh-----------hccccccCC-CchHHHHHHHHHHHHh-hcc--hhHHHHHHHHHHHHHHHhhc
Q psy13322 130 GFPMGAVVTTTEIAQVL-----------TKAAHFNTF-GGNPVGCVIASTVLDV-IKD--EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 130 G~~~g~v~~~~~i~~~l-----------~~~~~~~t~-~~~p~~~~aa~aal~~-~~~--~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+|+||+++++++++.+ .......++ +.+.+++.++.++|+. ..+ +++++.++++++++.+.|++
T Consensus 255 GlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 334 (409)
T PRK07590 255 GTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES 334 (409)
T ss_pred CceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999887622 111122222 4577888888888863 211 45677888899999888864
No 172
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.41 E-value=2.8e-12 Score=109.63 Aligned_cols=135 Identities=16% Similarity=0.126 Sum_probs=97.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G 130 (195)
++++|++....+.+|. .++.+.+++|.++|++|+++||+||+|.+|...+..+... ..-.+. +.+|||.++ .|
T Consensus 142 ~~k~v~l~~p~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 142 DLDCLFLCTPNNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQ--LADNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred CCCEEEEeCCcCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHH--hccCCCEEEEEechhhccCcc
Confidence 5557777777888997 6788999999999999999999999999885444211111 111123 236789999 99
Q ss_pred CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||++++ +++++.+... ...++.+++++.++.++++.-. ..++++.++++++++.+.|++
T Consensus 219 ~RiG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 282 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQATWQWLAEEGARFYQALCA 282 (356)
T ss_pred hhheeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999984 5677777643 2345567788888888875211 145567788999999888865
No 173
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.41 E-value=2e-12 Score=109.73 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. .++++|++....+.+|...+ .+.+.++.+.|+ +++++|+||+|.++...+. .. ......++
T Consensus 132 ~~~l~~~~~-----~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~-~~--~~~~~~~~ 201 (346)
T TIGR01141 132 LEDILVAID-----DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSGEPS-TL--PLLAEYPN 201 (346)
T ss_pred HHHHHHhcC-----CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcCCcc-HH--HHHhhCCC
Confidence 566666542 35667888877888997665 444444444444 4999999999997753322 21 11122234
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ ++||.++ +|+++|++++++++.+.+.... .+++.+++++.++.++++... -.+.+++++++.+++++.|++
T Consensus 202 ~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 279 (346)
T TIGR01141 202 LIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVR--APFNLSRLAQAAAIAALRDDDFIEKTVEEINAERERLYDGLKK 279 (346)
T ss_pred EEEEehhhHhhhchhhhceeeecCHHHHHHHHhcc--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 7789997 7999999999999988887542 345668889998888887643 245678888888889888864
No 174
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.40 E-value=6.4e-12 Score=108.07 Aligned_cols=146 Identities=10% Similarity=0.057 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~--~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
+++|++.+++... ..+..+|+++.+.++.|...+ +++|.++|++||+++|+||+|+ +|..+.. .. ...
T Consensus 129 ~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~-~g~~~~~---~~--~~~ 198 (370)
T TIGR02539 129 PEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT-VGRMPVS---AK--EIG 198 (370)
T ss_pred HHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccc-cCCcCCC---HH--HcC
Confidence 6788888764211 025668888888899998777 9999999999999999999998 4433321 11 123
Q ss_pred cch--hhhccccCCCCceEEEEecHHHHHHhhccccccCC--------CchHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q psy13322 118 PDI--VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF--------GGNPVGCVIASTVLDVIKD-EELQYNCKQVSA 186 (195)
Q Consensus 118 pdi--~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~--------~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~ 186 (195)
+|+ .+++|++++|.++|++++++++++.+.+......+ ...+.+++++.++++...+ -+...+..++.+
T Consensus 199 ~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~~~~~~~~ 278 (370)
T TIGR02539 199 ADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWDEEVKKTR 278 (370)
T ss_pred CCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 47789999666799999999999988765422111 1112355666667764322 122233344456
Q ss_pred HHHHHhhcC
Q psy13322 187 QIIGYLRVV 195 (195)
Q Consensus 187 ~l~~~L~~l 195 (195)
+|++.|+++
T Consensus 279 ~l~~~L~~~ 287 (370)
T TIGR02539 279 WFVAELEDI 287 (370)
T ss_pred HHHHHHHhC
Confidence 888888753
No 175
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.40 E-value=4.7e-12 Score=113.52 Aligned_cols=146 Identities=14% Similarity=0.218 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++....+.+|.+ ++.+.+++|.++|++||++||+||+|..|.+.|..+.+... +.++
T Consensus 271 ~~~l~~~~~-----~~~k~i~i~nP~NPTG~v-~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~--~~~~ 342 (517)
T PRK13355 271 IDDIRSKIT-----SRTKAIVIINPNNPTGAL-YPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIAS--LAPD 342 (517)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCCcC-cCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHH--hCCC
Confidence 567776664 245556555557788965 57899999999999999999999999988665532223222 2344
Q ss_pred h-----hhhccccC-CCCceEEEEec--HHH----HHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhH---HHHHHH
Q psy13322 120 I-----VTMAKGIA-NGFPMGAVVTT--TEI----AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EEL---QYNCKQ 183 (195)
Q Consensus 120 i-----~~~sK~l~-~G~~~g~v~~~--~~i----~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~---~~~l~~ 183 (195)
+ -+|||.++ +|||+||++++ +++ ++.+... ....++.|.+++.++.++|+.... ++. ..++.+
T Consensus 343 ~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~~~~ 421 (517)
T PRK13355 343 LFCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGRVYE 421 (517)
T ss_pred CeEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 2 25799998 89999999954 443 3333222 223345678888888888863211 111 234556
Q ss_pred HHHHHHHHhhc
Q psy13322 184 VSAQIIGYLRV 194 (195)
Q Consensus 184 ~~~~l~~~L~~ 194 (195)
+++++.+.|++
T Consensus 422 ~r~~l~~~L~~ 432 (517)
T PRK13355 422 QRELVYNALNA 432 (517)
T ss_pred HHHHHHHHHhc
Confidence 67888888865
No 176
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.40 E-value=5.6e-12 Score=107.81 Aligned_cols=134 Identities=14% Similarity=0.150 Sum_probs=96.5
Q ss_pred eEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchh---hhccccC-C
Q psy13322 56 AAAL-IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIV---TMAKGIA-N 129 (195)
Q Consensus 56 ~aav-ivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~---~~sK~l~-~ 129 (195)
+++| +..| .+.+|. .++.+.+++|.++|++|++++|+||+|..|...+. ..+. ......+.++ +|||.++ .
T Consensus 142 ~~~v~~~~P-~NPtG~-~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~gl~ 218 (354)
T PRK06358 142 IDLVFLCNP-NNPTGQ-LISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENE-TISMINYLENFKNLIIIRAFTKFFAIP 218 (354)
T ss_pred CCEEEEeCC-CCCCCC-ccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCcc-chhHHHhccCCCCEEEEEechhhccCc
Confidence 3444 4455 778886 56789999999999999999999999998865443 2121 2222223333 7799999 9
Q ss_pred CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 130 GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 130 G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+|+||++++ +.+++.+..... .++.+.+++.++.++|+.-+- ++.++.++++++++.+.|++
T Consensus 219 G~RiG~lv~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 283 (354)
T PRK06358 219 GLRLGYGLTSNKNLAEKLLQMRE--PWSINTFADLAGQTLLDDKEYIKKTIQWIKEEKDFLYNGLSE 283 (354)
T ss_pred chhheeeecCCHHHHHHHHHhCC--CCcchHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999985 677777765432 456688888888888853221 45667788888889888865
No 177
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.40 E-value=3.6e-12 Score=110.47 Aligned_cols=153 Identities=17% Similarity=0.278 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCccccccc-CC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMH-GV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~-~~ 116 (195)
+++.|++.+.+.. .+..++++-..++.+|. +++.+.+++|.++|++||+++|+||+|.+|... +....+...+ +.
T Consensus 158 d~~~l~~~~~~~~--~~~~~~i~~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 234 (396)
T PRK09257 158 DFDAMLADLSQAP--AGDVVLLHGCCHNPTGA-DLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAA 234 (396)
T ss_pred CHHHHHHHHHhCC--CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhc
Confidence 3677888777543 23456666778888996 668899999999999999999999999988643 1111121111 22
Q ss_pred Ccch---hhhccccC-CCCceEEEEe---cHH----HHHHhhccccccCCCchHHHHHHHHHHHHhh------cc--hhH
Q psy13322 117 SPDI---VTMAKGIA-NGFPMGAVVT---TTE----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI------KD--EEL 177 (195)
Q Consensus 117 ~pdi---~~~sK~l~-~G~~~g~v~~---~~~----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~------~~--~~~ 177 (195)
.+++ -+|||.++ .|||+||+++ +++ ++..+.........+.+++++.++.+.|+.. .+ +++
T Consensus 235 ~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~ 314 (396)
T PRK09257 235 GLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEM 314 (396)
T ss_pred CCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2333 37799999 6999999973 333 3333322222233344777777777777532 11 356
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
+++++++++.+.+.|++
T Consensus 315 r~~~~~rr~~l~~~L~~ 331 (396)
T PRK09257 315 RERIKAMRQLLVEALKA 331 (396)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888999999888865
No 178
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.39 E-value=1.9e-12 Score=110.37 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p 118 (195)
++.|++.+. .++++|++..+.+++|.+.+ .+++.++|+++|+++|+||+|.+|. +...... ...+-.-
T Consensus 148 ~~~l~~~~~-----~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~vi 216 (361)
T PRK00950 148 VDSVLNAIT-----EKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEFA--EYDYTPLALEYDNLI 216 (361)
T ss_pred HHHHHHHhc-----cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhhC--ccchHHHHHhcCCEE
Confidence 566666654 24456666677889998876 6678888999999999999998774 2212111 1111111
Q ss_pred chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322 119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~ 193 (195)
-+.+|||++| .|+|+||+++++++++.+.... ..++.++++++++.++++..+ -++..+++++++++|.+.|+
T Consensus 217 ~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~l~ 291 (361)
T PRK00950 217 IGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAK--TPFSLTRLSQAAAIAALSDKEYIEKSIEHGIKSREYLYNELP 291 (361)
T ss_pred EEEeehHhhcCchhhcchhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1337899999 8999999999999988776543 234467788888888886422 13455667777777776653
No 179
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.39 E-value=8.1e-12 Score=108.55 Aligned_cols=148 Identities=13% Similarity=0.102 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+.. +.++|++....+..|. +.+.+.+++|.++|+++|+++|+||+|..|.+.+..+.....+.-.++
T Consensus 159 ~~~l~~~~~~-----~~~~v~i~~p~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 232 (403)
T TIGR01265 159 LDGLEALADE-----KTVAIVVINPSNPCGS-VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVP 232 (403)
T ss_pred HHHHHHHhCc-----CccEEEEecCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCc
Confidence 5677666542 3445666555677885 667788999999999999999999999988665532222222211122
Q ss_pred h---hhhccccC-CCCceEEEEec--HH-----HHHHhhccccccCCCchHHHHHHHHHHHHhh-cc--hhHHHHHHHHH
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVTT--TE-----IAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD--EELQYNCKQVS 185 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~~--~~-----i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~l~~~~ 185 (195)
+ -+|||.++ .|+++||++++ ++ +.+.+.... ..+++.+++++.++.++|+.. +. ++.++.+++++
T Consensus 233 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 311 (403)
T TIGR01265 233 VLSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLL-QRILGPATIVQGALPDILENTPQEFFDGKISVLKSNA 311 (403)
T ss_pred EEEEeecccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHh-hhhcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 3 37799987 89999999984 22 333333221 124566888888888888642 11 45677788888
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
+++.+.|+.
T Consensus 312 ~~l~~~L~~ 320 (403)
T TIGR01265 312 ELCYEELKD 320 (403)
T ss_pred HHHHHHHhc
Confidence 888888864
No 180
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.39 E-value=4.5e-12 Score=107.47 Aligned_cols=134 Identities=12% Similarity=0.051 Sum_probs=90.6
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcch---hhhccccC-C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDI---VTMAKGIA-N 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi---~~~sK~l~-~ 129 (195)
++++|++-..++.+|. +.+.+.+++|.++|++||++||+||++..|...+. . +. ...+-.+.+ -+|||+++ .
T Consensus 122 ~~k~v~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~-~-~~~~~~~~~~~vi~~~SfSK~~~l~ 198 (332)
T PRK06425 122 NFDLIFIVSPDNPLGN-LISRDSLLTISEICRKKGALLFIDEAFIDFVPNRA-E-EDVLLNRSYGNVIIGRSLTKILGIP 198 (332)
T ss_pred CCCEEEEeCCCCCcCC-ccCHHHHHHHHHHHHHcCCEEEEecchhccccccc-h-hHHHHhccCCCEEEEeecHHhcCCc
Confidence 3345665567888996 56788899999999999999999999998854332 1 11 111222333 37899999 9
Q ss_pred CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 130 GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 130 G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+|+||+++++++++.+...... +..+..++.+ +...+.-. .+++++.++++++++.+.|++
T Consensus 199 GlRiGy~v~~~~li~~l~~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 261 (332)
T PRK06425 199 SLRIGYIATDDYNMKISRKITEP--WSVCDPAIDF-IRSIDLDYVAKHSLDIMENERSYLINNLEA 261 (332)
T ss_pred hhhheeeecCHHHHHHHHHcCCC--CccCHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888764322 2233333222 22221111 135678888999999998875
No 181
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.38 E-value=3.5e-12 Score=108.94 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=93.8
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCce
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFPM 133 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~~ 133 (195)
.++|++...++.+|.. ++.+.+++|.++|++ +++||+||+|..|...+. .... ...+-..-+-+|||.++ .|+|+
T Consensus 155 ~k~i~l~~p~NPTG~~-~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~GlRi 231 (357)
T PRK14809 155 ERIVYLTSPHNPTGSE-IPLDEVEALAERTDE-ETLVVVDEAYGEFAERPS-AVALVEERDDVAVLRTFSKAYGLAGLRL 231 (357)
T ss_pred CcEEEEeCCCCCCCcC-CCHHHHHHHHHhCcc-CcEEEEechhhhccCCch-hHHHHhhCCCEEEEecchhHhcCcchhh
Confidence 3466676888889965 466778888888865 789999999998854332 1111 11111112448899998 89999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~ 193 (195)
||+++++++++.+.... .+++.+++++.++.++|+.-+ -++.++.++++++++.+.|+
T Consensus 232 G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~r~~l~~~L~ 290 (357)
T PRK14809 232 GYAVVPEEWADAYARVN--TPFAASELACRAGLAALDDDEHVERTVETARWAREYIREELD 290 (357)
T ss_pred eeeecCHHHHHHHHHhC--CCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988887642 356678888888888885311 13556677777888877774
No 182
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.38 E-value=8.1e-12 Score=106.38 Aligned_cols=129 Identities=14% Similarity=0.165 Sum_probs=95.8
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CCCce
Q psy13322 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NGFPM 133 (195)
Q Consensus 58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G~~~ 133 (195)
.++..| .+.+|. +.+.+.++++.+.|++++.++|+||+|..|... . +.....-.+++ -+|||.+| .|+|+
T Consensus 134 v~l~nP-nNPTG~-~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~-~---s~~~~~~~~~vi~l~SfSK~~gl~GlRi 207 (339)
T PRK06959 134 LIVVNP-NNPTAE-RLPAARLLRWHAQLAARGGTLIVDEAFADTLPA-A---SLAAHTDRPGLVVLRSVGKFFGLAGVRA 207 (339)
T ss_pred EEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc-c---cchhccCCCCEEEEecChhhcCCcchhe
Confidence 455555 678896 557788999999999999999999999987421 1 11111012333 37899999 99999
Q ss_pred EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+++++++++.+..... .++.+.+++.++.++|+..+ .+..++.++++++++.+.|++
T Consensus 208 Gy~v~~~~li~~l~~~~~--~~~vs~~~q~a~~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 267 (339)
T PRK06959 208 GFVLAAPALLAALRDALG--AWTVSGPARHAVRAAFADAAWQAAMRERLAADGARLAALLRA 267 (339)
T ss_pred EEEecCHHHHHHHHHhcC--CCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876532 45567889999999986432 246778899999999998875
No 183
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.38 E-value=1.1e-11 Score=109.89 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc---
Q psy13322 40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH--- 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~--- 114 (195)
.+.|++.+++... ..++++|++-...+.+|. +++.+.+++|.++|++||++||+||+|..+-+.+..+.+. ...
T Consensus 175 ~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~-~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~ 253 (468)
T PLN02450 175 ESALEEAYQQAQKLNLKVKGVLITNPSNPLGT-TTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDR 253 (468)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEecCCCCCCc-ccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhc
Confidence 4566666654211 136777777766778895 5678899999999999999999999999876655323222 111
Q ss_pred ---C--CCcc---hhhhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHHH
Q psy13322 115 ---G--VSPD---IVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQY 179 (195)
Q Consensus 115 ---~--~~pd---i~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~~ 179 (195)
+ ..+. +-+|||.++ +|+++|++++++ .+.+.+...... ...+.+++.++.++|+... . ++.++
T Consensus 254 ~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~ 331 (468)
T PLN02450 254 KLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKMSSF--GLVSSQTQYLLSALLSDKKFTKNYLEENQK 331 (468)
T ss_pred ccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 1 1122 337799999 999999999985 456655543211 2346788888888886421 1 34567
Q ss_pred HHHHHHHHHHHHhhc
Q psy13322 180 NCKQVSAQIIGYLRV 194 (195)
Q Consensus 180 ~l~~~~~~l~~~L~~ 194 (195)
+++++++.+.+.|++
T Consensus 332 ~l~~rr~~l~~~L~~ 346 (468)
T PLN02450 332 RLKQRQKKLVSGLEA 346 (468)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888865
No 184
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.38 E-value=9.4e-12 Score=107.40 Aligned_cols=140 Identities=18% Similarity=0.160 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++++|+++++ +.+|.+. ++|++|+++|++||+++|+|++|+.....+. ... ..+|
T Consensus 149 ~~~l~~~i~-----~~t~~viv~~~-~~~G~~~---~~l~~i~~la~~~g~~livD~~~~~~~~~~~----~~~--~~~d 213 (398)
T cd00613 149 LEALKEEVS-----EEVAALMVQYP-NTLGVFE---DLIKEIADIAHSAGALVYVDGDNLNLTGLKP----PGE--YGAD 213 (398)
T ss_pred HHHHHHhcC-----CCeEEEEEECC-CCCceec---chHHHHHHHHHhcCCEEEEEeccccccCCCC----hHH--cCCC
Confidence 566776663 36889999986 4678773 5689999999999999999999863211111 111 2467
Q ss_pred hhhh--cccc---C-CCCceEEEEecHHHHHHhhcc-----------------------------ccccCCCchHHHHHH
Q psy13322 120 IVTM--AKGI---A-NGFPMGAVVTTTEIAQVLTKA-----------------------------AHFNTFGGNPVGCVI 164 (195)
Q Consensus 120 i~~~--sK~l---~-~G~~~g~v~~~~~i~~~l~~~-----------------------------~~~~t~~~~p~~~~a 164 (195)
+++. +|.+ + ||+.+|++.+++++.+.+... ...++++++++.+.+
T Consensus 214 ~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~ 293 (398)
T cd00613 214 IVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALM 293 (398)
T ss_pred EEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHH
Confidence 7654 5776 3 357889999988887765211 113356667777777
Q ss_pred HHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322 165 ASTVLDVIKD---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 165 a~aal~~~~~---~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.++++.+.+ +++.++++++++++++.|++
T Consensus 294 a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 326 (398)
T cd00613 294 AAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE 326 (398)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777776644 45678999999999999875
No 185
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.37 E-value=8.9e-12 Score=107.27 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+++... .++++|++-+.++.+|.. .+.+.++.+.++| ++++||+||+|..|... . . .....-.++
T Consensus 154 ~~~l~~~~~~~~~-~~~k~i~l~~P~NPTG~~-~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~-~-~--~~~~~~~~~ 225 (374)
T PRK02610 154 LAAAQSAIEQTQN-PPVRVVFVVHPNSPTGNP-LTAAELEWLRSLP--EDILVVIDEAYFEFSQT-T-L--VGELAQHPN 225 (374)
T ss_pred HHHHHHHHHhhcC-CCceEEEEeCCCCCCCCC-CCHHHHHHHHhcc--CCcEEEEeccccccCcc-c-h--HHHHhcCCC
Confidence 5777777764221 266677776778889965 4677788888876 49999999999887321 1 1 111111223
Q ss_pred ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+-+|||++| .|+|+||+++++++++.+.... ..++.+.+++.++.++|+..+. .+.+....+.++.+.+.|++
T Consensus 226 ~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 303 (374)
T PRK02610 226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALEHRQELLAAIPEILQERDRLYQALQE 303 (374)
T ss_pred EEEEEecchhccCcccceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 337799997 8999999999999988887653 2345578888888888865322 12223333446667776654
No 186
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.37 E-value=5.6e-12 Score=108.87 Aligned_cols=141 Identities=16% Similarity=0.145 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+.. .++++|++....+.+|.+.+ .+ ++.++++.. +++|+||+|..|...+. ... .....+.
T Consensus 164 ~~~l~~~~~~----~~~~~v~l~~P~NPTG~~~~-~~---~l~~l~~~~-~~vi~DeaY~~~~~~~~-~~~--~~~~~~~ 231 (380)
T PLN03026 164 VPRIVEAVET----HKPKLLFLTSPNNPDGSIIS-DD---DLLKILELP-ILVVLDEAYIEFSTQES-RMK--WVKKYDN 231 (380)
T ss_pred HHHHHHHHhc----cCCcEEEEeCCCCCCCCCCC-HH---HHHHHHhcC-CEEEEECcchhhcCCcc-hHH--HHHhCCC
Confidence 5777777642 25567888888889997665 44 444555443 99999999988754332 111 1111233
Q ss_pred ---hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 120 ---IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 ---i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+-+|||.+| .|||+||+++++++++.+..... .++.+.+++.++.++|+..+ -++.++.++++++++.+.|++
T Consensus 232 viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~--~~~~~~~~q~aa~~aL~~~~~~~~~~~~~~~~r~~l~~~L~~ 309 (380)
T PLN03026 232 LIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQ--PYNVSVAAEVAACAALSNPKYLEDVKNALVEERERLFGLLKE 309 (380)
T ss_pred EEEEecchHhhcCccccceeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 237899999 99999999999998888765432 35567888888888886422 145677888889999888875
No 187
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.36 E-value=2e-11 Score=105.68 Aligned_cols=148 Identities=13% Similarity=0.030 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCC--CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~--~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++++++.|++... .+++++|+++.+.++.|...+ +++|.++|++||+++|+|++|+ +|..+. ....++..
T Consensus 141 ~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD~a~~-~g~~~~---~~~~~g~D 212 (387)
T PRK09331 141 PEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLNGAYT-VGRMPV---DGKKLGAD 212 (387)
T ss_pred HHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCcc-cCCcCC---CHHHcCCC
Confidence 6778887765310 026789999999999998877 9999999999999999999998 443221 12223433
Q ss_pred cchhhhccccCCCCceEEEEecHHHHHHhhccccc--------cCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--------NTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI 188 (195)
Q Consensus 118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~--------~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l 188 (195)
-.+.+++|+++++.++|++++++++++.+...... ...+.++...++++++++.+.+ .+..++..++.+++
T Consensus 213 ~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~~~~~~~~~~~~~l 292 (387)
T PRK09331 213 FIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVVERVKRWDEEVKKARWF 292 (387)
T ss_pred EEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445679999767899999999988876543211 1112233445556667765533 34455667778888
Q ss_pred HHHhhcC
Q psy13322 189 IGYLRVV 195 (195)
Q Consensus 189 ~~~L~~l 195 (195)
++.|+++
T Consensus 293 ~~~L~~l 299 (387)
T PRK09331 293 VDELEKI 299 (387)
T ss_pred HHHHhcC
Confidence 8888753
No 188
>PRK05839 hypothetical protein; Provisional
Probab=99.36 E-value=8e-12 Score=107.63 Aligned_cols=136 Identities=12% Similarity=-0.003 Sum_probs=94.6
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----C--CCcch---hhhcc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH----G--VSPDI---VTMAK 125 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~----~--~~pdi---~~~sK 125 (195)
++++|++-..++.+|. .++.+.+++|.++|++||++||+||+|..+...+. +.+.... + -.+.+ -+|||
T Consensus 155 ~~k~v~i~nP~NPTG~-~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~-~~s~~~~~~~~~~~~~~~vi~~~SfSK 232 (374)
T PRK05839 155 EVDLVILNSPNNPTGR-TLSLEELIEWVKLALKHDFILINDECYSEIYENTP-PPSLLEASILVGNESFKNVLVINSISK 232 (374)
T ss_pred cccEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCC-CCCHhhhhcccCccccCcEEEEecccc
Confidence 3456666667788996 55788999999999999999999999998743222 2222111 0 11233 37799
Q ss_pred ccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHh
Q psy13322 126 GIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 126 ~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L 192 (195)
.++ .|+|+||+++++++++.+........++.+.+++.++.+++..-+ -+++++.++++++.+.+.|
T Consensus 233 ~~~~~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 301 (374)
T PRK05839 233 RSSAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLDDEHAEFFRNIYAKNLKLAREIL 301 (374)
T ss_pred ccCCccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc
Confidence 987 899999999999988887655333345567777877777774311 1456777788888777655
No 189
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.36 E-value=1.6e-11 Score=108.45 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc----c
Q psy13322 40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM----H 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~----~ 114 (195)
.+.+++.+++... +.++++|++-...+..|. +++++.+++|.++|++|+++||+||+|..+-+.+..+.+... .
T Consensus 184 ~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~-~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~ 262 (447)
T PLN02607 184 PQALEAAYQEAEAANIRVRGVLITNPSNPLGA-TVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEAR 262 (447)
T ss_pred HHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCc-ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhc
Confidence 5667777654311 137777887666777885 677899999999999999999999999976444432333311 1
Q ss_pred C---CCcchh---hhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhh---cc--hhHHHHH
Q psy13322 115 G---VSPDIV---TMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI---KD--EELQYNC 181 (195)
Q Consensus 115 ~---~~pdi~---~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~---~~--~~~~~~l 181 (195)
+ ....++ ++||.|| .|+|+|++++ ++++...+...... .+.+.+++.++.+.|+-- +. ...++++
T Consensus 263 ~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l 340 (447)
T PLN02607 263 GYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERL 340 (447)
T ss_pred CCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 1 122233 6699999 9999999998 56777766543211 133566777777776531 11 3445667
Q ss_pred HHHHHHHHHHhhc
Q psy13322 182 KQVSAQIIGYLRV 194 (195)
Q Consensus 182 ~~~~~~l~~~L~~ 194 (195)
+++.+.+.+.|++
T Consensus 341 ~~~~~~~~~~L~~ 353 (447)
T PLN02607 341 RKRYEMIVQGLRR 353 (447)
T ss_pred HHHHHHHHHHHHh
Confidence 7777778777764
No 190
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.36 E-value=1.1e-11 Score=105.69 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+... ++++|++....+.+|.... .+++.+++++++.++|+||+|.++. +...... ....+.
T Consensus 137 ~~~l~~~~~~~----~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~--~~~~~~~--~~~~~~ 204 (351)
T PRK14807 137 VGSFIKVIEKY----QPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY--GNTIVDV--INEFEN 204 (351)
T ss_pred HHHHHHHhhcc----CCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc--ccchHHH--hhhCCC
Confidence 56777776532 5567777778888997766 5666777888888999999998762 3211111 111223
Q ss_pred h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+ -+|||.++ .|+|+||+++++++++.+..... .++.+++++.++.++|+...-++..+.++++++++.+.|++
T Consensus 205 vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~r~~l~~~l~~ 281 (351)
T PRK14807 205 LIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERVNYILNERERLIKELSK 281 (351)
T ss_pred EEEEecchHhcccchhceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 37799999 99999999999999998875432 24457888888888886422244556777888888888754
No 191
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.36 E-value=2.2e-12 Score=115.48 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--cCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS--NNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~--~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
.++|++++. .++++|++....+.+|. +.+++.+++|.++|++ +|++||+||+|..|.. . +.+.. ...
T Consensus 231 ~~~l~~~~~-----~~tkai~l~nP~NPTG~-v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~s~~--~~~ 299 (527)
T PRK09275 231 DSELEKLRD-----PSIKALFLVNPSNPPSV-AMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--D-FRSLF--AVL 299 (527)
T ss_pred HHHHHhhcC-----CCCCEEEEeCCcCCcCC-CCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--c-ccCHH--HhC
Confidence 355666443 35667776666788885 6688999999999965 5999999999998742 2 22221 112
Q ss_pred c-c---hhhhccccC-CCCceEEEEecHH-----HHHHh--------------------------------hccccccCC
Q psy13322 118 P-D---IVTMAKGIA-NGFPMGAVVTTTE-----IAQVL--------------------------------TKAAHFNTF 155 (195)
Q Consensus 118 p-d---i~~~sK~l~-~G~~~g~v~~~~~-----i~~~l--------------------------------~~~~~~~t~ 155 (195)
| . +-+|||+++ +|||+||++++++ +++.+ ++.....|.
T Consensus 300 ~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~ 379 (527)
T PRK09275 300 PYNTILVYSFSKYFGATGWRLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTA 379 (527)
T ss_pred CCCEEEEeehhhhccCcHhHHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhcc
Confidence 3 2 337799999 9999999999876 33322 233344566
Q ss_pred CchHHHHHH-H----HHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 156 GGNPVGCVI-A----STVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 156 ~~~p~~~~a-a----~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+.+++.|.+ + .++|+..++ +.+++.++++++.+.+.|
T Consensus 380 ~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~L 423 (527)
T PRK09275 380 GLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGL 423 (527)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 666666655 3 233443222 456788888888888776
No 192
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.36 E-value=1.9e-11 Score=109.23 Aligned_cols=152 Identities=13% Similarity=0.107 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322 40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH---- 114 (195)
Q Consensus 40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~---- 114 (195)
++.+++.+++.. ...++++|++-...+..|. +++.+.+++|.++|++|+++||+||+|..+.+.+..+.++...
T Consensus 183 ~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~-~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~ 261 (496)
T PLN02376 183 VDAADWAYKKAQESNKKVKGLILTNPSNPLGT-MLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDV 261 (496)
T ss_pred HHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCc-cCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccc
Confidence 455555443211 0136777777777778895 6678999999999999999999999999876666423232111
Q ss_pred C---CCcc-h---hhhccccC-CCCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhc---c--hhHHHH
Q psy13322 115 G---VSPD-I---VTMAKGIA-NGFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK---D--EELQYN 180 (195)
Q Consensus 115 ~---~~pd-i---~~~sK~l~-~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~---~--~~~~~~ 180 (195)
+ ..++ + -+|||.|| .|+|+|+++++ +.+.+.+..... ....+++++.++.+.|+--+ + ...+++
T Consensus 262 ~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~~--~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~ 339 (496)
T PLN02376 262 DISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSS--FGLVSSQTQLMLASMLSDDQFVDNFLMESSRR 339 (496)
T ss_pred cccccCCCeEEEEEeccccCCCCcceEEEEEECCHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCChhHHHHHHHHHHHH
Confidence 1 1233 2 37799998 99999999995 566665543321 12346778887777775321 1 234666
Q ss_pred HHHHHHHHHHHhhc
Q psy13322 181 CKQVSAQIIGYLRV 194 (195)
Q Consensus 181 l~~~~~~l~~~L~~ 194 (195)
++++.+.+.+.|++
T Consensus 340 l~~r~~~l~~~L~~ 353 (496)
T PLN02376 340 LGIRHKVFTTGIKK 353 (496)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887763
No 193
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.35 E-value=2.2e-11 Score=105.82 Aligned_cols=139 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CCCcc---hhhhccccC-C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GVSPD---IVTMAKGIA-N 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~~pd---i~~~sK~l~-~ 129 (195)
++.+|++-..++.+|. +++.+.+++|.++|++||++||+||+|..|...+......... +.... +-+|||.+| .
T Consensus 173 ~~~~i~l~nP~NPTG~-~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 173 KIDIIYLCSPNNPTGT-VLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFT 251 (402)
T ss_pred CceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCC
Confidence 4566777677888896 6678899999999999999999999999875433211111111 11112 347899998 8
Q ss_pred CCceEEEEecHHHH--------HHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322 130 GFPMGAVVTTTEIA--------QVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 130 G~~~g~v~~~~~i~--------~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+|+||++++++++ ..+.........+.+++++.++.++++.. . ..+.++.++++++++.+.|++
T Consensus 252 GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 327 (402)
T TIGR03542 252 GVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA 327 (402)
T ss_pred CcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998876 22211111122245778888877777532 1 134567778888888888764
No 194
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.34 E-value=2.9e-12 Score=110.23 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~p 118 (195)
++.|++.+.+ +.++|++....+.+|.+ .+.+.+++|.++|++++ ++|+||+|..|...+. .... ....-.+
T Consensus 141 ~~~l~~~~~~-----~~~~v~i~~P~NPTG~~-~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~-~~~~~~~~~~~~ 212 (366)
T PRK01533 141 LDEISSVVDN-----DTKIVWICNPNNPTGTY-VNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKD-FPETLPLLEKHK 212 (366)
T ss_pred HHHHHHHhCc-----CCcEEEEeCCCCCCCCC-cCHHHHHHHHHhCCCCC-EEEEEccHHHhhcccc-CcchhHHhccCC
Confidence 5667766642 34456666668889965 46788999999998876 6777999987744332 1111 1112123
Q ss_pred ch---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhh
Q psy13322 119 DI---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 119 di---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~ 193 (195)
.+ -+|||.+| .|+++||+++++++++.+.... ..++.|++++.++.++|+..+ .+.+++..+++++++.+.|+
T Consensus 213 ~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~r~~~~~~l~ 290 (366)
T PRK01533 213 NILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCK 290 (366)
T ss_pred CEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 37799999 9999999999999998887643 357789999999999996421 13455666677777777665
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
.
T Consensus 291 ~ 291 (366)
T PRK01533 291 E 291 (366)
T ss_pred h
Confidence 3
No 195
>PLN02242 methionine gamma-lyase
Probab=99.34 E-value=1.1e-11 Score=108.66 Aligned_cols=139 Identities=14% Similarity=0.030 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+.. .++++|++|.+.++.|.+.. +++|.++|++||++||+||+|+.+. .+. ..++ .|
T Consensus 152 ~e~l~~~i~~----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~~~~-~~~-----~~~g--~d 215 (418)
T PLN02242 152 LEAVKKAVVP----GKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFAPMV-LSP-----ARLG--AD 215 (418)
T ss_pred HHHHHHhcCc----CCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCCccC-CCH-----HHcC--Cc
Confidence 5677776642 14779999999999998876 9999999999999999999997442 221 1123 35
Q ss_pred hh--hhccccC-CCCc-eEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIA-NGFP-MGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~-~G~~-~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ ++||.++ .|++ +|++++++++++.+...... ..++.++..+.|++.++..-.-+..+++.+++++++.+.|+
T Consensus 216 ivv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~~r~~~~~~~a~~la~~L~ 295 (418)
T PLN02242 216 VVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLSLRMKEHCRRAMEYAKRMK 295 (418)
T ss_pred EEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44 6689998 5776 58999999888887655332 23344455556665555422224566788999999999887
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 296 ~ 296 (418)
T PLN02242 296 E 296 (418)
T ss_pred h
Confidence 5
No 196
>PRK09265 aminotransferase AlaT; Validated
Probab=99.34 E-value=2.2e-11 Score=105.85 Aligned_cols=146 Identities=15% Similarity=0.174 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.++|++.+. .++.+|++....+.+|. +.+.+.+++|.++|++||++||+||+|..+-+.+..+.+... +.++
T Consensus 158 ~~~l~~~~~-----~~~~~v~l~~P~NPtG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~--~~~~ 229 (404)
T PRK09265 158 LDDIRSKIT-----PRTKAIVIINPNNPTGA-VYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIAS--LAPD 229 (404)
T ss_pred HHHHHHhcc-----ccceEEEEECCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHH--cCCC
Confidence 466666654 24556666666778885 556788999999999999999999999988654432222211 2222
Q ss_pred --h---hhhccccC-CCCceEEEEe--cHHH----HHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhH---HHHHHH
Q psy13322 120 --I---VTMAKGIA-NGFPMGAVVT--TTEI----AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EEL---QYNCKQ 183 (195)
Q Consensus 120 --i---~~~sK~l~-~G~~~g~v~~--~~~i----~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~---~~~l~~ 183 (195)
+ -+|||.++ .|+|+||+++ ++++ ++.+... ...+++.|.+++.++.++|+..+. ..+ ..++.+
T Consensus 230 ~~vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~ 308 (404)
T PRK09265 230 LLCVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYE 308 (404)
T ss_pred ceEEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 2 35799997 8999999996 3433 3333211 223456678888888888853221 122 235677
Q ss_pred HHHHHHHHhhc
Q psy13322 184 VSAQIIGYLRV 194 (195)
Q Consensus 184 ~~~~l~~~L~~ 194 (195)
+++.+.+.|++
T Consensus 309 ~r~~~~~~L~~ 319 (404)
T PRK09265 309 QRDRAWELLNA 319 (404)
T ss_pred HHHHHHHHHhc
Confidence 78888887764
No 197
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.32 E-value=5.2e-12 Score=113.01 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
.++|++++. .++++|++....+.+|. +.+.+.+++|.++|++| +++||+||+|..|.. . +.+.. ...
T Consensus 230 ~~~l~~~~~-----~~~kai~l~nP~NPTG~-vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~-~~sl~--~~~ 298 (521)
T TIGR03801 230 DKELEKLRD-----PSIKALFVVNPSNPPSV-AMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--D-FRSLF--AEL 298 (521)
T ss_pred HHHHHHhcC-----CCCcEEEEeCCCCCCCC-CCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--c-ccchh--hhC
Confidence 355655433 25666766555677885 66789999999999987 999999999997742 2 22221 112
Q ss_pred c-c---hhhhccccC-CCCceEEEEecHH-HHH------------Hh------------------------hccccccCC
Q psy13322 118 P-D---IVTMAKGIA-NGFPMGAVVTTTE-IAQ------------VL------------------------TKAAHFNTF 155 (195)
Q Consensus 118 p-d---i~~~sK~l~-~G~~~g~v~~~~~-i~~------------~l------------------------~~~~~~~t~ 155 (195)
| . +-+|||.++ +|||+||++++++ +.+ .+ +.....+|.
T Consensus 299 ~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~ 378 (521)
T TIGR03801 299 PYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTA 378 (521)
T ss_pred CCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccC
Confidence 3 2 336799998 9999999999864 211 11 122233455
Q ss_pred CchHHHHH-----HHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 156 GGNPVGCV-----IASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 156 ~~~p~~~~-----aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
+.+...+. ++.++++.... ++.++.++++.+.+.+.|
T Consensus 379 g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L 422 (521)
T TIGR03801 379 GLSTPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL 422 (521)
T ss_pred CCCcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc
Confidence 55554444 34444443222 456778888888888776
No 198
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.31 E-value=1.8e-11 Score=104.76 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=91.0
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcch---hhhccccC-CC
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDI---VTMAKGIA-NG 130 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi---~~~sK~l~-~G 130 (195)
.+++++-...+.+|.+.. .++|.++++++++ +|+||+|..|.+.+. ..+. ......+.+ -+|||.++ .|
T Consensus 149 ~~~~~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~G 222 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPG 222 (360)
T ss_pred CCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCc
Confidence 345555566888998665 4456777888885 666999998865553 2122 111222333 37799999 99
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||+++++++++.+.... ..++.+.+++.++.++|+... .+.+.+.++++++++.+.|++
T Consensus 223 lRiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 285 (360)
T PRK07392 223 LRLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALADRDFQQQTWAWLPPAREALFQGLAS 285 (360)
T ss_pred hheeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888876533 345678899999988886422 134456788888888888865
No 199
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.31 E-value=2.8e-11 Score=103.97 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=94.8
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G 130 (195)
++.+|++....+.+|.+. +.+.++++.+.|+ +++++|+||+|..|..... . ....+..+++ -+|||++| .|
T Consensus 152 ~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~~~~~-~--~~~~~~~~~vi~~~SfSK~~gl~G 226 (364)
T PRK04781 152 NAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFSDVPS-A--VGLLARYDNLAVLRTLSKAHALAA 226 (364)
T ss_pred CCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhcCCcc-h--HHHHhhCCCEEEEecChhhccccc
Confidence 556777777788899755 5677888887774 4899999999998753211 1 1111223343 37899999 99
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c-hhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||+++++++++.+.... ..++.+.+++.++.++|+... . .+.++.++++++.+.+.|++
T Consensus 227 lRvGy~v~~~~l~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 291 (364)
T PRK04781 227 ARIGSLIANAELIAVLRRCQ--APYPVPTPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQ 291 (364)
T ss_pred ceeeeeeCCHHHHHHHHhcc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999887653 245667788888888886431 1 34456678888888888865
No 200
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.30 E-value=1.7e-11 Score=103.31 Aligned_cols=149 Identities=13% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCccccccc
Q psy13322 39 FYEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMH 114 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~ 114 (195)
++++|++++.+..+. .++++|+++...+.+| .. +.+.+++|.++|++||+++|+||+|..+. ..|. .....
T Consensus 109 d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~-~~-~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~---~~~~~ 183 (338)
T cd06502 109 TPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGT-VY-PLDELKAISALAKENGLPLHLDGARLANAAAALGV---ALKTY 183 (338)
T ss_pred CHHHHHHHhhccCCCcCCcceEEEEEeecCCcc-cc-CHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCC---CHHHH
Confidence 367888887643110 2567888887766544 33 77889999999999999999999985221 1121 12112
Q ss_pred CCCcchh--hhccccC-CCCceEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 115 GVSPDIV--TMAKGIA-NGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 115 ~~~pdi~--~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
...+|++ ++||.++ .| .+++++++++++.+.... +..+++.+++++++++++|+.....+..+++.++++++.
T Consensus 184 ~~~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~l~ 261 (338)
T cd06502 184 KSGVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALENDLWLRRLRHDHEMARRLA 261 (338)
T ss_pred HhcCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 2234544 6679997 33 234557888888776543 234555677788888888875322455678888889999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 262 ~~L~~ 266 (338)
T cd06502 262 EALEE 266 (338)
T ss_pred HHHHh
Confidence 98875
No 201
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.30 E-value=2.8e-11 Score=104.20 Aligned_cols=137 Identities=16% Similarity=0.069 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++|++.++.|.+.+ +++|.++|++||+++|+|++|+. +.... . .....|
T Consensus 115 ~~~l~~~i~-----~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~~-~~~~~---~---~~~g~D 178 (369)
T cd00614 115 PEALEAAIK-----PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFAT-PYLQR---P---LELGAD 178 (369)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-hhcCC---h---hhhCCc
Confidence 566666664 25778999999999998877 99999999999999999999863 22111 1 123456
Q ss_pred hh--hhccccCC-C-CceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV--TMAKGIAN-G-FPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~--~~sK~l~~-G-~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +++|.+++ | .++|++++++ ++++.+...........+|+.+++++..|+.+ +..+++..++..++.+.|++
T Consensus 179 ivv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl--~~r~~~~~~na~~la~~L~~ 256 (369)
T cd00614 179 IVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTL--PLRMERHSENALKVAEFLEK 256 (369)
T ss_pred EEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHc
Confidence 66 66799984 4 6789999987 78887765443334456788777776666543 33567778888888888764
No 202
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.30 E-value=7.3e-11 Score=104.87 Aligned_cols=141 Identities=16% Similarity=0.043 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++++|++++.+..+ + .||+ ++++|+.++ +++|+++|++||++|++|++|. +|..+..... ...+ .
T Consensus 171 D~d~Le~~l~~~~p--k--lIv~~~S~~s~~~D-------~a~i~~ia~~~ga~LlvD~AH~-~Gli~~~~~~-~p~~-~ 236 (475)
T PLN03226 171 DYDKLEKKAMLFRP--K--LIIAGASAYPRDWD-------YARMRKIADKVGALLMCDMAHI-SGLVAAQEAA-SPFE-Y 236 (475)
T ss_pred CHHHHHHHHhhcCC--e--EEEEecCcCCCccC-------HHHHHHHHHHcCCEEEEEchhh-hCcccCCCCC-CCCC-C
Confidence 47899998876532 2 4454 888876654 6688999999999999999998 6555532211 1112 3
Q ss_pred cchh--hhccccCCCCceEEEEecHHHH-----------HH--hhccc--cccCCCchHHHHHHHHHHHHhhcc---hhH
Q psy13322 118 PDIV--TMAKGIANGFPMGAVVTTTEIA-----------QV--LTKAA--HFNTFGGNPVGCVIASTVLDVIKD---EEL 177 (195)
Q Consensus 118 pdi~--~~sK~l~~G~~~g~v~~~~~i~-----------~~--l~~~~--~~~t~~~~p~~~~aa~aal~~~~~---~~~ 177 (195)
.|++ +++|+|.| -+.|++++++++. +. ..+.. ..++.+.++..+++..++|+.+.+ +..
T Consensus 237 ~Div~~t~hK~L~G-P~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~ 315 (475)
T PLN03226 237 CDVVTTTTHKSLRG-PRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAY 315 (475)
T ss_pred CeEEEecCcccccC-CCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHH
Confidence 5765 55699953 1237777777543 32 22222 233444567778888888998754 356
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
.+++.++.++|.+.|++
T Consensus 316 ~~~~~~na~~L~~~L~~ 332 (475)
T PLN03226 316 QKQVKANAAALANRLMS 332 (475)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999999999998864
No 203
>PRK09105 putative aminotransferase; Provisional
Probab=99.30 E-value=2.1e-11 Score=104.96 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=92.2
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CCC
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NGF 131 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G~ 131 (195)
..+|++-...+.+|.+ ++.+.++++.+.| ++++++|+||+|..|+. +. . .....+..++++ +|||++| .||
T Consensus 166 ~~~v~l~nP~NPTG~~-~~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~-~~-s-~~~~~~~~~~vi~~~SfSK~~g~~Gl 240 (370)
T PRK09105 166 AGLIYICNPNNPTGTV-TPRADIEWLLANK-PAGSVLLVDEAYIHFSD-AP-S-VVDLVAQRKDLIVLRTFSKLYGMAGM 240 (370)
T ss_pred CCEEEEeCCCCCCCcC-cCHHHHHHHHHhC-CCCcEEEEECchHHhcc-Cc-c-hHHHHhhCCCEEEEecccHhhcCCcc
Confidence 4456655567889975 6778888888876 45999999999976642 11 0 111112234533 6799999 899
Q ss_pred ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+||+++++++++.+... ..+..+..++.++.++|+..+ -+..+++++++++++.+.|++
T Consensus 241 RiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~ 301 (370)
T PRK09105 241 RLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQRRAENAAVREDTIAWLKK 301 (370)
T ss_pred ceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888765 233466777888888886421 145567888889999888874
No 204
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.30 E-value=4.8e-11 Score=105.71 Aligned_cols=155 Identities=14% Similarity=0.068 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCccccccc--
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMH-- 114 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~-- 114 (195)
+++.|++.+....+ +++++|+++...+.+|-.+++.+.|++|+++|++||++||+|++|.. ..+...+..+....
T Consensus 162 d~e~Le~~i~~~~~-~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si 240 (460)
T PRK13238 162 DLEKLEALIEEVGA-ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSI 240 (460)
T ss_pred CHHHHHHHHhhcCC-CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCH
Confidence 36889999886543 37899999988887776778899999999999999999999998752 11111000001100
Q ss_pred -CCCcchhhhccccC-CCCc------eEEEEec-HHHHHHhhccc---c-ccCCCchHHH-HHHHHHHHHhhcchhHHHH
Q psy13322 115 -GVSPDIVTMAKGIA-NGFP------MGAVVTT-TEIAQVLTKAA---H-FNTFGGNPVG-CVIASTVLDVIKDEELQYN 180 (195)
Q Consensus 115 -~~~pdi~~~sK~l~-~G~~------~g~v~~~-~~i~~~l~~~~---~-~~t~~~~p~~-~~aa~aal~~~~~~~~~~~ 180 (195)
++...+..+||.++ +||+ .|+++++ +++++.++... + ..|+++.+.. +.|...+|+...+++..+.
T Consensus 241 ~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~~~~~~ 320 (460)
T PRK13238 241 KEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAY 320 (460)
T ss_pred HHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhChHHHHH
Confidence 11111123344444 3433 3466666 47888776653 2 3477876665 4555556665434454555
Q ss_pred HHHHHHHHHHHhhc
Q psy13322 181 CKQVSAQIIGYLRV 194 (195)
Q Consensus 181 l~~~~~~l~~~L~~ 194 (195)
..+++++|.+.|++
T Consensus 321 ~~~~~~~l~~~L~~ 334 (460)
T PRK13238 321 RIGQVEYLGEGLEE 334 (460)
T ss_pred HHHHHHHHHHHHHH
Confidence 55567889888865
No 205
>PLN02721 threonine aldolase
Probab=99.27 E-value=9.7e-11 Score=99.26 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 39 FYEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
+++.|++.+++.... .+.++|++++++++.|...++.+++++|.++|++||++||+||+|. ++..............
T Consensus 119 d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~-~~~~~~~~~~~~~~~~ 197 (353)
T PLN02721 119 DLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI-FNASVALGVPVHRLVK 197 (353)
T ss_pred CHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh-hcchhhhCCCHHHHhh
Confidence 368888888743211 2678999999988765567788999999999999999999999986 3321100001111111
Q ss_pred Ccc--hhhhccccCCCCceEE-EEecHHHHHHhhccccccCCCch--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322 117 SPD--IVTMAKGIANGFPMGA-VVTTTEIAQVLTKAAHFNTFGGN--PVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY 191 (195)
Q Consensus 117 ~pd--i~~~sK~l~~G~~~g~-v~~~~~i~~~l~~~~~~~t~~~~--p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~ 191 (195)
..| ++++||++++ ++|+ +++++++++.+.........+.+ +..+++++.+++.. .+..++..++.+++.+.
T Consensus 198 ~~d~~~~s~sK~l~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~l~~~ 273 (353)
T PLN02721 198 AADSVSVCLSKGLGA--PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQEN--VPKLEDDHKKAKLLAEG 273 (353)
T ss_pred hCCEEEEecccccCC--ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 223 4567899973 3554 66788887765443211111111 22233344444432 11233445667788887
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 274 L~~ 276 (353)
T PLN02721 274 LNQ 276 (353)
T ss_pred HHh
Confidence 764
No 206
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.27 E-value=3.9e-11 Score=103.12 Aligned_cols=145 Identities=16% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-ccc-CCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMH-GVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~-~~~ 117 (195)
++++++.+.. +.++|++....+.+|. .++.+.+++|.++|++ ++++|+||+|..|...+. +.+. ... ...
T Consensus 149 ~~~l~~~~~~-----~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~ 220 (371)
T PRK05166 149 LDALCAAVAR-----APRMLMFSNPSNPVGS-WLTADQLARVLDATPP-ETLIVVDEAYAEYAAGDD-YPSALTLLKARG 220 (371)
T ss_pred HHHHHHhhhc-----CCCEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcC-cccHHHHHhhcC
Confidence 5667776653 2345666666788896 4567778888888864 899999999998753222 2121 111 112
Q ss_pred cchh---hhccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy13322 118 PDIV---TMAKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGY 191 (195)
Q Consensus 118 pdi~---~~sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~ 191 (195)
+.++ +|||.++ .|+|+||+++ ++++++.+.... ..++.+.+++.++.++|..-+ -++.++.++++++++.+.
T Consensus 221 ~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~ 298 (371)
T PRK05166 221 LPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVR--TPFNVNGAAQAAALAALDDEEHLAKGVALALAERERLKKE 298 (371)
T ss_pred CCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhc--cCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 6899999 9999999775 678888776532 235568888888888886321 144567778888888888
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 299 L~~ 301 (371)
T PRK05166 299 LAE 301 (371)
T ss_pred HHH
Confidence 864
No 207
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.26 E-value=7.4e-11 Score=102.76 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=93.3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccCCCC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIANGF 131 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~~G~ 131 (195)
+++++++-...+.+|.+ ++.+.+++|.++|++||++||+||+|..+ .....+..... ...+. +.+|||....|+
T Consensus 179 ~~~~i~l~~P~NPTG~~-~s~~~~~~l~~~a~~~~~~iI~De~Y~~~-~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pGl 255 (416)
T PRK09440 179 DTGAICVSRPTNPTGNV-LTDEELEKLDALARQHNIPLLIDNAYGPP-FPGIIFSEATP-LWNPNIILCMSLSKLGLPGV 255 (416)
T ss_pred CceEEEEecCCCCCCcc-CCHHHHHHHHHHHHHcCCcEEEeCCcccc-CCCcchhhcCc-cccCCeEEEecccccCCCcc
Confidence 55677776778889965 57889999999999999999999999643 11110101100 11223 347799734899
Q ss_pred ceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhc--c---hhHHHHHHHHHHHHHHHhh
Q psy13322 132 PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIK--D---EELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 132 ~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~--~---~~~~~~l~~~~~~l~~~L~ 193 (195)
|+||+++++++++.+.........+.+++++.++.++|+... + +.++..++++.+.+++.|+
T Consensus 256 RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~ 322 (416)
T PRK09440 256 RCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLR 322 (416)
T ss_pred eEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888765444445668889999988886432 1 1245556667777766664
No 208
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.26 E-value=1.7e-10 Score=100.92 Aligned_cols=141 Identities=16% Similarity=0.082 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
+++++++.+... +.++|++ ++++|+.| + +++|.++|++||++||+|++|+ +|..+.+. .....+ .
T Consensus 156 d~~~le~~l~~~----~~klVi~~~~~~g~~~---d----l~~l~~la~~~g~~livD~Aha-~G~~~~g~-~~~~~~-~ 221 (416)
T PRK13034 156 DYDEVEELAKEH----KPKLIIAGFSAYPREL---D----FARFREIADEVGALLMVDMAHI-AGLVAAGE-HPNPFP-H 221 (416)
T ss_pred CHHHHHHHHhhc----CCeEEEECCCcccccc---C----HHHHHHHHHHcCCEEEEeCccc-ccCcccCC-CCCCCC-C
Confidence 367788877643 3457777 57766544 3 8888999999999999999998 66555421 111112 3
Q ss_pred cchh--hhccccCCCCceEEEEecHH-HHHHhhcccccc-CCCc-hHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHH
Q psy13322 118 PDIV--TMAKGIANGFPMGAVVTTTE-IAQVLTKAAHFN-TFGG-NPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIG 190 (195)
Q Consensus 118 pdi~--~~sK~l~~G~~~g~v~~~~~-i~~~l~~~~~~~-t~~~-~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~ 190 (195)
.|++ +++|+++|+. .|+++++++ +.+.++...+.. +.+. ++..++++++.++.++. .+.+++++++.++|++
T Consensus 222 ~Di~~~s~~K~l~g~~-GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~ 300 (416)
T PRK13034 222 AHVVTTTTHKTLRGPR-GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAE 300 (416)
T ss_pred ceEEEEeCcccCCCCC-CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence 5655 5569996432 467777654 444444332222 1222 33333344455555432 4568999999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 301 ~L~~ 304 (416)
T PRK13034 301 VLKE 304 (416)
T ss_pred HHHH
Confidence 9864
No 209
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.25 E-value=6.9e-11 Score=102.23 Aligned_cols=137 Identities=15% Similarity=0.126 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|.+.++.|.+.+ +++|.++|+++|+++|+||+++.. .... .. ...+|
T Consensus 129 ~~~l~~~i~-----~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~~~-~~~~---pl---~~g~D 192 (380)
T TIGR01325 129 LNAWEAAVK-----PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFATP-VLQQ---PL---KLGAD 192 (380)
T ss_pred HHHHHHhcC-----CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCC
Confidence 455665553 36789999999999998876 999999999999999999998732 1111 11 23457
Q ss_pred hhh--hccccCC-CCce-EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVT--MAKGIAN-GFPM-GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~--~sK~l~~-G~~~-g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++ ++|.+++ |..+ |++++++++++.+...........+|..+..++..++.+.. ..++..++...+.+.|++
T Consensus 193 ivv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~--r~~~~~~~a~~la~~L~~ 269 (380)
T TIGR01325 193 VVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL--RMQKQFDSALAIAEWLQA 269 (380)
T ss_pred EEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH--HHHHHHHHHHHHHHHHHc
Confidence 765 5799985 5654 77888888877776543222233466766666666665532 455566666666666653
No 210
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.24 E-value=2.5e-10 Score=96.58 Aligned_cols=144 Identities=13% Similarity=0.153 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.+.++ .++..|++--..+.+|.+.+ +++|.++|++||+++|+|++|+ +|.. .+.+..+++..-
T Consensus 113 ~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g~~---~~~~~~~~~d~~ 181 (355)
T TIGR03301 113 LNRIEEALAAD---PDITHVATVHHETTTGILNP----LEAIAKVARSHGAVLIVDAMSS-FGAI---PIDIEELDVDAL 181 (355)
T ss_pred HHHHHHHHHhC---CCceEEEEEecCCcccchhH----HHHHHHHHHHcCCEEEEEeccc-cCCc---ccchhhcCccEE
Confidence 67888888753 24545554344556787766 8999999999999999999887 5422 222333333222
Q ss_pred hhhhccccCCCCceEEEEecHHHHHHhhccc-----------------cccCCCchHHHHHHHHHHHHhhcc----hhHH
Q psy13322 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----------------HFNTFGGNPVGCVIASTVLDVIKD----EELQ 178 (195)
Q Consensus 120 i~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~-----------------~~~t~~~~p~~~~aa~aal~~~~~----~~~~ 178 (195)
+.+++|+++++..+|++++++++++.+.... ....++.++..+.++.++++.+.+ ++..
T Consensus 182 ~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~ 261 (355)
T TIGR03301 182 IASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARI 261 (355)
T ss_pred EecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3466799864333799999999887765211 012335577777888888887633 4466
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++++++++++++.|++
T Consensus 262 ~~~~~~~~~~~~~L~~ 277 (355)
T TIGR03301 262 ARYRRNRELLVDGLRA 277 (355)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888999999998865
No 211
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.24 E-value=1.3e-10 Score=102.89 Aligned_cols=150 Identities=16% Similarity=0.150 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccC---
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG--- 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~--- 115 (195)
.+.|++.+.++ +++++.+-| .++.+|. ..+.+-=++|.++|++||++||=||+++.|.+.+...-+...+.
T Consensus 215 ~e~le~~~~~~----~~k~~y~~P~~qNPtG~-tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~ 289 (459)
T COG1167 215 PEALEEALAQW----KPKAVYVTPTFQNPTGV-TMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPG 289 (459)
T ss_pred HHHHHHHHhhc----CCcEEEECCCCCCCCCC-ccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCC
Confidence 68888888864 566788888 6677886 55677789999999999999999999998876654221122221
Q ss_pred CCcchhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh--hcc--hhHHHHHHHHHHHHHHH
Q psy13322 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--IKD--EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 116 ~~pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~~~--~~~~~~l~~~~~~l~~~ 191 (195)
-.--+-+|||.++.|+++||+++++++++.+....+..+.+.+++.+.+...-+.. ..+ ..++..++++++.+.+.
T Consensus 290 rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G~~~~hl~~lR~~y~~rr~~l~~~ 369 (459)
T COG1167 290 RVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLSGHYDRHLRRLRREYARRRDALLEA 369 (459)
T ss_pred CEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11225599999999999999999999999998877777888888888877777763 222 56778888888888888
Q ss_pred hhc
Q psy13322 192 LRV 194 (195)
Q Consensus 192 L~~ 194 (195)
|++
T Consensus 370 L~~ 372 (459)
T COG1167 370 LAE 372 (459)
T ss_pred HHH
Confidence 864
No 212
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.24 E-value=6.5e-11 Score=101.63 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=99.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G 130 (195)
+...|++-...+.+|... +.+.++++.+.+.+ +.+||+||++..|.. .. +.......++++ ||||++| .|
T Consensus 145 ~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~--~~--~~~l~~~~~nlivlRTfSKa~gLAG 218 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLL-PREELRALLEALPE-GGLVVIDEAYIEFSP--ES--SLELLKYPPNLIVLRTFSKAFGLAG 218 (356)
T ss_pred CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeCchhhcCC--ch--hhhhccCCCCEEEEEecHHhhhcch
Confidence 455677777778888655 56778888888888 999999999998854 21 122222223343 8899999 99
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||+++++++++.+.... ..|+.|.++++++.++|+.-+. ++..+.+.+.+++|.+.|+.
T Consensus 219 lRlGy~ia~~~~i~~l~~vr--~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~ 281 (356)
T COG0079 219 LRVGYAIANPELIAALNKVR--PPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKA 281 (356)
T ss_pred hceeeccCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998753 3456678999999998876432 56778888889999988875
No 213
>PRK06460 hypothetical protein; Provisional
Probab=99.23 E-value=1.4e-10 Score=100.31 Aligned_cols=127 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCC--C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIAN--G 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~--G 130 (195)
++++|++|.+.++.|.+.+ +++|.++|++||+++|+||+|... .... .. ..+ .|++ ++||.++| +
T Consensus 130 ~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~~~-~~~~---~l-~~~--~divv~S~sK~l~G~~~ 198 (376)
T PRK06460 130 RYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFSTP-INQK---PL-ELG--ADIVVHSASKFLAGHND 198 (376)
T ss_pred CceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---hh-hcC--CCEEEeecceeccCCCC
Confidence 6779999999999998777 788999999999999999998732 2111 11 122 3554 66899973 3
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
..+|++++++++++.+.......+.+.+|..+..++..++.+ +..++++.+++++|.+.|++
T Consensus 199 ~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l--~~r~~~~~~n~~~l~~~L~~ 260 (376)
T PRK06460 199 VIAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTL--KIRMDVINRNAEQIAEFLEG 260 (376)
T ss_pred ceEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhH--HHHHHHHHHHHHHHHHHHHc
Confidence 568999999998888865443334445665555554555544 34677888999999888864
No 214
>PRK07049 methionine gamma-lyase; Validated
Probab=99.23 E-value=2.2e-10 Score=100.65 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH---cCCEEEEeccccCccccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS---NNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~---~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
.+.+++.+.+...+.++++|++|+..++.|.+. +.+.+.+|++.|++ +++++|+||++.+..... ... ++
T Consensus 159 ~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~-d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~----pl~-~g- 231 (427)
T PRK07049 159 EAAIGAAAEAAAAKGRVSLILIETPANPTNSLV-DVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK----PLE-HG- 231 (427)
T ss_pred HHHHHHHHHhhccCCCceEEEEECCCCCCCccc-CHHHHHHHHHHhhhcccCCCEEEEECCccccccCC----ccc-cC-
Confidence 355666665332113688999999999999765 44445555544432 799999999976432111 111 22
Q ss_pred Ccchh--hhccccC--CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322 117 SPDIV--TMAKGIA--NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 117 ~pdi~--~~sK~l~--~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L 192 (195)
.||+ ++||.++ +|+++|++++++++++.+.........+.+|+.+.+++..|+.+ ...+++..++.+.+.+.|
T Consensus 232 -~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~tl--~~R~~~~~~~a~~la~~L 308 (427)
T PRK07049 232 -ADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLETL--VLRMERANRNARAVAEFL 308 (427)
T ss_pred -CCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHH
Confidence 3544 7789999 57999999999998888765433334456888888887777654 334566677888888877
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 309 ~~ 310 (427)
T PRK07049 309 RD 310 (427)
T ss_pred Hh
Confidence 64
No 215
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.22 E-value=6.2e-11 Score=101.17 Aligned_cols=142 Identities=14% Similarity=0.130 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccc-ccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG-FEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~-~~~~~~~p 118 (195)
++.|++.+... ++++|++-...+.+|.+. +.+.+++|.++| ++++|+||+|..|... . +.. ....+-.-
T Consensus 142 ~~~l~~~~~~~----~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~~~~-~-~~~~~~~~~~vi 211 (356)
T PRK04870 142 LPAMLAAIAEH----RPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPFAGD-S-WLPRLARFPNLL 211 (356)
T ss_pred HHHHHHHhhcC----CCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhhcCc-c-hHHHHhhCCCEE
Confidence 57777777643 445666655577888655 667788887777 7899999999877431 1 111 11111111
Q ss_pred chhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 119 di~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
-+-+||| ++ .|+|+||+++++++++.+.... ..++.+.+++.++..+++..+. ++.+++++++++++.+.|++
T Consensus 212 ~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 286 (356)
T PRK04870 212 VMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAAQLRAERTRLAAALAA 286 (356)
T ss_pred EEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1347799 77 7999999999999888876543 2345677888888888764322 45667788888888888865
No 216
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.22 E-value=1.4e-10 Score=98.67 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCCCcchhhhccccC-CCCceE
Q psy13322 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGVSPDIVTMAKGIA-NGFPMG 134 (195)
Q Consensus 57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~~pdi~~~sK~l~-~G~~~g 134 (195)
++|++-...+.+|... +.+.+++| + +++++||+||+|..|. +..+... ....-.--+.+|||+++ .|+|+|
T Consensus 140 ~~i~i~nP~NPTG~~~-s~~~l~~l---~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG 212 (335)
T PRK14808 140 DVVFIPNPNNPTGHVF-EREEIERI---L-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAFSLAAQRIG 212 (335)
T ss_pred CEEEEeCCCCCCCCCc-CHHHHHHH---H-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhccCcccceE
Confidence 4677777778889755 55556555 4 5899999999999873 3212111 11111111337799999 899999
Q ss_pred EEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 135 AVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 135 ~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
|+++++++++.+.... ..++.+++++.++.++++..+. .+..+.++++++++.+.|++
T Consensus 213 ~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 271 (335)
T PRK14808 213 YVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALRE 271 (335)
T ss_pred EEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886543 2355677888888888875322 44556777778888888864
No 217
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.22 E-value=3e-11 Score=103.21 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. ++++|++-...+.+|. ..+.+.+++|.+.|++ +++||+||+|..|..... . .......+.
T Consensus 136 ~~~l~~~~~------~~~lv~l~nPnNPTG~-~~~~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s-~--~~~~~~~~n 204 (351)
T PRK01688 136 LPAIADNLD------GVKVVYVCSPNNPTGN-LINPQDLRTLLELTRG-KAIVVADEAYIEFCPQAS-L--AGWLAEYPH 204 (351)
T ss_pred HHHHHHhcc------CCcEEEEeCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEECchhhcCCCCC-h--HHHHhhCCC
Confidence 455555442 3446666677788996 5567788888888876 689999999988742111 1 111122344
Q ss_pred h---hhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHh
Q psy13322 120 I---VTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 i---~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L 192 (195)
+ -+|||++| .|+|+||+++++++++.+.+... .++.+.+++.++.++|+.. + -.+.++.++++++++.+.|
T Consensus 205 ~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~--~~~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L 282 (351)
T PRK01688 205 LVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIA--PYPLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAAL 282 (351)
T ss_pred EEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccC--CCCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 37899999 89999999999999888876532 3455667777777887632 1 1345567778888888888
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 283 ~~ 284 (351)
T PRK01688 283 KE 284 (351)
T ss_pred Hh
Confidence 65
No 218
>PRK08637 hypothetical protein; Provisional
Probab=99.22 E-value=3.4e-10 Score=97.95 Aligned_cols=153 Identities=16% Similarity=0.082 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----cCCEEEEeccccCccccCCCcccc-c
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-----NNGLFISDEVQTGFGRTGDNYWGF-E 112 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-----~~~llI~DEv~~g~gr~G~~~~~~-~ 112 (195)
+++.+++.++.... ....++++-..++.+| ..++.+.+++|.++|++ |+++||+||+|.+|.+.+....+. .
T Consensus 131 d~~~l~~~~~~~~~-~~~~~~~~~~P~NPTG-~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~ 208 (388)
T PRK08637 131 DTDALKEALQAAYN-KGKVIVILNFPNNPTG-YTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFA 208 (388)
T ss_pred CHHHHHHHHHhhcc-CCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHH
Confidence 36778777762211 2334556665688899 57788999999999875 999999999999886665422111 1
Q ss_pred c-cCCCcch--h---hhccccC-CCCceEEEEec------HHHHHHhhccc----cccCCCchHHHHHHHHHHHHhhc--
Q psy13322 113 M-HGVSPDI--V---TMAKGIA-NGFPMGAVVTT------TEIAQVLTKAA----HFNTFGGNPVGCVIASTVLDVIK-- 173 (195)
Q Consensus 113 ~-~~~~pdi--~---~~sK~l~-~G~~~g~v~~~------~~i~~~l~~~~----~~~t~~~~p~~~~aa~aal~~~~-- 173 (195)
. .+..+++ + ++||.++ .|+|+||++.+ +++++.+.... ....++.|.+++.++.++|+.-.
T Consensus 209 ~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~ 288 (388)
T PRK08637 209 ALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEFD 288 (388)
T ss_pred HhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHHH
Confidence 1 1223342 2 5799988 89999999854 57777665321 11234668889999988885311
Q ss_pred c--hhHHHHHHHHHHHHHHHhh
Q psy13322 174 D--EELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 174 ~--~~~~~~l~~~~~~l~~~L~ 193 (195)
+ ...+..++++.+.+.+.|+
T Consensus 289 ~~~~~~~~~~~~r~~~~~~~l~ 310 (388)
T PRK08637 289 KEKQEKFQILKERYEKTKEVLY 310 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334456666666666553
No 219
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.21 E-value=4.3e-10 Score=96.24 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
+++|++.+.+.... .++++|++....++.|...+ +++|.++|++||+++|+||+|+ +|... +....++..
T Consensus 122 ~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~~~~d 193 (361)
T cd06452 122 PEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VGRMP---VSGKELGAD 193 (361)
T ss_pred HHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cCCcC---CCHHHcCCC
Confidence 57777777642110 25678888877788887655 8999999999999999999997 43221 122223332
Q ss_pred cchhhhccccCCCCceEEEEecHHHHHHhhccccc------cCCC--chHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHH
Q psy13322 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF------NTFG--GNPVGCVIASTVLDVIKD-EELQYNCKQVSAQI 188 (195)
Q Consensus 118 pdi~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t~~--~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l 188 (195)
-.+.+++|+++++.++|++++++++++.+...... ..++ .++..++++.++++.+.+ -+...+..++.++|
T Consensus 194 ~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~l 273 (361)
T cd06452 194 FIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKERVKRWDEEVEKARWF 273 (361)
T ss_pred EEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446679998666899999999988887553211 1111 122344555566654422 12223333445778
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
.+.|++
T Consensus 274 ~~~L~~ 279 (361)
T cd06452 274 VAELEK 279 (361)
T ss_pred HHHHhc
Confidence 887765
No 220
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=1.4e-10 Score=110.48 Aligned_cols=151 Identities=9% Similarity=0.136 Sum_probs=97.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc--cccc----c
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY--WGFE----M 113 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~--~~~~----~ 113 (195)
++.|++.+... .+.+.++..|-++.+|. +++.+.+++|.++|++||++||+||+|.++-+.+... +.+. .
T Consensus 817 ~d~Le~al~~~---~~~~I~L~nPnhNPTG~-v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~ 892 (1082)
T PLN02672 817 AKTLASTLETV---KKPWVYISGPTINPTGL-LYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSR 892 (1082)
T ss_pred HHHHHHHhccC---CCCEEEEECcCCCCcCc-cCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHH
Confidence 46777777532 13346667775588895 7789999999999999999999999999887665421 1111 1
Q ss_pred c-CCCc--chh---hhccccC-CCCceEEEEecH-HHHHHhhccccccC-CCchHHHHHHHHHHHHh----h-c-chhHH
Q psy13322 114 H-GVSP--DIV---TMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNT-FGGNPVGCVIASTVLDV----I-K-DEELQ 178 (195)
Q Consensus 114 ~-~~~p--di~---~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t-~~~~p~~~~aa~aal~~----~-~-~~~~~ 178 (195)
+ ...+ .++ +|||.++ +||++||+++++ ++++.+........ +..+..++.+++++++. . + -.+.+
T Consensus 893 ~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r 972 (1082)
T PLN02672 893 LKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQK 972 (1082)
T ss_pred hccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 1 1112 222 6799999 899999999965 48888765421111 22234444444444421 1 1 13456
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
+.++++++++.+.|++
T Consensus 973 ~~Lk~rRd~L~e~L~~ 988 (1082)
T PLN02672 973 KILKSRAERLKETLEA 988 (1082)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6688899999888864
No 221
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.20 E-value=1.2e-10 Score=98.99 Aligned_cols=130 Identities=15% Similarity=0.215 Sum_probs=88.1
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CCCce
Q psy13322 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NGFPM 133 (195)
Q Consensus 58 avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G~~~ 133 (195)
+|++-..++.+|.+.+ .+.+++|.+.+ +++++|+||+|..|+ +...... ....+. +-+|||.++ .|+++
T Consensus 147 ~v~~~~P~NPtG~~~~-~~~~~~l~~~~--~~~~livDe~y~~~~--~~~~~~~--~~~~~~~i~~~S~SK~~~~~GlR~ 219 (353)
T PRK05387 147 GIIFPNPNAPTGIALP-LAEIERILAAN--PDSVVVIDEAYVDFG--GESAIPL--IDRYPNLLVVQTFSKSRSLAGLRV 219 (353)
T ss_pred EEEEeCCCCCCCCCCC-HHHHHHHHHhC--CCcEEEEeCcccccC--CcchHHH--HhhCCCEEEEEehhHhhcchhhhc
Confidence 3455455788897655 45555555433 299999999998764 2211111 111222 236799999 89999
Q ss_pred EEEEecHHHHHHhhccccc-cCCCchHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhhc
Q psy13322 134 GAVVTTTEIAQVLTKAAHF-NTFGGNPVGCVIASTVLDVIK-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 134 g~v~~~~~i~~~l~~~~~~-~t~~~~p~~~~aa~aal~~~~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
||+++++++++.+...... .+++.+++++.++.++|+..+ -++.+++++++++++.+.|++
T Consensus 220 G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 282 (353)
T PRK05387 220 GFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEETRAKVIATRERLVEELEA 282 (353)
T ss_pred eeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888765422 345678888888888886322 245677888889999888865
No 222
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.20 E-value=4.3e-10 Score=97.98 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++++|++.+.+. ++.+|++ .+.. |...+ +++|.++|++||+++|+||+|. +|..+.+... ...+ .
T Consensus 153 d~~~l~~~i~~~----~~k~v~~~~~~~---~~~~~----~~~I~~la~~~~~~livD~a~~-~g~~~~g~~~-~~~~-~ 218 (416)
T PRK00011 153 DYDEVEKLALEH----KPKLIIAGASAY---SRPID----FKRFREIADEVGAYLMVDMAHI-AGLVAAGVHP-SPVP-H 218 (416)
T ss_pred CHHHHHHHHHhc----CCCEEEECCCcC---CCccC----HHHHHHHHHHcCCEEEEECcch-hcccccCccC-CCCC-C
Confidence 467888888643 3335555 4443 43333 8999999999999999999986 3333221111 1112 3
Q ss_pred cchh--hhccccCCCCceEEEEec-HHHHHHhhccccccCCCc-hHHHHHHHHHHH-Hhhcc--hhHHHHHHHHHHHHHH
Q psy13322 118 PDIV--TMAKGIANGFPMGAVVTT-TEIAQVLTKAAHFNTFGG-NPVGCVIASTVL-DVIKD--EELQYNCKQVSAQIIG 190 (195)
Q Consensus 118 pdi~--~~sK~l~~G~~~g~v~~~-~~i~~~l~~~~~~~t~~~-~p~~~~aa~aal-~~~~~--~~~~~~l~~~~~~l~~ 190 (195)
.|++ +++|++ +|+++|+++++ +++.+.+.......+++. ....+++...++ +.+++ ++..++++++++++++
T Consensus 219 ~di~~~S~~K~l-~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 297 (416)
T PRK00011 219 ADVVTTTTHKTL-RGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAE 297 (416)
T ss_pred CcEEEecCCcCC-CCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4655 557998 46788999996 688887765443333322 233344433343 43332 5678889999999999
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 298 ~L~~ 301 (416)
T PRK00011 298 ALAE 301 (416)
T ss_pred HHHh
Confidence 9875
No 223
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.18 E-value=6.7e-10 Score=94.49 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.+.++ ++++|++..+.+.+|.+.+ +++|.++|++||+++++|++|+ +|.. ......+ ..|
T Consensus 113 ~~~l~~~i~~~----~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g~~---~~~~~~~--~~d 178 (356)
T cd06451 113 PEEIAEALEQH----DIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LGGE---PFRMDEW--GVD 178 (356)
T ss_pred HHHHHHHHhcc----CCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-ccCc---ccccccc--Ccc
Confidence 67788877642 4557777677778998776 8899999999999999999987 5422 1122222 346
Q ss_pred hhhh--ccccCCCCceEEEEecHHHHHHhhc--cc--c---------------ccCCCchHHHHHHHHHHHHhhcc---h
Q psy13322 120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTK--AA--H---------------FNTFGGNPVGCVIASTVLDVIKD---E 175 (195)
Q Consensus 120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~--~~--~---------------~~t~~~~p~~~~aa~aal~~~~~---~ 175 (195)
+++. +|.++++..+|+++.++++++.+.. .. . ..+.+.++..++++.++++.+.. +
T Consensus 179 ~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~ 258 (356)
T cd06451 179 VAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLE 258 (356)
T ss_pred EEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHH
Confidence 5544 5999965458999999988877653 11 0 11223456667777888887643 4
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy13322 176 ELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 176 ~~~~~l~~~~~~l~~~L~~ 194 (195)
.+.++.+++.+++.+.|++
T Consensus 259 ~~~~~~~~~~~~l~~~L~~ 277 (356)
T cd06451 259 NRWARHRRLAKALREGLEA 277 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677888888999888864
No 224
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.17 E-value=4.7e-10 Score=97.20 Aligned_cols=138 Identities=15% Similarity=0.123 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. +++++|++..+.+.+|.+.+ +++|.++|+++|+++|+|++|+ +|..- .... .+..|
T Consensus 150 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~---~~~~--~~~~d 214 (401)
T PRK10874 150 VDLLPELIT-----PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP---ADVQ--ALDID 214 (401)
T ss_pred HHHHHHhcC-----cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc---CCch--hcCCC
Confidence 577777664 25667888888899998887 8999999999999999999997 43221 1112 23467
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD- 174 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~- 174 (195)
+.++| |.+| .| +|++.+++++.+.+.....+ +.. +.|..++++..++++.+.+
T Consensus 215 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~ 292 (401)
T PRK10874 215 FYAFSGHKLYGPTG--IGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADI 292 (401)
T ss_pred EEEEecccccCCCc--cEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHh
Confidence 76665 9777 45 58888999887766432100 011 2344577777777776643
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
++..++.++.++++.+.|++
T Consensus 293 g~~~~~~~~~~l~~~l~~~l~~ 314 (401)
T PRK10874 293 DINQAESWSRSLATLAEDALAK 314 (401)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888865
No 225
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.17 E-value=2.2e-10 Score=97.35 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=85.8
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch---hhhccccC-CCCc
Q psy13322 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI---VTMAKGIA-NGFP 132 (195)
Q Consensus 57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi---~~~sK~l~-~G~~ 132 (195)
.++++-..++.+|.... . ++|.+++ ++++++|+||+|..|. +...... ....+++ -+|||.++ .|+|
T Consensus 142 ~~v~~~~P~NPtG~~~~-~---~~l~~i~-~~~~~ii~De~y~~~~--~~~~~~~--~~~~~~vi~l~S~SK~~~l~GlR 212 (337)
T PRK03967 142 SAVFICSPNNPTGNLQP-E---EEILKVL-ETGKPVVLDEAYAEFS--GKSLIGL--IDEYPNLILLRTFSKAFGLAGIR 212 (337)
T ss_pred CEEEEeCCCCCCCCCCC-H---HHHHHHH-hcCCEEEEECchhhhc--ccchHHH--HhhCCCEEEEecchHhhcchhhh
Confidence 34555555788997654 4 4455566 4799999999999873 2211111 1222333 37799999 9999
Q ss_pred eEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 133 MGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 133 ~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+||+++++++++.+.... ..++.+.+++.++.++|+..+. .+.+..+.++++.+.+.|++
T Consensus 213 iG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~ 273 (337)
T PRK03967 213 AGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDHYDLIEERIDYIIKERERVRRELGE 273 (337)
T ss_pred heeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999988887643 2345678899998888864322 33445666777778877754
No 226
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.16 E-value=8.3e-10 Score=97.85 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-C-C
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G-V 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~-~ 116 (195)
+.+.+++++.+.. . .|++-...+ .|...+ +++|+++|++||+++++|++|+ +|..|.+.. ...+ . -
T Consensus 208 D~d~l~~~~~~~~----p-lvii~g~S~-~~~~~d----l~~i~eia~~~gA~L~VD~AH~-~Gligg~~~-~~~~~~~~ 275 (493)
T PRK13580 208 DYDEIAALAREFK----P-LILVAGYSA-YPRRVN----FAKLREIADEVGAVLMVDMAHF-AGLVAGKVF-TGDEDPVP 275 (493)
T ss_pred CHHHHHHHHhhcC----C-EEEEeCccc-cCCCcC----HHHHHHHHHHcCCEEEEECchh-hceeccccc-hhhcCCCC
Confidence 3688888887542 2 233334333 344555 9999999999999999999998 665552121 1111 1 1
Q ss_pred Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCCC--chHHHHHHHHHHHHhhc-c--hhHHHHHHHHHHHHH
Q psy13322 117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFG--GNPVGCVIASTVLDVIK-D--EELQYNCKQVSAQII 189 (195)
Q Consensus 117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~--~~p~~~~aa~aal~~~~-~--~~~~~~l~~~~~~l~ 189 (195)
..|++ |++|+|.|. ..|++++++++.+.+.... .+.++ .+| .++|+..++..+. . .+.++++.+|.++|.
T Consensus 276 ~~D~vtgT~hKaL~GP-~GG~I~~~~~l~~~L~~a~-P~i~gg~l~p-~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La 352 (493)
T PRK13580 276 HADIVTTTTHKTLRGP-RGGLVLAKKEYADAVDKGC-PLVLGGPLPH-VMAAKAVALAEARTPEFQKYAQQVVDNARALA 352 (493)
T ss_pred CCcEEEeCChhhccCC-CeEEEEecHHHHHHHhhCC-CcccCCCccH-HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 45655 557999531 2588999999988885332 33333 234 4444444555543 2 357899999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 353 ~~L~~ 357 (493)
T PRK13580 353 EGFLK 357 (493)
T ss_pred HHHHh
Confidence 98865
No 227
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.16 E-value=5.4e-10 Score=96.74 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. .++++|++..+.+.+|.+.+ +++|.++|++||+++++|++|+ +|.. ........+|
T Consensus 147 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-----~~~~~~~~~d 211 (398)
T TIGR03392 147 IRQLPELLT-----PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-----PPDVQALDID 211 (398)
T ss_pred HHHHHHHhc-----cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-----CCChhhcCCC
Confidence 567777664 25667888888889998877 8999999999999999999997 3321 1111123468
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc------------------cCC---CchHHHHHHHHHHHHhhcc-
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF------------------NTF---GGNPVGCVIASTVLDVIKD- 174 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~------------------~t~---~~~p~~~~aa~aal~~~~~- 174 (195)
+.++| |.+| .| +|++++++++.+.+.....+ ..| ..|..++++..++++.+.+
T Consensus 212 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~ 289 (398)
T TIGR03392 212 FYAFSGHKLYGPTG--IGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDI 289 (398)
T ss_pred EEEEecccccCCCc--eEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHh
Confidence 88888 9777 45 79999999887766432100 011 2344577777777877643
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
++..++..+..+++.+.|++
T Consensus 290 g~~~i~~~~~~l~~~l~~~l~~ 311 (398)
T TIGR03392 290 DIAAAEAWSVSLADLAEERLAQ 311 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788888888888764
No 228
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.16 E-value=6.7e-10 Score=96.28 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------cCCEEEEeccccCccccCCCcccccc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS------NNGLFISDEVQTGFGRTGDNYWGFEM 113 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~------~~~llI~DEv~~g~gr~G~~~~~~~~ 113 (195)
+++|++.+. +++++|++....+..|. ..+.+.+++|.++|++ ||+++|.||+|..+.+.|......
T Consensus 158 ~~~l~~~~~-----~~~~~v~~~~p~NPtG~-~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-- 229 (394)
T PRK06836 158 LDALEAAIT-----PKTKAVIINSPNNPTGV-VYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYI-- 229 (394)
T ss_pred HHHHHhhcC-----cCceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCCh--
Confidence 577777774 24567777777777885 5567889999999999 899999999999885544311111
Q ss_pred cCCCcchh---hhccccC-CCCceEEEEecHHHHHH---hhc---ccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHH
Q psy13322 114 HGVSPDIV---TMAKGIA-NGFPMGAVVTTTEIAQV---LTK---AAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182 (195)
Q Consensus 114 ~~~~pdi~---~~sK~l~-~G~~~g~v~~~~~i~~~---l~~---~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~ 182 (195)
....++++ +|||.++ .|+++||+++++++.+. ... ... ....+.+++.+.++...++. ....+.++
T Consensus 230 ~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~ 306 (394)
T PRK06836 230 FKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA---TVDVSIYK 306 (394)
T ss_pred HHccCcEEEEecchhhccCcceeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC---hHHHHHHH
Confidence 11122333 6789999 89999999999876432 111 111 11234566777777666643 22356677
Q ss_pred HHHHHHHHHhhc
Q psy13322 183 QVSAQIIGYLRV 194 (195)
Q Consensus 183 ~~~~~l~~~L~~ 194 (195)
++++.+.+.|++
T Consensus 307 ~~r~~l~~~L~~ 318 (394)
T PRK06836 307 RNRDLLYDGLTE 318 (394)
T ss_pred HHHHHHHHHHHh
Confidence 788888877754
No 229
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.16 E-value=4.1e-10 Score=98.22 Aligned_cols=136 Identities=16% Similarity=0.141 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++|.+.++.|.+.. +++|.++|+++|+++|+||+|+ .+.... +. ..| .|
T Consensus 145 ~~~l~~ai~-----~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~---~~-~~g--aD 208 (403)
T PRK07810 145 LSQWEEALS-----VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA-TPLLQR---GL-PLG--AD 208 (403)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCC-ccccCC---hh-hcC--Cc
Confidence 566777665 25678999999999998886 9999999999999999999987 222221 11 123 47
Q ss_pred hhhh--ccccCC-CCce-EEEEecHHHHH-HhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTM--AKGIAN-GFPM-GAVVTTTEIAQ-VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~--sK~l~~-G~~~-g~v~~~~~i~~-~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++++ +|.+++ |..+ |+++++++... .+...........+|+.++.++..|+.+. ..+++-.++...+.+.|+
T Consensus 209 ivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~--~R~~~~~~~a~~~a~~L~ 285 (403)
T PRK07810 209 VVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA--LRVRHSNASALRIAEFLE 285 (403)
T ss_pred EEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHh
Confidence 6655 599984 7665 77888876544 34322222233568888888888877663 344555555555555554
No 230
>PRK08354 putative aminotransferase; Provisional
Probab=99.15 E-value=8.9e-10 Score=92.62 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.|++.+++ .+ ..|+..| .+.+|. ..+.+.+++|.++|++||+++|+||+|.+|...+. . .. ....--
T Consensus 108 ~~~l~~~~~~----~~-~vi~~~P-~NPTG~-~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~-~--~~-~~~vi~ 176 (311)
T PRK08354 108 PEKLEELVER----NS-VVFFCNP-NNPDGK-FYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPE-S--PE-GENIIK 176 (311)
T ss_pred HHHHHHhhcC----CC-EEEEecC-CCCCCC-ccCHHHHHHHHHHhhhcCcEEEEeCcchhcccccc-c--cC-CCcEEE
Confidence 3556555441 13 3555556 678896 66788999999999999999999999998855432 1 11 111111
Q ss_pred hhhhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHH
Q psy13322 120 IVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170 (195)
Q Consensus 120 i~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~ 170 (195)
+-+|||+++ .|+|+||+++ +.+.+..... .+..++.+++++.+.++
T Consensus 177 ~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 223 (311)
T PRK08354 177 LRTFTKSYGLPGIRVGYVKG---FEEAFRSVRM--PWSIGSTGYAFLEFLIE 223 (311)
T ss_pred EeccHhhcCCccceeeeeee---hHHHHHHcCC--CccCCHHHHHHHHHHHH
Confidence 337799999 9999999998 4444544322 23334555555555544
No 231
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.15 E-value=1.3e-09 Score=93.10 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+.+. .++..|.+--+.+.+|.+.+ +++|.++|++||+++|+|.+|+ +|... .... ...+|
T Consensus 117 ~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~--~~~~D 183 (363)
T TIGR02326 117 VVEVEAILAAD---PAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIA--ELHID 183 (363)
T ss_pred HHHHHHHHhhC---CCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchh--hcCcc
Confidence 67888888754 23444555555667888877 8999999999999999999987 54321 1222 23467
Q ss_pred hhhh--ccccCCCCceEEEEecHHHHHHhhccc------------------cccCCCchHHHHHHHHHHHHhhcc----h
Q psy13322 120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA------------------HFNTFGGNPVGCVIASTVLDVIKD----E 175 (195)
Q Consensus 120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~------------------~~~t~~~~p~~~~aa~aal~~~~~----~ 175 (195)
+++. +|+++++..+|+++++++..+.+.... ....|..++.++.+..++++.+.+ +
T Consensus 184 ~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~ 263 (363)
T TIGR02326 184 YLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVA 263 (363)
T ss_pred EEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHH
Confidence 6644 599974434799999988776543210 012345577788888888877633 3
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy13322 176 ELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 176 ~~~~~l~~~~~~l~~~L~~ 194 (195)
+..++++++.+++++.|++
T Consensus 264 ~~~~~~~~~~~~l~~~L~~ 282 (363)
T TIGR02326 264 ARHQRYQQNQKTLVAGMRA 282 (363)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998864
No 232
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.15 E-value=6.7e-10 Score=95.91 Aligned_cols=138 Identities=13% Similarity=0.090 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++.+|+++.+.+++|.+.+ +++|.++|++||+++|+||+|. .|. + ..... ...+|
T Consensus 146 ~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~-~--~~~~~--~~~~d 210 (397)
T TIGR01976 146 PDDLASLLS-----PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-APH-G--LIDVQ--ATGAD 210 (397)
T ss_pred HHHHHHhcC-----CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-ccc-c--CCCHH--HcCCC
Confidence 566776664 35678999999999999876 9999999999999999999986 321 1 11122 23457
Q ss_pred hhhh--ccccCCCCceEEEEecHHHHHHhhccccccCC----------CchHHHHHHHHHHHHhhcc-------------
Q psy13322 120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAAHFNTF----------GGNPVGCVIASTVLDVIKD------------- 174 (195)
Q Consensus 120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~----------~~~p~~~~aa~aal~~~~~------------- 174 (195)
++++ +|.+| +++|++++++++++.+........+ ..+...+++..++++.+.+
T Consensus 211 ~~~~s~~K~~g--~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~ 288 (397)
T TIGR01976 211 FLTCSAYKFFG--PHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERL 288 (397)
T ss_pred EEEEechhhcC--CceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhh
Confidence 6644 69874 5689999999988777643211111 1234455556666665532
Q ss_pred ----hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 ----EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ----~~~~~~l~~~~~~l~~~L~~ 194 (195)
+...++..+..+++++.|++
T Consensus 289 ~~~~~~~~~~~~~l~~~l~~~L~~ 312 (397)
T TIGR01976 289 VASFQAIDAYENRLAEYLLVGLSD 312 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22345566777788777764
No 233
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.15 E-value=7.3e-10 Score=95.87 Aligned_cols=135 Identities=13% Similarity=0.060 Sum_probs=92.1
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi 120 (195)
+.+++.+. .++++|++|.+.++.|.+.+ +++|.++|++||+++|+||+|+ .|.... .. ....|+
T Consensus 126 e~l~~~i~-----~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a-~g~~~~---pl---~~gaDi 189 (377)
T TIGR01324 126 EDIATLIQ-----PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA-AGLLFK---PL---EHGVDI 189 (377)
T ss_pred HHHHHhcC-----CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc-cccccC---cc---ccCceE
Confidence 45555543 36779999999998887776 9999999999999999999997 443332 11 234576
Q ss_pred hhh--ccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 121 VTM--AKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 121 ~~~--sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++. +|.++| +..+|+++++++..+.+...........+|..+...+..++.+. -.+++.+++...+.+.|+
T Consensus 190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~--~R~~~~~~~a~~la~~L~ 264 (377)
T TIGR01324 190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLG--VRLKQHQESSLAIAKWLS 264 (377)
T ss_pred EEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHH
Confidence 655 699984 35678888888877766543333344557777777766666542 234555666555655554
No 234
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.14 E-value=7.5e-10 Score=96.45 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++++++.+. +++++|++|.+.++.|.+.. +++|.++|++| |+++|+||+|+.. ..+. . . +..
T Consensus 139 ~e~l~~~i~-----~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~~~-~~~~-~--l---~~g 202 (400)
T PRK06234 139 LEEVRNALK-----ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFCTP-YIQR-P--L---QLG 202 (400)
T ss_pred HHHHHHHhc-----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCCch-hcCC-c--h---hhC
Confidence 567777665 25678999999999998777 99999999997 9999999998732 2222 1 1 223
Q ss_pred cchh--hhccccC-CCCc-eEEEEecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy13322 118 PDIV--TMAKGIA-NGFP-MGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGY 191 (195)
Q Consensus 118 pdi~--~~sK~l~-~G~~-~g~v~~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~ 191 (195)
.|++ +++|.++ .|++ +|++++++++++.++... ...+...+|+.++.++..|+.+. ..+++..++..++.+.
T Consensus 203 ~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl~--~r~~~~~~na~~~a~~ 280 (400)
T PRK06234 203 ADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTLQ--IRMEKHCKNAMKVAKF 280 (400)
T ss_pred CcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHH
Confidence 4655 4569998 4776 488999998888776432 22345567888877777776543 3455566677777766
Q ss_pred hh
Q psy13322 192 LR 193 (195)
Q Consensus 192 L~ 193 (195)
|+
T Consensus 281 L~ 282 (400)
T PRK06234 281 LE 282 (400)
T ss_pred HH
Confidence 65
No 235
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.14 E-value=8.7e-10 Score=94.38 Aligned_cols=139 Identities=13% Similarity=0.143 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++..+.++.|...+ +++|.++|++||++|++|++|+ +|... +... ...+|
T Consensus 129 ~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~--~~~~d 193 (373)
T cd06453 129 LEALEKLLT-----ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP---VDVQ--DLGCD 193 (373)
T ss_pred HHHHHHHhc-----CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee---eecc--ccCCC
Confidence 677887775 25678888888888998876 8999999999999999999987 33221 1111 34568
Q ss_pred hhhhc--cccCCCCceEEEEecHHHHHHhhccccc--------------------c-CCCchHHHHHHHHHHHHhhcc--
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF--------------------N-TFGGNPVGCVIASTVLDVIKD-- 174 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~--------------------~-t~~~~p~~~~aa~aal~~~~~-- 174 (195)
++++| |.+++ ..+|++++++++.+.+.....+ + ..+.+..++.+..++++.+.+
T Consensus 194 ~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g 272 (373)
T cd06453 194 FLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIG 272 (373)
T ss_pred EEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 88887 99985 4478999999887766543110 0 012344556666667776643
Q ss_pred -hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 -EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 -~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.+.++.+++.+++.+.|++
T Consensus 273 ~~~~~~~~~~~~~~l~~~l~~ 293 (373)
T cd06453 273 MEAIAAHEHELTAYALERLSE 293 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888765
No 236
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.13 E-value=1.7e-09 Score=94.11 Aligned_cols=142 Identities=13% Similarity=0.098 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.++... +++++|+++.+.+++|.+.+ +++|.++|++||+++++|++|+ +|... +.... ...|
T Consensus 158 ~~~l~~~~~~~~--~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~~---id~~~--~gvD 225 (406)
T TIGR01814 158 LEDILDTIEKNG--DDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNVP---LDLHD--WGVD 225 (406)
T ss_pred HHHHHHHHHhcC--CCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCcc---ccccc--CCCC
Confidence 567777776442 47889999999999999998 9999999999999999999998 54321 12232 3456
Q ss_pred hhhhc--cccCCCCceEEEEecHHHHHHhhcccc---c----------cC---------CC-chHHHHHHHHHHHHhhcc
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAH---F----------NT---------FG-GNPVGCVIASTVLDVIKD 174 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~---~----------~t---------~~-~~p~~~~aa~aal~~~~~ 174 (195)
++++| |.|++|. .+++...++..+.+..... + .+ .+ .|..++++..++|+.+.+
T Consensus 226 ~~~~s~hK~l~g~p-G~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~ 304 (406)
T TIGR01814 226 FACWCTYKYLNAGP-GAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQ 304 (406)
T ss_pred EEEEcCccccCCCC-CeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHh
Confidence 66554 9997653 3444443332222322100 0 00 12 355677778889988744
Q ss_pred ---hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 ---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ---~~~~~~l~~~~~~l~~~L~~ 194 (195)
+...++.+++.+++++.|++
T Consensus 305 ~g~~~i~~~~~~l~~~l~~~l~~ 327 (406)
T TIGR01814 305 AGMEALRKKSLLLTDYLEELIKA 327 (406)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh
Confidence 56778888888898888754
No 237
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.13 E-value=1.3e-09 Score=94.26 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCccccCCCcccccccCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ-TGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~-~g~gr~G~~~~~~~~~~~ 116 (195)
+++++++.+.+. +..+|+ ..+.. |.... +++|.++|++||+++|+||+| .|+...|. .. . ...
T Consensus 149 d~~~l~~~i~~~----~~~~v~~~~~~~---~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~-~~-~-~~~- 213 (402)
T cd00378 149 DYDALEKMALEF----KPKLIVAGASAY---PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGV-FP-N-PLP- 213 (402)
T ss_pred CHHHHHHHHHhC----CCCEEEecCccc---CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhccc-CC-C-ccc-
Confidence 367888887643 223444 45544 33333 889999999999999999997 44422332 11 1 111
Q ss_pred Ccchh--hhccccCCCCceEEEEecH-HHHHHhhccccccCCCc-hHHHHHHHHHHHHhh-c-c-hhHHHHHHHHHHHHH
Q psy13322 117 SPDIV--TMAKGIANGFPMGAVVTTT-EIAQVLTKAAHFNTFGG-NPVGCVIASTVLDVI-K-D-EELQYNCKQVSAQII 189 (195)
Q Consensus 117 ~pdi~--~~sK~l~~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~-~-~-~~~~~~l~~~~~~l~ 189 (195)
..|++ +++|++ +|+++|++++++ ++++.+......+.++. ++..++++..++... . . ++.+++++++.+++.
T Consensus 214 ~~dv~~~s~sK~l-~G~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~ 292 (402)
T cd00378 214 GADVVTTTTHKTL-RGPRGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALA 292 (402)
T ss_pred CCcEEEeccccCC-CCCCceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34654 567999 578899999987 88888765433233332 233333434444433 2 1 567788999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 293 ~~L~~ 297 (402)
T cd00378 293 EALKE 297 (402)
T ss_pred HHHHh
Confidence 98865
No 238
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.13 E-value=6.4e-10 Score=96.44 Aligned_cols=137 Identities=15% Similarity=0.058 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. ++.++|++|.+.++.|.+.+ +++|.++|+++|+++|+||+|+ .+..+. .. ..| .|
T Consensus 136 ~~~l~~~i~-----~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a-~~~~~~---pl-~~g--~D 199 (386)
T PRK06767 136 EADIENKIR-----PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFC-SPYLQR---PL-ELG--CD 199 (386)
T ss_pred HHHHHHhhC-----cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---ch-hcC--Cc
Confidence 456666554 25678999999999998777 8999999999999999999986 222222 11 123 36
Q ss_pred hh--hhccccCC-CCc-eEEEEecHHHHHHhhccccc-cCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAHF-NTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~~-~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +++|.+++ |.+ +|+++++++.++.+...... .....+|+.+++++..|+.+ +..+++.+++.+++.+.|++
T Consensus 200 iv~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl--~~r~~~~~~~a~~la~~L~~ 277 (386)
T PRK06767 200 AVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTL--AVRMDRHCDNAEKIVSFLKN 277 (386)
T ss_pred EEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHHc
Confidence 55 45699984 677 48888988866654332211 11123677666665555544 34567778888888888875
No 239
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.13 E-value=9.2e-10 Score=95.65 Aligned_cols=137 Identities=13% Similarity=0.071 Sum_probs=94.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|.+.++.|.+.+ +++|.++|+++|+++|+||++. .+..+. . .+...|
T Consensus 134 ~e~l~~~i~-----~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a-~~~~~~-~-----~~~g~D 197 (391)
T TIGR01328 134 PEEVKAHIK-----DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFA-TPMLTN-P-----VALGVD 197 (391)
T ss_pred HHHHHHhhc-----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc-hhccCC-c-----hhcCCC
Confidence 566666654 35779999999999998776 9999999999999999999987 333332 1 123346
Q ss_pred hh--hhccccCC-CCc-eEEEEecHHHHHHhhcccc--ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAH--FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~--~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ +++|.+++ |.+ +|++++++++++.++.... ......+|+.++.++..|+.+ +..+++..++.+++.+.|+
T Consensus 198 ivv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl--~~r~~~~~~na~~la~~L~ 275 (391)
T TIGR01328 198 VVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL--NIRMKRHSENAMKVAEYLK 275 (391)
T ss_pred EEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHH
Confidence 55 45699984 655 5778888888877764321 122345677777666666544 3346667777777777775
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 276 ~ 276 (391)
T TIGR01328 276 S 276 (391)
T ss_pred h
Confidence 4
No 240
>PRK02948 cysteine desulfurase; Provisional
Probab=99.12 E-value=8.5e-10 Score=94.91 Aligned_cols=138 Identities=20% Similarity=0.151 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .+...|+++.+.+++|.+.+ +++|.++|+++|+++++|++|+ +|.... ....+ ..|
T Consensus 128 ~~~l~~~l~-----~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~~~---~~~~~--~~d 192 (381)
T PRK02948 128 LVDLERAIT-----PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKLPI---DVFEM--GID 192 (381)
T ss_pred HHHHHHhcC-----CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccccc---CcccC--CCC
Confidence 566776664 25568999999999999887 8899999999999999999887 654321 12223 345
Q ss_pred hh--hhccccC-CCCceEEEEecHHHH-HHhhcc---ccc-cCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322 120 IV--TMAKGIA-NGFPMGAVVTTTEIA-QVLTKA---AHF-NTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII 189 (195)
Q Consensus 120 i~--~~sK~l~-~G~~~g~v~~~~~i~-~~l~~~---~~~-~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~ 189 (195)
++ +++|.+| .| +|++++++++. ..+... ... ..++.|+.+++++.++++.+.+ ++..+++++++++|+
T Consensus 193 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 270 (381)
T PRK02948 193 SLSVSAHKIYGPKG--VGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRFKELRSYFL 270 (381)
T ss_pred EEEecHHhcCCCCc--EEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 5579887 45 68887776541 111100 011 1234678888888999987532 567889999999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 271 ~~L~~ 275 (381)
T PRK02948 271 EQIQT 275 (381)
T ss_pred HHHhc
Confidence 99875
No 241
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.11 E-value=7.5e-10 Score=96.40 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=91.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++|.+.++.|.+.+ +++|.++|+++|+++|+||+|+. +.... . . ....|
T Consensus 140 ~e~l~~ai~-----~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a~-~~~~~-~--~---~~gaD 203 (398)
T PRK07504 140 LDNWEKAVR-----PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFAT-PLFQK-P--L---ELGAH 203 (398)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCccc-cccCC-c--h---hhCCC
Confidence 466666654 36779999999999998887 99999999999999999999972 22221 1 1 12346
Q ss_pred hhhh--ccccC-CCCceE-EEEecHHHHH-HhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTM--AKGIA-NGFPMG-AVVTTTEIAQ-VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~--sK~l~-~G~~~g-~v~~~~~i~~-~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++++ +|.++ .|+++| +++++++++. .+...........+|+.++.++..|+.+. ..+++..++...+.+.|+
T Consensus 204 ivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~--~R~~~~~~na~~la~~L~ 280 (398)
T PRK07504 204 IVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLP--VRVRQQTESAAAIADFLA 280 (398)
T ss_pred EEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHH
Confidence 6654 69998 578775 6667766553 33322222233467888888888887763 344555566666666665
No 242
>KOG0259|consensus
Probab=99.11 E-value=1.7e-09 Score=91.70 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc-CC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-GV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~-~~ 116 (195)
.+++.+|.++.+ ..+|.||+.|-.- -| .+++.+-|++|+++|+|+++++|+||||..+-+.++.|.+...+ .+
T Consensus 187 IDL~~veal~DE----NT~AivviNP~NP-cG-nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssi 260 (447)
T KOG0259|consen 187 IDLDGVEALADE----NTVAIVVINPNNP-CG-NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSI 260 (447)
T ss_pred echHHHHHhhcc----CeeEEEEeCCCCC-Cc-ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcccc
Confidence 568888888774 3788888888543 34 47889999999999999999999999999886666644444333 34
Q ss_pred Ccchh--hhccccC-CCCceEEEEecHH--HH------HHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHHH
Q psy13322 117 SPDIV--TMAKGIA-NGFPMGAVVTTTE--IA------QVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNCK 182 (195)
Q Consensus 117 ~pdi~--~~sK~l~-~G~~~g~v~~~~~--i~------~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~ 182 (195)
.|-|. .+||.+= .|||+||++..+. +. +.+.+. ...+.+.+.+-|+|.=.-|+.-.+ +....-++
T Consensus 261 VPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~-~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk 339 (447)
T KOG0259|consen 261 VPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNF-LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLK 339 (447)
T ss_pred CceEeecccccccccCCceeeeEEEecccccccchHHHHHHHHH-HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHH
Confidence 55433 4479887 8999999988642 21 222222 234456667777776666665433 45667789
Q ss_pred HHHHHHHHHhhcC
Q psy13322 183 QVSAQIIGYLRVV 195 (195)
Q Consensus 183 ~~~~~l~~~L~~l 195 (195)
.+.+...+.|+.+
T Consensus 340 ~na~l~y~~Lk~I 352 (447)
T KOG0259|consen 340 SNADLCYSRLKDI 352 (447)
T ss_pred hhHHHHHHHHhcC
Confidence 9999999988764
No 243
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.10 E-value=1.4e-09 Score=94.72 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.|. .++++|++|.+.++.|.+.+ +++|.++|++||+++|+|++|+.. .... .. ....|
T Consensus 139 ~e~l~~~i~-----~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~~-~~~~---~l---~~~~D 202 (398)
T PRK08249 139 HEQIEAEIA-----KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFATP-INQN---PL---ALGAD 202 (398)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCcc-ccCC---ch---hhCCC
Confidence 566777664 25678999999999998887 999999999999999999998732 2221 11 22345
Q ss_pred hh--hhccccCC-CCc-eEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV--TMAKGIAN-GFP-MGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~--~~sK~l~~-G~~-~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +++|.+++ |-. .|++++++++++.+...........+|+.++.++..++.+. ..+++..++.+.+.+.|++
T Consensus 203 ivv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~~ 279 (398)
T PRK08249 203 LVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLK--LRVRQQQESAMALAKYLQT 279 (398)
T ss_pred EEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHH--HHHHHHHHHHHHHHHHHHc
Confidence 54 55799984 444 46777888888877654433445667888888777777663 3456667777777777753
No 244
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.10 E-value=6.8e-10 Score=94.60 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++..+.+++|.+.+ +++|.++|++||+++++|++|+ +|..- .... ....|
T Consensus 128 ~~~l~~~l~-----~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~---~~~~--~~~~D 192 (353)
T TIGR03235 128 VDELADAIR-----PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT---VDLS--ADRID 192 (353)
T ss_pred HHHHHHhCC-----CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc---cccc--ccCCC
Confidence 567777664 25678989999999999887 8999999999999999999998 54321 1122 23468
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHH--hhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHH
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQV--LTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVS 185 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~--l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~ 185 (195)
++++| |.++ .| +|+++++++.... +..... ......++...++..++++.+.+ ++..++++++.
T Consensus 193 ~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~ 270 (353)
T TIGR03235 193 LISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARRNAQAWEVKLRAMR 270 (353)
T ss_pred EEEeehhhcCCCCc--eEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87776 9765 34 7888888764221 111101 11223456677777788887643 56778899999
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
+++++.|++
T Consensus 271 ~~l~~~l~~ 279 (353)
T TIGR03235 271 NQLRDALQT 279 (353)
T ss_pred HHHHHHhcc
Confidence 999998864
No 245
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.10 E-value=1.9e-09 Score=92.06 Aligned_cols=145 Identities=12% Similarity=0.141 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCc--ccccccC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNY--WGFEMHG 115 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~--~~~~~~~ 115 (195)
++++|++.|.+ +.++|++-...+++|.+.+ +++|.++|++||+++++||+|+++.. .+... +.+..
T Consensus 140 d~~~l~~~i~~-----~~~~vi~~~~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~-- 208 (371)
T PRK13520 140 DVKAVEDLIDD-----NTIGIVGIAGTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSL-- 208 (371)
T ss_pred CHHHHHHHHhh-----CCEEEEEEcCCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccC--
Confidence 36888888863 3334443333467898877 99999999999999999999986531 11111 11111
Q ss_pred CCcchhhhc-cccC-CCCceEEEEe-cHHHHHHhhccc-ccc-------CCCchHHHHHHHHHHHHhhcc---hhHHHHH
Q psy13322 116 VSPDIVTMA-KGIA-NGFPMGAVVT-TTEIAQVLTKAA-HFN-------TFGGNPVGCVIASTVLDVIKD---EELQYNC 181 (195)
Q Consensus 116 ~~pdi~~~s-K~l~-~G~~~g~v~~-~~~i~~~l~~~~-~~~-------t~~~~p~~~~aa~aal~~~~~---~~~~~~l 181 (195)
...|.+++| +.++ +|+|+|+++. ++++.+.+.... +.. ....++..++++.++|+.+.+ +++.++.
T Consensus 209 ~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~ 288 (371)
T PRK13520 209 PGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERC 288 (371)
T ss_pred CCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHH
Confidence 123544443 3354 5678887775 555766654211 100 001134567788888887644 3577889
Q ss_pred HHHHHHHHHHhhc
Q psy13322 182 KQVSAQIIGYLRV 194 (195)
Q Consensus 182 ~~~~~~l~~~L~~ 194 (195)
.+++++|.+.|++
T Consensus 289 ~~~~~~l~~~L~~ 301 (371)
T PRK13520 289 MENTRWLAEELKE 301 (371)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 246
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.09 E-value=1.2e-09 Score=96.03 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc--ccc-----CCCcccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF--GRT-----GDNYWGF 111 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~--gr~-----G~~~~~~ 111 (195)
++++|++.|.+... .++++|+++...+..|-.+.+.+.|++|.++|++||++||+|+++.-. .+. |....+.
T Consensus 137 D~e~Le~~I~~~~~-~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si 215 (431)
T cd00617 137 DVAKLEKLIDEVGA-ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSI 215 (431)
T ss_pred CHHHHHHHhCcccC-CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCH
Confidence 37889999875422 368888888665555346778899999999999999999999997521 011 1100011
Q ss_pred cccCCCcchhhhccccC-CCCc------eEEEEecH-HHHHHhhccc----cccCCCc-hHHHHHHHHHHHHhhcchhHH
Q psy13322 112 EMHGVSPDIVTMAKGIA-NGFP------MGAVVTTT-EIAQVLTKAA----HFNTFGG-NPVGCVIASTVLDVIKDEELQ 178 (195)
Q Consensus 112 ~~~~~~pdi~~~sK~l~-~G~~------~g~v~~~~-~i~~~l~~~~----~~~t~~~-~p~~~~aa~aal~~~~~~~~~ 178 (195)
. .+.-.+..+||++. +||+ +|++++++ ++++.+++.. ...++++ +...++|...+|+...+.+..
T Consensus 216 ~--ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~~~~l 293 (431)
T cd00617 216 A--EIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYL 293 (431)
T ss_pred H--HHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhcccHHHH
Confidence 0 11112334567776 6665 56888886 5888876532 1223343 344444443377654233334
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++..+++++|.+.|++
T Consensus 294 ~~~~~~r~~l~~~L~~ 309 (431)
T cd00617 294 RHRVEQVRYLGDRLDE 309 (431)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4434455888888875
No 247
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.09 E-value=7e-10 Score=96.39 Aligned_cols=138 Identities=14% Similarity=0.160 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. .++++|++..+.+.+|.+.+ +++|.++|++||+++++|++|+ +|... +...+..+|
T Consensus 132 ~~~l~~~l~-----~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~-----~~~~~~~~D 196 (402)
T TIGR02006 132 LEELKAAIR-----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP-----INVNELKVD 196 (402)
T ss_pred HHHHHHhcC-----CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCccccCCC
Confidence 566776664 25678999999999998877 9999999999999999999997 44321 222245678
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc------cC-CCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF------NT-FGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ 187 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~------~t-~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~ 187 (195)
++++| |.+| .| +|+++.+++....+.....+ .. ...+...+++..++++.+.+ +...++.+++.++
T Consensus 197 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~ 274 (402)
T TIGR02006 197 LMSISGHKIYGPKG--IGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAQDTAHVLALRDR 274 (402)
T ss_pred EEEEehhhhcCCCc--eEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99888 9776 24 78888776533322222111 11 12355566666688887643 4556788888888
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
+++.|++
T Consensus 275 l~~~l~~ 281 (402)
T TIGR02006 275 LLNGIKS 281 (402)
T ss_pred HHHHHhc
Confidence 8888864
No 248
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.09 E-value=2.5e-09 Score=92.91 Aligned_cols=138 Identities=14% Similarity=0.143 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++..+.+..|.+.+ +++|.++|+++|+++++|++|+ +|... .... ....|
T Consensus 154 ~~~l~~~i~-----~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~--~~~~D 218 (406)
T PRK09295 154 LETLPALFD-----ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQ--ALDCD 218 (406)
T ss_pred HHHHHHhcC-----CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCch--hcCCC
Confidence 566666664 25678888889899999887 8999999999999999999997 54321 1122 23567
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHHhhccccc----------------------cCCCchHHHHHHHHHHHHhhcc
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAHF----------------------NTFGGNPVGCVIASTVLDVIKD 174 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~~----------------------~t~~~~p~~~~aa~aal~~~~~ 174 (195)
++++| |.+| .| +|++++++++++.+.....+ .+-..|..++++..++++.+.+
T Consensus 219 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~ 296 (406)
T PRK09295 219 FYVFSGHKLYGPTG--IGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSA 296 (406)
T ss_pred EEEeehhhccCCCC--cEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 77775 9776 45 78999998887665321100 0013466788888899988754
Q ss_pred ---hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 ---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ---~~~~~~l~~~~~~l~~~L~~ 194 (195)
+...++.++..+++.+.|++
T Consensus 297 ~g~~~i~~~~~~l~~~l~~~l~~ 319 (406)
T PRK09295 297 LGLNNIAEYEQNLMHYALSQLES 319 (406)
T ss_pred hCHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888888999888865
No 249
>PRK10534 L-threonine aldolase; Provisional
Probab=99.09 E-value=6.4e-10 Score=93.95 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc---CCCcccccccC
Q psy13322 40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT---GDNYWGFEMHG 115 (195)
Q Consensus 40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~---G~~~~~~~~~~ 115 (195)
+++|++.+.+.. +..++.+|+++... .|.+. +.+.+++|.++|++|+++|++||+|. ++.. +. ......
T Consensus 113 ~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~~~~~~~~~---~~~~~~ 185 (333)
T PRK10534 113 LDKVAAKIKPDDIHFARTRLLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-FNAVVAYGC---ELKEIT 185 (333)
T ss_pred HHHHHHhhcccCcCcccceEEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-HHHHHHcCC---CHHHHH
Confidence 567777664310 00146678888644 47644 67889999999999999999999987 4321 22 111111
Q ss_pred CCcc--hhhhccccCCCCceE-EEEecHHHHHHhhccccccC--CCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q psy13322 116 VSPD--IVTMAKGIANGFPMG-AVVTTTEIAQVLTKAAHFNT--FGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIG 190 (195)
Q Consensus 116 ~~pd--i~~~sK~l~~G~~~g-~v~~~~~i~~~l~~~~~~~t--~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~ 190 (195)
-.+| +++|||+++. ++| ++++++++++.+........ +..+.++++++.++|+.. .+.+++.+++++++.+
T Consensus 186 ~~~~~~~~s~SK~~~~--~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~r~~l~~ 261 (333)
T PRK10534 186 QYCDSFTICLSKGLGT--PVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--VARLQEDHDNAAWLAE 261 (333)
T ss_pred hcCCEEEEEeEcCCCC--cccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHH
Confidence 1122 4578998873 356 68889999888865432222 223456677777777532 2334445566788888
Q ss_pred Hhhc
Q psy13322 191 YLRV 194 (195)
Q Consensus 191 ~L~~ 194 (195)
.|++
T Consensus 262 ~L~~ 265 (333)
T PRK10534 262 QLRE 265 (333)
T ss_pred HHHh
Confidence 8865
No 250
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.08 E-value=2.5e-09 Score=94.50 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++++|++++++..+ ++ |++ ++ ..|...+ +++|.++|+++|+++++|++|+ +|..+....... .. .
T Consensus 170 d~~~L~~~l~~~~~--~l--vi~~~s---~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~-~~-~ 235 (452)
T PTZ00094 170 DYDKLEELAKAFRP--KL--IIAGAS---AYPRDID----YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSP-FP-Y 235 (452)
T ss_pred CHHHHHHHHHHhCC--CE--EEEeCC---CCCCccC----HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCC-CC-C
Confidence 47889998875432 33 333 44 4555555 8899999999999999999998 666543221111 11 4
Q ss_pred cchhhhc--cccCCCCceEEEEecHHHHHHhhcc----ccccCC-CchHHHHHHHHHHHHhhcc---hhHHHHHHHHHHH
Q psy13322 118 PDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKA----AHFNTF-GGNPVGCVIASTVLDVIKD---EELQYNCKQVSAQ 187 (195)
Q Consensus 118 pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~----~~~~t~-~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~ 187 (195)
.|++++| |+|.|-. .|++.+++++.+.+... .+.... +.++..+++..++++.+.. ++..+++.++.++
T Consensus 236 ~D~l~~S~hK~l~GP~-Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~ 314 (452)
T PTZ00094 236 ADVVTTTTHKSLRGPR-SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKA 314 (452)
T ss_pred CcEEEcCCccCCCCCC-ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 6887775 9996422 36677766554433222 111111 4467788888899998843 4577899999999
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
|.+.|++
T Consensus 315 l~~~L~~ 321 (452)
T PTZ00094 315 LAAALEK 321 (452)
T ss_pred HHHHHHh
Confidence 9998864
No 251
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.08 E-value=3.7e-10 Score=96.47 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=90.0
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc---hhhhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD---IVTMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd---i~~~sK~l~-~G 130 (195)
++++|++....+.+|.+. +.+.+++|.+.|+ +++||+||+|..|..... .... ....+. +-+|||.++ .|
T Consensus 147 ~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s-~~~~--~~~~~~~iv~~S~SK~~~l~G 220 (354)
T PRK04635 147 GAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYS-VADL--LASYPNLVVLRTLSKAFALAG 220 (354)
T ss_pred CCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhccCcc-hHHH--HhhCCCEEEEechHHHhhhhH
Confidence 455777778888999765 5566777666654 499999999987742111 1111 111233 337899999 89
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--cc-hhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--KD-EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~~-~~~~~~l~~~~~~l~~~L~~ 194 (195)
+|+||+++++++++.+.... ..++.+...+.++.++|+.. +. .+..+.++++++++.+.|++
T Consensus 221 lRlG~~i~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 285 (354)
T PRK04635 221 ARCGFTLANEELIEILMRVI--APYPVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSM 285 (354)
T ss_pred HHHhhhhCCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988876532 23455666777778887532 11 34456788888888888875
No 252
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.08 E-value=1.3e-09 Score=94.66 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.+. .++++|++|.+.+..|.+.+ +++|.++|++||+++|+|++++.. .... .. ....|
T Consensus 136 ~~~l~~~i~-----~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~~~-~~~~---pl---~~g~D 199 (390)
T PRK08133 136 LDAWRAAVR-----PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFCTP-ALQQ---PL---KLGAD 199 (390)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCc
Confidence 466666664 36779999999888998876 899999999999999999998521 2111 11 11236
Q ss_pred hh--hhccccC-CCCce-EEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV--TMAKGIA-NGFPM-GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~--~~sK~l~-~G~~~-g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ +++|.++ .|+++ |++++++++++.+...........+|..+..++..++.+ ...+++..++...+.+.|++
T Consensus 200 ivv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl--~~R~~~~~~~a~~la~~L~~ 276 (390)
T PRK08133 200 VVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETL--SLRMEAHSANALALAEWLEA 276 (390)
T ss_pred EEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchH--HHHHHHHHHHHHHHHHHHHh
Confidence 55 4469998 57776 667777776665543332223344666666555555433 23345555666667666653
No 253
>PRK07908 hypothetical protein; Provisional
Probab=99.07 E-value=2.4e-09 Score=91.18 Aligned_cols=130 Identities=12% Similarity=0.130 Sum_probs=86.7
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh---hhccccC-CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV---TMAKGIA-NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~---~~sK~l~-~G 130 (195)
+++++++-...+.+|.+.+ .++|.++|+ ++.++|+||+|..+ ..|. ..+..... .++++ +|||.++ .|
T Consensus 139 ~~~~i~l~np~NPTG~~~~----~~~l~~l~~-~~~~iIvDe~y~~~-~~~~-~~~l~~~~-~~~~i~i~S~SK~~~l~G 210 (349)
T PRK07908 139 DADLVVIGNPTNPTSVLHP----AEQLLALRR-PGRILVVDEAFADA-VPGE-PESLAGDD-LPGVLVLRSLTKTWSLAG 210 (349)
T ss_pred CCCEEEEcCCCCCCCCCcC----HHHHHHHHh-cCCEEEEECcchhh-ccCC-cccccccc-CCCEEEEeecccccCCcc
Confidence 4556777666788998765 345667775 57889999999876 3343 22222122 12433 6799999 99
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI--K-DEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~--~-~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++||+++++++++.+...... +..+++.++++.+.++-. + -++++++++++++++.+.|++
T Consensus 211 lRiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 275 (349)
T PRK07908 211 LRVGYALGAPDVLARLTRGRAH--WPVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA 275 (349)
T ss_pred ceeeeeecCHHHHHHHHhcCCC--CCccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988888764332 344566666555555411 1 145678888889999888865
No 254
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.07 E-value=2.5e-09 Score=93.40 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.|++.++ .++++|++|...+..|.+.. +++|.++|++||+++|+||+|..-.. .... ....|
T Consensus 135 ~~~l~~~i~-----~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a~~~~----~~pl---~~gaD 198 (405)
T PRK08776 135 PRSLADALA-----QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFLSPAL----QKPL---EFGAD 198 (405)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCccccc----CCcc---cccCC
Confidence 466666664 25678999998888998755 99999999999999999999973111 1112 12346
Q ss_pred hhhh--ccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTM--AKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~--sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++ +|.+++ +...|++++ ++++.+.+...........+|+.+.+++..++.+ +..+++..+|...+.+.|++
T Consensus 199 ivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl--~~r~~~~~~na~~la~~L~~ 276 (405)
T PRK08776 199 LVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTL--DARLRVHQENADAIAALLDG 276 (405)
T ss_pred EEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcH--HHHHHHHHHHHHHHHHHHHc
Confidence 6655 599983 466788777 4667776654332233456889888888777665 34667778888888777764
No 255
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.06 E-value=3.6e-09 Score=91.59 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.+. +++++|++..+.+.+|.+.+ +++|.++|++||+++|+|++|+ +|.. ..... ...+|
T Consensus 149 ~~~l~~~i~-----~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~g~~---~~~~~--~~~~d 213 (403)
T TIGR01979 149 LDDLEKLLT-----EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA-VPHM---PVDVQ--ALDCD 213 (403)
T ss_pred HHHHHHHhc-----cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh-cCcc---ccCcc--ccCCC
Confidence 566766664 35678888888999998887 8999999999999999999997 4321 11122 23467
Q ss_pred hhhh--ccccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322 120 IVTM--AKGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD- 174 (195)
Q Consensus 120 i~~~--sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~- 174 (195)
++++ +|.+| .| +|++.+++++.+.+.....+ +.. +.+..+++++.++++.+.+
T Consensus 214 ~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~ 291 (403)
T TIGR01979 214 FYVFSGHKMYGPTG--IGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAI 291 (403)
T ss_pred EEEEecccccCCCC--ceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHh
Confidence 7655 59876 34 78888998877765422100 001 2345567777788877643
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.+.++..+..+++++.|++
T Consensus 292 g~~~~~~~~~~l~~~l~~~l~~ 313 (403)
T TIGR01979 292 GLENIEAHEHELTAYALERLGE 313 (403)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888999999888864
No 256
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.06 E-value=2.8e-09 Score=92.98 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|.+.+..|.+.. +++|.++|++||+++|+|++|+. +..+. . . +...|
T Consensus 140 ~~~l~~~i~-----~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a~-~~~~~-~--l---~~g~D 203 (403)
T PRK07503 140 PAALKAAIS-----DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYCT-PYLQR-P--L---ELGAD 203 (403)
T ss_pred HHHHHHhcC-----ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCC-c--h---hhCCC
Confidence 566776664 25678999999999998776 99999999999999999999973 23232 1 1 23346
Q ss_pred hh--hhccccCC-C-CceEEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIAN-G-FPMGAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~~-G-~~~g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ +++|.+++ | ..+|++++++++.+.++.. ........+|+.++.++..|+.+. ...++-.++...+.+.|+
T Consensus 204 i~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~--~r~~~~~~na~~~a~~L~ 281 (403)
T PRK07503 204 LVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA--LRMDRHCASAQAVAEWLA 281 (403)
T ss_pred EEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH--HHHHHHHHHHHHHHHHHH
Confidence 55 45699995 4 6788888888888877632 122235567888877777776653 233334455555555554
No 257
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.06 E-value=7e-09 Score=88.77 Aligned_cols=142 Identities=11% Similarity=0.077 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+++. .++..|.+-.+.+.+|...+ +++|.++|+++|+++|+|.+|+ +|.. ..... ...+|
T Consensus 119 ~~~l~~~l~~~---~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~~-~g~~---~~~~~--~~~~d 185 (368)
T PRK13479 119 AAEVEAALAAD---PRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMSS-FGAI---PIDIA--ELGID 185 (368)
T ss_pred HHHHHHHHHhC---CCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEcccc-cCCc---ccccc--ccCce
Confidence 67888877643 24555666666667888877 8999999999999999998875 6432 11222 23456
Q ss_pred hhhh--ccccCCCCceEEEEecHHHHHHhhcccc-----------------ccCCCchHHHHHHHHHHHHhhcc----hh
Q psy13322 120 IVTM--AKGIANGFPMGAVVTTTEIAQVLTKAAH-----------------FNTFGGNPVGCVIASTVLDVIKD----EE 176 (195)
Q Consensus 120 i~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~~-----------------~~t~~~~p~~~~aa~aal~~~~~----~~ 176 (195)
+++. +|.+.+...+|++++++++.+.+..... ...|+.+..++++..++++.+.+ ++
T Consensus 186 ~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~ 265 (368)
T PRK13479 186 ALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPA 265 (368)
T ss_pred EEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHH
Confidence 6544 5988632236999999988777654321 11135566677777778876532 45
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy13322 177 LQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 177 ~~~~l~~~~~~l~~~L~~ 194 (195)
..+++.++++++++.|++
T Consensus 266 ~~~~~~~~~~~l~~~L~~ 283 (368)
T PRK13479 266 RGARYANNQRTLVAGMRA 283 (368)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 667888899999888865
No 258
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.03 E-value=2.9e-09 Score=91.66 Aligned_cols=137 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|...++.|. ...+++|.++|++||+++|+||++.. +..+. .. ....|
T Consensus 126 ~~~l~~~i~-----~~tklv~le~P~NP~~~----~~dl~~I~~la~~~g~~lIvD~t~~~-~~~~~---p~---~~g~d 189 (366)
T PRK08247 126 LKAIEQAIT-----PNTKAIFIETPTNPLMQ----ETDIAAIAKIAKKHGLLLIVDNTFYT-PVLQR---PL---EEGAD 189 (366)
T ss_pred HHHHHHhcc-----cCceEEEEECCCCCCCc----HHHHHHHHHHHHHcCCEEEEECCCcc-ccccC---ch---hcCCc
Confidence 566776664 25678999998877554 34599999999999999999999842 11111 11 12235
Q ss_pred hh--hhccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IV--TMAKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~--~~sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++ ++||.+++ +...|+++++ +++.+.+.......+...+|+.+..++..|+.+. ..+++.+++.+.+.+.|++
T Consensus 190 i~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--~r~~~~~~~a~~l~~~L~~ 267 (366)
T PRK08247 190 IVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--LRMRQHEENAKAIAAFLNE 267 (366)
T ss_pred EEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 44 56799984 4678888886 5677766544333344567787777777776543 3445668888888888764
No 259
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.03 E-value=6.3e-09 Score=90.59 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH--HHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYEL--IKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l--~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
.++|++.+..... .++++|++-.+.+.+|.+.+ +++|.++ |++||+++|+|++++ +|.. .+......
T Consensus 123 ~~~l~~~l~~~~~-~~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s-~g~~-----~id~~~~~ 191 (401)
T PLN02409 123 LDILKSKLRQDTN-HKIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS-IGAL-----DFRMDEWG 191 (401)
T ss_pred HHHHHHHHhhCcC-CCccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc-cCCc-----cccccccC
Confidence 6788888875210 25667877777777888876 7777888 999999999999987 5321 12211234
Q ss_pred cchhhh--ccccCCCCceEEEEecHHHHHHhhccc-----c----------cc---CCCchHHHHHHHHHHHHhhcc---
Q psy13322 118 PDIVTM--AKGIANGFPMGAVVTTTEIAQVLTKAA-----H----------FN---TFGGNPVGCVIASTVLDVIKD--- 174 (195)
Q Consensus 118 pdi~~~--sK~l~~G~~~g~v~~~~~i~~~l~~~~-----~----------~~---t~~~~p~~~~aa~aal~~~~~--- 174 (195)
.|++++ +|.|++...+|+++.++++++.+.... . .. .++.+...+.+..++++.+.+
T Consensus 192 ~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~ 271 (401)
T PLN02409 192 VDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGL 271 (401)
T ss_pred ccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhH
Confidence 566655 599975445899999998877765321 0 11 224455677888888887643
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++.++.+++.+++++.|++
T Consensus 272 e~i~~~~~~l~~~l~~~L~~ 291 (401)
T PLN02409 272 ENVIARHARLGEATRLAVEA 291 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999988865
No 260
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.03 E-value=4.1e-09 Score=91.47 Aligned_cols=137 Identities=12% Similarity=0.078 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++|.+.++.|.... +++|.++|++||+++|+||+++. +..+. . . +...|
T Consensus 136 ~e~l~~~i~-----~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a~-~~~~~-p--~---~~gaD 199 (388)
T PRK07811 136 LDAVRAAIT-----PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFAS-PYLQQ-P--L---ALGAD 199 (388)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCCc-cccCC-c--h---hhCCc
Confidence 566776664 25679999999888887666 99999999999999999999873 22222 1 1 22346
Q ss_pred hhh--hccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVT--MAKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~--~sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++ ++|.+++ | ..+|+++++ +++.+.+...........+|+.+..++..|+.+ +..+++..++...+.+.|++
T Consensus 200 ivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl--~~R~~~~~~na~~la~~L~~ 277 (388)
T PRK07811 200 VVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTL--AVRMDRHSENAEAVAEFLAG 277 (388)
T ss_pred EEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence 654 4699984 3 467888875 566665543322222334566666555555543 33456666777777777653
No 261
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.02 E-value=7.9e-10 Score=92.33 Aligned_cols=143 Identities=13% Similarity=0.053 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIA-ESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aaviv-Epv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~ 117 (195)
.+++++.+++. .++++|++ .| +..|...+ +++|.++|++||+++|+||+|.. +.+.+. . ........
T Consensus 142 ~~~l~~~l~~~---~~~k~v~l~~p--~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~~~~~-~-~~~~~~~~ 210 (294)
T cd00615 142 PETFKKALIEH---PDAKAAVITNP--TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFRFHPI-L-PSSAAMAG 210 (294)
T ss_pred HHHHHHHHHhC---CCceEEEEECC--CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhccCcc-c-CcchhhcC
Confidence 68888888754 24444444 44 34787776 99999999999999999999974 322222 1 11111234
Q ss_pred cchh--hhccccCCCCce-EEEEecHHH--HHHhhccc-cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322 118 PDIV--TMAKGIANGFPM-GAVVTTTEI--AQVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII 189 (195)
Q Consensus 118 pdi~--~~sK~l~~G~~~-g~v~~~~~i--~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~ 189 (195)
.|++ +++|+++ |++. |++..+++. .+.+.... ...|.+.+...+++..++++.+.. +++.+++.++.++++
T Consensus 211 ~div~~S~hK~l~-g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~~~~~~r 289 (294)
T cd00615 211 ADIVVQSTHKTLP-ALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEGKELVEELIELALYAR 289 (294)
T ss_pred CcEEEEchhcccc-hHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5665 4469885 3433 333333321 12222211 223445666777777788777643 567788889999999
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 290 ~~l~~ 294 (294)
T cd00615 290 QEINK 294 (294)
T ss_pred HHHhC
Confidence 88864
No 262
>PLN02509 cystathionine beta-lyase
Probab=99.02 E-value=4.3e-09 Score=93.33 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++|.+.++.|.+.. +++|.++|++||+++|+||+|. .+..+. . .+...|
T Consensus 207 ~e~l~~ai~-----~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a-~~~~~~-p-----l~~gaD 270 (464)
T PLN02509 207 LDEVAAAIG-----PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIM-SPVLSR-P-----LELGAD 270 (464)
T ss_pred HHHHHHhCC-----cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcc-ccccCC-h-----hhcCCc
Confidence 456666553 36779999999999998655 9999999999999999999985 333332 1 123457
Q ss_pred hhhh--ccccCC-C-CceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVTM--AKGIAN-G-FPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~~--sK~l~~-G-~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
++++ +|.++| | .-.|++++++ .+.+.+...........+|+.++.++..|+.+. ..+++..++.+++.+.|++
T Consensus 271 ivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R~~r~~~nA~~la~~L~~ 348 (464)
T PLN02509 271 IVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSS 348 (464)
T ss_pred EEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhc
Confidence 7655 599985 3 3456666544 444433221111122347888888888888763 3566777777777777753
No 263
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.00 E-value=5.3e-09 Score=90.76 Aligned_cols=137 Identities=15% Similarity=0.076 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.+.+ .++++|++|.+.++.|.+.+ +++|.++|++||+++|+||+|+ .+.... ... .| .|
T Consensus 126 ~~~l~~~i~~----~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a-~~~~~~---~l~-~G--aD 190 (385)
T PRK08574 126 TEDIIEAIKE----GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA-TPLLYR---PLR-HG--AD 190 (385)
T ss_pred HHHHHHhcCc----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC-ccccCC---hhh-hC--Cc
Confidence 4667776652 25778999999999998877 8999999999999999999996 322221 111 23 36
Q ss_pred hh--hhccccCC-CC-ceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIAN-GF-PMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~~-G~-~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ +++|.++| |- ..|++++ ++++.+.+.......+...+|+.++.++..|+.+. ..+++-.++..++.+.|+
T Consensus 191 ivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~--~R~~~~~~na~~la~~L~ 267 (385)
T PRK08574 191 FVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLE--VRFERQCRNAMAIAEFLS 267 (385)
T ss_pred EEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHH
Confidence 55 45699984 43 3464555 66777766543332344557887777777777653 244555556666666665
No 264
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=98.99 E-value=7.5e-09 Score=89.07 Aligned_cols=138 Identities=17% Similarity=0.113 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
.+++++.|.. ++++++ +.+..+..|...+ +++|.++|++||+++|+|++|+ . ... ....+| .
T Consensus 138 ~~~le~ai~~-----~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi~vivD~a~~-~--~~~---~~~~~g--~ 200 (363)
T TIGR01437 138 AEQLEAAITE-----KTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNLPLIVDAAAE-E--DLQ---KYYRLG--A 200 (363)
T ss_pred HHHHHHhcCh-----hceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCCeEEEECCCC-C--chH---HHHHcC--C
Confidence 6788887762 334444 5554455676666 8899999999999999999997 2 111 111123 4
Q ss_pred chhhhc--cccCCCCceEEEEecHHHHHHhhccccc--cCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHh
Q psy13322 119 DIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 di~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~--~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~~~L 192 (195)
|++++| |.|+ |+++|++++++++++.+....+. ..+.....++++..++++.+.+ .+..+...++.+++.+.|
T Consensus 201 D~~~~S~~K~l~-gp~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L 279 (363)
T TIGR01437 201 DLVIYSGAKAIE-GPTSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLTAALEQYLSTGKESGAEMVAKLTPFIEAL 279 (363)
T ss_pred CEEEEeCCcccC-CCceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHH
Confidence 777665 9885 56789998888877765432211 1111112334555556665432 344455556677888888
Q ss_pred hcC
Q psy13322 193 RVV 195 (195)
Q Consensus 193 ~~l 195 (195)
+++
T Consensus 280 ~~i 282 (363)
T TIGR01437 280 NTL 282 (363)
T ss_pred hcC
Confidence 753
No 265
>KOG1358|consensus
Probab=98.99 E-value=7.4e-10 Score=94.14 Aligned_cols=150 Identities=20% Similarity=0.107 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhcC------CC--CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc
Q psy13322 37 NKFYEQLVNAFQYNV------PI--TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY 108 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~------~~--~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~ 108 (195)
++++++|+..+.+.. ++ -....|++|.++-+.|++++ |++|.++..||...+|+||..+ ||..|+.+
T Consensus 207 hndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~RvildEs~S-fG~lg~~G 281 (467)
T KOG1358|consen 207 HNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRVILDESLS-FGVLGKTG 281 (467)
T ss_pred CCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEEEEecccc-cccccccC
Confidence 344677777664321 11 12668999999999999999 9999999999999999999998 65555422
Q ss_pred c-cccccCCCc---chhhhc--cccCCCCceEEEEecHHHHHHhh--ccccccCCCchHHHHHHHHHHHHhhcc-hhHHH
Q psy13322 109 W-GFEMHGVSP---DIVTMA--KGIANGFPMGAVVTTTEIAQVLT--KAAHFNTFGGNPVGCVIASTVLDVIKD-EELQY 179 (195)
Q Consensus 109 ~-~~~~~~~~p---di~~~s--K~l~~G~~~g~v~~~~~i~~~l~--~~~~~~t~~~~p~~~~aa~aal~~~~~-~~~~~ 179 (195)
. -.+|+++.+ |+++.| -++++| .|+++++.-+.++-+ ..++-++-+.+|+...||..+++.++. ++..+
T Consensus 282 rGvteH~~v~~~~iDiv~~sm~~alas~--GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p~~~~ 359 (467)
T KOG1358|consen 282 RGVTEHFGVPITDIDIVTASMETALASG--GGFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNPEIVQ 359 (467)
T ss_pred ccccccCCCCccceeeeeeccccccccc--CceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHHHhhCcchhh
Confidence 2 347887753 566554 555522 356777555544322 222333445688888999999998854 56666
Q ss_pred HHHHHHHHHHHHhh
Q psy13322 180 NCKQVSAQIIGYLR 193 (195)
Q Consensus 180 ~l~~~~~~l~~~L~ 193 (195)
.++.....+...|+
T Consensus 360 ~L~~k~~~~H~~l~ 373 (467)
T KOG1358|consen 360 PLRAKVAKFHAALS 373 (467)
T ss_pred hhhccccccchhhh
Confidence 77766666555554
No 266
>PLN02651 cysteine desulfurase
Probab=98.98 E-value=3.9e-09 Score=90.44 Aligned_cols=138 Identities=17% Similarity=0.181 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.++|++.|. +++++|++..+.+..|.+.+ +++|.++|++||+++++|.+|+ +|.. .+....+..|
T Consensus 128 ~~~l~~~i~-----~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-~g~~-----~~~~~~~~~D 192 (364)
T PLN02651 128 LDELAAAIR-----PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-VGKI-----PVDVDDLGVD 192 (364)
T ss_pred HHHHHHhcC-----CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-hCCc-----ccCcccCCCC
Confidence 577777775 35678999999999998887 9999999999999999999998 4321 1222234469
Q ss_pred hhhhc--cccCCCCceEEEEecHHHHHHhhccccc------cC-CCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF------NT-FGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI 188 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t-~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l 188 (195)
++++| | +++...+|++..+++..+.+.....+ .. ...|..++.+..++|+.+.+ ++..++.++..+++
T Consensus 193 ~~~~s~hK-~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l 271 (364)
T PLN02651 193 LMSISGHK-IYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHMKALRERL 271 (364)
T ss_pred EEEechhh-hCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88886 8 54323478888887655444322110 11 13456677888888887743 55667888888888
Q ss_pred HHHhh
Q psy13322 189 IGYLR 193 (195)
Q Consensus 189 ~~~L~ 193 (195)
.+.|+
T Consensus 272 ~~~l~ 276 (364)
T PLN02651 272 LNGLR 276 (364)
T ss_pred HHHHH
Confidence 88775
No 267
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.96 E-value=1.4e-08 Score=85.99 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .++++|++..+ .|...+ +++|+++|++||+++|+|++|+ +|.... -...+...|
T Consensus 96 ~~~l~~~i~-----~~~~~v~~~~~---~G~~~~----~~~i~~l~~~~~i~li~D~a~~-~g~~~~----~~~~~~~~d 158 (352)
T cd00616 96 PELIEAAIT-----PRTKAIIPVHL---YGNPAD----MDAIMAIAKRHGLPVIEDAAQA-LGATYK----GRKVGTFGD 158 (352)
T ss_pred HHHHHHhcC-----cCCeEEEEECC---CCCcCC----HHHHHHHHHHcCCeEEEECCCC-CCCeEC----CEEcccCcc
Confidence 567777663 25667776553 565554 8999999999999999999998 443211 011222346
Q ss_pred hhhhc----cccCCCCceEEEEec-HHHHHHhhcc---c------------cccCCCchHHHHHHHHHHHHhhcchhHHH
Q psy13322 120 IVTMA----KGIANGFPMGAVVTT-TEIAQVLTKA---A------------HFNTFGGNPVGCVIASTVLDVIKDEELQY 179 (195)
Q Consensus 120 i~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~---~------------~~~t~~~~p~~~~aa~aal~~~~~~~~~~ 179 (195)
+.++| |.+++| .+|+++++ +++.+.+... . ...++..+++.++.++..++.+ ++..+
T Consensus 159 ~~~~S~~~~K~~~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~ 235 (352)
T cd00616 159 AGAFSFHPTKNLTTG-EGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL--DEIIA 235 (352)
T ss_pred eeEEcCCCCCCCccc-CceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh--HHHHH
Confidence 66665 999643 45777775 4666654321 1 0123345677777777666654 45667
Q ss_pred HHHHHHHHHHHHhhc
Q psy13322 180 NCKQVSAQIIGYLRV 194 (195)
Q Consensus 180 ~l~~~~~~l~~~L~~ 194 (195)
+.+++.+++++.|++
T Consensus 236 ~~~~~~~~~~~~L~~ 250 (352)
T cd00616 236 RRREIAERYKELLAD 250 (352)
T ss_pred HHHHHHHHHHHHhcC
Confidence 788888998888865
No 268
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.96 E-value=2.2e-08 Score=88.24 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc--cccCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF--EMHGV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~--~~~~~ 116 (195)
+++.|++.|+...+ ..+.+|+..|-.+..|.. +.+++|.++|++||+++|+|++|+.. ..- .... .....
T Consensus 190 D~e~Le~aIt~~~~-kai~~Vv~Tp~t~~~g~~----ddL~eIa~la~k~gI~lIvDaAyg~~-~~~--~~~~~~~g~~~ 261 (444)
T TIGR03531 190 DVEDIERAIEEIGP-DNILCVLSTTSCFAPRSP----DDIEEIAKICANYDIPHIVNNAYGLQ-SNK--YMELINKAIKV 261 (444)
T ss_pred CHHHHHHHHHhccC-CCEEEEEEcCCcCCCcch----hCHHHHHHHHHHcCCEEEEECcCcCc-Chh--hhhhhhccccc
Confidence 36889999885432 256667666653333333 34999999999999999999999832 110 0001 11112
Q ss_pred -Ccchhhh--ccccC-CCCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322 117 -SPDIVTM--AKGIA-NGFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII 189 (195)
Q Consensus 117 -~pdi~~~--sK~l~-~G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~ 189 (195)
..|++++ +|.+. .|+ .|.+++ ++++.+.+...... .. .+..++.+..+++....+ ++++++..++.+++.
T Consensus 262 Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g-~~-~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~ 338 (444)
T TIGR03531 262 GRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG-RA-SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLK 338 (444)
T ss_pred cCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC-CC-CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 2466666 49988 454 555656 56777777654222 22 233455555555554433 577788888888888
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 339 ~~L~~ 343 (444)
T TIGR03531 339 ELLQK 343 (444)
T ss_pred HHHHH
Confidence 88875
No 269
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.95 E-value=1.8e-08 Score=88.06 Aligned_cols=138 Identities=9% Similarity=0.078 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++..+.+..|.+.+ +++|.++|++||+++|+|++|. +|... .... ...+|
T Consensus 163 ~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~g~~~---~~~~--~~~~d 227 (424)
T PLN02855 163 VEQLKELLS-----EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-VPHMP---VDVQ--TLGAD 227 (424)
T ss_pred HHHHHHHhc-----cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCcC---CCch--hcCCC
Confidence 567777665 25678889999999998887 8899999999999999999996 43221 1122 23467
Q ss_pred hhhh--ccccC-CCCceEEEEecHHHHHHhhccccc--------------------cCC-CchHHHHHHHHHHHHhhcc-
Q psy13322 120 IVTM--AKGIA-NGFPMGAVVTTTEIAQVLTKAAHF--------------------NTF-GGNPVGCVIASTVLDVIKD- 174 (195)
Q Consensus 120 i~~~--sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~--------------------~t~-~~~p~~~~aa~aal~~~~~- 174 (195)
++++ .|.+| .| +|++.+++++.+.+.....+ +.. +.+..+.++..++++.+.+
T Consensus 228 ~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~ 305 (424)
T PLN02855 228 FLVASSHKMCGPTG--IGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEI 305 (424)
T ss_pred EEEeecccccCCCc--cEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHh
Confidence 7655 59655 34 78999998887766432100 111 1355666777788876643
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
++..++.++..+++++.|++
T Consensus 306 g~~~i~~~~~~l~~~l~~~L~~ 327 (424)
T PLN02855 306 GMDRIHEYEVELGTYLYEKLSS 327 (424)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888899999888865
No 270
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.94 E-value=1.3e-08 Score=88.33 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+. .++++|++|...+..|.+.. +++|.++|+++|+++|+||+|... .... .. .+..|
T Consensus 126 ~~~l~~ai~-----~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~---pl---~~gaD 189 (382)
T TIGR02080 126 EQALRAALA-----QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFLSP-ALQN---PL---ALGAD 189 (382)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCccc-ccCC---ch---hhCCC
Confidence 466666664 25678999999999998776 889999999999999999999632 1111 11 12236
Q ss_pred hh--hhccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ +++|.++| ++..|++++ ++++.+.+.......+...+|+.+..++..++.+.. .+++..++...+.+.|+
T Consensus 190 ivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~--R~~~~~~na~~~a~~L~ 266 (382)
T TIGR02080 190 LVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA--RMRLQQRNAQAIVEYLQ 266 (382)
T ss_pred EEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH--HHHHHHHHHHHHHHHHH
Confidence 55 55799974 567888776 567777665443344556788888877777765532 34556667776666665
No 271
>KOG0256|consensus
Probab=98.93 E-value=2.7e-08 Score=85.16 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCccccccc----
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH---- 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~---- 114 (195)
.+.||.++++.+.. -+|.+||+--.++.=|+ ..+++.|..+...+.++++.+|+|||++|-.+....|.++...
T Consensus 210 v~alE~A~~~A~~~~~kVkGvlitNPsNPLG~-~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~ev~~~~ 288 (471)
T KOG0256|consen 210 VEALEAALNQARKLGLKVKGVLITNPSNPLGT-TLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLEVRKDP 288 (471)
T ss_pred HHHHHHHHHHHHHhCCceeEEEEeCCCCCCCC-ccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHHHhhcc
Confidence 45666665544321 48998888877777786 5577889999999999999999999999865544435444221
Q ss_pred CCCcc----hhhhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHHHHHHh--h-cc--hhHHHHHHH
Q psy13322 115 GVSPD----IVTMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--I-KD--EELQYNCKQ 183 (195)
Q Consensus 115 ~~~pd----i~~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~-~~--~~~~~~l~~ 183 (195)
.+.|| +-.+||-|| .|+++|.+-..+ ++..+..+....+ ..++..+.-...-|.- + +. .+...+++.
T Consensus 289 ~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~f~~~yl~en~~Rl~~ 366 (471)
T KOG0256|consen 289 HLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEEFTREYLRENNKRLRI 366 (471)
T ss_pred ccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 12455 236699999 999999988765 5666555443211 2245555544444432 2 11 345677888
Q ss_pred HHHHHHHHhhcC
Q psy13322 184 VSAQIIGYLRVV 195 (195)
Q Consensus 184 ~~~~l~~~L~~l 195 (195)
+-.++.+.|+++
T Consensus 367 rh~~~~~gLk~l 378 (471)
T KOG0256|consen 367 RHRYIVEGLKAL 378 (471)
T ss_pred HHHHHHhhHHhc
Confidence 888888888764
No 272
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=98.92 E-value=6.7e-08 Score=82.92 Aligned_cols=140 Identities=15% Similarity=0.245 Sum_probs=102.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.|. .++..|.+--+.+..|.+.+ +++|.++|+++|+++++|=+|+ +|..- +....+..|
T Consensus 129 ~~~~~~~l~-----~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~-----id~~~~~~D 193 (371)
T PF00266_consen 129 LEDLEEALN-----PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP-----IDLDELGAD 193 (371)
T ss_dssp HHHHHHHHH-----TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-------TTTTTES
T ss_pred hhhhhhhhc-----cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-ccccc-----ccccccccc
Confidence 688888886 37778999999889999888 9999999999999999999988 54331 222245678
Q ss_pred hhhhc--cccCCCCceEEEEecHHHHHHhhccccccC------------------C---CchHHHHHHHHHHHHhhcc--
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNT------------------F---GGNPVGCVIASTVLDVIKD-- 174 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t------------------~---~~~p~~~~aa~aal~~~~~-- 174 (195)
++++| | |+++--+|.+..+++..+.+.+...+.. | ..+.....+..++++.+.+
T Consensus 194 ~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g 272 (371)
T PF00266_consen 194 FLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIG 272 (371)
T ss_dssp EEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHH
T ss_pred eeeecccc-cCCCCchhhheehhhhhhccccccccccccccccchhcccccccccccccceeeehhhhHHHHHhhhhccc
Confidence 88887 9 8765458999999998888854321111 1 2355667777788887743
Q ss_pred -hhHHHHHHHHHHHHHHHhhcC
Q psy13322 175 -EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 175 -~~~~~~l~~~~~~l~~~L~~l 195 (195)
+.+.++..++.+++.+.|.++
T Consensus 273 ~~~i~~~~~~l~~~~~~~l~~~ 294 (371)
T PF00266_consen 273 IERIRERIRELAEYLREALEEL 294 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhHHHHHHhhhhcC
Confidence 566788888888888888653
No 273
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.92 E-value=1.3e-08 Score=87.41 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.++ .++++|++..+.+.+|.+.+ +++|.++|++||+++++|++|+ +|.. .+.......|
T Consensus 126 ~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~-----~~~~~~~~~D 190 (379)
T TIGR03402 126 LEELRAAIT-----DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKI-----PIDLKEMNID 190 (379)
T ss_pred HHHHHHhcC-----CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cccc-----ccCcccCCCC
Confidence 567777664 25678888888889998887 8899999999999999999997 4321 2222235678
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHHHHhhcccc-------ccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAAH-------FNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQ 187 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~~-------~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~ 187 (195)
++++| |-+| .| +|++..+++.. +..... ......|..+..+..++++.+.+ ++..++.+++.++
T Consensus 191 ~~~~s~~K~~gp~G--~g~l~v~~~~~--~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~ 266 (379)
T TIGR03402 191 MLSLSGHKLHGPKG--VGALYIRKGTR--FRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVRALRDR 266 (379)
T ss_pred EEEEcHHHcCCCCc--eEEEEECCCCC--CCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88888 9444 34 67777776431 211110 01123456677777788877643 4556778888888
Q ss_pred HHHHhh
Q psy13322 188 IIGYLR 193 (195)
Q Consensus 188 l~~~L~ 193 (195)
+++.|+
T Consensus 267 l~~~l~ 272 (379)
T TIGR03402 267 LEAGLL 272 (379)
T ss_pred HHHHHH
Confidence 888876
No 274
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.91 E-value=2.2e-08 Score=86.90 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+. .++++|++|...+..|.+.. +++|.++|+++|+++|+||+|... .... .. ....|
T Consensus 127 ~e~l~~~l~-----~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~-~~~~---pl---~~gaD 190 (386)
T PRK08045 127 EQALRAALA-----EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP-ALQN---PL---ALGAD 190 (386)
T ss_pred HHHHHHhcc-----cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc-ccCC---ch---hhCCC
Confidence 456666654 25678999999999998776 899999999999999999998632 1111 11 22336
Q ss_pred hh--hhccccCC--CCceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IV--TMAKGIAN--GFPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~--~~sK~l~~--G~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++ +++|.++| +...|++++ ++++.+.+.......+...+|+.+..++.+|+.+. ..+++..++...+.+.|+
T Consensus 191 ivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~--~R~~~~~~na~~la~~L~ 267 (386)
T PRK08045 191 LVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV--PRMELAQRNAQAIVKYLQ 267 (386)
T ss_pred EEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHH--HHHHHHHHHHHHHHHHHH
Confidence 55 45699973 456788777 46676666543333445578888888888887653 244556666666666654
No 275
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.91 E-value=5.2e-08 Score=83.34 Aligned_cols=147 Identities=10% Similarity=0.115 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc-CCCcccccccCC-
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT-GDNYWGFEMHGV- 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~-G~~~~~~~~~~~- 116 (195)
++++|++.+++. ..+.+++.+ .++.|.+.+ +++|.++|++||+++++|++|+++-.. ...........+
T Consensus 142 d~~~l~~~l~~~----~~~vv~~~~-~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~ 212 (373)
T TIGR03812 142 DVKDVEDLIDDN----TIGIVGIAG-TTELGQIDD----IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFS 212 (373)
T ss_pred CHHHHHHHHhhC----cEEEEEECC-CCCCCccCC----HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcccc
Confidence 367788877632 345566665 467898876 999999999999999999999754110 000000101111
Q ss_pred --Ccchhhhc--cccC-CCCceEEEE-ecHHHHHHhhccccc--cC------CCchHHHHHHHHHHHHhhcc---hhHHH
Q psy13322 117 --SPDIVTMA--KGIA-NGFPMGAVV-TTTEIAQVLTKAAHF--NT------FGGNPVGCVIASTVLDVIKD---EELQY 179 (195)
Q Consensus 117 --~pdi~~~s--K~l~-~G~~~g~v~-~~~~i~~~l~~~~~~--~t------~~~~p~~~~aa~aal~~~~~---~~~~~ 179 (195)
..|.+++| | ++ ++.+.|+++ .++++.+.+...... .. .+.++.+++++.++|+.+.+ +++.+
T Consensus 213 ~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~ 291 (373)
T TIGR03812 213 LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVA 291 (373)
T ss_pred CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHH
Confidence 23454443 7 54 556776555 577777766432111 10 12345678888899987754 45788
Q ss_pred HHHHHHHHHHHHhhcC
Q psy13322 180 NCKQVSAQIIGYLRVV 195 (195)
Q Consensus 180 ~l~~~~~~l~~~L~~l 195 (195)
++.+++++|++.|+++
T Consensus 292 ~~~~~~~~l~~~L~~~ 307 (373)
T TIGR03812 292 ECMENTRYLVEELKKI 307 (373)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998753
No 276
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.90 E-value=1.5e-08 Score=87.37 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+. .++++|++|...+..|.... +++|+++|+++|+++|+||++.. +..++ ..+.-.|
T Consensus 126 ~~~l~~~i~-----~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~~-~~~~~------pl~~gaD 189 (364)
T PRK07269 126 EEELIAAIE-----EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFYS-PIYQR------PIELGAD 189 (364)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCcc-cccCC------chhhCCc
Confidence 456666664 35678999999998887776 99999999999999999999642 11111 1244567
Q ss_pred hhhhc--cccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTMA--KGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~s--K~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++++| |.++| | .-.|+++++ +++.+.+...........+|+.++.++..|+.+. ..+++-+++...+.+.|+
T Consensus 190 ivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~--~r~~~~~~na~~~a~~L~ 266 (364)
T PRK07269 190 IVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS--LRMERSTANAQEVVAFLK 266 (364)
T ss_pred EEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHH
Confidence 77665 99984 3 345677764 5676666532212234568888888887777653 344555666666666654
No 277
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.90 E-value=1.7e-08 Score=87.00 Aligned_cols=127 Identities=14% Similarity=0.106 Sum_probs=87.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccCC--C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIAN--G 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~~--G 130 (195)
+++.|++|...+.+|.+.+ +++|.++|+++|+++|+||+|... .|.. .. .+..|++ +++|.++| |
T Consensus 132 ~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~~--~~~~--p~---~~g~Divv~S~sK~l~G~~g 200 (366)
T PRK07582 132 GADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTATP--LGQR--PL---ELGADLVVASDTKALTGHSD 200 (366)
T ss_pred CceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCCc--cccC--ch---hcCCcEEEecccccccCCCC
Confidence 5678999998888887665 999999999999999999998521 2221 11 2334665 44699974 6
Q ss_pred CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.++|+++++ +++.+.+...........+|+.+..++..|+.+ +-.+++..++...+.+.|++
T Consensus 201 ~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl--~~R~~~~~~na~~la~~L~~ 263 (366)
T PRK07582 201 LLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTL--GLRFARQCANALAVAELLAG 263 (366)
T ss_pred eeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccH--HHHHHHHHHHHHHHHHHHHh
Confidence 788999875 677776654332223345678777666666644 23446667777777777764
No 278
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.88 E-value=1.8e-08 Score=87.19 Aligned_cols=136 Identities=16% Similarity=0.149 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.++ .++++|++|.+.++.|.+.. +++|.++|++||+++|+|++|. .+.... .. ....|
T Consensus 121 ~~~le~~i~-----~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~-~~~~~~---~l---~~g~D 184 (378)
T TIGR01329 121 LDKVKAALG-----PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMM-SPLLCN---PL---ELGAD 184 (378)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc-ccccCC---hh---hcCCc
Confidence 466666664 36789999999999998876 9999999999999999999984 222111 12 22347
Q ss_pred hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++++ +|.++| +...|+++++ +++.+.+...........+|+.+..++..++.+ +...++-.++...+.+.|+
T Consensus 185 i~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~R~e~~~~na~~la~~L~ 261 (378)
T TIGR01329 185 IVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AIRIEKQQENARAIAMFLS 261 (378)
T ss_pred EEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HHHHHHHHHHHHHHHHHHH
Confidence 7655 599984 3567888774 455555543322123344666655444444433 3344555556555555554
No 279
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.88 E-value=2.7e-08 Score=87.43 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|++.+..|.+.. +++|.++|++||+++|+||+|+ .+.... ......|
T Consensus 133 ~e~le~ai~-----~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a-~~~~~~------p~~~gaD 196 (425)
T PRK06084 133 IAALEALID-----ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA-TPVLCR------PFEHGAD 196 (425)
T ss_pred HHHHHHHhc-----cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC------hhhcCCC
Confidence 577777775 25678999999999998877 8999999999999999999997 322221 1123456
Q ss_pred hh--hhccccCC-CCceEEEEe
Q psy13322 120 IV--TMAKGIAN-GFPMGAVVT 138 (195)
Q Consensus 120 i~--~~sK~l~~-G~~~g~v~~ 138 (195)
++ +++|.+++ |.++|.+++
T Consensus 197 ivv~S~tK~l~G~g~~~gG~v~ 218 (425)
T PRK06084 197 IVVHSLTKYIGGHGTSIGGIVV 218 (425)
T ss_pred EEEECchhcccccccceeEEEE
Confidence 66 55699984 666665555
No 280
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.87 E-value=3.5e-08 Score=84.48 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.++|++.+. .++++|++..+.+++|.+.+ +++|.++|+++|+++|+|++|+ +|...- ... ...+|
T Consensus 127 ~~~l~~~~~-----~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~~~---~~~--~~~~D 191 (376)
T TIGR01977 127 PERIKRAIK-----TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVIPI---DMT--ELAID 191 (376)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCccCC---Cch--hcCCC
Confidence 567777664 25678888899999998887 8899999999999999999997 543321 122 23467
Q ss_pred hhhhc--cccCCCCceEEEEecHHH-HHHhhcccc----------------ccCCCchHHHHHHHHHHHHhhcc---hhH
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEI-AQVLTKAAH----------------FNTFGGNPVGCVIASTVLDVIKD---EEL 177 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i-~~~l~~~~~----------------~~t~~~~p~~~~aa~aal~~~~~---~~~ 177 (195)
++++| |.+++.-..|.++.+++. +..+..... ....+.+...+++..++++.+.+ +.+
T Consensus 192 ~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~ 271 (376)
T TIGR01977 192 MLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANI 271 (376)
T ss_pred EEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 77665 988742224555555432 111111000 00112355667777788887754 467
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
.++.+++.+++.+.|++
T Consensus 272 ~~~~~~l~~~~~~~l~~ 288 (376)
T TIGR01977 272 AKKECMLTEKLLNGLRE 288 (376)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 78888899998888864
No 281
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.85 E-value=3.5e-08 Score=85.76 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. +++++|++|.+.+..|.+.. +++|.++|+++|+++|+||+|.. +.... .. .+-.|
T Consensus 128 ~e~l~~~i~-----~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~~-~~~~~---pl---~~GaD 191 (388)
T PRK08861 128 AAALDAALA-----KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFLT-PVLQK---PL---ELGAD 191 (388)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCccc-cccCC---Cc---ccCCC
Confidence 455666554 36679999999999998887 88999999999999999999972 11111 11 23457
Q ss_pred hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++. +|.++| +...|+++++ +++.+.+...........+|+.+...+..|+.+. -.+++-.++...+.+.|+
T Consensus 192 ivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~--lR~~~~~~~a~~~a~~L~ 268 (388)
T PRK08861 192 FVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLG--ARMRVHEESAQQILAYLQ 268 (388)
T ss_pred EEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHH
Confidence 7655 599985 3567777775 4566655433223334557887776666666553 223444445555555443
No 282
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.84 E-value=3.3e-08 Score=85.12 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. .+.++|++..+.+.+|.+.+ +++|.++|++||+++++|++|+ +|.. .........|
T Consensus 130 ~~~l~~~i~-----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~-~g~~-----~~~~~~~~~D 194 (382)
T TIGR03403 130 AEQVREAIT-----EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA-IGKI-----PVDVQKAGVD 194 (382)
T ss_pred HHHHHHhcc-----cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh-cCCC-----ccCccccCCC
Confidence 566776664 24567888888999998887 8899999999999999999987 4321 1211233468
Q ss_pred hhhhc--cccC-CCCceEEEEecHHHH--HHhhccc---cccCCCchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHH
Q psy13322 120 IVTMA--KGIA-NGFPMGAVVTTTEIA--QVLTKAA---HFNTFGGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQII 189 (195)
Q Consensus 120 i~~~s--K~l~-~G~~~g~v~~~~~i~--~~l~~~~---~~~t~~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l~ 189 (195)
++++| |.+| .| +|++..++... ..+.... .....+.|..++.++.++++...+ +...+++++.+++|.
T Consensus 195 ~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~ 272 (382)
T TIGR03403 195 FLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLE 272 (382)
T ss_pred EEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCCCcccCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88777 9665 34 57776665421 1110000 011234567777777888876643 455678888999998
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 273 ~~L~~ 277 (382)
T TIGR03403 273 DALLE 277 (382)
T ss_pred HHHhc
Confidence 88864
No 283
>PRK14012 cysteine desulfurase; Provisional
Probab=98.84 E-value=2.6e-08 Score=86.53 Aligned_cols=139 Identities=13% Similarity=0.124 Sum_probs=89.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.|++.|. .++++|++..+.+.+|.+.+ +++|.++|++||+++|+|++|+ +|..- +......+|
T Consensus 134 ~~~l~~~i~-----~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~-----~~~~~~~~D 198 (404)
T PRK14012 134 LEKLEAAMR-----DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP-----IDLSKLKVD 198 (404)
T ss_pred HHHHHHhcC-----CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCcccCCCC
Confidence 577777775 25668999999999998887 8999999999999999999997 43321 111134578
Q ss_pred hhhhc--cccCCCCceEEEEecHHHHHHhhccccc------cCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322 120 IVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHF------NTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI 188 (195)
Q Consensus 120 i~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~------~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l 188 (195)
++++| |.+|.+ .+|+++++++....+.....+ ... ..+.....+..++++.+.. ++..++.+++.+++
T Consensus 199 ~~~~s~~K~~gp~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l 277 (404)
T PRK14012 199 LMSFSAHKIYGPK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERIRALRDRL 277 (404)
T ss_pred EEEEehhhccCCC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88886 977632 378887776532222221111 111 1233334444466655432 44667788888888
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
.+.|++
T Consensus 278 ~~~L~~ 283 (404)
T PRK14012 278 WNGIKD 283 (404)
T ss_pred HHHHhc
Confidence 887764
No 284
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.84 E-value=3.1e-08 Score=86.24 Aligned_cols=135 Identities=11% Similarity=0.072 Sum_probs=88.0
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi 120 (195)
+.+++.+. .++++|++|.+.+..|.+.. +++|.++|++||+++|+|++|+. +. . +....+-.|+
T Consensus 137 e~l~~~l~-----~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~-p~-~-----~~Pl~~GaDi 200 (394)
T PRK09028 137 EGIRELIR-----PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWAS-PI-N-----SRPFEMGVDI 200 (394)
T ss_pred HHHHHhcC-----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCccc-cc-c-----CCccccCceE
Confidence 45666554 36779999999998887755 99999999999999999999972 11 1 1112344577
Q ss_pred hhh--ccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 121 VTM--AKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 121 ~~~--sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++. .|.++| ....|+++.++++.+.+...........+|+.+...+..|+.+. -.+++-.++...+.+.|+
T Consensus 201 vv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~la~~L~ 275 (394)
T PRK09028 201 SIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLG--VRLAQHEKNALKVANWLA 275 (394)
T ss_pred EEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--HHHHHHHHHHHHHHHHHh
Confidence 755 499974 35667777777766655433222223457777776666666542 234555555555655554
No 285
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=4.9e-08 Score=84.96 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi 120 (195)
+.+++.+. .++++|++|...+..|. ...+++|.++|++||+++|+|++|+ .+..-. +.. .| .|+
T Consensus 141 ~~l~~~i~-----~~tklV~le~p~Np~~~----~~di~~I~~ia~~~gi~livD~a~a-~~~~~~---~l~-~G--aDi 204 (394)
T PRK07050 141 AGIADLIQ-----PNTRLIWLEAPGSVTME----VPDVPAITAAARARGVVTAIDNTYS-AGLAFK---PFE-HG--VDI 204 (394)
T ss_pred HHHHHhcC-----CCCeEEEEECCCCCCcc----HhhHHHHHHHHHHcCCEEEEECCcc-cccccC---HHH-cC--CeE
Confidence 45555554 36778999988776654 4449999999999999999999987 222111 111 23 365
Q ss_pred h--hhccccCCC--CceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 121 V--TMAKGIANG--FPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 121 ~--~~sK~l~~G--~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+ .++|.+++| .++|++++ ++++.+.++........+.+|+.+..++..|+.+ ...+++..++...+.+.|.
T Consensus 205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl--~~Rl~~~~~~a~~la~~L~ 280 (394)
T PRK07050 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSL--QVRLAAHDRSALEVAEWLK 280 (394)
T ss_pred EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 5 457999854 46787776 5677776654332223345666655444433333 2244555565556666554
No 286
>PRK05968 hypothetical protein; Provisional
Probab=98.79 E-value=6e-08 Score=84.28 Aligned_cols=136 Identities=16% Similarity=0.054 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.+. ++.+|++|.+.+..+.+ ..+++|.++|++||+++|+|++|+.. .... ... .| .|
T Consensus 138 ~~~l~~~i~------~tklV~ie~pt~~~~~~----~dl~~i~~la~~~gi~vivD~a~a~~-~~~~---p~~-~g--~D 200 (389)
T PRK05968 138 EEAVAKALP------GAKLLYLESPTSWVFEL----QDVAALAALAKRHGVVTMIDNSWASP-VFQR---PIT-LG--VD 200 (389)
T ss_pred HHHHHHhcc------cCCEEEEECCCCCCCcH----HHHHHHHHHHHHcCCEEEEECCCcch-hccC---chh-cC--Cc
Confidence 456666542 34578889876654444 45999999999999999999998632 2222 111 23 36
Q ss_pred hhh--hccccCC-C-CceEEEEecHHHHHHhhcccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 120 IVT--MAKGIAN-G-FPMGAVVTTTEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 120 i~~--~sK~l~~-G-~~~g~v~~~~~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++ ++|.+++ | ..+|++++++++++.+..... ......+|+.++.++..|+.+ ....++-.++.+++.+.|++
T Consensus 201 ivv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--~~r~~~~~~~a~~la~~L~~ 278 (389)
T PRK05968 201 LVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--PLRMKAHEASALEIARRLKA 278 (389)
T ss_pred EEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHHh
Confidence 554 4699984 3 567888888888777654321 112345677777777777665 33445555566666666653
No 287
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.78 E-value=3.9e-08 Score=86.17 Aligned_cols=85 Identities=20% Similarity=0.172 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++|++|++.+..|.+.+ +++|+++|++||+++|+||+++ .+... ......+|
T Consensus 132 ~~~l~~~l~-----~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~-~~~~~------~~l~~g~D 195 (418)
T TIGR01326 132 PEEFEKAID-----ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA-TPYLC------RPIDHGAD 195 (418)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-hhhcC------CchhcCCe
Confidence 567777664 35678999999888897776 9999999999999999999986 22211 11223457
Q ss_pred hh--hhccccCC-CCceEEEEecH
Q psy13322 120 IV--TMAKGIAN-GFPMGAVVTTT 140 (195)
Q Consensus 120 i~--~~sK~l~~-G~~~g~v~~~~ 140 (195)
++ +++|.+++ |+++|++++++
T Consensus 196 ivv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 196 IVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred EEEECccccccCCccceEEEEEec
Confidence 66 66799994 89999988854
No 288
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.77 E-value=7.6e-08 Score=84.72 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE--eccccCccccCCCcccccccCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS--DEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~--DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
++++|++.+. +++++|++... +..|.+.+ +++|.++|+++|+++|+ |.+. +|.... .. ..
T Consensus 193 d~~~l~~~i~-----~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~--~g~~~~----~~--~~ 254 (447)
T PRK00451 193 DLEALEAAVD-----DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVS--LGLLKP----PG--EY 254 (447)
T ss_pred CHHHHHHhcC-----CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHH--hccCCC----cc--cC
Confidence 3677777664 36778888775 77898866 99999999999999998 5442 221111 11 22
Q ss_pred Ccchhh-----hccccC-CCCceEEEEecHHHHHHhhc---------------------------cc-cccCCCchH-HH
Q psy13322 117 SPDIVT-----MAKGIA-NGFPMGAVVTTTEIAQVLTK---------------------------AA-HFNTFGGNP-VG 161 (195)
Q Consensus 117 ~pdi~~-----~sK~l~-~G~~~g~v~~~~~i~~~l~~---------------------------~~-~~~t~~~~p-~~ 161 (195)
..|+++ +||.++ +|+.+|++.+++++.+.+.. .. ...+++.+. +.
T Consensus 255 ~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (447)
T PRK00451 255 GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALN 334 (447)
T ss_pred CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHH
Confidence 445553 567776 78889999998888776411 00 111222222 22
Q ss_pred HHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHhhc
Q psy13322 162 CVIASTVLDVIKD---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 162 ~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~L~~ 194 (195)
..++.++++.+.+ ++..+++.++++++.+.|++
T Consensus 335 ~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~ 370 (447)
T PRK00451 335 ALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAE 370 (447)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2333344554422 56778899999999999875
No 289
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.76 E-value=2.2e-08 Score=84.69 Aligned_cols=132 Identities=13% Similarity=-0.005 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322 39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~- 116 (195)
++++|++.+.+.... .+..+|++....+..|.+.+ +++|.++|++||+++++|++|+++.......... ..++
T Consensus 131 d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~-~~~~~ 205 (345)
T cd06450 131 DPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL-DFGIE 205 (345)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH-hcCcc
Confidence 467888888652111 14556666655667888755 9999999999999999999998543221101000 0111
Q ss_pred Ccchh--hhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 117 SPDIV--TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 117 ~pdi~--~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
..|.+ +++|.+++++.+|+++.+ .+++.+++..+....-++..++..++.+++.+.|++
T Consensus 206 ~~d~~~~s~~K~l~~p~g~g~~~~~-------------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~ 266 (345)
T cd06450 206 RVDSISVDPHKYGLVPLGCSAVLVR-------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRA 266 (345)
T ss_pred ccCEEEEchhHhhCCCcchHHHHHH-------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34544 456988766556655444 333333333333222256778888888899888865
No 290
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.74 E-value=1.2e-07 Score=82.08 Aligned_cols=136 Identities=17% Similarity=0.091 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. .++++|++|...+..|.... +++|.++|+++|+++|+||++.. +..+. . . ....|
T Consensus 124 ~~~l~~ai~-----~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~-~~~~~-p--~---~~g~D 187 (377)
T PRK07671 124 LEEVEEAIR-----PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT-PYWQS-P--I---SLGAD 187 (377)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc-cccCC-h--h---hhCCe
Confidence 566666664 36779999999888887765 99999999999999999999863 22222 1 1 22346
Q ss_pred hhh--hccccCC-C-CceEEEEe-cHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVT--MAKGIAN-G-FPMGAVVT-TTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~--~sK~l~~-G-~~~g~v~~-~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++ ++|.++| + .-.|++++ ++++++.+........-..+|..+..++..++.+. -.+++..++...|.+.|+
T Consensus 188 ivv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~--~R~~~~~~na~~la~~L~ 264 (377)
T PRK07671 188 IVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLG--IRMEEHETNSRAIAEFLN 264 (377)
T ss_pred EEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHH--HHHHHHHHHHHHHHHHHH
Confidence 664 4699983 2 33455555 45677766543222222345666665555554442 244556666666666665
No 291
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=98.73 E-value=2.3e-07 Score=80.02 Aligned_cols=133 Identities=12% Similarity=0.088 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~ 117 (195)
+++|++.+.. ++++|++- +..|.... +++|.++|++||++||.|++|+ +|. .|+ . . |--
T Consensus 109 ~~~le~~i~~-----~tk~i~~~---~~~G~~~~----~~~i~~la~~~~i~vIeD~a~a-~g~~~~~~-~--~---g~~ 169 (375)
T PRK11706 109 ETLIEAAITP-----KTRAIVPV---HYAGVACE----MDTIMALAKKHNLFVVEDAAQG-VMSTYKGR-A--L---GTI 169 (375)
T ss_pred HHHHHHhcCC-----CCeEEEEe---CCCCCccC----HHHHHHHHHHcCCEEEEECccc-cccccCCe-e--e---ecC
Confidence 5777777652 44555532 34676554 8899999999999999999998 443 222 1 1 212
Q ss_pred cchhhhc----cccCCCCceEEEEecHHHHHHhhccc-c--------------------ccCCCchHHHHHHHHHHHHhh
Q psy13322 118 PDIVTMA----KGIANGFPMGAVVTTTEIAQVLTKAA-H--------------------FNTFGGNPVGCVIASTVLDVI 172 (195)
Q Consensus 118 pdi~~~s----K~l~~G~~~g~v~~~~~i~~~l~~~~-~--------------------~~t~~~~p~~~~aa~aal~~~ 172 (195)
-|+.+|| |.+++|..+++++.++++.+.+.... + ++++-.+.+.++.+++-|+.+
T Consensus 170 ~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l 249 (375)
T PRK11706 170 GHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAA 249 (375)
T ss_pred cCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHH
Confidence 3677777 99986655566666777776443221 1 112222345555556666655
Q ss_pred cchhHHHHHHHHHHHHHHHhh
Q psy13322 173 KDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 173 ~~~~~~~~l~~~~~~l~~~L~ 193 (195)
++..++-+++.+++.+.|.
T Consensus 250 --~~~~~~R~~~~~~~~~~L~ 268 (375)
T PRK11706 250 --DRINQRRLALWQRYYDALA 268 (375)
T ss_pred --HHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555554
No 292
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.72 E-value=1.4e-07 Score=82.01 Aligned_cols=136 Identities=16% Similarity=0.090 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|...+..|.+.+ +++|.++|+++|+++|+||++... .... .. ....|
T Consensus 128 ~~~l~~~l~-----~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~~-~~~~---~~---~~g~D 191 (390)
T PRK08064 128 LEEVAQNIK-----PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLTP-LLQK---PL---DLGAD 191 (390)
T ss_pred HHHHHHhcC-----CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCcc-cccC---ch---hhCCc
Confidence 455665554 36779999999999998776 999999999999999999998632 1111 11 12346
Q ss_pred hhhh--ccccCC--CCceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 120 IVTM--AKGIAN--GFPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 120 i~~~--sK~l~~--G~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+++. +|.++| |...|+++++ +++.+.+...........+|..+..++..++.+ ...+++..++...+.+.|+
T Consensus 192 ivv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~~R~~~~~~~a~~la~~L~ 268 (390)
T PRK08064 192 VVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--HVRLEHSSETANKIALYLQ 268 (390)
T ss_pred EEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--HHHHHHHHHHHHHHHHHHh
Confidence 6644 699973 3445666654 577777765433333344556555444444332 3344555666666666654
No 293
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.72 E-value=2.1e-07 Score=81.81 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.+. .++++|++|++.+..|.+.+ +++|.++|++||+++|+|++|+ .+.. .....+.+|
T Consensus 138 ~~~l~~ai~-----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a-~~~~------~~pl~~gaD 201 (427)
T PRK05994 138 PASFERAIT-----PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA-SPYL------IRPIEHGAD 201 (427)
T ss_pred HHHHHHhcC-----cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCcc-cccc------CCccccCCc
Confidence 466666664 36779999999999998887 9999999999999999999997 2221 122345678
Q ss_pred hhhh--ccccCC-CCceEEEEe
Q psy13322 120 IVTM--AKGIAN-GFPMGAVVT 138 (195)
Q Consensus 120 i~~~--sK~l~~-G~~~g~v~~ 138 (195)
+++. +|.+++ |-.+|.++.
T Consensus 202 ivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 202 IVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred EEEEcCccccCCCCCcEEEEEE
Confidence 7754 599984 434554443
No 294
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.70 E-value=1.7e-07 Score=81.28 Aligned_cols=135 Identities=16% Similarity=0.043 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. +++++|++|...+..|.+.. +++|.++|++||+++|+|++++.. ..+. . .+...|
T Consensus 124 ~e~l~~ai~-----~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~~-~~~~-p-----~~~gaD 187 (380)
T PRK06176 124 LSQIKKAIK-----PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFATP-YYQN-P-----LLLGAD 187 (380)
T ss_pred HHHHHHhcC-----cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcccc-ccCC-c-----cccCCC
Confidence 456666554 36789999999888898776 999999999999999999998732 2222 1 133457
Q ss_pred hhhh--ccccCC-C-CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322 120 IVTM--AKGIAN-G-FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 i~~~--sK~l~~-G-~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L 192 (195)
++++ +|.+++ | .-.|+++++ +++.+.+...........+|..+......++.+. -.+++..++...+.+.|
T Consensus 188 ivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--~R~~~~~~~a~~la~~L 263 (380)
T PRK06176 188 IVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--LRMEAHQKNALCVAEFL 263 (380)
T ss_pred EEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHH
Confidence 7766 499974 3 345667764 4566655432221112234555444444443331 12333344444444444
No 295
>KOG0633|consensus
Probab=98.69 E-value=2.2e-07 Score=75.81 Aligned_cols=145 Identities=18% Similarity=0.232 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+-+.++.. ..++++.+-+.-+.+|..+- .+.+.++.+.=. +.++++||+|-.|.-.+. ....-.-.|.
T Consensus 148 vdai~evl~~d---s~iK~~F~tSPgNPtg~~ik-~~di~KiLe~p~--nglVVvDEAYidFsg~~S---~~~lV~kYpN 218 (375)
T KOG0633|consen 148 VDAIAEVLELD---SKIKCIFLTSPGNPTGSIIK-EDDILKILEMPD--NGLVVVDEAYIDFSGVES---RMKLVKKYPN 218 (375)
T ss_pred HHHHHHHHhcc---ccceEEEEcCCCCCCccccc-HHHHHHHHhCCC--CcEEEEeeeeEeeccccc---cchHhHhCCc
Confidence 45566666643 37888888888788887665 344544444333 799999999987732222 1122233555
Q ss_pred hh---hhccccC-CCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHh--hcc-hhHHHHHHHHHHHHHHHh
Q psy13322 120 IV---TMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDV--IKD-EELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 120 i~---~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~--~~~-~~~~~~l~~~~~~l~~~L 192 (195)
++ |+||++| .|+++|+...+.++++.+......+. -+..+-.+|++||.- +.. ++.++.+-+.+.+|...|
T Consensus 219 LivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPYN--iS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keL 296 (375)
T KOG0633|consen 219 LIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPYN--ISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKEL 296 (375)
T ss_pred eeehhhhhhhcCcceeEeecccccHHHHHHHHhccCCcc--ccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHh
Confidence 43 7899999 99999999999999998876543332 244556667777762 222 566677777777777777
Q ss_pred hcC
Q psy13322 193 RVV 195 (195)
Q Consensus 193 ~~l 195 (195)
.++
T Consensus 297 t~v 299 (375)
T KOG0633|consen 297 TEV 299 (375)
T ss_pred hcC
Confidence 653
No 296
>PRK05939 hypothetical protein; Provisional
Probab=98.69 E-value=1.6e-07 Score=81.88 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++++|++|.+.+..|.+.+ +++|.++|++||+++|+|++|+.... +.......|
T Consensus 121 ~e~l~~~l~-----~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a~~~~-------~~~~~~gaD 184 (397)
T PRK05939 121 VQNVAAAIR-----PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMTSPWL-------FRPKDVGAS 184 (397)
T ss_pred HHHHHHhCC-----CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcccccc-------cCccccCCE
Confidence 566776664 36778999999999998765 99999999999999999999852111 111122345
Q ss_pred hh--hhccccCC-CCceEEEEec
Q psy13322 120 IV--TMAKGIAN-GFPMGAVVTT 139 (195)
Q Consensus 120 i~--~~sK~l~~-G~~~g~v~~~ 139 (195)
++ +++|.+++ |..+|+++..
T Consensus 185 ivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 185 LVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred EEEecCeecccCCCCeEEEEEec
Confidence 54 56799994 7877777664
No 297
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.69 E-value=4e-07 Score=78.82 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~ 117 (195)
++++++.+. .++++|+ |+ ...|.... +++|.++|++||++||.|++|+ +|. .|+ ..|..
T Consensus 109 ~~~le~~i~-----~~tk~Ii--p~-~~~G~~~d----~~~I~~la~~~~i~vIeDaa~~-~g~~~~~~------~~g~~ 169 (376)
T TIGR02379 109 ETLIESAIT-----HRTKAIV--PV-HYAGVACD----MDTIMALANKHQLFVIEDAAQG-VMSTYKGR------ALGSI 169 (376)
T ss_pred HHHHHHhcC-----cCceEEE--Ee-CCCCCccC----HHHHHHHHHHCCCEEEEECccc-cCCccCCc------ccCCC
Confidence 466777665 2455665 22 34676555 8899999999999999999998 432 232 12323
Q ss_pred cchhhhc----cccCCCCceEEEEec-HHHHHHhhc
Q psy13322 118 PDIVTMA----KGIANGFPMGAVVTT-TEIAQVLTK 148 (195)
Q Consensus 118 pdi~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~ 148 (195)
-|+.+|| |.+++|..+|+++++ +++.+.++.
T Consensus 170 ~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~ 205 (376)
T TIGR02379 170 GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEI 205 (376)
T ss_pred CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHH
Confidence 3777887 999877678888876 577776653
No 298
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=98.65 E-value=1.3e-07 Score=71.10 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=60.5
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCC
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGF 131 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~ 131 (195)
.++++|++++..+++|...+ +++|+++|+++|+++|+||+|.++..... . .......+|+++.| |.|++ .
T Consensus 91 ~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~~~~d~~~~s~~K~~~~-~ 162 (170)
T cd01494 91 PNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPEGGADVVTFSLHKNLGG-E 162 (170)
T ss_pred CceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEeccccccccccc-c--cccccccCCEEEEEcccccCC-C
Confidence 48899999999999998776 69999999999999999999997655432 1 11123457888887 99986 5
Q ss_pred ceEEEEec
Q psy13322 132 PMGAVVTT 139 (195)
Q Consensus 132 ~~g~v~~~ 139 (195)
++|+++++
T Consensus 163 ~~G~l~~~ 170 (170)
T cd01494 163 GGGVVIVK 170 (170)
T ss_pred ceEEEEeC
Confidence 67887753
No 299
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=6.7e-07 Score=78.17 Aligned_cols=139 Identities=16% Similarity=0.260 Sum_probs=99.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++++. +++.+|.+.-+.+..|.+.+ +++|.++|+++|+++++|=+|+ ++. ....-..+..|
T Consensus 152 ~~~~~~~i~-----~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq~-~~h-----~~idv~~l~~D 216 (405)
T COG0520 152 LDALEKLIT-----PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQA-AGH-----LPIDVQELGCD 216 (405)
T ss_pred HHHHHHhcC-----CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECccc-cCc-----cCCCchhcCCC
Confidence 455665443 47889999999999999998 9999999999999999999987 422 12322345678
Q ss_pred hhhhc--cccC--CCCceEEEEecHHHHHHhhccc------------cccCC----------CchHHHHHHHHHHHHhhc
Q psy13322 120 IVTMA--KGIA--NGFPMGAVVTTTEIAQVLTKAA------------HFNTF----------GGNPVGCVIASTVLDVIK 173 (195)
Q Consensus 120 i~~~s--K~l~--~G~~~g~v~~~~~i~~~l~~~~------------~~~t~----------~~~p~~~~aa~aal~~~~ 173 (195)
+++|| |.|. +| +|.+.+++++.+.+.+.. ...++ ..|..+..+..++++.++
T Consensus 217 f~afsgHKwl~gP~G--iGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~ 294 (405)
T COG0520 217 FLAFSGHKWLLGPTG--IGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLL 294 (405)
T ss_pred EEEEcccccccCCCc--eEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHHH
Confidence 99998 9665 46 899999999988874321 00111 123445555567777665
Q ss_pred c---hhHHHHHHHHHHHHHHHhhcC
Q psy13322 174 D---EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 174 ~---~~~~~~l~~~~~~l~~~L~~l 195 (195)
+ +++.++.++..+++.+.|+++
T Consensus 295 ~ig~~~i~~~e~~L~~~~~~~L~~~ 319 (405)
T COG0520 295 EIGMEAIEAHERELTEYLLEGLSEL 319 (405)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 567788889999999988764
No 300
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.63 E-value=3.8e-07 Score=79.43 Aligned_cols=135 Identities=11% Similarity=0.037 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi 120 (195)
+.+++.+. .++++|++|++.+..+.+.+ +++|.++|+++|+++|+|++++.... +....+-.|+
T Consensus 140 e~l~~al~-----~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a~p~~-------~~pl~~GaDi 203 (395)
T PRK05967 140 AGIAKLMR-----PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWATPLY-------FRPLDFGVDI 203 (395)
T ss_pred HHHHHhcC-----cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCccCcee-------cChhHcCCCE
Confidence 45666654 35779999998887665444 99999999999999999999873211 1111233565
Q ss_pred h--hhccccCC--CCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 121 V--TMAKGIAN--GFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 121 ~--~~sK~l~~--G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
+ ..+|.++| ...+|+++.++++.+.+...........+|+.+...+..|+.+. -.+++-.++...+.+.|+
T Consensus 204 vv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~--lR~~~~~~na~~lA~~L~ 278 (395)
T PRK05967 204 SIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMG--IRLEHHRKSALEIARWLE 278 (395)
T ss_pred EEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHH
Confidence 5 44699985 35677777777665555422222223356777666665555542 223444445555544443
No 301
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.62 E-value=8.7e-07 Score=76.64 Aligned_cols=135 Identities=21% Similarity=0.217 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~~p 118 (195)
++++++.+. .++++|+ |+ ...|.... +++|.++|++||+++|+|++|+ |....|. . ....+.
T Consensus 111 ~~~l~~~i~-----~~tkav~--~~-~~~G~~~d----~~~i~~~a~~~gi~vi~D~a~a~g~~~~~~-~--~g~~g~-- 173 (379)
T PRK11658 111 PEAIEAAIT-----PRTKAII--PV-HYAGAPAD----LDAIRAIGERYGIPVIEDAAHAVGTYYKGR-H--IGARGT-- 173 (379)
T ss_pred HHHHHHhcc-----cCCeEEE--Ee-CCCCCcCC----HHHHHHHHHHcCCeEEEECCCccCCeECCe-e--cCCCCC--
Confidence 567777665 2455665 22 23566554 8899999999999999999998 3333332 1 112233
Q ss_pred chhhhc--cccCCCCceEEEEec-HHHHHHhhccc-cc-----------------------cCCCchHHHHHHHHHHHHh
Q psy13322 119 DIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAA-HF-----------------------NTFGGNPVGCVIASTVLDV 171 (195)
Q Consensus 119 di~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~-~~-----------------------~t~~~~p~~~~aa~aal~~ 171 (195)
++.+|+ |.+++ ..+|+++++ +++.+.++... ++ +.+..+.+..+.++..++.
T Consensus 174 ~~~Sf~~~K~l~~-g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~ 252 (379)
T PRK11658 174 AIFSFHAIKNITC-AEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQAEVLTPGYKYNLADINAAIALVQLAK 252 (379)
T ss_pred EEEeCCCCCcCcc-cCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcceeeccccccCcCHHHHHHHHHHHHH
Confidence 566665 77754 356777775 56666554321 11 1111233444444444443
Q ss_pred hcchhHHHHHHHHHHHHHHHhhc
Q psy13322 172 IKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 172 ~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+ ++..++-+++.+++.+.|+.
T Consensus 253 l--~~~~~~r~~~a~~~~~~L~~ 273 (379)
T PRK11658 253 L--EALNARRREIAARYLQALAD 273 (379)
T ss_pred H--HHHHHHHHHHHHHHHHHhcC
Confidence 3 44556666777777777654
No 302
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.62 E-value=4.1e-07 Score=80.26 Aligned_cols=83 Identities=18% Similarity=0.097 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++.+++.+. .++++|++|.+.++.|.+.+ +++|.++|++||+++|+|++|+ .+.... . .....|
T Consensus 145 ~e~l~~ai~-----~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a-~~~~~~---p---l~~GaD 208 (436)
T PRK07812 145 LDAWRAAVR-----PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA-TPYLIR---P---LEHGAD 208 (436)
T ss_pred HHHHHHhCC-----CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---c---hhcCCC
Confidence 566666554 35779999999999999888 9999999999999999999986 222111 1 123456
Q ss_pred hhh--hccccCC-C-CceEEEEe
Q psy13322 120 IVT--MAKGIAN-G-FPMGAVVT 138 (195)
Q Consensus 120 i~~--~sK~l~~-G-~~~g~v~~ 138 (195)
+++ ++|.+++ | .-.|.++.
T Consensus 209 ivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 209 IVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred EEEEecccccCCCCCeEEEEEEc
Confidence 654 4699983 3 34444443
No 303
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.60 E-value=4e-07 Score=79.27 Aligned_cols=136 Identities=14% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC--CEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN--GLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~--~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
.+.+++.|+ +++++|++|++.++.|.+.+ +++|.++|+++| +++|+|.+++ . |. . +.-..+-
T Consensus 137 ~~~l~~~l~-----~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a-~---p~-~--~~pl~~G 200 (395)
T PRK08114 137 GADIAKLIQ-----PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA-A---GV-L--FKALDFG 200 (395)
T ss_pred HHHHHHhcC-----CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc-c---cc-c--cCHHHcC
Confidence 356777665 36789999999999999988 999999999984 9999999986 2 21 1 2223345
Q ss_pred cchhhhc--cccCCC--CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 118 PDIVTMA--KGIANG--FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 118 pdi~~~s--K~l~~G--~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
.|+++.| |.++|. .-+|.++.++++.+.+...........+|+.+...+..|+.+. -.+++-.++...+.+.|+
T Consensus 201 aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~--lR~~~~~~na~~va~~L~ 278 (395)
T PRK08114 201 IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLG--VRLRQHEESSLKVAEWLA 278 (395)
T ss_pred CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHHH
Confidence 6777665 999853 4667777777665555432222222446777776666665542 234555555555555554
No 304
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.54 E-value=8.1e-07 Score=78.26 Aligned_cols=83 Identities=22% Similarity=0.173 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
++++++.+. +++++|++|.+.+..|.+.. +++|.++|++||+++|+|++++ .+.... .. ....|
T Consensus 139 ~e~l~~ai~-----~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a-~~~~~~---pl---~~gaD 202 (431)
T PRK08248 139 PENFEAAIT-----DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA-SPYLLR---PI---EHGAD 202 (431)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC-ccccCC---hh---HcCCC
Confidence 566666664 35778999988888898887 8999999999999999999976 211111 11 23456
Q ss_pred hhhh--ccccC-CCCceEEEEe
Q psy13322 120 IVTM--AKGIA-NGFPMGAVVT 138 (195)
Q Consensus 120 i~~~--sK~l~-~G~~~g~v~~ 138 (195)
+++. +|.++ .|.++|++++
T Consensus 203 ivv~S~tK~lgg~g~~~Gg~v~ 224 (431)
T PRK08248 203 IVVHSATKFIGGHGTSIGGVIV 224 (431)
T ss_pred EEEEcCccccCCCCCceEEEEE
Confidence 6654 59999 4666666555
No 305
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.54 E-value=7.9e-07 Score=76.52 Aligned_cols=139 Identities=18% Similarity=0.181 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|++.|. +++..|-+--+.++.|.+.| +++|.++|+++++++.+|=||+ +|+.- .....+..
T Consensus 130 ~~e~L~~al~-----~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gkip-----i~~~~~~v 194 (386)
T COG1104 130 DLEQLEEALR-----PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGKIP-----IDLEELGV 194 (386)
T ss_pred cHHHHHHhcC-----CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCcee-----ccccccCc
Confidence 3688888877 46778999999999999999 9999999999999999999998 75542 22222347
Q ss_pred chhhhc--cccC-CCCceEEEEecHHHHH-Hhhcc-c--cccCC-CchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q psy13322 119 DIVTMA--KGIA-NGFPMGAVVTTTEIAQ-VLTKA-A--HFNTF-GGNPVGCVIASTVLDVIKD--EELQYNCKQVSAQI 188 (195)
Q Consensus 119 di~~~s--K~l~-~G~~~g~v~~~~~i~~-~l~~~-~--~~~t~-~~~p~~~~aa~aal~~~~~--~~~~~~l~~~~~~l 188 (195)
|+++|| |-.| .| +|++..++.+.- .+... . .+.-. ..|..+.++..+|++...+ +....++.+.+++|
T Consensus 195 D~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l 272 (386)
T COG1104 195 DLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEELEEENARLRKLRDRL 272 (386)
T ss_pred ceEEeehhhccCCCc--eEEEEECCCCccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899997 6555 45 777777654321 11111 1 11111 1266677777777776532 56778899999999
Q ss_pred HHHhhc
Q psy13322 189 IGYLRV 194 (195)
Q Consensus 189 ~~~L~~ 194 (195)
.+.|.+
T Consensus 273 ~~~l~~ 278 (386)
T COG1104 273 EDGLLE 278 (386)
T ss_pred HHHHHh
Confidence 998874
No 306
>KOG0634|consensus
Probab=98.53 E-value=2.7e-06 Score=73.48 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCC----CCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcccc---CC-----
Q psy13322 40 YEQLVNAFQYNVPI----TGAA-ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRT---GD----- 106 (195)
Q Consensus 40 ~~~l~~~l~~~~~~----~~~a-avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~---G~----- 106 (195)
.|.|++.+.+..+. .+.. .--|=+-|+.+|... +.+-=++|.+|++|||+++|-||+|-=+-+. +.
T Consensus 184 pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LArKyDfLIVeDdpYy~Lq~~~y~~~~~~~~ 262 (472)
T KOG0634|consen 184 PESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLARKYDFLIVEDDPYYFLQMNTYNPSLELES 262 (472)
T ss_pred HHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHHHHcCEEEEecCccceeeccccCCCccccC
Confidence 68888888764332 1222 333444677889654 5677899999999999999999999743222 11
Q ss_pred Cccc-----------ccccCCCc---chhhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322 107 NYWG-----------FEMHGVSP---DIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI 172 (195)
Q Consensus 107 ~~~~-----------~~~~~~~p---di~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~ 172 (195)
..+. +...+..- ..-+|||-++.|+|+||+.+++.+++.....+...|.+.+-+++....+.|+..
T Consensus 263 p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~ae~~t~~pSg~sq~iv~a~l~~w 342 (472)
T KOG0634|consen 263 PAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLAEVATSGPSGFSQGIVYAMLKRW 342 (472)
T ss_pred ccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhcceeecCcccccHHHHHHHHHHH
Confidence 0011 00011111 234889999999999999999987777666666667777788888888999877
Q ss_pred cchh-------HHHHHHHHHHHHHHHhh
Q psy13322 173 KDEE-------LQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 173 ~~~~-------~~~~l~~~~~~l~~~L~ 193 (195)
.+++ ++..+..++..+...|+
T Consensus 343 gqeG~~~wi~~l~~~Yt~Rrn~~l~Al~ 370 (472)
T KOG0634|consen 343 GQEGFLRWIQHLRSSYTERRNALLSALD 370 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5543 33444455555555544
No 307
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.53 E-value=3.1e-06 Score=73.01 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCcccccccCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMHGV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~~~ 116 (195)
+++++++.+.+..+ .++.+|++- +..|...+ +++|.++|++||++||.|++|+ +| +.|+ ..|.
T Consensus 106 d~~~l~~~i~~~~~-~~t~~v~~~---~~~G~~~~----~~~i~~l~~~~~~~lI~D~a~a-~g~~~~~~------~~g~ 170 (380)
T TIGR03588 106 DEDALEKKLAAAKG-KLPKAIVPV---DFAGKSVD----MQAIAALAKKHGLKIIEDASHA-LGAEYGGK------PVGN 170 (380)
T ss_pred CHHHHHHHhhcccC-CCceEEEEe---CCCCccCC----HHHHHHHHHHcCCEEEEECCCc-ccCccCCE------eCCC
Confidence 36788888874321 245566532 23565554 8999999999999999999998 43 2222 1222
Q ss_pred --Ccchhhhc----cccCCCCceEEEEec-HHHHHHhhccc-c------------------------ccCCCchHHHHHH
Q psy13322 117 --SPDIVTMA----KGIANGFPMGAVVTT-TEIAQVLTKAA-H------------------------FNTFGGNPVGCVI 164 (195)
Q Consensus 117 --~pdi~~~s----K~l~~G~~~g~v~~~-~~i~~~l~~~~-~------------------------~~t~~~~p~~~~a 164 (195)
--|+.++| |.+++| .+|++++. +++.+.++... + ++.+..+.+..+.
T Consensus 171 ~~~~d~~~~S~~~~K~~~~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~ 249 (380)
T TIGR03588 171 CRYADATVFSFHPVKIITTA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDEGPWYYEQQELGFNYRMTDIQAAL 249 (380)
T ss_pred ccccceEEEecCCCCccccc-CceEEEECCHHHHHHHHHHHHCCCCCCcccccccccCcceeeeeccccccCccHHHHHH
Confidence 33777765 888744 35666664 55666543210 0 0112224455555
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 165 ASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 165 a~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
+++.|+.+ ++..++-+++.+++.+.|..
T Consensus 250 g~~qL~~l--~~~~~~r~~~~~~~~~~L~~ 277 (380)
T TIGR03588 250 GLSQLKKL--DRFVAKRREIAARYDRLLKD 277 (380)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHhcC
Confidence 55556554 45667777778888887764
No 308
>PRK04311 selenocysteine synthase; Provisional
Probab=98.50 E-value=2.1e-06 Score=76.30 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCC--CCC--cccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC-----Cccc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQG--VSG--VKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD-----NYWG 110 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s--~~G--~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~-----~~~~ 110 (195)
++++++.|. .++++|+++...+ +.| ..++ +++|.++|++||+++|+|....-++-.+. ....
T Consensus 206 ~~dle~aI~-----~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~ 276 (464)
T PRK04311 206 LRDYEQAIN-----ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTV 276 (464)
T ss_pred HHHHHHhcC-----ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCch
Confidence 567777775 2566777776543 445 3344 99999999999999999985322221111 0000
Q ss_pred ccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhc
Q psy13322 111 FEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTK 148 (195)
Q Consensus 111 ~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~ 148 (195)
......-.|++++| |.++|. ..|++++++++++.+.+
T Consensus 277 ~~~l~~GaDiv~fSg~K~LgGp-~~G~i~g~~~li~~l~~ 315 (464)
T PRK04311 277 QELLAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIARLKK 315 (464)
T ss_pred hhHHhcCCcEEEecCcccccCC-ceEEEEEcHHHHHHHhh
Confidence 11122456899997 999854 37888899998887764
No 309
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=98.47 E-value=4.4e-06 Score=73.70 Aligned_cols=153 Identities=11% Similarity=-0.028 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-----------ccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-----------RTGDN 107 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-----------r~G~~ 107 (195)
+++.|++.|.+..+ .+++.|.++-..+..|-.+.+.+.++++.++|++||+.||.|=++. +| +.|+.
T Consensus 162 D~d~Le~~I~~~~~-~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra-~gna~fI~~re~~y~~~~ 239 (460)
T PRK13237 162 DLDKLQALIDEVGA-ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC-VENAYFIKEREEGYQDKS 239 (460)
T ss_pred CHHHHHHHhccccC-CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch-hcChhhhcccccccCCCc
Confidence 36888998875433 3555555555445554466777889999999999999999999987 44 11110
Q ss_pred ccc-ccccCCCcchhhhc--cccCCCCceEEEEec-HHHHHHhhccc--c-c-cCCCchHH-HHHHHHHHHHhhcchhHH
Q psy13322 108 YWG-FEMHGVSPDIVTMA--KGIANGFPMGAVVTT-TEIAQVLTKAA--H-F-NTFGGNPV-GCVIASTVLDVIKDEELQ 178 (195)
Q Consensus 108 ~~~-~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~-~~i~~~l~~~~--~-~-~t~~~~p~-~~~aa~aal~~~~~~~~~ 178 (195)
..- .....-..|+++|| |.++.+. .|+++++ +++.+.++... + + .|+++-+- -+.|....|+...+.+..
T Consensus 240 i~ei~~e~~s~aD~~t~S~~K~~~~~~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~~y~ 318 (460)
T PRK13237 240 IKEIVHEMFSYADGCTMSGKKDCLVNI-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQYEYI 318 (460)
T ss_pred HhHHhhhccCcCcEEEEeCCCCCCCCC-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchHHHH
Confidence 000 00011134777776 6665321 3666665 46888877652 1 2 25544222 333333345544444555
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++--++.++|.+.|++
T Consensus 319 ~~ri~~~~~l~~~L~~ 334 (460)
T PRK13237 319 EHRVGQVRYLGEKLLA 334 (460)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566777777653
No 310
>PRK02769 histidine decarboxylase; Provisional
Probab=98.45 E-value=7.6e-06 Score=71.04 Aligned_cols=147 Identities=14% Similarity=0.232 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC---CEEEEeccccCcccc---CCCccccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN---GLFISDEVQTGFGRT---GDNYWGFE 112 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~---~llI~DEv~~g~gr~---G~~~~~~~ 112 (195)
++++|++.|++.+ .++.+|++--...+.|.+-+ +++|.++|++|| +++.+|=+|+|+-.. ....+.+.
T Consensus 146 d~~~L~~~i~~~~--~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~ 219 (380)
T PRK02769 146 DYDDLISKIKENK--NQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFA 219 (380)
T ss_pred cHHHHHHHHHhCC--CCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCcc
Confidence 4788888888652 36778888888888999888 999999999998 699999999864211 00001111
Q ss_pred ccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcc---hhHHHH
Q psy13322 113 MHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKD---EELQYN 180 (195)
Q Consensus 113 ~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~---~~~~~~ 180 (195)
...|.+++| |-+++-.+.|.++.+++..+.+.... ...|+.+ |..+.++..++|+.+.. ++..++
T Consensus 220 ---~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~ 296 (380)
T PRK02769 220 ---DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQH 296 (380)
T ss_pred ---CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 146778886 86664467899999887665543211 1123333 33566777777877654 456778
Q ss_pred HHHHHHHHHHHhhc
Q psy13322 181 CKQVSAQIIGYLRV 194 (195)
Q Consensus 181 l~~~~~~l~~~L~~ 194 (195)
..++.+++.++|++
T Consensus 297 ~~~la~~l~~~L~~ 310 (380)
T PRK02769 297 CLDMAQYAVDRLQA 310 (380)
T ss_pred HHHHHHHHHHHHHh
Confidence 88889999998864
No 311
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.45 E-value=2.1e-06 Score=74.66 Aligned_cols=137 Identities=17% Similarity=0.094 Sum_probs=84.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-CEEEEeccccCccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-GLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++.|++.++ .++++|++|++.+....+.. |++|+++++++| +++|+|...+.. - .+..+..-.
T Consensus 130 ~~~l~~~l~-----~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~atp----~---~~~pL~~Ga 193 (386)
T PF01053_consen 130 LEALEAALR-----PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTFATP----Y---NQNPLELGA 193 (386)
T ss_dssp HHHHHHHHC-----TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTTTHT----T---TC-GGGGT-
T ss_pred HHHHHhhcc-----ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccccce----e---eeccCcCCc
Confidence 678888887 37889999999988766666 999999999998 999999886421 1 112122335
Q ss_pred chhhh--ccccCC-C-CceEEEEec--HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Q psy13322 119 DIVTM--AKGIAN-G-FPMGAVVTT--TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 119 di~~~--sK~l~~-G-~~~g~v~~~--~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L 192 (195)
||++. +|.++| | .-+|+++++ +++.+.+...........+|..+...+..|+.+ .-.+++..++...+.+.|
T Consensus 194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl--~~R~~~~~~nA~~lA~~L 271 (386)
T PF01053_consen 194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTL--PLRMERQNENAEALAEFL 271 (386)
T ss_dssp SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHH
T ss_pred eEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHH
Confidence 76655 599984 2 456777765 367776654322222233566666555555544 234566666777777666
Q ss_pred hc
Q psy13322 193 RV 194 (195)
Q Consensus 193 ~~ 194 (195)
++
T Consensus 272 ~~ 273 (386)
T PF01053_consen 272 EE 273 (386)
T ss_dssp HT
T ss_pred Hh
Confidence 53
No 312
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=98.43 E-value=3.5e-06 Score=74.70 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEccc--CCCCCc--ccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-cccc---
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESI--QGVSGV--KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGF--- 111 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv--~s~~G~--~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~--- 111 (195)
++++++.+. .++++|+++.. +++.|. .++ +++|.++|++||+++|+|-. .|..+.. .++.
T Consensus 201 l~dle~aI~-----~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~~---sG~l~~~~~~gl~~~ 268 (454)
T TIGR00474 201 LKDYEDAIT-----ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDLG---SGSLVDLSRYGLPDE 268 (454)
T ss_pred HHHHHHhcC-----cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEECC---CcccccchhccCCCC
Confidence 567777664 24566666554 445563 555 99999999999999999953 3332210 0111
Q ss_pred ----cccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhcc
Q psy13322 112 ----EMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKA 149 (195)
Q Consensus 112 ----~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~ 149 (195)
.......|++++| |.++|. ..|++++++++++.+.+.
T Consensus 269 p~~~~~~~~GaDiv~fSg~K~LgGp-~~G~i~g~~~~i~~l~~~ 311 (454)
T TIGR00474 269 PTVQEVIAAGVDLVTFSGDKLLGGP-QAGIIVGKKELIERLKKN 311 (454)
T ss_pred cccccHhHcCCCEEEecCccccCCC-eEEEEEECHHHHHhhhhc
Confidence 1113456899998 999754 378888999887766543
No 313
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.42 E-value=2.1e-06 Score=75.65 Aligned_cols=137 Identities=14% Similarity=0.095 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.++++|. .++++|++|..-+..+.++. +++|.++|++||+++|+|++++ +. ..+..+..-.|
T Consensus 137 ~~~l~~~I~-----~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~----tP---~~~~pl~~GAD 200 (432)
T PRK06702 137 ADEIVALAN-----DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA----TP---YLCQAFEHGAN 200 (432)
T ss_pred HHHHHHhCC-----cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC----ch---hhCChhhcCCC
Confidence 466777775 35678999997666676666 9999999999999999999964 11 11222233456
Q ss_pred hh--hhccccCC-CCce-EEEEecH----------HHH---------------------HHhh-ccccccCCCchHHHHH
Q psy13322 120 IV--TMAKGIAN-GFPM-GAVVTTT----------EIA---------------------QVLT-KAAHFNTFGGNPVGCV 163 (195)
Q Consensus 120 i~--~~sK~l~~-G~~~-g~v~~~~----------~i~---------------------~~l~-~~~~~~t~~~~p~~~~ 163 (195)
|+ .++|.++| +.-+ |.++... ++. .... .....+....+|+.+.
T Consensus 201 Ivv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~ 280 (432)
T PRK06702 201 IIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAY 280 (432)
T ss_pred EEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHH
Confidence 55 55798874 2333 3333211 111 0001 1112233467888888
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 164 IASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 164 aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.++..|+.+. ..+++-.+|...+.+.|++
T Consensus 281 l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~ 309 (432)
T PRK06702 281 ISNIGLETLH--LRMERHSENALAVAKWLAD 309 (432)
T ss_pred HHHhccCcHH--HHHHHHHHHHHHHHHHHHh
Confidence 8887777653 3445556777777777653
No 314
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=98.42 E-value=1.2e-05 Score=69.53 Aligned_cols=141 Identities=18% Similarity=0.245 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+++++.|++..+-+-++.+-.|+ ++|.+-+ +++|.++|++||+++|+|=|-+ +| |. .+-...+| .|
T Consensus 119 p~~v~~~L~~~~~~~~V~~vH~ET---STGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~-~~~vd~wg--iD 185 (383)
T COG0075 119 PEEVEEALDKDPDIKAVAVVHNET---STGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GE-PLKVDEWG--ID 185 (383)
T ss_pred HHHHHHHHhcCCCccEEEEEeccC---cccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--Cc-ccchhhcC--cc
Confidence 689999999653212344444454 3677776 9999999999999999998865 54 32 22234444 35
Q ss_pred hhhhc--cccC--CCCceEEEEecHHHHHHhhccc------------------cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322 120 IVTMA--KGIA--NGFPMGAVVTTTEIAQVLTKAA------------------HFNTFGGNPVGCVIASTVLDVIKD--- 174 (195)
Q Consensus 120 i~~~s--K~l~--~G~~~g~v~~~~~i~~~l~~~~------------------~~~t~~~~p~~~~aa~aal~~~~~--- 174 (195)
+++.| |+++ .| +|.+..+++..+.+.... ..+-+..+.....+..++|+.+.+
T Consensus 186 v~itgSQK~l~~PPG--la~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGl 263 (383)
T COG0075 186 VAITGSQKALGAPPG--LAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGL 263 (383)
T ss_pred EEEecCchhccCCCc--cceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 55554 9998 46 688888887766665321 112233444566677789998855
Q ss_pred hhHHHHHHHHHHHHHHHhhcC
Q psy13322 175 EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 175 ~~~~~~l~~~~~~l~~~L~~l 195 (195)
++..++-+++++.+++.++++
T Consensus 264 e~r~~RH~~~~~a~r~~~~al 284 (383)
T COG0075 264 EARIARHRRLAEALRAGLEAL 284 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 466677888888888888753
No 315
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.41 E-value=4.1e-06 Score=74.77 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.+. +++++|++.. ++..|.+ ...+++|.++|+++|+++++|.++. ++..|. . ....+ -.|
T Consensus 198 ~e~L~~~i~-----~~t~~V~v~~-Pn~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~-~~~~g~-~-~~~~~--GaD 263 (481)
T PRK04366 198 LEALKAAVG-----EDTAALMLTN-PNTLGLF---ERNILEIAEIVHEAGGLLYYDGANL-NAILGK-A-RPGDM--GFD 263 (481)
T ss_pred HHHHHhhcc-----cCCeEEEEeC-CCCcccc---chHHHHHHHHHHHcCCEEEEEecCh-hhhccc-C-Ccccc--CCC
Confidence 567777664 2566676654 3456753 2349999999999999999999986 333332 1 11222 348
Q ss_pred hhhhc--cccC----CCCc-eEEEEecHHHHHHhhcc-------ccc------------cCCCchHHHHHHHHHHHHhhc
Q psy13322 120 IVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKA-------AHF------------NTFGGNPVGCVIASTVLDVIK 173 (195)
Q Consensus 120 i~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~-------~~~------------~t~~~~p~~~~aa~aal~~~~ 173 (195)
+++++ |.|+ .|-| +|++.+++++.+.+... .+. -.++++.+.+.++...+..+.
T Consensus 264 ~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G 343 (481)
T PRK04366 264 VVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLG 343 (481)
T ss_pred EEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHH
Confidence 77663 8886 2323 66777888777766311 000 011223344455555555554
Q ss_pred chhH---HHHHHHHHHHHHHHhhc
Q psy13322 174 DEEL---QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 174 ~~~~---~~~l~~~~~~l~~~L~~ 194 (195)
.+++ .++..++.++|.++|++
T Consensus 344 ~~Gl~~~a~~~~~~a~~l~~~L~~ 367 (481)
T PRK04366 344 AEGLREVSEDAVLNANYLKARLKD 367 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 4433 45567778899988875
No 316
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=98.41 E-value=6.9e-06 Score=72.57 Aligned_cols=133 Identities=19% Similarity=0.173 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~ 117 (195)
++.+++.+. .++++|++.++.|. . ..+++|+++|++||++||.|++|+ +|- .|+. .|-.
T Consensus 149 ~~~le~~i~-----~~tkaVi~~~~~G~---p----~dl~~I~~la~~~gi~vIeDaa~a-~G~~~~g~~------~G~~ 209 (438)
T PRK15407 149 ASLLEAAVS-----PKTKAIMIAHTLGN---P----FDLAAVKAFCDKHNLWLIEDNCDA-LGSTYDGRM------TGTF 209 (438)
T ss_pred HHHHHHHcC-----cCCeEEEEeCCCCC---h----hhHHHHHHHHHHCCCEEEEECccc-hhhhcCCee------eecc
Confidence 567777664 36778888876552 2 348999999999999999999998 542 2321 1222
Q ss_pred cchhhhc----cccCCCCceEEEEecH-HHHHHhhcc---c------------------------------------ccc
Q psy13322 118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKA---A------------------------------------HFN 153 (195)
Q Consensus 118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~---~------------------------------------~~~ 153 (195)
-|+.+|| |.+++| ..|++++++ ++.+.+... . .++
T Consensus 210 gd~~~fSf~~~k~~~~g-eGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 288 (438)
T PRK15407 210 GDIATLSFYPAHHITMG-EGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY 288 (438)
T ss_pred CceEEEeCCCCCCcccc-CceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc
Confidence 3677665 777744 257888765 454433211 1 112
Q ss_pred CCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhc
Q psy13322 154 TFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 154 t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+..+.+.++.++.-|+.++ +..++-+++.+++.+.|..
T Consensus 289 n~rmsel~AAig~~qL~~l~--~~~~~R~~~a~~y~~~L~~ 327 (438)
T PRK15407 289 NLKITDMQAAIGLAQLEKLP--GFIEARKANFAYLKEGLAS 327 (438)
T ss_pred ccCccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 22345677777777777663 3555566666666666643
No 317
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.40 E-value=3.9e-06 Score=74.04 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.|. +++++|++|.+.+..|.+.+ +++|.++|++||+++|+|.+|+ .+..-. . ..+-.|
T Consensus 139 ~~~l~~~i~-----~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a-~~~~~~---p---l~~GaD 202 (433)
T PRK08134 139 IDGWRAAIR-----PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT-TPYLLR---P---FEHGAD 202 (433)
T ss_pred HHHHHHhcC-----CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc-ccccCC---c---hhcCCC
Confidence 577777776 36778999998888888887 9999999999999999999986 222111 1 134467
Q ss_pred hhhhc--cccCC-CCceEEE
Q psy13322 120 IVTMA--KGIAN-GFPMGAV 136 (195)
Q Consensus 120 i~~~s--K~l~~-G~~~g~v 136 (195)
++++| |.+++ |-.+|.+
T Consensus 203 ~vv~S~tK~l~g~g~~~gG~ 222 (433)
T PRK08134 203 LVYHSATKFLGGHGTAIGGV 222 (433)
T ss_pred EEEeccccccCCCCCceEEE
Confidence 77775 98873 4334443
No 318
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=98.33 E-value=1e-05 Score=71.29 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--cc-CCCcccccccC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RT-GDNYWGFEMHG 115 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~-G~~~~~~~~~~ 115 (195)
+++.|++.|..... .+++.|.++-.....|-.+.+.+.+++++++|++||+.||.|=++. +| .. -.+--++....
T Consensus 155 D~~~Le~aI~~~~~-~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~-~gNA~~I~~re~g~~~~~ 232 (450)
T TIGR02618 155 DLKKLQKLIDEVGA-DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC-VENAYFIKEREQGYEDKS 232 (450)
T ss_pred CHHHHHHHhccccC-cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch-hhChhhhhcccccccCCC
Confidence 37889998875432 2556666666655554467788899999999999999999999886 32 10 00000011001
Q ss_pred C---------CcchhhhccccC-CCCceEEEEe--cHHHHHHhhccc--c-c-cCCCc-hHHHHHHHHHHHHhhcchhHH
Q psy13322 116 V---------SPDIVTMAKGIA-NGFPMGAVVT--TTEIAQVLTKAA--H-F-NTFGG-NPVGCVIASTVLDVIKDEELQ 178 (195)
Q Consensus 116 ~---------~pdi~~~sK~l~-~G~~~g~v~~--~~~i~~~l~~~~--~-~-~t~~~-~p~~~~aa~aal~~~~~~~~~ 178 (195)
+ ..|. +++|+.- ++.|+|.+++ .+++++..+... + + .|+++ .--.+.|...+|+..-+....
T Consensus 233 i~ei~~e~~~~aD~-~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~ 311 (450)
T TIGR02618 233 IAEILKEMMSYADG-CTMSGKKDCLVNIGGFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYI 311 (450)
T ss_pred HHHHHHHHhccCcE-EEEeeccCCCCCCceEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHH
Confidence 1 2244 3444443 2345444444 567888776552 1 2 24443 223444444556554344445
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++-..+.++|.+.|++
T Consensus 312 ~~r~~~a~~La~~L~~ 327 (450)
T TIGR02618 312 EHRVKQVRYLGDKLKA 327 (450)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566777777764
No 319
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.31 E-value=6.8e-06 Score=72.58 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.|. .++++|++|...+..|.+.+ +++|.++|+++|+++|+|.+++ .|.. .... .+| .|
T Consensus 145 ~e~l~~~l~-----~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a-~g~~---~~p~-~~G--aD 208 (437)
T PRK05613 145 PESWQAAVQ-----PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA-TAAL---VRPL-ELG--AD 208 (437)
T ss_pred HHHHHHhCC-----ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc-cccc---cChH-HhC--CC
Confidence 566777665 25668899998877787676 9999999999999999999986 3221 1111 223 48
Q ss_pred hhhhc--cccCC-CCc-eEEEEe
Q psy13322 120 IVTMA--KGIAN-GFP-MGAVVT 138 (195)
Q Consensus 120 i~~~s--K~l~~-G~~-~g~v~~ 138 (195)
++++| |.++| |-- .|+++.
T Consensus 209 ivv~S~~K~l~G~gd~~gG~vv~ 231 (437)
T PRK05613 209 VVVASLTKFYTGNGSGLGGVLID 231 (437)
T ss_pred EEEeeccceecCCCcceeEEEEe
Confidence 88776 98884 433 344543
No 320
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=98.26 E-value=6.6e-06 Score=71.97 Aligned_cols=142 Identities=12% Similarity=0.087 Sum_probs=84.0
Q ss_pred HHHHHHHHhcCCCCCeE---EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc-cccCCCcccccccCC
Q psy13322 41 EQLVNAFQYNVPITGAA---ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF-GRTGDNYWGFEMHGV 116 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~a---avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~-gr~G~~~~~~~~~~~ 116 (195)
+.+++.|+++.. .-+ +||+-|-+ .|.... +++|.++|+++++.|++||+|.+. ++. . + .......
T Consensus 154 ~~i~~~l~~~p~--~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~-~-l-p~~a~~~ 222 (417)
T PF01276_consen 154 EDIEEALKEHPD--AKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEAHGAHFGFH-P-L-PRSALAL 222 (417)
T ss_dssp HHHHHHHHHCTT--CHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-TT-TTGGCS-G-G-GTTCSST
T ss_pred HHHHHHHHhCcc--ccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEccccccccCC-C-C-ccchhhc
Confidence 788999998742 223 57777755 687776 999999999999999999999863 332 2 1 1122334
Q ss_pred Ccc-------hhhhc--cccCCCCceEEEEecHHH---HHHhhccc-cccCCCchHHHHHHHHHHHHhh-cc--hhHHHH
Q psy13322 117 SPD-------IVTMA--KGIANGFPMGAVVTTTEI---AQVLTKAA-HFNTFGGNPVGCVIASTVLDVI-KD--EELQYN 180 (195)
Q Consensus 117 ~pd-------i~~~s--K~l~~G~~~g~v~~~~~i---~~~l~~~~-~~~t~~~~p~~~~aa~aal~~~-~~--~~~~~~ 180 (195)
-.| ++|-| |.+++=-..|++-.+.+. .+.+.... ...|++.+-+-+++.-.+.+.+ .. ..+.++
T Consensus 223 gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~ 302 (417)
T PF01276_consen 223 GADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEE 302 (417)
T ss_dssp TSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 445 77777 888731235666655432 23333322 2334555545555555565655 22 457777
Q ss_pred HHHHHHHHHHHhh
Q psy13322 181 CKQVSAQIIGYLR 193 (195)
Q Consensus 181 l~~~~~~l~~~L~ 193 (195)
..++.+.+++.|+
T Consensus 303 ~i~~a~~~R~~i~ 315 (417)
T PF01276_consen 303 AIELAEEFRKKIN 315 (417)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888873
No 321
>KOG0053|consensus
Probab=98.26 E-value=1.1e-05 Score=69.97 Aligned_cols=107 Identities=19% Similarity=0.088 Sum_probs=76.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCC--
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANG-- 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G-- 130 (195)
++.+|++|++-+....++. +++|+++|+++|+++|+|+...+.- -...+.+-.||++-| |-|+|.
T Consensus 162 ~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~~p~-------~~~pL~lGADIV~hSaTKyi~Ghsd 230 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFGSPY-------NQDPLPLGADIVVHSATKYIGGHSD 230 (409)
T ss_pred CceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcCccc-------ccChhhcCCCEEEEeeeeeecCCcc
Confidence 6889999999888877666 9999999999999999999865331 122233447888665 999964
Q ss_pred CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322 131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI 172 (195)
Q Consensus 131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~ 172 (195)
.-+|.++.+ +++...+.......-+..+|+.+.-....++.+
T Consensus 231 vi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl 273 (409)
T KOG0053|consen 231 VIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTL 273 (409)
T ss_pred eeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcchh
Confidence 456667775 677766655544444566788777666555543
No 322
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.20 E-value=3.3e-05 Score=67.26 Aligned_cols=142 Identities=18% Similarity=0.185 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCcccccccCC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~~~ 116 (195)
-+.+.+++++++++|+ .||+.... .+.+ --+++++++|++.|++|++|=.|. |+.-.|. +. .-+..
T Consensus 156 ID~d~l~~~a~~~kPk----lIi~G~S~-----y~~~-~d~~~~reIad~vga~l~~D~sH~~GLIa~g~--~~-~P~~~ 222 (399)
T PF00464_consen 156 IDYDELEKLAKEHKPK----LIICGASS-----YPRP-IDFKRFREIADEVGAYLMADISHIAGLIAGGL--FP-NPFPY 222 (399)
T ss_dssp B-HHHHHHHHHHH--S----EEEEE-SS-----TSS----HHHHHHHHHHTT-EEEEE-TTTHHHHHTTS--S---GCCT
T ss_pred ECHHHHHHHHhhcCCC----EEEECchh-----ccCc-cCHHHHHHHHHhcCcEEEecccccccceehhe--ec-Ccccc
Confidence 3478999999988654 67776532 1222 227999999999999999999996 4533332 22 12233
Q ss_pred Ccchhhhc--cccCCCCceEEEEec--------------HHHHHHhhccccccCCCchHHHHHHH-HHHHHhhcc---hh
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTT--------------TEIAQVLTKAAHFNTFGGNPVGCVIA-STVLDVIKD---EE 176 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~--------------~~i~~~l~~~~~~~t~~~~p~~~~aa-~aal~~~~~---~~ 176 (195)
.|++|.| |+|.| =+.|.++++ +++.+.+.+..+....+++-....|+ ..+|..... .+
T Consensus 223 -ADvvt~sThKtl~G-PrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~ 300 (399)
T PF00464_consen 223 -ADVVTGSTHKTLRG-PRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKE 300 (399)
T ss_dssp -SSEEEEESSGGG-S-SS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHH
T ss_pred -ceEEEeeccccccc-cCceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHH
Confidence 6888887 99973 345788888 78888888776666665544433333 345554432 35
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy13322 177 LQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 177 ~~~~l~~~~~~l~~~L~~ 194 (195)
..+++-+|.+.|.+.|.+
T Consensus 301 Ya~qVv~NAk~La~~L~~ 318 (399)
T PF00464_consen 301 YAKQVVKNAKALAEALQE 318 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 667777888888887764
No 323
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.15 E-value=3.7e-05 Score=73.78 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
++++|+++++.+. +++++|++--....+|...+ +++|.++|+++|+++++|=++. .+..|. ..-..+-.
T Consensus 652 Dle~L~~~i~~~~--~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~-~a~~~l----~~p~~~Ga 720 (993)
T PLN02414 652 NIEELRKAAEAHK--DNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM-NAQVGL----TSPGFIGA 720 (993)
T ss_pred CHHHHHHHHhccC--CCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH-HhccCc----CCccccCC
Confidence 4789999998653 37888888887777777766 9999999999999999999986 222221 01112446
Q ss_pred chhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-----------c---ccCCC----chHHHHHHHHHHHHhhc
Q psy13322 119 DIVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-----------H---FNTFG----GNPVGCVIASTVLDVIK 173 (195)
Q Consensus 119 di~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-----------~---~~t~~----~~p~~~~aa~aal~~~~ 173 (195)
|++++| |+|+ +|=| +|.+.+++.+...+.... . ..|.. ++.+.+.++..-++.+-
T Consensus 721 D~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi~~lG 800 (993)
T PLN02414 721 DVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYIAMMG 800 (993)
T ss_pred CEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHHHHHC
Confidence 888774 8776 2323 788888888776654211 0 11222 23344444555555554
Q ss_pred chhH---HHHHHHHHHHHHHHhhc
Q psy13322 174 DEEL---QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 174 ~~~~---~~~l~~~~~~l~~~L~~ 194 (195)
.+++ .++...+..|+.++|++
T Consensus 801 ~~Gl~~~a~~a~~nAnYl~~rL~~ 824 (993)
T PLN02414 801 SEGLTDASKIAILNANYMAKRLEG 824 (993)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 67788889999988853
No 324
>KOG1368|consensus
Probab=98.14 E-value=2.4e-05 Score=65.05 Aligned_cols=149 Identities=16% Similarity=0.113 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCC---CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCccccccc
Q psy13322 39 FYEQLVNAFQYNVPI---TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFEMH 114 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~---~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~~~ 114 (195)
.++++|..+...... .....|.+|--....|-.+.|-+|+.++.+||++||+-|=+|-+.- |-- ... .-+...+
T Consensus 135 ~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi-~NAavas-gV~vk~i 212 (384)
T KOG1368|consen 135 DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARI-FNAAVAS-GVPVKKI 212 (384)
T ss_pred eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhh-hhHHHHc-CCCHHHH
Confidence 378999988743311 2578899999888777788899999999999999999888885432 100 000 0011111
Q ss_pred CCCcc--hhhhccccCCCCce-EEEEecHHHHHHhhcc--ccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q psy13322 115 GVSPD--IVTMAKGIANGFPM-GAVVTTTEIAQVLTKA--AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189 (195)
Q Consensus 115 ~~~pd--i~~~sK~l~~G~~~-g~v~~~~~i~~~l~~~--~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~ 189 (195)
.-..| -+++||++|. |+ +.+++++++++....+ ..+..+-.+-+-++|++.+|+.- -.+..+-.++...|.
T Consensus 213 ~~~fDSVsiCLSKglgA--PVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~~~--~~~L~~dHk~A~~lA 288 (384)
T KOG1368|consen 213 CSAFDSVSICLSKGLGA--PVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALDEN--VPLLRADHKRAKELA 288 (384)
T ss_pred HHhhhhhhhhhhccCCC--CcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHHH
Confidence 11234 3588999983 33 5788899887654322 23444433456677777777642 123444445555555
Q ss_pred HHhh
Q psy13322 190 GYLR 193 (195)
Q Consensus 190 ~~L~ 193 (195)
+.++
T Consensus 289 e~~~ 292 (384)
T KOG1368|consen 289 EYIN 292 (384)
T ss_pred HHhc
Confidence 5443
No 325
>PLN02271 serine hydroxymethyltransferase
Probab=98.14 E-value=7.1e-05 Score=67.58 Aligned_cols=143 Identities=14% Similarity=0.082 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
-+.++|++...+. +.+.||+...... +..+ +++++++|+++|++|++|-+|. .|....+.+... .. .
T Consensus 285 IDyd~lek~a~~~----rPKLII~g~Sayp---r~~D---~~~i~eIAdevGA~LmvD~AH~-aGLIa~g~~~sP-~~-~ 351 (586)
T PLN02271 285 IDYDKLEEKALDF----RPKILICGGSSYP---REWD---YARFRQIADKCGAVLMCDMAHI-SGLVAAKECVNP-FD-Y 351 (586)
T ss_pred cCHHHHHHHhhhc----CCeEEEECchhcc---CcCC---HHHHHHHHHHcCCEEEEECccc-ccccccCcCCCC-Cc-C
Confidence 3468888865543 5667888653221 2333 8899999999999999999997 444432111111 11 3
Q ss_pred cchhhhc--cccCCCCceEEEEecHH--------------------HHHHhhccccccCCCchHH-HHHHHHHHHHhhcc
Q psy13322 118 PDIVTMA--KGIANGFPMGAVVTTTE--------------------IAQVLTKAAHFNTFGGNPV-GCVIASTVLDVIKD 174 (195)
Q Consensus 118 pdi~~~s--K~l~~G~~~g~v~~~~~--------------------i~~~l~~~~~~~t~~~~p~-~~~aa~aal~~~~~ 174 (195)
.|+++.+ |+|.| =+.|.++++++ +.+.+....+....+++.. .+++-..+++....
T Consensus 352 aDvvt~TTHKtLrG-PrGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~ 430 (586)
T PLN02271 352 CDIVTSTTHKSLRG-PRGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVAT 430 (586)
T ss_pred CcEEEeCCcccCCC-CCceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhC
Confidence 6887665 99963 12256666543 4444544444444444332 34444456665543
Q ss_pred ---hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 ---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ---~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+..+++-+|.+.|.+.|.+
T Consensus 431 ~efk~Ya~QVv~NAkaLA~~L~~ 453 (586)
T PLN02271 431 PEYKAYMQQVKKNAQALASALLR 453 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888777753
No 326
>KOG2862|consensus
Probab=98.10 E-value=9.2e-05 Score=61.95 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=91.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+|.+++.|.+|.+ .+|.+-=.-+.+|..-+ .++...++|++|++++++|-|-+ +| |. -|.+..+|+ |
T Consensus 131 le~i~~~lsqh~p----~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-lg--gt-~F~mDewgV--D 197 (385)
T KOG2862|consen 131 LEEITEKLSQHKP----KAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-LG--GT-EFEMDEWGV--D 197 (385)
T ss_pred HHHHHHHHHhcCC----ceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-cC--Cc-cceehhhcc--c
Confidence 8999999998754 35555555566776544 36677799999999999999977 54 33 344555554 4
Q ss_pred hh-hhc-cccC--CCCceEEEEecHHHHHHhhccc-----------------------cccCCCchHHHHHHHHHHHHhh
Q psy13322 120 IV-TMA-KGIA--NGFPMGAVVTTTEIAQVLTKAA-----------------------HFNTFGGNPVGCVIASTVLDVI 172 (195)
Q Consensus 120 i~-~~s-K~l~--~G~~~g~v~~~~~i~~~l~~~~-----------------------~~~t~~~~p~~~~aa~aal~~~ 172 (195)
+. |-| |+++ .|+ +-+..++...+.++... ..+.+..+.-..-+..+||..+
T Consensus 198 vaytgSQKaL~aP~GL--siisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I 275 (385)
T KOG2862|consen 198 VAYTGSQKALGAPAGL--SIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALI 275 (385)
T ss_pred EEEecchhhcCCCCCc--ceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHH
Confidence 44 334 9998 574 44777777777775421 0011122333445566777766
Q ss_pred cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322 173 KD---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 173 ~~---~~~~~~l~~~~~~l~~~L~~ 194 (195)
-+ ++..++-++++++++..|++
T Consensus 276 ~eeGL~~~~~rH~e~s~~l~~~l~~ 300 (385)
T KOG2862|consen 276 AEEGLENSWRRHREMSKWLKLSLEA 300 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45667778888899888865
No 327
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.08 E-value=7e-05 Score=62.50 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=76.8
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcch-hhh--ccccCCC
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI-VTM--AKGIANG 130 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi-~~~--sK~l~~G 130 (195)
+.+.+|++.-..+.+|. +.+.+++.+|.+++++||+.||+|-+|. .=+.|- -|+-...-.-+.| .++ ||.==.|
T Consensus 178 e~~g~ic~SRPtNPTGN-VlTdeE~~kldalA~~~giPliIDnAYg-~PFP~i-ifsd~~~~w~~NiilC~SLSK~GLPG 254 (417)
T COG3977 178 ESTGAICVSRPTNPTGN-VLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGI-IFSDATPLWNENIILCMSLSKLGLPG 254 (417)
T ss_pred cccceEEecCCCCCCCC-cccHHHHHHHHHHhhhcCCcEEEecccC-CCCCce-ecccccccCCCCEEEEeehhhcCCCC
Confidence 47889999888888885 5678899999999999999999999976 323332 1110011123343 344 5632278
Q ss_pred CceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHH
Q psy13322 131 FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~ 170 (195)
.++|-++++++++..+.+.....+.+..-++.|.+..+++
T Consensus 255 ~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie 294 (417)
T COG3977 255 SRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIE 294 (417)
T ss_pred cceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhh
Confidence 8999999999999998876544444444455555555554
No 328
>PLN03032 serine decarboxylase; Provisional
Probab=98.07 E-value=0.00015 Score=62.91 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-----CEEEEeccccCccc-c-CC-Cccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-----GLFISDEVQTGFGR-T-GD-NYWG 110 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-----~llI~DEv~~g~gr-~-G~-~~~~ 110 (195)
++++|++.|++.. .++.+|++--..++.|.+-+ +++|.++|++|| +++-+|=++.|+-. . .. ..+.
T Consensus 147 d~~~L~~~i~~~~--~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~ 220 (374)
T PLN03032 147 DYDDLERALAKNR--DKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVT 220 (374)
T ss_pred cHHHHHHHHHHcC--CCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccC
Confidence 4788999888542 25667777667778898877 999999999997 58999999875311 0 00 0011
Q ss_pred ccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcc---hhHH
Q psy13322 111 FEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKD---EELQ 178 (195)
Q Consensus 111 ~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~---~~~~ 178 (195)
+....|.++++ |-++.-.++|+++.++...+.+.... ...|..+ +....++..++|+.+-. .++.
T Consensus 221 ---~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~ 297 (374)
T PLN03032 221 ---FRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDV 297 (374)
T ss_pred ---CCcCCcEEEECcccccCCCcCeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHH
Confidence 11245777776 76654566899999887666553321 1123333 23556666677776644 4566
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++.-++.++|.+.|++
T Consensus 298 ~~~~~~a~~l~~~l~~ 313 (374)
T PLN03032 298 QHCMRNAHYLKDRLTE 313 (374)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7778888888888865
No 329
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.05 E-value=7.2e-05 Score=67.50 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322 39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~- 116 (195)
+++.|++.|++.... .++.+|+.-....+.|.+-+ +++|.++|++||+++.+|=+|+|....-..+ -....++
T Consensus 248 d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~-r~~l~gle 322 (522)
T TIGR03799 248 DVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGATLLSNTY-RHLLKGIE 322 (522)
T ss_pred CHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhHHHhCHHH-HHHhcCch
Confidence 367888877642211 24545555444446788888 9999999999999999999987542211100 0011254
Q ss_pred Ccchhhhc--cccCCCCceEEEEecH-HHHHHhhccc-c----------ccCCCc-hHHHHHHHHHHHHhhcc---hhHH
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAA-H----------FNTFGG-NPVGCVIASTVLDVIKD---EELQ 178 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~-~----------~~t~~~-~p~~~~aa~aal~~~~~---~~~~ 178 (195)
..|.++++ |.+.+-+.+|+++.++ ...+.+.... + ..++.+ -+.......++|+.+.. +.+.
T Consensus 323 ~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii 402 (522)
T TIGR03799 323 RADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLI 402 (522)
T ss_pred hCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 67888887 9776555678888764 4545443311 0 012222 22222345677776643 5677
Q ss_pred HHHHHHHHHHHHHhhc
Q psy13322 179 YNCKQVSAQIIGYLRV 194 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~~ 194 (195)
++..++.++|.+.|++
T Consensus 403 ~~~~~la~~l~~~L~~ 418 (522)
T TIGR03799 403 DQSIEKAKYFADLIQQ 418 (522)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888899888864
No 330
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=98.02 E-value=5.2e-06 Score=69.55 Aligned_cols=150 Identities=14% Similarity=0.083 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCC-CCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNVP-ITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~-~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~ 116 (195)
+++|++.+..... ..++++|.+|-.....|-.+++.++|++|.++|++||+.|.+|=+.-. ....|. ....+--
T Consensus 108 ~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~---~~~e~~~ 184 (290)
T PF01212_consen 108 PEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGV---SLAEIAA 184 (290)
T ss_dssp HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHH---HHHHHHT
T ss_pred HHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccc---cHHHHhh
Confidence 6888888877432 137899999998777666788999999999999999999999955310 000110 1111112
Q ss_pred Ccchhhhc--cccCCCCc-eEEEEecHHHHHHhhccc--cccC--CCchHHHHHH-HHHHHHhhcc-hhHHHHHHHHHHH
Q psy13322 117 SPDIVTMA--KGIANGFP-MGAVVTTTEIAQVLTKAA--HFNT--FGGNPVGCVI-ASTVLDVIKD-EELQYNCKQVSAQ 187 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~-~g~v~~~~~i~~~l~~~~--~~~t--~~~~p~~~~a-a~aal~~~~~-~~~~~~l~~~~~~ 187 (195)
--|++++| |.++ .+ .+.+++++++++...... .+.. ..+-+.++.. -.+++..++. .....+..++.++
T Consensus 185 ~~D~v~~~~tK~~g--~~~Gavl~~~~~~i~~~~~~~k~~gg~~~~~G~~~a~~~~~~~~l~~l~~~~~~~~~~~~~A~~ 262 (290)
T PF01212_consen 185 GADSVSFGGTKNGG--APGGAVLAGNKEFIAKARRQRKRLGGGMRQAGVLAAAELYQFAALRALELWLERARHANAMAKR 262 (290)
T ss_dssp TSSEEEEETTSTT---SSSEEEEEESHHHHHHHHHHHHHHTHHHHHTTHHHHHHHHHHHHHCHEECSHHHHHCHHHHHHC
T ss_pred hCCEEEEEEEcccc--cccceEEEechHHHHHHHHHHHHhccCeeecceeeeechhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34777665 7665 33 466778888554332211 1111 1111111000 0122222222 3456667777888
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
|.+.|+.
T Consensus 263 La~~l~~ 269 (290)
T PF01212_consen 263 LAAGLEA 269 (290)
T ss_dssp HHHCHHE
T ss_pred HHHHHHH
Confidence 8877764
No 331
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=98.02 E-value=0.00019 Score=61.73 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc--cCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR--TGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr--~G~~~~~~~~~~~~ 117 (195)
.+.+++++. .++++||+--++| .... +++|.++|++||+.||-|=+|+ +|- .|+ ..|-.
T Consensus 103 ~~~~~~~i~-----~~t~ai~~~h~~G---~~~d----~~~i~~~~~~~~i~lIeD~a~a-~g~~~~g~------~~G~~ 163 (363)
T PF01041_consen 103 PEALEKAIT-----PKTKAILVVHLFG---NPAD----MDAIRAIARKHGIPLIEDAAQA-FGARYKGR------PVGSF 163 (363)
T ss_dssp HHHHHHHHH-----TTEEEEEEE-GGG---B-------HHHHHHHHHHTT-EEEEE-TTT-TT-EETTE------ETTSS
T ss_pred HHHHHHHhc-----cCccEEEEecCCC---Cccc----HHHHHHHHHHcCCcEEEccccc-cCceeCCE------eccCC
Confidence 688888888 3567888777766 2232 9999999999999999999998 542 222 12334
Q ss_pred cchhhhc----cccCCCCceEEEEecH-HHHHHhhcc---c--------------cccCCCchHHHHHHHHHHHHhhcch
Q psy13322 118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKA---A--------------HFNTFGGNPVGCVIASTVLDVIKDE 175 (195)
Q Consensus 118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~---~--------------~~~t~~~~p~~~~aa~aal~~~~~~ 175 (195)
-|+.+|| |.+++|- .|++++++ ++.+.++.. . .++.+-.+.+..+.+++-|+.+++
T Consensus 164 gd~~~fSf~~~K~i~~ge-GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~L~~- 241 (363)
T PF01041_consen 164 GDIAIFSFHPTKIITTGE-GGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKRLDE- 241 (363)
T ss_dssp SSEEEEESSTTSSS-SSS--EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHTHHH-
T ss_pred CCceEecCCCCCCCcCCC-CeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHHhhh-
Confidence 4777775 9997431 47777764 555555432 1 122344577888878888877643
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy13322 176 ELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 176 ~~~~~l~~~~~~l~~~L~~ 194 (195)
..++-+++.+++.+.|..
T Consensus 242 -~~~~R~~~a~~y~~~L~~ 259 (363)
T PF01041_consen 242 -IIARRRENAQRYREALAG 259 (363)
T ss_dssp -HHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHhc
Confidence 445555666666666654
No 332
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.02 E-value=6.4e-05 Score=65.37 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=79.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCC-C-
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIAN-G- 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~-G- 130 (195)
++.+|++|.+-+..+.... +++|.++|++++ +++|-+++ -...++ ..+.-.|++++| |.++| |
T Consensus 148 ~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~-s~~~~~------pl~~gaDivv~S~tK~i~G~~d 214 (384)
T PRK06434 148 NYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFA-SPYNQN------PLDLGADVVIHSATKYISGHSD 214 (384)
T ss_pred CeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCC-CcccCC------chhcCCCEEEeecccccCCCCC
Confidence 6789999999877776655 999999999998 46699864 222222 224457888886 99975 3
Q ss_pred CceEEEEec-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 131 FPMGAVVTT-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 131 ~~~g~v~~~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
.-.|+++++ +++.+.+...........+|+.++.++..|+.+ +..+++-.++...+.+.|+
T Consensus 215 ~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~~R~~r~~~~a~~~a~~L~ 276 (384)
T PRK06434 215 VVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--GLRMEKHNKNGMELARFLR 276 (384)
T ss_pred ceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 445666664 456565543221222334677666666666555 3455666666666666665
No 333
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=98.02 E-value=9.5e-05 Score=65.07 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc----Cc------cccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT----GF------GRTGDNY 108 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~----g~------gr~G~~~ 108 (195)
++++|++.|+.+++ +++..+.+.-..+..|-.++|.+.+++++++|++||+.+.+|=+.- -| +..|.
T Consensus 168 dl~~le~~I~~~g~-~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~-- 244 (467)
T TIGR02617 168 DLEGLERGIEEVGP-NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNW-- 244 (467)
T ss_pred CHHHHHHHHhhcCC-CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCC--
Confidence 47899999987654 4788888887777667788899999999999999999999996531 01 12221
Q ss_pred cccccc----CCCcchh--hhccccCCCCce-EEEEecHH-HH---HHhhccc----cccCCCc-hHHHHHHHHHHHHhh
Q psy13322 109 WGFEMH----GVSPDIV--TMAKGIANGFPM-GAVVTTTE-IA---QVLTKAA----HFNTFGG-NPVGCVIASTVLDVI 172 (195)
Q Consensus 109 ~~~~~~----~~~pdi~--~~sK~l~~G~~~-g~v~~~~~-i~---~~l~~~~----~~~t~~~-~p~~~~aa~aal~~~ 172 (195)
+.... --..|.+ ++||.++ -|+ |.++++++ +. +..+... ..-|+++ +--.+.|....|+..
T Consensus 245 -si~eI~rE~~~~aDsvt~slsKglg--ApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~ 321 (467)
T TIGR02617 245 -SIEQITRETYKYADMLAMSAKKDAM--VPMGGLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDG 321 (467)
T ss_pred -CHHHHHHHhhccCCEEEEEcCCCCC--CcccceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhc
Confidence 11100 0123544 4568876 333 46666654 33 3333322 3446665 222333333456554
Q ss_pred cchhHHHHHHHHHHHHHHHhhc
Q psy13322 173 KDEELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 173 ~~~~~~~~l~~~~~~l~~~L~~ 194 (195)
-+++.+.+=-...++|.+.|.+
T Consensus 322 ~~~~yl~~ri~qv~yl~~~L~~ 343 (467)
T TIGR02617 322 MNLDWLAYRINQVQYLVNGLEE 343 (467)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433445566666643
No 334
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=0.00016 Score=62.55 Aligned_cols=132 Identities=21% Similarity=0.256 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc--ccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG--RTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g--r~G~~~~~~~~~~~~ 117 (195)
.+.+|+.|. ++++|||.=-.+| ..+. +++|.++|++||++||-|=+|+ +| +.|+. .|-.
T Consensus 112 ~~~ie~aIt-----~~tKAIipVhl~G---~~~d----m~~i~~la~~~~l~vIEDaAqa-~Ga~y~gk~------vGt~ 172 (374)
T COG0399 112 PDLIEAAIT-----PRTKAIIPVHLAG---QPCD----MDAIMALAKRHGLPVIEDAAQA-HGATYKGKK------VGSF 172 (374)
T ss_pred HHHHHHHcc-----cCCeEEEEehhcc---CCCC----HHHHHHHHHHcCCeEEEEcchh-ccCeecCcc------cccc
Confidence 688888887 3566777655554 3443 9999999999999999999998 54 33432 2333
Q ss_pred cchhhhc----cccCCCCceEEEEecH-HHHHHhhccc-c---------------ccCCCchHHHHHHHHHHHHhhcchh
Q psy13322 118 PDIVTMA----KGIANGFPMGAVVTTT-EIAQVLTKAA-H---------------FNTFGGNPVGCVIASTVLDVIKDEE 176 (195)
Q Consensus 118 pdi~~~s----K~l~~G~~~g~v~~~~-~i~~~l~~~~-~---------------~~t~~~~p~~~~aa~aal~~~~~~~ 176 (195)
-|+.+|| |.+++| -.|++++++ ++.+.++... | ++.+-.+-+.++.+++-|+.++ +
T Consensus 173 Gd~~~fSF~~~K~ittg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l~--~ 249 (374)
T COG0399 173 GDIGAFSFHATKNLTTG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERLD--E 249 (374)
T ss_pred cceEEEEecCCCCcccc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHHH--H
Confidence 4677775 999865 557888875 5766654321 1 1222234455555556665553 3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy13322 177 LQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 177 ~~~~l~~~~~~l~~~L~ 193 (195)
+.++=+++.++..+.|+
T Consensus 250 ~~~~R~~~a~~Y~~~l~ 266 (374)
T COG0399 250 INERRREIAQIYAEALK 266 (374)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44555555555555554
No 335
>PRK15029 arginine decarboxylase; Provisional
Probab=97.94 E-value=8.7e-05 Score=69.43 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCC-----CC-eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-c
Q psy13322 40 YEQLVNAFQYNVPI-----TG-AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-E 112 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-----~~-~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~ 112 (195)
.+.+++.|+++... .+ .++||+-|-+ .|.... +++|.++|+++++.|++||+|.+.-.... .+.- .
T Consensus 292 ~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEAhGah~~F~~-~~p~~s 364 (755)
T PRK15029 292 PETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRLHFDEAWYGYARFNP-IYADHY 364 (755)
T ss_pred HHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeEEEECccccccccCc-cccccc
Confidence 37778888765311 11 2566666654 676666 99999999999999999999986433333 2221 1
Q ss_pred cc-----C-CCcc-hhhhc--cccCCCC-ceEEEEecHH---HH-HHhhccc-cccCCCchHHHHHHHHHHHHhhcc---
Q psy13322 113 MH-----G-VSPD-IVTMA--KGIANGF-PMGAVVTTTE---IA-QVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD--- 174 (195)
Q Consensus 113 ~~-----~-~~pd-i~~~s--K~l~~G~-~~g~v~~~~~---i~-~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~--- 174 (195)
.. . .-+| ++|-| |.+++ + ..|++-.+.. +- +.+.... ...|++.+-+-+++.-.+-..++.
T Consensus 365 a~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~~G 443 (755)
T PRK15029 365 AMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG 443 (755)
T ss_pred cccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhhhh
Confidence 11 1 3467 66667 88873 2 2233333211 11 2232222 223444443444444444444432
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ~~~~~~l~~~~~~l~~~L~~ 194 (195)
.++.+++.+....+++.|++
T Consensus 444 ~~l~~~~i~~~~~~r~~l~~ 463 (755)
T PRK15029 444 LSLTQEVIDEAVDFRQAMAR 463 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35566666777777777654
No 336
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=97.92 E-value=8.2e-05 Score=64.23 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccc-cccCC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGF-EMHGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~-~~~~~ 116 (195)
.++.+++.+|... .....=+..+-++..|++. ++++.+++++||+.+|+|..=...-+ . -... +....
T Consensus 144 t~~~d~~~AIne~---ta~llkV~s~~~~f~~~l~-----~~~l~~ia~~~~lpvivD~aSg~~v~--~-e~~l~~~la~ 212 (395)
T COG1921 144 THLKDYELAINEN---TALLLKVHSSNYGFTGMLS-----EEELVEIAHEKGLPVIVDLASGALVD--K-EPDLREALAL 212 (395)
T ss_pred CCHHHHHHHhccC---CeeEEEEeecccccccccc-----HHHHHHHHHHcCCCEEEecCCccccc--c-ccchhHHHhc
Confidence 3468888888854 2444445566556666543 78899999999999999977432211 2 1123 33356
Q ss_pred Ccchhhhc--cccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD 174 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~ 174 (195)
-+|+++|| |.|+ |-..|.+++++++++.+.+......+-.....+++..++|+....
T Consensus 213 GaDLV~~SgdKllg-GPqaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~ 271 (395)
T COG1921 213 GADLVSFSGDKLLG-GPQAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQ 271 (395)
T ss_pred CCCEEEEecchhcC-CCccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcC
Confidence 78999998 8887 345678999999999988765544454567777888888886644
No 337
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.90 E-value=9.5e-05 Score=62.73 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=84.0
Q ss_pred HHHHHHHHHhcC-CCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC--ccccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNV-PITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG--FGRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~-~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g--~gr~G~~~~~~~~~~~ 116 (195)
+++++..+.... .......+++|.-..++| .++|.++|++|.++|++||+.|-+|=+.-. .--.|. ....+.-
T Consensus 114 ~e~v~~~i~~~d~~~~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~---~~~~~~~ 189 (342)
T COG2008 114 PEDVEAAIRPDDIHHAPTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGV---ALKTIKS 189 (342)
T ss_pred HHHHHHhhcCCCcccCCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCC---CHHHHHh
Confidence 577777666411 012566788888777777 567889999999999999999999955321 000111 1112222
Q ss_pred CcchhhhccccCCCCceEEEE-ecHHHHHHhhccc--cccCCCchHHHHHHHHHHHHhhcchhHH--HHHHHHHHHHHHH
Q psy13322 117 SPDIVTMAKGIANGFPMGAVV-TTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQ--YNCKQVSAQIIGY 191 (195)
Q Consensus 117 ~pdi~~~sK~l~~G~~~g~v~-~~~~i~~~l~~~~--~~~t~~~~p~~~~aa~aal~~~~~~~~~--~~l~~~~~~l~~~ 191 (195)
--|+++|+-+-++|+|+++++ ++.+++..+.... .+.-+.-.-+-.++++.+|+.- -.+. .+..++..+|.+.
T Consensus 190 ~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~~~--~~~~~~~Han~mA~~La~~ 267 (342)
T COG2008 190 YVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALEDD--VWRLAADHANAMAARLAEG 267 (342)
T ss_pred hCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHh
Confidence 346666643334457766655 5667777665432 3333333334445555555432 1222 2333347777777
Q ss_pred hh
Q psy13322 192 LR 193 (195)
Q Consensus 192 L~ 193 (195)
|+
T Consensus 268 ~~ 269 (342)
T COG2008 268 LE 269 (342)
T ss_pred hh
Confidence 66
No 338
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00034 Score=60.20 Aligned_cols=144 Identities=16% Similarity=0.150 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-CccccCCCccccccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT-GFGRTGDNYWGFEMH 114 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~-g~gr~G~~~~~~~~~ 114 (195)
..-+.+.++++.++++|+ .||. . +|..--.++ +++++++|++-|++|++|=+|- |+.-.|. + . ...
T Consensus 151 ~~IDyD~~~k~a~e~kPK----~ii~-G-~SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLVA~G~-~-p-~P~ 217 (413)
T COG0112 151 GLIDYDEVEKLAKEVKPK----LIIA-G-GSAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLIAGGV-H-P-NPL 217 (413)
T ss_pred CccCHHHHHHHHHHhCCC----EEEE-C-ccccccccC----HHHHHHHHHHhCceEEehHHHHHHHHhccc-C-C-CCC
Confidence 345579999999988765 3332 2 122222233 9999999999999999999994 6644443 2 1 111
Q ss_pred CCCcchhhhc--cccCCCCceEEEEecH-HHHHHhhccccccCCCchHHHHHHHH-HHHHhhcc---hhHHHHHHHHHHH
Q psy13322 115 GVSPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNPVGCVIAS-TVLDVIKD---EELQYNCKQVSAQ 187 (195)
Q Consensus 115 ~~~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p~~~~aa~-aal~~~~~---~~~~~~l~~~~~~ 187 (195)
. ..|++|-+ |+|-| =+.|.+++++ ++.+.++...+..+.+++-+-..||. .++....+ .+..+++-+|.+.
T Consensus 218 ~-~AdvVTtTTHKTlrG-PrGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAka 295 (413)
T COG0112 218 P-HADVVTTTTHKTLRG-PRGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKA 295 (413)
T ss_pred C-ccceEeCCcccCCCC-CCceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 2 25777665 99974 3557888885 89888888777777776555443333 34444333 3455667777777
Q ss_pred HHHHhhc
Q psy13322 188 IIGYLRV 194 (195)
Q Consensus 188 l~~~L~~ 194 (195)
|.+.|.+
T Consensus 296 LAe~l~~ 302 (413)
T COG0112 296 LAEALKE 302 (413)
T ss_pred HHHHHHH
Confidence 7777653
No 339
>PRK05367 glycine dehydrogenase; Provisional
Probab=97.80 E-value=0.00032 Score=67.42 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=85.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
+++|++.++.+. .++++|++-..-. .|....+ +++|.++|+++|+++++|-++.+ +..+. .... .+-.|
T Consensus 627 ~~~L~~~i~~~~--~~la~V~it~pst-~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~~-al~~l--~~pg--~~GAD 695 (954)
T PRK05367 627 LDDLRAKAEEHA--DNLAAIMITYPST-HGVFEET---IREICEIVHEHGGQVYLDGANMN-AQVGL--ARPG--DIGAD 695 (954)
T ss_pred HHHHHHHHhccC--CCeEEEEEEcCCC-CeeecCC---HHHHHHHHHHcCCEEEEECcChh-hccCC--CChh--hcCCC
Confidence 788888887542 3677776655333 3544333 99999999999999999999962 12221 0011 23458
Q ss_pred hhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-----c---ccCCCchHH----HHHHHHHHHHhhcchhHHHH
Q psy13322 120 IVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-----H---FNTFGGNPV----GCVIASTVLDVIKDEELQYN 180 (195)
Q Consensus 120 i~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-----~---~~t~~~~p~----~~~aa~aal~~~~~~~~~~~ 180 (195)
+++++ |.|+ +|-| +|.+.+++.+...+.... . ..+....+. ....+...+..+-.+++++.
T Consensus 696 i~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~ 775 (954)
T PRK05367 696 VSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQA 775 (954)
T ss_pred EEEecCcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence 88776 9885 2334 667777766665553321 0 111222223 22223333444444666666
Q ss_pred HH---HHHHHHHHHhhc
Q psy13322 181 CK---QVSAQIIGYLRV 194 (195)
Q Consensus 181 l~---~~~~~l~~~L~~ 194 (195)
.+ .+.+|+.++|++
T Consensus 776 a~~~~~~A~Yl~~~L~~ 792 (954)
T PRK05367 776 TEVAILNANYIAKRLKD 792 (954)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66 888899888854
No 340
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.79 E-value=0.00081 Score=55.56 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~ 116 (195)
..|.+-+++..++.+ +.++..++.-+-|..|.+.. -++++++|+++|+.+++.=+|+ .||.- ...-.+
T Consensus 140 e~y~~viee~~~~~g--~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~Grmp-----vs~ke~ 207 (382)
T COG1103 140 EGYAEVIEEVKDEGG--DPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-VGRMP-----VSGKEI 207 (382)
T ss_pred HHHHHHHHHHHhccC--CCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-ecccc-----cccccc
Confidence 456666676666543 35777777778888998777 8999999999999999999998 66643 222356
Q ss_pred Ccchhhhc--cccCCCCceEEEEecHHHHHHhhc
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTK 148 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~ 148 (195)
.+|+++-| |+|+..-|+|.+..++++.+....
T Consensus 208 g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r 241 (382)
T COG1103 208 GADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLR 241 (382)
T ss_pred CCCEEEecCccchhccCCeeEEeehhHHHHHHHh
Confidence 78988877 999965599999999998876543
No 341
>PLN02880 tyrosine decarboxylase
Probab=97.79 E-value=0.00015 Score=65.02 Aligned_cols=151 Identities=18% Similarity=0.100 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322 39 FYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~- 116 (195)
+.+.|++.|++.... ..+.+|+...-....|.+-+ |++|.++|++||+++.+|=+|+|+-..-. .+-....|+
T Consensus 222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iwlHVDaA~gg~~~~~~-~~~~~l~gie 296 (490)
T PLN02880 222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMWFHVDAAYAGSACICP-EYRHYIDGVE 296 (490)
T ss_pred CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCEEEEehhhHHHHHhCH-HHHHHhcCch
Confidence 367888888753211 24556666665556788777 99999999999999999988886532211 001112254
Q ss_pred Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc-c--------ccCC--------CchHHHHHHHHHHHHhhcch
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA-H--------FNTF--------GGNPVGCVIASTVLDVIKDE 175 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~-~--------~~t~--------~~~p~~~~aa~aal~~~~~~ 175 (195)
..|.+++. |.+...+..|.++.++. +.+.+.... + ..++ .+..+.......+|+.+-.+
T Consensus 297 ~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~ 376 (490)
T PLN02880 297 EADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVE 376 (490)
T ss_pred hcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHH
Confidence 56777774 98887778888888742 323332111 0 0000 11112233444556666556
Q ss_pred hHHHHHH---HHHHHHHHHhhc
Q psy13322 176 ELQYNCK---QVSAQIIGYLRV 194 (195)
Q Consensus 176 ~~~~~l~---~~~~~l~~~L~~ 194 (195)
++.++++ ++.+++.+.|++
T Consensus 377 g~~~~i~~~~~lA~~~~~~l~~ 398 (490)
T PLN02880 377 NLQSYIRNHIKLAKEFEQLVAQ 398 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 6777777 888888888764
No 342
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=97.73 E-value=0.00054 Score=60.51 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc------CCEEEEeccccCccc---cCCCcc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN------NGLFISDEVQTGFGR---TGDNYW 109 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~------~~llI~DEv~~g~gr---~G~~~~ 109 (195)
++++|++.|.+ ++.+|++--+.++.|.+-+ +++|.++|+++ |+++.+|=+|+|+-. .++..+
T Consensus 175 d~~~L~~~i~~-----~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~ 245 (431)
T TIGR01788 175 DPEQVVEAVDE-----NTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEW 245 (431)
T ss_pred CHHHHHHHHhh-----CCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchh
Confidence 46888888862 4557888778888999888 99999999999 999999999987421 232111
Q ss_pred cccccCCCcchhhhc--cccCCCCceEEEEecHH--HHHHhhcc---c----cccCCCch-HH-HHHHHHHHHHhhcc--
Q psy13322 110 GFEMHGVSPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKA---A----HFNTFGGN-PV-GCVIASTVLDVIKD-- 174 (195)
Q Consensus 110 ~~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~---~----~~~t~~~~-p~-~~~aa~aal~~~~~-- 174 (195)
.+. ....|.+++| |-+.+-..+|+++.++. +.+.+... . ...+..++ +. ..++...+|..+..
T Consensus 246 ~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G 323 (431)
T TIGR01788 246 DFR--LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREG 323 (431)
T ss_pred hcC--CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHH
Confidence 111 1245677776 86533334788887654 33433211 0 01122211 22 33334445554433
Q ss_pred -hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 -EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 -~~~~~~l~~~~~~l~~~L~~ 194 (195)
++..++..++.++|.++|++
T Consensus 324 ~~~i~~~~~~la~~l~~~L~~ 344 (431)
T TIGR01788 324 YRKIMQNSLDVARYLAEEIAK 344 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 45667788888899888875
No 343
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=97.72 E-value=8.4e-05 Score=63.53 Aligned_cols=84 Identities=21% Similarity=0.171 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pd 119 (195)
.+.+++.++ .+.++|.+|++-+..++++. +++|.++|++||+.+|+|-..+.- + -++-...-.|
T Consensus 137 ~~~~~~aI~-----~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~atp------y-l~rP~~hGAD 200 (426)
T COG2873 137 PENFEAAID-----ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTFATP------Y-LCRPIEHGAD 200 (426)
T ss_pred HHHHHHHhC-----cccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCCCcc------e-ecchhhcCCC
Confidence 578888877 47889999999999998887 999999999999999999875421 1 1222334557
Q ss_pred hhh--hccccCC-CCceEEEEec
Q psy13322 120 IVT--MAKGIAN-GFPMGAVVTT 139 (195)
Q Consensus 120 i~~--~sK~l~~-G~~~g~v~~~ 139 (195)
|++ ++|-+|| |-.+|.+++.
T Consensus 201 IVvHS~TK~igGhGt~iGG~iVD 223 (426)
T COG2873 201 IVVHSATKYIGGHGTAIGGVIVD 223 (426)
T ss_pred EEEEeecccccCCccccceEEEe
Confidence 764 4699984 6666665553
No 344
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00051 Score=59.85 Aligned_cols=126 Identities=15% Similarity=0.047 Sum_probs=79.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccCCC--
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIANG-- 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~~G-- 130 (195)
++.+|.+|+.-+..-.+.. +++|.++++++|+++|+|..... +- -++.+.+-.||++- .|.++|.
T Consensus 149 ~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTfat----P~---~q~PL~~GaDIVvhSaTKyl~GHsD 217 (396)
T COG0626 149 NTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTFAT----PV---LQRPLELGADIVVHSATKYLGGHSD 217 (396)
T ss_pred CceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCccc----cc---ccChhhcCCCEEEEeccccccCCcc
Confidence 7889999999887766666 99999999999999999998652 11 12222334577755 5999964
Q ss_pred CceEEEEecH-HHHHHhhcccc-ccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhh
Q psy13322 131 FPMGAVVTTT-EIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 131 ~~~g~v~~~~-~i~~~l~~~~~-~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~~l~~~L~ 193 (195)
.-+|.+++++ ++.+.+..... ......+|+.+.-.+..|+.+. -.+++..+|...+.+.|+
T Consensus 218 vl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~--~Rm~~~~~nA~~IA~~L~ 280 (396)
T COG0626 218 VLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLA--LRMERHNENALKIAEFLA 280 (396)
T ss_pred eeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHH--HHHHHHHHHHHHHHHHHh
Confidence 3556677666 45554422211 1223346777766666665542 233445555555555543
No 345
>PLN02724 Molybdenum cofactor sulfurase
Probab=97.66 E-value=0.00057 Score=64.85 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=88.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--------CCEEEEeccccCccccCCCcccccccCCCcchhhhc--
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--------NGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA-- 124 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--------~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s-- 124 (195)
++..|.+--+.+..|.+.+ ++.+..+++.. ++++++|=+|+ +|.. .+....+.+|++++|
T Consensus 192 ~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~-~g~~-----piDv~~~~~Dfl~~S~H 261 (805)
T PLN02724 192 AYNLFAFPSECNFSGAKFP----LDLVKLIKDNQHSNFSKSGRWMVLLDAAKG-CGTS-----PPDLSRYPADFVVVSFY 261 (805)
T ss_pred CcceEEEEccccCCCCcCC----HHHHHHHHHhcccccccCcceEEEeehhhh-cCCC-----CCChhhcCCCEEEEecc
Confidence 5568888888889999888 66554444432 35799998887 4322 222224568999998
Q ss_pred cccCCCCceEEEEecHHHHHHhhcccccc-C--------------------C---CchHHHHHHHHHHHHhhcc---hhH
Q psy13322 125 KGIANGFPMGAVVTTTEIAQVLTKAAHFN-T--------------------F---GGNPVGCVIASTVLDVIKD---EEL 177 (195)
Q Consensus 125 K~l~~G~~~g~v~~~~~i~~~l~~~~~~~-t--------------------~---~~~p~~~~aa~aal~~~~~---~~~ 177 (195)
|-+|+=.-+|++.+++++.+.+.....+. + | ..|..++++..++++.+.+ +..
T Consensus 262 K~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I 341 (805)
T PLN02724 262 KIFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAI 341 (805)
T ss_pred eeccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHH
Confidence 97762122789989988777665432111 1 1 2356677777788887754 567
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy13322 178 QYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~l 195 (195)
.++.++..++|.+.|+++
T Consensus 342 ~~~~~~L~~~l~~~L~~l 359 (805)
T PLN02724 342 AMHTWALTHYVANSLRNL 359 (805)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 788999999999988753
No 346
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.66 E-value=0.0014 Score=62.75 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~ 117 (195)
++++|++.+++++ +++++|++..... .|.+.++ +++|.++|+++|.++++|=++.. .+ +. ...-.+.
T Consensus 614 Dle~L~~~i~~~~--~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al~--~l----~~Pg~~G 681 (939)
T TIGR00461 614 DLVDLKNKAEQHG--DELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNAQV--GL----TSPGDLG 681 (939)
T ss_pred CHHHHHHHHhhcC--CceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhhCC--CC----CCccccC
Confidence 4789999998754 4788888766544 5665554 89999999999999999998852 21 11 0111245
Q ss_pred cchhhhc--cccC-----CCCceEEEEecHHHHHHhhcccc----------------ccCCCchHHHHHHHHHHHHhhcc
Q psy13322 118 PDIVTMA--KGIA-----NGFPMGAVVTTTEIAQVLTKAAH----------------FNTFGGNPVGCVIASTVLDVIKD 174 (195)
Q Consensus 118 pdi~~~s--K~l~-----~G~~~g~v~~~~~i~~~l~~~~~----------------~~t~~~~p~~~~aa~aal~~~~~ 174 (195)
.|+++++ |+|+ ||--+|.+.+++.+...+..... ++...++...+..+...|..+-.
T Consensus 682 aDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~ 761 (939)
T TIGR00461 682 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGN 761 (939)
T ss_pred CCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCH
Confidence 6888885 9887 33347888888776655532110 01123344444555666666655
Q ss_pred hhH---HHHHHHHHHHHHHHhhc
Q psy13322 175 EEL---QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ~~~---~~~l~~~~~~l~~~L~~ 194 (195)
+++ .+..-.+..|+.++|++
T Consensus 762 ~GL~~~a~~ailnAnYl~~rL~~ 784 (939)
T TIGR00461 762 EGLPKASVVAILNANYMATRLKD 784 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 544 34455677788888753
No 347
>KOG1549|consensus
Probab=97.58 E-value=0.00037 Score=60.74 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~p 118 (195)
+++.|++.|+ .++.+|.+..|.++.|.+.| +++|.++|+++++.+.+|=+|+ + |+- ...-..+.+
T Consensus 170 d~~~~~~~i~-----~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~i--~vDV~eln~ 234 (428)
T KOG1549|consen 170 DISKLREAIR-----SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-V---GKI--PVDVQELNA 234 (428)
T ss_pred cHHHHHHhcC-----CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-c---CCc--cccHHHcCc
Confidence 3566666666 48889999999999999999 9999999999999999999998 4 431 233335778
Q ss_pred chhhhc--cccC-CCCceEEEEecH
Q psy13322 119 DIVTMA--KGIA-NGFPMGAVVTTT 140 (195)
Q Consensus 119 di~~~s--K~l~-~G~~~g~v~~~~ 140 (195)
|.++++ |.+| .| +|++-+++
T Consensus 235 D~~s~s~HK~ygp~~--iGaLYvr~ 257 (428)
T KOG1549|consen 235 DFLSISAHKIYGPPG--IGALYVRR 257 (428)
T ss_pred hheeeecccccCCCc--ceEEEEcc
Confidence 988887 9888 56 78877775
No 348
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=97.55 E-value=0.00079 Score=58.25 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=79.0
Q ss_pred EEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccCCCCceEEE
Q psy13322 59 LIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIANGFPMGAV 136 (195)
Q Consensus 59 vivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~~G~~~g~v 136 (195)
|.+--+-+.+|.+.+ +++|.+ ++||+++|+|=+|+ +|.. ..-.. . .|++++| |.|++-.-+|.+
T Consensus 140 V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~qs-~G~~---pidv~--~--iD~~~~s~~K~l~~P~G~g~l 205 (378)
T PRK03080 140 VVFTWNGTTTGVRVP----VARWIG--ADREGLTICDATSA-AFAL---PLDWS--K--LDVYTFSWQKVLGGEGGHGMA 205 (378)
T ss_pred EEEEecCCccceecc----chhhcc--ccCCCeEEEecccc-cccC---CCCHH--H--CcEEEEehhhhCCCCCceEEE
Confidence 445445556788887 888877 78999999998887 5422 11122 2 3888776 998742227899
Q ss_pred EecHHHHHHhhccc----------------------cccCCC-chHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHH
Q psy13322 137 VTTTEIAQVLTKAA----------------------HFNTFG-GNPVGCVIASTVLDVIKD----EELQYNCKQVSAQII 189 (195)
Q Consensus 137 ~~~~~i~~~l~~~~----------------------~~~t~~-~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~ 189 (195)
..+++..+.+.... ...|.+ .+..+..+..++|+.+.+ +++.++.+++.++++
T Consensus 206 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~ 285 (378)
T PRK03080 206 ILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLY 285 (378)
T ss_pred EECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99998877654320 011222 233455555778887743 455677788888888
Q ss_pred HHhhc
Q psy13322 190 GYLRV 194 (195)
Q Consensus 190 ~~L~~ 194 (195)
+.|++
T Consensus 286 ~~l~~ 290 (378)
T PRK03080 286 DWAEK 290 (378)
T ss_pred HHHHh
Confidence 88764
No 349
>PRK12566 glycine dehydrogenase; Provisional
Probab=97.52 E-value=0.001 Score=63.54 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccc-cCC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGV 116 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~-~~~ 116 (195)
-++++|+++++++. +++++|++....+.++. . +-+++|.++++++|+++++|=++. .+..+ ... -.+
T Consensus 626 iDle~L~a~I~~~~--~~laaVmiT~Pnt~Gv~-e---~~V~eI~~iah~~Galv~vDgA~~-~a~~~-----l~~Pg~~ 693 (954)
T PRK12566 626 VDLDDLKAKAAAAG--DRLSCLMITYPSTHGVY-E---EGIREICEVVHQHGGQVYMDGANL-NAQVG-----LARPADI 693 (954)
T ss_pred cCHHHHHHHhhccC--CCEEEEEEEecCcCcee-c---chHHHHHHHHHHcCCEEEEEeeCh-hhccC-----CCChhhc
Confidence 34799999998654 58888888776554433 2 239999999999999999999886 32211 111 134
Q ss_pred Ccchhhhc--cccC----CCCc-eEEEEecHHHHHHhhccc-------------cccCCCchHHHHHHHHHHHHhhcchh
Q psy13322 117 SPDIVTMA--KGIA----NGFP-MGAVVTTTEIAQVLTKAA-------------HFNTFGGNPVGCVIASTVLDVIKDEE 176 (195)
Q Consensus 117 ~pdi~~~s--K~l~----~G~~-~g~v~~~~~i~~~l~~~~-------------~~~t~~~~p~~~~aa~aal~~~~~~~ 176 (195)
-.|+++++ |.|+ +|.| +|.+.+.+.+...+.... .+....++.....++..-++.+-.+
T Consensus 694 GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e- 772 (954)
T PRK12566 694 GADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ- 772 (954)
T ss_pred CCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH-
Confidence 55888775 9885 3444 566666776666555321 1111222223333444444444333
Q ss_pred HHH---HHHHHHHHHHHHhhc
Q psy13322 177 LQY---NCKQVSAQIIGYLRV 194 (195)
Q Consensus 177 ~~~---~l~~~~~~l~~~L~~ 194 (195)
+.+ ....+..|+.++|.+
T Consensus 773 Lk~aa~~ailnAnYla~rL~~ 793 (954)
T PRK12566 773 LADASEVAILSANYLANQLGG 793 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhHh
Confidence 322 224578888888753
No 350
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.51 E-value=0.0014 Score=56.38 Aligned_cols=153 Identities=16% Similarity=0.303 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCC-ccccccc-CC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDN-YWGFEMH-GV 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~-~~~~~~~-~~ 116 (195)
+++.+-..|++... ....++-.+-.+.+|. -++.+.+++|.++.++.+.+-++|=+|.||+..... -++...+ ..
T Consensus 158 df~~mla~L~~a~~--~~vvLLH~CcHNPTG~-D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~ 234 (396)
T COG1448 158 DFDGMLADLKTAPE--GSVVLLHGCCHNPTGI-DPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEV 234 (396)
T ss_pred cHHHHHHHHHhCCC--CCEEEEecCCCCCCCC-CCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHh
Confidence 35666666666542 3334555556778885 557788999999999999999999999999642210 0111111 11
Q ss_pred Cc-chh--hhccccC-CCCceEEEE--e-cHHHHHHhhccc---cccCCCchH-HHHHHHHHHHHh--h----c-c-hhH
Q psy13322 117 SP-DIV--TMAKGIA-NGFPMGAVV--T-TTEIAQVLTKAA---HFNTFGGNP-VGCVIASTVLDV--I----K-D-EEL 177 (195)
Q Consensus 117 ~p-di~--~~sK~l~-~G~~~g~v~--~-~~~i~~~l~~~~---~~~t~~~~p-~~~~aa~aal~~--~----~-~-~~~ 177 (195)
-+ =++ .+||.|| =|-|+|+.. + .++..+.+.... .-.+++.+| .++..+...|+- + + + +++
T Consensus 235 ~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~M 314 (396)
T COG1448 235 GPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEM 314 (396)
T ss_pred CCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22 233 5689998 566666533 2 334444433221 234455444 344444444431 1 1 1 578
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
++++.+++..|++.|++
T Consensus 315 r~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 315 RQRILEMRQALVDALKA 331 (396)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88999999999998875
No 351
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=97.50 E-value=0.001 Score=57.35 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=77.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC--CC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA--NG 130 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~--~G 130 (195)
+++.|.+--.-...|.+.+ +++| ++++|+++|+|=+++ +|.. ....+ .-|++++| |.++ +|
T Consensus 128 ~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g~~---~idv~----~~D~~~~s~~K~lg~~~G 192 (361)
T TIGR01366 128 GVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AGGL---PVDIA----ETDVYYFAPQKNFASDGG 192 (361)
T ss_pred CCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-ccCC---CCCHH----HCCEEEEEchhhcCCCCc
Confidence 5666766666666787777 5544 689999999999988 5321 11122 14888886 9998 34
Q ss_pred CceEEEEecHHHHHHhhccc--------------------cccCCCch-HHHHHHHHHHHHhhcc----hhHHHHHHHHH
Q psy13322 131 FPMGAVVTTTEIAQVLTKAA--------------------HFNTFGGN-PVGCVIASTVLDVIKD----EELQYNCKQVS 185 (195)
Q Consensus 131 ~~~g~v~~~~~i~~~l~~~~--------------------~~~t~~~~-p~~~~aa~aal~~~~~----~~~~~~l~~~~ 185 (195)
++.++.++++.+.+.... ...|.+.+ ...+.+..++++.+.+ +...++.++..
T Consensus 193 --l~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~ 270 (361)
T TIGR01366 193 --LWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSS 270 (361)
T ss_pred --eEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 566677887665554210 01333333 3444466778887743 34557778888
Q ss_pred HHHHHHhhc
Q psy13322 186 AQIIGYLRV 194 (195)
Q Consensus 186 ~~l~~~L~~ 194 (195)
+++++.|++
T Consensus 271 ~~l~~~l~~ 279 (361)
T TIGR01366 271 SRLYSWAQE 279 (361)
T ss_pred HHHHHHHHh
Confidence 888877765
No 352
>PLN02263 serine decarboxylase
Probab=97.43 E-value=0.0062 Score=54.33 Aligned_cols=149 Identities=15% Similarity=0.047 Sum_probs=90.3
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCC-----EEEEeccccCcccc-CCCccccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG-----LFISDEVQTGFGRT-GDNYWGFE 112 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~-----llI~DEv~~g~gr~-G~~~~~~~ 112 (195)
+.+.|++.|++.. .+..+|+.-.-..+.|.+=+ +++|.++|++||+ +|=+|=++.|+-.. -+..-.+.
T Consensus 214 D~~aL~~aI~~d~--~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~d 287 (470)
T PLN02263 214 DCADFKAKLLANK--DKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVT 287 (470)
T ss_pred cHHHHHHHHHhCC--CCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccC
Confidence 3688888887643 24555555544445687666 9999999999997 99999999885320 01000011
Q ss_pred ccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccc-----cccCCCc--hHHHHHHHHHHHHhhcch---hHHHH
Q psy13322 113 MHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGG--NPVGCVIASTVLDVIKDE---ELQYN 180 (195)
Q Consensus 113 ~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~-----~~~t~~~--~p~~~~aa~aal~~~~~~---~~~~~ 180 (195)
+....|-++++ |-++.-++.|.++.++...+.+.... ...|..+ +-...+...++|+....+ +..++
T Consensus 288 -f~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~ 366 (470)
T PLN02263 288 -FKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQK 366 (470)
T ss_pred -CCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 11124555554 88877788999999976554443221 1112222 212345555666665443 45566
Q ss_pred HHHHHHHHHHHhhc
Q psy13322 181 CKQVSAQIIGYLRV 194 (195)
Q Consensus 181 l~~~~~~l~~~L~~ 194 (195)
.-++.++|.+.|++
T Consensus 367 ~~~~A~~l~~~l~~ 380 (470)
T PLN02263 367 CLRNAHYLKDRLRE 380 (470)
T ss_pred HHHHHHHHHHHHHh
Confidence 66778888888875
No 353
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=97.42 E-value=0.0034 Score=54.46 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCCCCeE-EEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-C
Q psy13322 40 YEQLVNAFQYNVPITGAA-ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV-S 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~a-avivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~-~ 117 (195)
.++|++.|++...++.+- +|+.-.--...|.+=+ +++|.++|++|+++|=+|=++.|....-. ..-....++ .
T Consensus 178 ~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wlHVDaA~gg~~~~~~-~~~~~~~gi~~ 252 (373)
T PF00282_consen 178 IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWLHVDAAYGGSALLSP-EYRHLLFGIER 252 (373)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EEEEEETTGGGGGGHC-TTGGGGTTGGG
T ss_pred HHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccceeeeecccccccccccc-ccccccccccc
Confidence 678888776543223444 3444333445677655 99999999999999999999887322211 100111233 3
Q ss_pred cchhhhc--cccCCCCceEEEEecHH--HHHHhhccc---c-------------ccCCC-chHHHHHHHHHHHHhhcc--
Q psy13322 118 PDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA---H-------------FNTFG-GNPVGCVIASTVLDVIKD-- 174 (195)
Q Consensus 118 pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~---~-------------~~t~~-~~p~~~~aa~aal~~~~~-- 174 (195)
.|-+++. |.++.-++.|.++.++. +.+.+.... . ..|.. +-.+.......+|+.+-.
T Consensus 253 adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR~~~alk~w~~l~~~G~~G 332 (373)
T PF00282_consen 253 ADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSRRFRALKLWATLKSLGREG 332 (373)
T ss_dssp ESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSGHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccccccccccccchHHHHHHHHHhcCHHH
Confidence 4666664 98887778899988874 333331110 0 11222 224555556666665543
Q ss_pred -hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 -EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 -~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+.+++.-++.++|.+.|++
T Consensus 333 ~~~~i~~~~~~a~~l~~~l~~ 353 (373)
T PF00282_consen 333 YRERIRRCIELARYLADRLRK 353 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 45666677788888888875
No 354
>PLN02590 probable tyrosine decarboxylase
Probab=97.32 E-value=0.0041 Score=56.44 Aligned_cols=151 Identities=12% Similarity=0.026 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCC-
Q psy13322 39 FYEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV- 116 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~- 116 (195)
+.+.|++.|++....+ ...+|+...-....|.+=+ |++|.++|++||+||=+|=++.|+...-..+. ....|+
T Consensus 270 d~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r-~~~~Gie 344 (539)
T PLN02590 270 PPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWLHVDAAYAGNACICPEYR-KFIDGIE 344 (539)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeEEEecchhhhhhcChhhH-HHhcCCc
Confidence 3688888887542212 3445555554555687766 99999999999999999999887643221110 011244
Q ss_pred Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc----c------------ccCC-CchHHHHHHHHHHHHhhcc-
Q psy13322 117 SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA----H------------FNTF-GGNPVGCVIASTVLDVIKD- 174 (195)
Q Consensus 117 ~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~----~------------~~t~-~~~p~~~~aa~aal~~~~~- 174 (195)
..|-+++. |.+...+..|.+++++. +.+.+.... + ..+. .+-.+.......+|+.+-.
T Consensus 345 ~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~ 424 (539)
T PLN02590 345 NADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSE 424 (539)
T ss_pred cCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHH
Confidence 45766664 88887788898888753 333332110 0 0011 1223455556666666543
Q ss_pred --hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 --EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 --~~~~~~l~~~~~~l~~~L~~ 194 (195)
.+.+++.-++.++|.+.|++
T Consensus 425 G~~~~i~~~~~lA~~~~~~l~~ 446 (539)
T PLN02590 425 NLRNFIRDHVNLAKHFEDYVAQ 446 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666777888887764
No 355
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0087 Score=53.34 Aligned_cols=148 Identities=15% Similarity=0.047 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCccccc-ccC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFE-MHG 115 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~-~~~ 115 (195)
-+.++|++.+.+.... . +||.-.-....|.+=+ +++|.++|+++++++-+|=+.+|+-. .-... .. .++
T Consensus 193 id~~~l~~~i~~~t~~-g--~vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~--~~~~f~ 263 (460)
T COG0076 193 IDVDALEEAIDENTIG-G--VVVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFGGFLLPFLEPD--GRWDFG 263 (460)
T ss_pred cCHHHHHHHHHhhccC-c--eEEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEccccceeecccCcc--chhhcC
Confidence 3478999999865321 1 2443333344565555 99999999999999999999888632 11100 01 124
Q ss_pred C-Ccchhhhc--cccCCCCceEEEEecHH--HHHHhhccc--------cccCC--CchHHHHHHHHHHHHhhcch---hH
Q psy13322 116 V-SPDIVTMA--KGIANGFPMGAVVTTTE--IAQVLTKAA--------HFNTF--GGNPVGCVIASTVLDVIKDE---EL 177 (195)
Q Consensus 116 ~-~pdi~~~s--K~l~~G~~~g~v~~~~~--i~~~l~~~~--------~~~t~--~~~p~~~~aa~aal~~~~~~---~~ 177 (195)
+ ..|-++++ |-+-.=++.|+++.+++ +.+.+.... ...|. +.+....++..+++..+..+ .+
T Consensus 264 l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l 343 (460)
T COG0076 264 LEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKL 343 (460)
T ss_pred CCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHH
Confidence 4 34556665 65544456788988764 555443211 11121 11223556666777777444 45
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
.++..++.++|.+.|++
T Consensus 344 ~~~~~~~a~~la~~l~~ 360 (460)
T COG0076 344 LDRTLELARYLAEELEK 360 (460)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56666888999888875
No 356
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=97.17 E-value=0.0011 Score=56.97 Aligned_cols=122 Identities=21% Similarity=0.185 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEE-EEcc----cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC------ccccCCC
Q psy13322 39 FYEQLVNAFQYNVPITGAAAL-IAES----IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG------FGRTGDN 107 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aav-ivEp----v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g------~gr~G~~ 107 (195)
.+++.++.|. ++++++ -+.+ ++|-.+. +. ++++.+++++|++++|.|=.-.. +|..+.
T Consensus 125 ~~~Dye~AI~-----e~Ta~ll~Vh~Sn~~i~GFt~~-~~----~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~E- 193 (367)
T PF03841_consen 125 HLSDYEKAIT-----ENTAALLKVHTSNFRIQGFTGE-VS----LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDE- 193 (367)
T ss_dssp ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred cccccccccc-----cccccccccccccccccccccc-cc----HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccc-
Confidence 3566666665 244444 4542 2332232 22 89999999999999999954311 111111
Q ss_pred cccccccCCCcchhhhc--cccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhh
Q psy13322 108 YWGFEMHGVSPDIVTMA--KGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI 172 (195)
Q Consensus 108 ~~~~~~~~~~pdi~~~s--K~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~ 172 (195)
..-.+....-.|+++|| |-+|| -..|.+++++++++.+++....-.+-..-+.+++..++|+..
T Consensus 194 p~v~~~~~~GaDlV~fSGdKlLGG-PQaGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y 259 (367)
T PF03841_consen 194 PTVQEYLAAGADLVTFSGDKLLGG-PQAGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLY 259 (367)
T ss_dssp -----CCCCT-SEEEEETTSSSSS--S-EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-
T ss_pred cHHHHHhhcCCCEEEEECCCcCCC-CCeEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHH
Confidence 11112234467999997 88874 346899999999999886544445555778888888888764
No 357
>PRK13578 ornithine decarboxylase; Provisional
Probab=97.15 E-value=0.0022 Score=59.80 Aligned_cols=144 Identities=14% Similarity=0.081 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCCC-----C-CeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHcCCEEEEeccccCccccCCCc--ccc
Q psy13322 41 EQLVNAFQYNVPI-----T-GAAALIAESIQGVSGVKEFPRYFLRRAYEL-IKSNNGLFISDEVQTGFGRTGDNY--WGF 111 (195)
Q Consensus 41 ~~l~~~l~~~~~~-----~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l-~~~~~~llI~DEv~~g~gr~G~~~--~~~ 111 (195)
+.+++.|+++.++ . -.++||+-|-+ +|.... ++.|.++ |++++ .|++||+|.+.-.....+ +.-
T Consensus 263 ~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~ 335 (720)
T PRK13578 263 EYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSP 335 (720)
T ss_pred HHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-cEEEeCcchhhhccCcccccCCh
Confidence 5677777766221 1 24466666655 676666 8889888 78888 999999998742222211 111
Q ss_pred cccCCCcc----hhhhc--cccCCCC-ceEEEEecHHHH---------HHhhccccccCCCchHHHHHHHHHH-HHhhc-
Q psy13322 112 EMHGVSPD----IVTMA--KGIANGF-PMGAVVTTTEIA---------QVLTKAAHFNTFGGNPVGCVIASTV-LDVIK- 173 (195)
Q Consensus 112 ~~~~~~pd----i~~~s--K~l~~G~-~~g~v~~~~~i~---------~~l~~~~~~~t~~~~p~~~~aa~aa-l~~~~- 173 (195)
......+| ++|-| |.+++ + ..|++-.+...+ +.+......++++++...+.|++-+ -..++
T Consensus 336 ~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~~~m~~ 414 (720)
T PRK13578 336 LLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNAKMHEG 414 (720)
T ss_pred hhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 11234556 66667 88873 3 234443332111 2233222222222233333333322 33332
Q ss_pred --chhHHHHHHHHHHHHHHHh
Q psy13322 174 --DEELQYNCKQVSAQIIGYL 192 (195)
Q Consensus 174 --~~~~~~~l~~~~~~l~~~L 192 (195)
-..+.+...+....+++.|
T Consensus 415 ~~G~~l~~~~i~~a~~~R~~l 435 (720)
T PRK13578 415 ESGRRLWMECVKLGIEARKLI 435 (720)
T ss_pred hhCHHHHHHHHHHHHHHHHHH
Confidence 2455666666666666665
No 358
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=97.12 E-value=0.004 Score=53.68 Aligned_cols=111 Identities=10% Similarity=0.143 Sum_probs=72.1
Q ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHH
Q psy13322 66 GVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEI 142 (195)
Q Consensus 66 s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i 142 (195)
..+|...++ +++| ||+++|+|=+++ +|- . ..-.+.+ |++++| |.+| .| +|.+.+++++
T Consensus 152 TstGv~~~~---i~~i------~g~l~vVDavss-~g~--~-~idv~~~----d~~~~ssqK~lgP~G--lg~l~~s~~~ 212 (360)
T PRK05355 152 TIDGTEFHE---LPDT------GDVPLVADMSSD-ILS--R-PIDVSKF----GLIYAGAQKNIGPAG--LTIVIVREDL 212 (360)
T ss_pred CcceEecCc---cccc------CCCcEEEEcCcc-ccC--c-cCCHHHc----cEEEEeccccccCCc--eEEEEECHHH
Confidence 345666532 4444 899999999987 432 1 1112222 477776 9997 45 7899999988
Q ss_pred HHHhhcc-----------ccccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322 143 AQVLTKA-----------AHFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 143 ~~~l~~~-----------~~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l 195 (195)
.+.+... ....+. ..|...+.+..++|+.+.+ +++.++.+++.+++++.|+++
T Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~ 281 (360)
T PRK05355 213 LGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSS 281 (360)
T ss_pred HhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 7766541 111222 3455677777788888754 466778888888888888753
No 359
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=97.04 E-value=0.0064 Score=52.19 Aligned_cols=103 Identities=10% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHHHHHhhccc---------
Q psy13322 83 ELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKAA--------- 150 (195)
Q Consensus 83 ~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~~--------- 150 (195)
++++.+++++++|=+++ +|- . ..-.+.+ |++++| |.+| .| +|.+..+++..+.+....
T Consensus 149 ~l~~~~~~l~iVDavss-~g~--~-~id~~~~----d~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~~ 218 (349)
T TIGR01364 149 ELPDVKNAPLVADMSSN-ILS--R-PIDVSKF----GLIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKIH 218 (349)
T ss_pred eecccCCCeEEEEcccc-ccC--c-cCCHHHc----cEEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHHH
Confidence 67777899999999887 432 1 1112222 466776 9997 45 789999998876553321
Q ss_pred --cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322 151 --HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 151 --~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l 195 (195)
...++ +.|...+.+..++|+.+.+ +++.++.+++.+++++.|+++
T Consensus 219 ~~~~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~ 270 (349)
T TIGR01364 219 AENDSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNS 270 (349)
T ss_pred HhcCCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 11223 3455667777788888743 456677888888888888764
No 360
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=96.95 E-value=0.0085 Score=51.36 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh--ccccC-CCC
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM--AKGIA-NGF 131 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~--sK~l~-~G~ 131 (195)
++..|.+--.-...|.+.. ++++.||+++++|=+++ +|.. ..-.+.++ +... -|.+| .|
T Consensus 138 ~~~lV~~~h~~t~tG~~~~---------~i~~~~g~~~~VDa~qs-~g~~---~idv~~~~----~~~ss~~K~lGP~G- 199 (355)
T cd00611 138 DAAYVHYCSNETIHGVEFD---------EVPDTGGVPLVADMSSN-ILSR---PIDVSKFG----VIYAGAQKNLGPAG- 199 (355)
T ss_pred CCCEEEEeCCcccccEEcc---------eecccCCCeEEEEcccc-ccCC---CCCHHHhC----EEEeecccccCCCc-
Confidence 4445555555455666533 45566999999999988 5321 11222233 3333 28876 45
Q ss_pred ceEEEEecHHHHHHhhccc-----------cccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhcC
Q psy13322 132 PMGAVVTTTEIAQVLTKAA-----------HFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 132 ~~g~v~~~~~i~~~l~~~~-----------~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~l 195 (195)
+|.+.+++++.+.+.... ...++ ..|..+..+..++|+.+.+ +++.++.+++.+++++.|+++
T Consensus 200 -~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 200 -VTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred -eEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 788999998776654321 01113 3355577777788888743 456677888888888888754
No 361
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.92 E-value=0.01 Score=55.45 Aligned_cols=145 Identities=11% Similarity=0.006 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEE-EEeccccCccccCCCcccccc--cCC
Q psy13322 41 EQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLF-ISDEVQTGFGRTGDNYWGFEM--HGV 116 (195)
Q Consensus 41 ~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~ll-I~DEv~~g~gr~G~~~~~~~~--~~~ 116 (195)
+.+++.|+++.... ..++||+-|-+ +|.... ++.|.++| |+.+ ++||+|.+.-.....+..... .+-
T Consensus 283 e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~ 353 (713)
T PRK15399 283 DSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGER 353 (713)
T ss_pred HHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCC
Confidence 78888888763211 14677777744 676665 77788888 6766 599999874222221111111 111
Q ss_pred Ccchh---hhc--cccCCCCceEEEEecHHHH-HHhhccc-cccCCCchHHHHHHHHHHHHhhcc---hhHHHHHHHHHH
Q psy13322 117 SPDIV---TMA--KGIANGFPMGAVVTTTEIA-QVLTKAA-HFNTFGGNPVGCVIASTVLDVIKD---EELQYNCKQVSA 186 (195)
Q Consensus 117 ~pdi~---~~s--K~l~~G~~~g~v~~~~~i~-~~l~~~~-~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l~~~~~ 186 (195)
.+|.+ |-| |.+++=-..|++-.+..+- +.+.... ...|++.+-+-+++.-.+-..++. ..+.+...+.+.
T Consensus 354 ~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~i~~a~ 433 (713)
T PRK15399 354 VPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRSVERAL 433 (713)
T ss_pred CCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45766 446 8887311344444433221 2222222 223333333333333344444432 456677777777
Q ss_pred HHHHHhhc
Q psy13322 187 QIIGYLRV 194 (195)
Q Consensus 187 ~l~~~L~~ 194 (195)
.+++.|++
T Consensus 434 ~fR~~l~~ 441 (713)
T PRK15399 434 HFRKEVQR 441 (713)
T ss_pred HHHHHHHh
Confidence 77777754
No 362
>KOG0258|consensus
Probab=96.54 E-value=0.0061 Score=52.66 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc-cCCCcccccc----
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR-TGDNYWGFEM---- 113 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr-~G~~~~~~~~---- 113 (195)
.++|++.++++... +..+.|||.|-. .+|. +.+.+-+++|..+|.+++++|+.||||..-.+ .|..|+++..
T Consensus 200 ~~el~~~~~eA~k~i~~r~lvvINPGN-PTGq-vls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~e 277 (475)
T KOG0258|consen 200 VAELERSVDEARKGINPRALVVINPGN-PTGQ-VLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHE 277 (475)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCC-ccch-hhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHH
Confidence 56777777766532 356788899853 4564 56788899999999999999999999976334 4444767631
Q ss_pred cC-CCcc---h---hhhccccC--CCCceEEEEe---cHHHHHHhhccccccCCCchHHHHHHHHH----------HHHh
Q psy13322 114 HG-VSPD---I---VTMAKGIA--NGFPMGAVVT---TTEIAQVLTKAAHFNTFGGNPVGCVIAST----------VLDV 171 (195)
Q Consensus 114 ~~-~~pd---i---~~~sK~l~--~G~~~g~v~~---~~~i~~~l~~~~~~~t~~~~p~~~~aa~a----------al~~ 171 (195)
.| ..|| + ...||++- .|.+.|++=. ..++.+.+.+.. +...+.+-.+++..-. .++.
T Consensus 278 mg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~-si~lc~~V~GQ~~vdl~VnPP~Pgd~Sy~~ 356 (475)
T KOG0258|consen 278 MGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLA-SIKLCPQVSGQKLVDLVVNPPKPGDPSYDL 356 (475)
T ss_pred hcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHH-hhhhcCCccchhhhceecCCCCCCCcchhh
Confidence 23 3443 2 24478886 5778887543 234444443321 0111111122222111 1121
Q ss_pred h--cchhHHHHHHHHHHHHHHHhhcC
Q psy13322 172 I--KDEELQYNCKQVSAQIIGYLRVV 195 (195)
Q Consensus 172 ~--~~~~~~~~l~~~~~~l~~~L~~l 195 (195)
. +.+...+.++.+...+.+.++++
T Consensus 357 ~~~Ekd~il~~l~~ra~l~~~~~ns~ 382 (475)
T KOG0258|consen 357 FSSEKDGILSSLRSRAKLTEDAFNSL 382 (475)
T ss_pred hhhhhHhHHHHHHHHhHHHHHHHhhc
Confidence 1 23566777888888887777653
No 363
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=96.28 E-value=0.011 Score=55.34 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc---ccccccC
Q psy13322 40 YEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY---WGFEMHG 115 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~---~~~~~~~ 115 (195)
.+.+++.|+++.... ..++||+-|-+ +|.... ++.|.++|..++ |++||+|.+.-.....+ .+.. .+
T Consensus 282 ~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~-~g 352 (714)
T PRK15400 282 HATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMS-GG 352 (714)
T ss_pred HHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhh-cC
Confidence 377888887763211 23578887754 676665 888999998887 68999998742222211 1111 22
Q ss_pred CCc-c--hhhhc--cccCCCCc-eEEEEe----c-HHHHHHhhccccccCCCchHHHHHHHHHHHHhhcc---hhHHHHH
Q psy13322 116 VSP-D--IVTMA--KGIANGFP-MGAVVT----T-TEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKD---EELQYNC 181 (195)
Q Consensus 116 ~~p-d--i~~~s--K~l~~G~~-~g~v~~----~-~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~---~~~~~~l 181 (195)
-.+ | ++|-| |.+++ +. .|++-. . +.+.+.+. ...|++.+-+-+|+.-.+-..++. ..+.+..
T Consensus 353 a~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~ 428 (714)
T PRK15400 353 RVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVASTETAAAMMKGNAGKRLINGS 428 (714)
T ss_pred CCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 221 3 45556 88863 21 122111 1 22323222 223334333333333344444432 4566777
Q ss_pred HHHHHHHHHHhhc
Q psy13322 182 KQVSAQIIGYLRV 194 (195)
Q Consensus 182 ~~~~~~l~~~L~~ 194 (195)
.+.+..+++.|++
T Consensus 429 i~~a~~~R~~l~~ 441 (714)
T PRK15400 429 IERAIKFRKEIKR 441 (714)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777754
No 364
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=96.01 E-value=0.14 Score=44.18 Aligned_cols=58 Identities=12% Similarity=0.122 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ 98 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~ 98 (195)
+++.|+++|++.++ +++..|+.-- ..+++| -+.+-.-+++++++|++|++.+++|-..
T Consensus 170 D~~kLe~lidevG~-~nvp~I~~tiT~NsagG-QpVSm~n~r~v~~ia~ky~ipvv~Da~R 228 (471)
T COG3033 170 DLEKLERLIDEVGA-DNVPYIVLTITNNSAGG-QPVSMANMKAVYEIAKKYDIPVVMDAAR 228 (471)
T ss_pred CHHHHHHHHHHhCc-ccCcEEEEEEeccccCC-CcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence 48999999998876 4676554443 334455 5667788999999999999999999764
No 365
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=95.33 E-value=0.35 Score=42.13 Aligned_cols=145 Identities=9% Similarity=0.043 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHH-HHHcCCEEEEeccccCccccCCC--cc--cc---
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYEL-IKSNNGLFISDEVQTGFGRTGDN--YW--GF--- 111 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l-~~~~~~llI~DEv~~g~gr~G~~--~~--~~--- 111 (195)
++.+++++.+. ..|++|+.=|.+|+-.-+.++.+..++|+.+ +.+.+..|+.|.+|+=--.++.. .. .+
T Consensus 160 mD~Ve~LV~~D---~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~ 236 (425)
T PF12897_consen 160 MDMVEELVAED---PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDALLNILDA 236 (425)
T ss_dssp HHHHHHHTHTS---TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS------HHHH
T ss_pred HHHHHHHHhcC---CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchhhhHHHHH
Confidence 78888888643 4899999999999743367889999999999 44789999999998721111210 00 00
Q ss_pred -cccCCCcch----hhhccccCCCCceEEEEecHHHHHHhhccccccCCCchHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q psy13322 112 -EMHGVSPDI----VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSA 186 (195)
Q Consensus 112 -~~~~~~pdi----~~~sK~l~~G~~~g~v~~~~~i~~~l~~~~~~~t~~~~p~~~~aa~aal~~~~~~~~~~~l~~~~~ 186 (195)
+..| .||. .++||---.|-.++++.++++-++.+.......|.+.+-+.|..-..-++-.+ .++.++.++.++
T Consensus 237 ~~~AG-npdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvNQLRHvrff~d~~-gGv~aHM~kHa~ 314 (425)
T PF12897_consen 237 CAKAG-NPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVNQLRHVRFFKDAE-GGVRAHMRKHAA 314 (425)
T ss_dssp HHHTT--TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHHHHHHHHHHHSHH-THHHHHHHHHHH
T ss_pred HHHcC-CCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCceeCccHHHHHHHHHHhcChh-hHHHHHHHHHHH
Confidence 1112 3442 24477554444589999999877877766666677777777776555444321 145555555554
Q ss_pred HHH
Q psy13322 187 QII 189 (195)
Q Consensus 187 ~l~ 189 (195)
.|+
T Consensus 315 il~ 317 (425)
T PF12897_consen 315 ILR 317 (425)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 366
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=95.14 E-value=0.098 Score=45.48 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=71.7
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC--C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA--N 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~--~ 129 (195)
.+..+-.|+. +|...+ ++ +++++ +++++|+|=|=+ +| |. .+-.. ..|+++.| |+|+ +
T Consensus 130 ~v~~vhnETS---TGv~np----v~---~i~~~~~~~lliVDavSs-~g--~~-~l~~d----~iDv~~tgsQK~L~~pp 191 (374)
T TIGR01365 130 DVVFTWNGTT---SGVRVP----NG---DFIPADREGLTICDATSA-AF--AQ-DLDYH----KLDVVTFSWQKVLGGEG 191 (374)
T ss_pred CEEEecCCCc---hheecc----cc---ccccccCCCcEEEEccch-hc--CC-CCChh----HCcEEEEechhccCCCC
Confidence 4544455543 455555 33 33433 589999997644 53 32 11122 26777775 9998 4
Q ss_pred CCceEEEEecHHHHHHhhcc----------------------ccccCC-CchHHHHHHHHHHHHhhcc----hhHHHHHH
Q psy13322 130 GFPMGAVVTTTEIAQVLTKA----------------------AHFNTF-GGNPVGCVIASTVLDVIKD----EELQYNCK 182 (195)
Q Consensus 130 G~~~g~v~~~~~i~~~l~~~----------------------~~~~t~-~~~p~~~~aa~aal~~~~~----~~~~~~l~ 182 (195)
| +|.++.+++..+..... ....|. ..+..++.+++.+|+.+.+ ++..++.+
T Consensus 192 G--ls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~ 269 (374)
T TIGR01365 192 A--HGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARAD 269 (374)
T ss_pred c--eEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6 68888888766543310 001233 3344566667777775533 45677788
Q ss_pred HHHHHHHHHhhcC
Q psy13322 183 QVSAQIIGYLRVV 195 (195)
Q Consensus 183 ~~~~~l~~~L~~l 195 (195)
++.+.+++.++++
T Consensus 270 ~~a~~l~~~l~~l 282 (374)
T TIGR01365 270 DNLAVLEAFVAKN 282 (374)
T ss_pred HHHHHHHHHHHHC
Confidence 8888888888753
No 367
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=94.79 E-value=0.58 Score=40.00 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=78.7
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhccccCCC--C
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG--F 131 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~~G--~ 131 (195)
+++|.|++..|+--+|.... +.+|-.++++||++++.|=+|+ -|-.-- -....|..--|-+-=|-+++| -
T Consensus 165 dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHs-aGavp~---~Lh~~gaDfaigcsyKYLNgGPGa 236 (407)
T COG3844 165 DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHS-AGAVPV---DLHAAGADFAIGCSYKYLNGGPGA 236 (407)
T ss_pred cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhcc-cCCcce---eecccCCCeeeeeeceeccCCCCC
Confidence 68999999999999998888 9999999999999999999998 222110 111123332233444888754 3
Q ss_pred ceEEEEecHHHHHHh--------------------hccccccCC--C-chHHHHHHHHHHHHhhcc---hhHHHHHHHHH
Q psy13322 132 PMGAVVTTTEIAQVL--------------------TKAAHFNTF--G-GNPVGCVIASTVLDVIKD---EELQYNCKQVS 185 (195)
Q Consensus 132 ~~g~v~~~~~i~~~l--------------------~~~~~~~t~--~-~~p~~~~aa~aal~~~~~---~~~~~~l~~~~ 185 (195)
|.+..+.++ ..+.. .......-| + .+-.++++...+|++..+ .+++++--...
T Consensus 237 pa~l~v~~~-h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLT 315 (407)
T COG3844 237 PAGLFVAPR-HRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALT 315 (407)
T ss_pred ceeEEeccc-cccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHH
Confidence 333333332 22211 111111111 1 234577777788888755 45555555566
Q ss_pred HHHHHHhh
Q psy13322 186 AQIIGYLR 193 (195)
Q Consensus 186 ~~l~~~L~ 193 (195)
++|.+.++
T Consensus 316 d~fieLvE 323 (407)
T COG3844 316 DYFIELVE 323 (407)
T ss_pred HHHHHHHH
Confidence 66666554
No 368
>PLN02452 phosphoserine transaminase
Probab=94.79 E-value=0.27 Score=42.55 Aligned_cols=97 Identities=9% Similarity=0.096 Sum_probs=64.2
Q ss_pred CEEEEeccccCccccCCCcccccccCCCcchhhhccccC-CCCceEEEEecHHHHHHhhccc-----------cccCC-C
Q psy13322 90 GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAA-----------HFNTF-G 156 (195)
Q Consensus 90 ~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~-----------~~~t~-~ 156 (195)
+++|+|=+.+ +| +. ..-.+.+++ |+..--|.+| .| ++.+++++++.+...... ..+++ .
T Consensus 171 ~~lvVDa~Ss-~g--~~-pidv~~~~v--~~~saqK~lGP~G--l~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~T 242 (365)
T PLN02452 171 VPLVADMSSN-FL--SK-PVDVSKYGV--IYAGAQKNVGPSG--VTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNT 242 (365)
T ss_pred CeEEEECCcc-cc--Cc-ccCHHHcCE--EEEecccccCCCC--eEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCC
Confidence 8999998877 43 22 222344444 4433339997 56 788999998876653321 12233 4
Q ss_pred chHHHHHHHHHHHHhhcc----hhHHHHHHHHHHHHHHHhhc
Q psy13322 157 GNPVGCVIASTVLDVIKD----EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 157 ~~p~~~~aa~aal~~~~~----~~~~~~l~~~~~~l~~~L~~ 194 (195)
.|..++.+..++|+.+.+ +.+.++.+++.++|++.|++
T Consensus 243 P~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~ 284 (365)
T PLN02452 243 PPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE 284 (365)
T ss_pred hhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888899998854 35678888889999998865
No 369
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=94.61 E-value=0.65 Score=40.49 Aligned_cols=55 Identities=4% Similarity=-0.052 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~ 99 (195)
++.+++.+++.++ +.+.+|+. ..-+..|- -++.+++|.++|++||+..|+--+|+
T Consensus 141 ~~~ie~~i~~~G~-~~iLcvlt-ttscfapr---~~D~i~~IakiC~~~~IPhlvNnAYg 195 (389)
T PF05889_consen 141 LEAIEAKIEELGA-DNILCVLT-TTSCFAPR---LPDDIEEIAKICKEYDIPHLVNNAYG 195 (389)
T ss_dssp HHHHHHHHHHHCG-GGEEEEEE-ESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT
T ss_pred HHHHHHHHHHhCC-CCeEEEEE-ecCccCCC---CCccHHHHHHHHHHcCCceEEccchh
Confidence 5778888877653 34555554 44333332 23569999999999999999999887
No 370
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=94.59 E-value=0.42 Score=41.44 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=64.3
Q ss_pred HHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--cccC-CCCceEEEEecHHHHHHhhcc-----------
Q psy13322 84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKA----------- 149 (195)
Q Consensus 84 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~----------- 149 (195)
+.+.+++++|+|=+=+ ++ +. ..-+..+ |++..| |.|| .| ++.++.+++..+.....
T Consensus 163 ~~~~~~~llvvD~sS~-~~--s~-pid~~~~----dvi~agsQKnlgP~G--ltvvivs~~al~~~~~~~p~~ldy~~~~ 232 (364)
T PRK12462 163 AAGLPDSPLIADMSSD-FM--SR-PFDVEAY----GMVYAHAQKNLGPAG--VTVAIIRRALLERVPDTLPPMLDFRTHV 232 (364)
T ss_pred ccccCCCeEEEEcCch-hh--CC-CCChHHc----cEEEeeccccCCCCc--eEEEEECHHHHhhccccCCchhhHHHHH
Confidence 3334799999996633 42 22 2222322 777776 9998 66 67888898877654331
Q ss_pred ccccCC-CchHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHhhc
Q psy13322 150 AHFNTF-GGNPVGCVIASTVLDVIKDE-----ELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 150 ~~~~t~-~~~p~~~~aa~aal~~~~~~-----~~~~~l~~~~~~l~~~L~~ 194 (195)
...+++ ..+.+.+-+...+|+.+.++ .+.++-+++.+.+++.+.+
T Consensus 233 ~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~ 283 (364)
T PRK12462 233 EHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA 283 (364)
T ss_pred hcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 022344 44566888888999988554 4556666777777777654
No 371
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=94.57 E-value=0.42 Score=44.22 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCCCC-CeEEEEEcccCCCCCcccCCHHHHHHHHHHH---HHcCC--EEEEeccccCcccc---CCC--
Q psy13322 39 FYEQLVNAFQYNVPIT-GAAALIAESIQGVSGVKEFPRYFLRRAYELI---KSNNG--LFISDEVQTGFGRT---GDN-- 107 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~-~~aavivEpv~s~~G~~~~~~~~L~~l~~l~---~~~~~--llI~DEv~~g~gr~---G~~-- 107 (195)
+++.|++.|++....+ .+.+||.-.-..+.|.+=+ |++|.++| +++|+ +|=+|=++.|+.+. ...
T Consensus 261 d~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~ 336 (608)
T TIGR03811 261 DINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDN 336 (608)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccccc
Confidence 3678888776532222 4445554444445676666 88888887 77898 58899999986311 100
Q ss_pred ccc-------------c------------ccc-CC-Ccchhhhc--cccCCCCceEEEEecH-HHHHHhhccc-c-----
Q psy13322 108 YWG-------------F------------EMH-GV-SPDIVTMA--KGIANGFPMGAVVTTT-EIAQVLTKAA-H----- 151 (195)
Q Consensus 108 ~~~-------------~------------~~~-~~-~pdi~~~s--K~l~~G~~~g~v~~~~-~i~~~l~~~~-~----- 151 (195)
+.. + ..+ ++ ..|-+|+. |.+..-++.|+++.++ .+.+.+.... +
T Consensus 337 ~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~ 416 (608)
T TIGR03811 337 FIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKG 416 (608)
T ss_pred ccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhcccc
Confidence 000 0 001 22 34556664 7776667788888876 4545443211 0
Q ss_pred --------ccCCCchH--HHHHHHHHHHHhh--cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322 152 --------FNTFGGNP--VGCVIASTVLDVI--KD---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 152 --------~~t~~~~p--~~~~aa~aal~~~--~~---~~~~~~l~~~~~~l~~~L~~ 194 (195)
.++..++- ...++...+++.+ .. .+++++.-++.+++.+.|++
T Consensus 417 ~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~ 474 (608)
T TIGR03811 417 ADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN 474 (608)
T ss_pred ccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01222222 3355555666665 33 45667777778888887764
No 372
>KOG2467|consensus
Probab=94.21 E-value=0.83 Score=39.63 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=76.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ-TGFGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~-~g~gr~G~~~~~~~~~~~~p 118 (195)
.+.|++.-...+|+ .||. .. |.. .+.++ ..+++++|++.|++|++|=+| +|+.-.|.-.-.|++.
T Consensus 178 YD~Le~~A~~frPk----~iia-G~-SaY-~R~~D---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~---- 243 (477)
T KOG2467|consen 178 YDKLEKTATLFRPK----LIIA-GT-SAY-SRLID---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYC---- 243 (477)
T ss_pred hHHHHHHHHhcCCc----EEEe-cc-ccc-hhhcc---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccccc----
Confidence 57888876666554 3332 21 111 13332 789999999999999999999 5664444312233433
Q ss_pred chhhh--ccccCCCCceEEEEecHHH---------------HHHhhccccccCCCc-hHHHHHHHHHHHHhhcch---hH
Q psy13322 119 DIVTM--AKGIANGFPMGAVVTTTEI---------------AQVLTKAAHFNTFGG-NPVGCVIASTVLDVIKDE---EL 177 (195)
Q Consensus 119 di~~~--sK~l~~G~~~g~v~~~~~i---------------~~~l~~~~~~~t~~~-~p~~~~aa~aal~~~~~~---~~ 177 (195)
||+|. =|+|-| =+.|.+..++-+ -+.+....+..-.++ +--.+++...||+....+ ..
T Consensus 244 DiVTTTTHKsLRG-PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Y 322 (477)
T KOG2467|consen 244 DIVTTTTHKSLRG-PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEY 322 (477)
T ss_pred ceeeccccccccC-CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHH
Confidence 66644 488863 234555544421 122222222222222 233445555666665443 34
Q ss_pred HHHHHHHHHHHHHHhhc
Q psy13322 178 QYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 178 ~~~l~~~~~~l~~~L~~ 194 (195)
..++.+|.+.|.+.|.+
T Consensus 323 q~qV~~Nakala~~l~~ 339 (477)
T KOG2467|consen 323 QKQVLKNAKALASALIS 339 (477)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677777777777653
No 373
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=94.17 E-value=0.64 Score=40.29 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
++.+++.|+ .+++.|.+-=-.|-+--...+.+.++++.++.++. ++++++|-.|..|.-+ .+-..+-
T Consensus 144 ~~~i~~~~~-----~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~------~EP~~vG 212 (403)
T PF06838_consen 144 WEAIKKALK-----PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET------QEPTEVG 212 (403)
T ss_dssp HHHHHHHHH-----TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS------S-GGGGT
T ss_pred HHHHHHhhc-----cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc------cCccccc
Confidence 678888888 25556665544343333456678888888888874 7899999988766221 1222345
Q ss_pred cchhh--hccccCCCC--ceEEEEecHHHHHHhhc
Q psy13322 118 PDIVT--MAKGIANGF--PMGAVVTTTEIAQVLTK 148 (195)
Q Consensus 118 pdi~~--~sK~l~~G~--~~g~v~~~~~i~~~l~~ 148 (195)
.|++. +=|-.|||+ ..||+++++++.+....
T Consensus 213 ADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~ 247 (403)
T PF06838_consen 213 ADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAY 247 (403)
T ss_dssp -SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHH
T ss_pred hhheeccceeCCCCCccCcCCEEechHHHHHHHHh
Confidence 57764 449999887 37899999999887654
No 374
>KOG1412|consensus
Probab=94.04 E-value=0.99 Score=38.39 Aligned_cols=149 Identities=18% Similarity=0.288 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCC---Cccccccc-
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD---NYWGFEMH- 114 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~~~- 114 (195)
++.+-..|+... .-..+|.-. -.+.+|+ -|+++-...|+++.++.+.+..+|=+|.|| -.|. -.|+...+
T Consensus 165 ~e~~Lsdl~~AP---e~si~iLhaCAhNPTGm-DPT~EQW~qia~vik~k~lf~fFDiAYQGf-ASGD~~~DawAiR~fV 239 (410)
T KOG1412|consen 165 LEGFLSDLESAP---EGSIIILHACAHNPTGM-DPTREQWKQIADVIKSKNLFPFFDIAYQGF-ASGDLDADAWAIRYFV 239 (410)
T ss_pred HHHHHHHHhhCC---CCcEEeeeccccCCCCC-CCCHHHHHHHHHHHHhcCceeeeehhhccc-ccCCccccHHHHHHHH
Confidence 455555565442 222344444 4677885 567788899999999999999999999998 3453 12333222
Q ss_pred --CCCcchh--hhccccC-CCCceE---EEEecHHHHHHhhcc-c--cccCCCc-hHHHHHHHHHHHHhhc--c------
Q psy13322 115 --GVSPDIV--TMAKGIA-NGFPMG---AVVTTTEIAQVLTKA-A--HFNTFGG-NPVGCVIASTVLDVIK--D------ 174 (195)
Q Consensus 115 --~~~pdi~--~~sK~l~-~G~~~g---~v~~~~~i~~~l~~~-~--~~~t~~~-~p~~~~aa~aal~~~~--~------ 174 (195)
|. +=++ .|+|-+| -+=++| .++-....+..+... . .-.+++. +..+...+...|+.-+ +
T Consensus 240 ~~g~-e~fv~QSFaKNfGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~si 318 (410)
T KOG1412|consen 240 EQGF-ELFVCQSFAKNFGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSI 318 (410)
T ss_pred hcCC-eEEEEhhhhhhcccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHH
Confidence 21 1122 6789888 444544 344344555444332 1 2334443 3345555555664321 1
Q ss_pred hhHHHHHHHHHHHHHHHhhc
Q psy13322 175 EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 175 ~~~~~~l~~~~~~l~~~L~~ 194 (195)
..+-.++.+++..|++.|..
T Consensus 319 k~MssRI~~MR~aLrd~L~a 338 (410)
T KOG1412|consen 319 KTMSSRIKKMRTALRDHLVA 338 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 12345666777777777654
No 375
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=94.00 E-value=0.45 Score=43.32 Aligned_cols=91 Identities=20% Similarity=0.153 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCCCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGVSP 118 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~~p 118 (195)
.+.+++.+.++.. .+..+||+.|-+ +|.... +++|.+++.++++++..||+|.- ++..+. . .-....-..
T Consensus 153 ~~~~~~~l~~~~~-~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~~~~~-l-~~~~~~~~~ 223 (557)
T COG1982 153 LETFKEALLAHPD-AEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFDFSPM-L-PESALNGGA 223 (557)
T ss_pred HHHHHHHHHhChh-hheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCccccccccc-C-cchhhhcCc
Confidence 5788888877642 126788888865 677666 99999999999999999999962 233322 1 111112344
Q ss_pred chhhhc--cccCCCCceEEEEec
Q psy13322 119 DIVTMA--KGIANGFPMGAVVTT 139 (195)
Q Consensus 119 di~~~s--K~l~~G~~~g~v~~~ 139 (195)
|++|-| |.+++.-..|.+-.+
T Consensus 224 ~~~tqS~HK~l~alSQaS~iHv~ 246 (557)
T COG1982 224 DFVTQSTHKLLAALSQASMIHVK 246 (557)
T ss_pred eEEEechhhhhhhhhhhHHHhhC
Confidence 667777 777643344444444
No 376
>KOG0629|consensus
Probab=93.92 E-value=0.14 Score=45.02 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCC--CCcccCCHHHHHHHHHHHHHcCCEEEEeccccC-ccccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGV--SGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~--~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g-~gr~G~~~~~~~~~~~ 116 (195)
.++||+.|.....++-+- +++..--|. -|..-+ |..++++|++|++|+=+|-+..| +-..-+ +. ....|+
T Consensus 237 ~~dLe~kile~k~kg~~P-f~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHvDAAwGGglLmS~k-~R-~kl~Gi 309 (510)
T KOG0629|consen 237 PDDLEKKILEAKAKGGVP-FFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHVDAAWGGGLLMSRK-HR-HKLTGI 309 (510)
T ss_pred hHHHHHHHHHHHhcCCCC-eEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEeecccccccccChh-hH-hhccCc
Confidence 578888877654332232 233332232 355545 99999999999999999988765 211111 10 112255
Q ss_pred -Ccchhhhc--cccCCCCceEEEEecHH
Q psy13322 117 -SPDIVTMA--KGIANGFPMGAVVTTTE 141 (195)
Q Consensus 117 -~pdi~~~s--K~l~~G~~~g~v~~~~~ 141 (195)
+.+-++.+ |-+|..++.|+.+.+.+
T Consensus 310 era~SvtwnpHK~~gaplqCsa~l~r~~ 337 (510)
T KOG0629|consen 310 ERANSVTWNPHKLMGAPLQCSAFLTREE 337 (510)
T ss_pred cccCceeecHHHhhcCcchhhHHHHHHH
Confidence 34566664 88888888898888875
No 377
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=93.01 E-value=1.6 Score=38.59 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc----cCccccCCCcccccc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ----TGFGRTGDNYWGFEM 113 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~----~g~gr~G~~~~~~~~ 113 (195)
-++++|++.++ +++||+++--. |.-|..- +-+++|+++..++|..|..|-+- -|+-|.|..++-..|
T Consensus 192 VDlddLk~k~~-----~~~AalMiTnP-sT~GvFE---~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~DV~H 262 (496)
T COG1003 192 VDLDDLRAKAE-----DNLAALMITNP-STLGVFE---EDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFDVVH 262 (496)
T ss_pred ccHHHHHHHhc-----cceeEEEeccC-cccccch---hhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccceEE
Confidence 34788888777 47777776543 3345332 33889999999999999999753 344455531111123
Q ss_pred cCCCcchhhhccccCCCCc-eEEEEecHHHHHHhhc----cc---------------cccCCCchHHHHHHHHHHHHhhc
Q psy13322 114 HGVSPDIVTMAKGIANGFP-MGAVVTTTEIAQVLTK----AA---------------HFNTFGGNPVGCVIASTVLDVIK 173 (195)
Q Consensus 114 ~~~~pdi~~~sK~l~~G~~-~g~v~~~~~i~~~l~~----~~---------------~~~t~~~~p~~~~aa~aal~~~~ 173 (195)
+++. -||+-..|||=| .|-|.+.+.+...+-. .. ....+.+|......+.+-+..+-
T Consensus 263 lNLH---KTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~mG 339 (496)
T COG1003 263 LNLH---KTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMMG 339 (496)
T ss_pred eecc---cccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchHHHHHHHHHHHHh
Confidence 3321 144444454444 4556666667665543 10 12233445555556666666665
Q ss_pred chhHH---HHHHHHHHHHHHHhh
Q psy13322 174 DEELQ---YNCKQVSAQIIGYLR 193 (195)
Q Consensus 174 ~~~~~---~~l~~~~~~l~~~L~ 193 (195)
.+++. +..--|..|+..+|+
T Consensus 340 ~~GL~~ase~AvLNANYia~rL~ 362 (496)
T COG1003 340 ADGLKQASEVAVLNANYIARRLK 362 (496)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhh
Confidence 44443 344456778887776
No 378
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=92.52 E-value=2.3 Score=41.65 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=49.3
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC-----
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA----- 128 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~----- 128 (195)
.+++++ -.+++..|.+.+ +++|.++|+++|+++++ =++. ++-.+-. ... .+-.||++. +..|+
T Consensus 234 ~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~-lal~~l~--~pg--e~GADi~vgsgqKwg~P~G~ 302 (993)
T PLN02414 234 DVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDL-LALTMLK--PPG--EWGADIVVGSAQRFGVPMGY 302 (993)
T ss_pred ceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECH-HHhcCCC--CHh--hccCcEEEECCCccccCCCC
Confidence 465555 334556788876 99999999999999998 3332 3222210 111 234466654 23333
Q ss_pred CCCceEEEEecHHHHHHh
Q psy13322 129 NGFPMGAVVTTTEIAQVL 146 (195)
Q Consensus 129 ~G~~~g~v~~~~~i~~~l 146 (195)
||=..|++.+++++.+.+
T Consensus 303 GGP~aGflavr~~~~r~~ 320 (993)
T PLN02414 303 GGPHAAFLATSQEYKRLM 320 (993)
T ss_pred CCCCeeEEEECHHHHhhC
Confidence 342378888888876654
No 379
>PRK05367 glycine dehydrogenase; Provisional
Probab=91.30 E-value=3.5 Score=40.31 Aligned_cols=82 Identities=9% Similarity=0.003 Sum_probs=51.0
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhhc--c---ccC-
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA--K---GIA- 128 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s--K---~l~- 128 (195)
+++++ +-.+++..|.+.+ +++|.++|+++|+++++|=.+..++. .+ ... .+-.||++.+ | .+|
T Consensus 206 ~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~-l~---~pg--e~GaDi~vgs~qkfg~P~g~ 274 (954)
T PRK05367 206 DVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTL-LT---PPG--EMGADIAVGSAQRFGVPMGF 274 (954)
T ss_pred cEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccC-CC---Chh--hcCCCEEEeeCcccCCCCCC
Confidence 56555 4445677898876 99999999999999999875532221 11 011 1234665443 2 223
Q ss_pred CCCceEEEEecHHHHHHhh
Q psy13322 129 NGFPMGAVVTTTEIAQVLT 147 (195)
Q Consensus 129 ~G~~~g~v~~~~~i~~~l~ 147 (195)
||=-.|++.+++++.+.+.
T Consensus 275 GGP~aGflavr~~~~r~lp 293 (954)
T PRK05367 275 GGPHAAYFAVRDAYKRSMP 293 (954)
T ss_pred CCCCEEEEEECHHHHhhCC
Confidence 2322678888888777664
No 380
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=91.12 E-value=4.2 Score=35.94 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE--eccccCc-cccCCCcccccccCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS--DEVQTGF-GRTGDNYWGFEMHGV 116 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~--DEv~~g~-gr~G~~~~~~~~~~~ 116 (195)
+++|++. . + +++++|+++-... .|.... .+++|.+.++++|+++|+ |=+--++ -..|. +
T Consensus 200 ~~~l~~~-~---~-~~~~gv~vQyP~~-~G~~~~---d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe---------~ 261 (450)
T COG0403 200 LDDLESA-D---D-GDVFGVLVQYPNT-FGIVEE---DLRALIEAAHSAGALVIVAADPLALGLLKPPGE---------F 261 (450)
T ss_pred hhhhhhc-c---c-cCeEEEEEecCCC-CCccch---hHHHHHHHHhhcCCEEEEEechhHhhccCCccc---------c
Confidence 4555554 2 1 4889999998754 453333 299999999999998873 3221121 11121 1
Q ss_pred Ccchh-----hhccccC-CCCceEEEEecHHHHHHhhcc----------------------------ccccCCCchHHHH
Q psy13322 117 SPDIV-----TMAKGIA-NGFPMGAVVTTTEIAQVLTKA----------------------------AHFNTFGGNPVGC 162 (195)
Q Consensus 117 ~pdi~-----~~sK~l~-~G~~~g~v~~~~~i~~~l~~~----------------------------~~~~t~~~~p~~~ 162 (195)
-.||+ -||=.+| ||--.|++.++++....+... .-.+..+.|..-+
T Consensus 262 GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLl 341 (450)
T COG0403 262 GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALL 341 (450)
T ss_pred CCceEEecCcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHH
Confidence 12333 4555666 665577888888776655221 0122333443322
Q ss_pred HHHHHHHHhh-cc---hhHHHHHHHHHHHHHHHhhc
Q psy13322 163 VIASTVLDVI-KD---EELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 163 ~aa~aal~~~-~~---~~~~~~l~~~~~~l~~~L~~ 194 (195)
+.+.+.+-.. -. .++.++..+...+|.++|++
T Consensus 342 A~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~ 377 (450)
T COG0403 342 ALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKE 377 (450)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222222 22 45667788888899988874
No 381
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=90.75 E-value=5.8 Score=35.22 Aligned_cols=130 Identities=15% Similarity=0.128 Sum_probs=65.8
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC----
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA---- 128 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~---- 128 (195)
+++++|++.-... -|.+-. +++|.++++++|+++|+ . +..--.+. .-.-..+ -.||++- +|.||
T Consensus 196 ~~~a~v~vq~Pn~-~G~~ed----~~~i~~~~h~~gal~~~--~-ad~~aL~~-l~~Pge~--GADI~vg~~Q~fg~p~~ 264 (429)
T PF02347_consen 196 DDTAAVMVQNPNT-FGVFED----IKEIADIAHAAGALVIV--G-ADPNALGG-LKSPGEY--GADIVVGEHQTFGIPMG 264 (429)
T ss_dssp TTEEEEEEESS-T-TSB--T----HHHHHHHHHHTT-EEEE--C-GGCCGCCT-C--GGGG--T-SEEEECCTTTT---C
T ss_pred cCeEEEEeecCCC-CceEee----HHHHHHHHHHcCCEEEE--e-cCHHHHhC-cCChhhc--CccEEeeCCCCCcccCC
Confidence 4799999887643 454443 99999999999999986 1 22111110 0011112 2366522 36665
Q ss_pred CCCc-eEEEEecHHHHHHhhcc----------------------------ccccCCCchHHHHHH-HHHHHHhhcc---h
Q psy13322 129 NGFP-MGAVVTTTEIAQVLTKA----------------------------AHFNTFGGNPVGCVI-ASTVLDVIKD---E 175 (195)
Q Consensus 129 ~G~~-~g~v~~~~~i~~~l~~~----------------------------~~~~t~~~~p~~~~a-a~aal~~~~~---~ 175 (195)
.|=| .|++.++++++..+... .-.+.++.|..-++. +..-+..+-. .
T Consensus 265 ~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~ 344 (429)
T PF02347_consen 265 FGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLR 344 (429)
T ss_dssp CC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHH
Confidence 2334 56777777776655211 011233444443332 2222233333 4
Q ss_pred hHHHHHHHHHHHHHHHhhc
Q psy13322 176 ELQYNCKQVSAQIIGYLRV 194 (195)
Q Consensus 176 ~~~~~l~~~~~~l~~~L~~ 194 (195)
++-++...+..++.++|++
T Consensus 345 ~iA~~~~~~A~yl~~~L~~ 363 (429)
T PF02347_consen 345 EIAERIHLNAHYLAERLKK 363 (429)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999876
No 382
>smart00642 Aamy Alpha-amylase domain.
Probab=88.78 E-value=2.5 Score=32.41 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=34.6
Q ss_pred CeEEEEEcccCCCCC-------c----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322 55 GAAALIAESIQGVSG-------V----------KEFPRYFLRRAYELIKSNNGLFISDEVQTGF 101 (195)
Q Consensus 55 ~~aavivEpv~s~~G-------~----------~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~ 101 (195)
.+-+|.+-|++.... . ..-+.+.|+++++-|+++|+-+|+|=|....
T Consensus 32 G~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~ 95 (166)
T smart00642 32 GVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHT 95 (166)
T ss_pred CCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 566898888754331 1 1234588999999999999999999876543
No 383
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.97 E-value=1.4 Score=33.81 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCC----HHHHHHHHHHHHHcCCEEEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFP----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~----~~~L~~l~~l~~~~~~llI~ 94 (195)
..++.+++.+.+. .++..||+|++....+.-.-+ ..+++.+.++|+++|+.+|+
T Consensus 127 ~~~~~l~~~~~~~---~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 127 EDLEELEAALKEL---YGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHHHHHHHHTT-------SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred HHHHHHHHHHhhc---CCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4467777777763 246689999988764321111 36899999999999987763
No 384
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=86.25 E-value=1.5 Score=37.63 Aligned_cols=83 Identities=24% Similarity=0.294 Sum_probs=50.9
Q ss_pred HHHHcCCEEEEeccccCccccCCCcccccccCCCcchh--hhccccC-CCCceEEEEecH-HHHHHhhccccccCCCchH
Q psy13322 84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIV--TMAKGIA-NGFPMGAVVTTT-EIAQVLTKAAHFNTFGGNP 159 (195)
Q Consensus 84 l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~--~~sK~l~-~G~~~g~v~~~~-~i~~~l~~~~~~~t~~~~p 159 (195)
+.+.-+..+|-|=+|= -.++..+.. ...-||+ |+||.-| +|.|+||.+..+ ++...+......+|.+.+-
T Consensus 157 V~~g~~~k~I~D~AYY-----WPhyTpI~~-~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~ 230 (363)
T PF04864_consen 157 VLNGSSGKVIHDLAYY-----WPHYTPITA-PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSR 230 (363)
T ss_dssp SSTTTEEEEEEE-TT------STTTS---S--B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--H
T ss_pred hcCCCCcceeeeeeee-----cccccccCC-CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcH
Confidence 3445556678885542 222322221 2344665 6799999 899999999987 5778777777778888888
Q ss_pred HHHHHHHHHHHhh
Q psy13322 160 VGCVIASTVLDVI 172 (195)
Q Consensus 160 ~~~~aa~aal~~~ 172 (195)
=++.-++..|+.+
T Consensus 231 dsQLRa~kiLk~v 243 (363)
T PF04864_consen 231 DSQLRALKILKVV 243 (363)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888765
No 385
>KOG0628|consensus
Probab=86.08 E-value=1 Score=40.11 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF 101 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~ 101 (195)
+.|+++|++....+-+-.+++-++ |.+|.-.. +.|.+|..+|+++|+||=+|-+|+|-
T Consensus 220 ~~L~~AIe~D~arGlIPf~v~at~-GTT~~ca~--D~l~elg~Vc~~~glWLHVDAAYAGs 277 (511)
T KOG0628|consen 220 DTLRKAIEEDIARGLIPFFVCATL-GTTSSCAF--DELEELGPVCREEGLWLHVDAAYAGS 277 (511)
T ss_pred HHHHHHHHHHHhCCCccEEEEEee-cCcccccc--ccHHHhcchhhhcCEEEEeehhhccc
Confidence 667777776544345555555555 55554444 67999999999999999999999963
No 386
>KOG3846|consensus
Probab=85.11 E-value=7.9 Score=33.11 Aligned_cols=56 Identities=14% Similarity=0.006 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
.+++-+.|++.+ +.+|.|.+..||--+|.... +.+|-..-...|+++-+|=+|+ +|
T Consensus 201 teDILd~IEkng--DeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vg 256 (465)
T KOG3846|consen 201 TEDILDTIEKNG--DEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VG 256 (465)
T ss_pred HHHHHHHHHhcC--CeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hc
Confidence 466777777765 68999999999988898776 7777766666799999999998 54
No 387
>KOG1411|consensus
Probab=84.88 E-value=6.3 Score=34.12 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=74.4
Q ss_pred EEEEcc-cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc---cccccc---CCCcc-hhhhccccC-
Q psy13322 58 ALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY---WGFEMH---GVSPD-IVTMAKGIA- 128 (195)
Q Consensus 58 avivEp-v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~---~~~~~~---~~~pd-i~~~sK~l~- 128 (195)
.|+.-. -...+| +-|+.+-+++|.++-++.+.+-++|=+|.|| -.|... ++...+ |..-- --.++|-||
T Consensus 200 ~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGf-aSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGL 277 (427)
T KOG1411|consen 200 IILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGF-ASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGL 277 (427)
T ss_pred EEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhccc-ccCCchhhHHHHHHHHHcCCceEeehhhhhhcch
Confidence 344444 455567 4677888999999999999999999999998 345311 111111 11110 125678888
Q ss_pred CCCceEE---EEecHHHHHHhhccc---cccCCCchHH-HHHHHHHHHHh--h-----cc-hhHHHHHHHHHHHHHHHhh
Q psy13322 129 NGFPMGA---VVTTTEIAQVLTKAA---HFNTFGGNPV-GCVIASTVLDV--I-----KD-EELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 129 ~G~~~g~---v~~~~~i~~~l~~~~---~~~t~~~~p~-~~~aa~aal~~--~-----~~-~~~~~~l~~~~~~l~~~L~ 193 (195)
=|=++|+ ++-+++....+.... .--.++.+|+ +...+...|+- + .+ ..+.+++..+++.|.+.|+
T Consensus 278 YgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~ 357 (427)
T KOG1411|consen 278 YGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALE 357 (427)
T ss_pred hhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhh
Confidence 4445554 333445444443321 1223444444 22222222221 1 11 3456777888888888775
Q ss_pred c
Q psy13322 194 V 194 (195)
Q Consensus 194 ~ 194 (195)
+
T Consensus 358 ~ 358 (427)
T KOG1411|consen 358 K 358 (427)
T ss_pred c
Confidence 4
No 388
>KOG2040|consensus
Probab=82.77 E-value=8.9 Score=35.97 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc----ccCccccCCCcccc--c
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEV----QTGFGRTGDNYWGF--E 112 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv----~~g~gr~G~~~~~~--~ 112 (195)
++.+|+..-+++. ++.||++|.-. |..|..-.. ++++.++..+||.-+.+|-+ |.|+.+.|. + +. .
T Consensus 666 d~~dLk~kaekh~--~~Laa~MvTYP-ST~GvfE~~---i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd-~-GaDV~ 737 (1001)
T KOG2040|consen 666 DMVDLKAKAEKHK--DNLAALMVTYP-STHGVFEEG---IDDICDIIHEHGGQVYLDGANMNAQVGLCRPGD-I-GADVC 737 (1001)
T ss_pred cHHHHHHHHHHhh--hhhheeEEecc-ccccccccc---HHHHHHHHHhcCCEEEecCCCccceecccCCcc-c-cccce
Confidence 4788999888885 58998888653 556665554 88899999999999999974 556666663 2 22 2
Q ss_pred ccCCCcchhhhccccCCCCc-eEEEEecHHHHHHhhccc-----------cccCCCc----hHHHHHHHHHHHHhhcchh
Q psy13322 113 MHGVSPDIVTMAKGIANGFP-MGAVVTTTEIAQVLTKAA-----------HFNTFGG----NPVGCVIASTVLDVIKDEE 176 (195)
Q Consensus 113 ~~~~~pdi~~~sK~l~~G~~-~g~v~~~~~i~~~l~~~~-----------~~~t~~~----~p~~~~aa~aal~~~~~~~ 176 (195)
++++. -||.=..|||-| +|-+.+.+.++..+.... ...+.+. +........+-++.+...+
T Consensus 738 HLNLH---KTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpISwaYikmMG~~G 814 (1001)
T KOG2040|consen 738 HLNLH---KTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPISWAYIKMMGSGG 814 (1001)
T ss_pred eeccc---ceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehhHHHHHHHhcccc
Confidence 22221 023333344433 455555666666553321 1122222 3333444556666654333
Q ss_pred HH---HHHHHHHHHHHHHhh
Q psy13322 177 LQ---YNCKQVSAQIIGYLR 193 (195)
Q Consensus 177 ~~---~~l~~~~~~l~~~L~ 193 (195)
+. +..--|..|+..+|+
T Consensus 815 L~~as~~AiLNaNYMakRLe 834 (1001)
T KOG2040|consen 815 LKDASKIAILNANYMAKRLE 834 (1001)
T ss_pred cchhhHHHhhhhHHHHHHHh
Confidence 22 223345566666664
No 389
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=80.45 E-value=4.4 Score=32.29 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCC-CcccCC-----HHHHHHHHHHHHHcCCEEEE
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVS-GVKEFP-----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~-G~~~~~-----~~~L~~l~~l~~~~~~llI~ 94 (195)
+++|+..+.+...+.++..||||+++... +..... ..+++.|.++|+++|+.+|+
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 34454444432211356789999987652 221111 25688899999999997774
No 390
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=77.91 E-value=11 Score=31.93 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~ 99 (195)
...+.+++|.+.+.+...++++ .|+.=+++. -.+.+++.+|.++|++.|+.+++|=-..
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~-VvlsGSlP~-----g~~~d~y~~li~~~~~~g~~vilD~Sg~ 169 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDI-VVLSGSLPP-----GVPPDAYAELIRILRQQGAKVILDTSGE 169 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCE-EEEeCCCCC-----CCCHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3445567777776663322344 333333443 3467999999999999999999995433
No 391
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=75.54 E-value=24 Score=24.50 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG-LFISDEVQT 99 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~-llI~DEv~~ 99 (195)
....+++|+.+.+..+ ..+..-++=.............+-+++|.++++++++ ++|+|+-.+
T Consensus 6 ~~~~l~El~~L~~t~g--~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Ls 68 (95)
T PF13167_consen 6 FEESLEELEELAETAG--YEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELS 68 (95)
T ss_pred HHHHHHHHHHHHHHCC--CeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCC
Confidence 3466888888888764 3555555544444444556667889999999999987 666775433
No 392
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=75.29 E-value=6.3 Score=31.23 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCC-----Ccc--cCC----HHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVS-----GVK--EFP----RYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~-----G~~--~~~----~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
.++.+++.+.+. .++..||+|++.... +.- ... ..++..|..+|+++++.++ ..++..
T Consensus 102 ~l~~l~~~l~~~---~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~ 171 (235)
T cd01123 102 LLEELEAILIES---SRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTA 171 (235)
T ss_pred HHHHHHHHHhhc---CCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEee
Confidence 345555555543 278899999987531 110 000 2567788899999998665 444443
No 393
>KOG1383|consensus
Probab=74.88 E-value=51 Score=29.65 Aligned_cols=133 Identities=16% Similarity=0.105 Sum_probs=72.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-cCCEEEEeccccCcccc-CCCcccccccCC----Ccchhhhcc--c
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-NNGLFISDEVQTGFGRT-GDNYWGFEMHGV----SPDIVTMAK--G 126 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~~~llI~DEv~~g~gr~-G~~~~~~~~~~~----~pdi~~~sK--~ 126 (195)
++.+++.+.-+-..|.+-+ .++|.++..+ +++.+=+|-.-.||--. |. .....+++ .+-|.+-+- +
T Consensus 218 Nti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~--~~~~~fdFr~p~V~Sisa~~HKYG 291 (491)
T KOG1383|consen 218 NTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFINPAGY--LNEEEFDFRVPGVTSISADGHKYG 291 (491)
T ss_pred ceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCccccccccc--cCccccccCCCCceeEeeccceee
Confidence 6777777766555665444 8999999888 99999999988887442 32 12223333 222333331 2
Q ss_pred cC-CCCceEEEEecH-H-HHHHhhcc-----c--cccCCCc--hHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHH
Q psy13322 127 IA-NGFPMGAVVTTT-E-IAQVLTKA-----A--HFNTFGG--NPVGCVIASTVLDVIKD---EELQYNCKQVSAQIIGY 191 (195)
Q Consensus 127 l~-~G~~~g~v~~~~-~-i~~~l~~~-----~--~~~t~~~--~p~~~~aa~aal~~~~~---~~~~~~l~~~~~~l~~~ 191 (195)
|. .| +++++-+. + +.+.+... . .+.|.++ +-...++..+++=.+.. .+..+++.++...|++.
T Consensus 292 l~~~G--~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~eg 369 (491)
T KOG1383|consen 292 LAPAG--SSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREG 369 (491)
T ss_pred eeecC--cEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 22 34 56777654 2 22222211 1 1223222 22333444455433333 34456677788888888
Q ss_pred hhcC
Q psy13322 192 LRVV 195 (195)
Q Consensus 192 L~~l 195 (195)
|+++
T Consensus 370 ie~i 373 (491)
T KOG1383|consen 370 IENI 373 (491)
T ss_pred hhcc
Confidence 8753
No 394
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=74.21 E-value=16 Score=30.62 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCC--EEEEecccc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG--LFISDEVQT 99 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~--llI~DEv~~ 99 (195)
-+.+++.|++. .++.||++|-.- +.+.|..|.+.|.+.++ .|++|+.+.
T Consensus 136 KE~vR~~I~~A---~kVIAIVMD~FT--------D~dIf~DLleAa~kR~VpVYiLLD~~~~ 186 (284)
T PF07894_consen 136 KEVVRRMIQQA---QKVIAIVMDVFT--------DVDIFCDLLEAANKRGVPVYILLDEQNL 186 (284)
T ss_pred HHHHHHHHHHh---cceeEEEeeccc--------cHHHHHHHHHHHHhcCCcEEEEechhcC
Confidence 47777888876 488899988643 56779999999977775 778999765
No 395
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=72.57 E-value=25 Score=30.08 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHc--CCEEEEeccccCccccCCCcccccccCCC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSN--NGLFISDEVQTGFGRTGDNYWGFEMHGVS 117 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~--~~llI~DEv~~g~gr~G~~~~~~~~~~~~ 117 (195)
.+.+++.+. ++++.|.+---.|-+=--..+-+.++++.++.++- ++++.+|..|..|.-. .+...+-
T Consensus 155 ~~~v~~~i~-----~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~------~EPt~vG 223 (416)
T COG4100 155 IQAVKTAIS-----DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEE------KEPTHVG 223 (416)
T ss_pred HHHHHHhcC-----ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhc------cCccccc
Confidence 566666665 34555555443332211224467788999888874 6888999887765221 1223455
Q ss_pred cchhhh--ccccCCCC--ceEEEEecHHHHHHhh
Q psy13322 118 PDIVTM--AKGIANGF--PMGAVVTTTEIAQVLT 147 (195)
Q Consensus 118 pdi~~~--sK~l~~G~--~~g~v~~~~~i~~~l~ 147 (195)
.|++.= -|--|||+ ..||+.+++++.+...
T Consensus 224 aDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 224 ADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred hhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence 677644 48888886 4689999999888654
No 396
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=70.49 E-value=16 Score=31.57 Aligned_cols=53 Identities=11% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC-CcccCC---HHHHHHHHHHHHHcCCEEEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS-GVKEFP---RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~-G~~~~~---~~~L~~l~~l~~~~~~llI~ 94 (195)
..+..++..+.+.+ ..+||+||+.... |.-... ..|.+..+++|..+++-+|.
T Consensus 181 kl~rRfek~~~Q~r----p~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy 237 (402)
T COG3598 181 KLYRRFEKILEQKR----PDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIY 237 (402)
T ss_pred HHHHHHHHHHHHhC----CCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 44566666666554 4489999987754 544433 68999999999999987775
No 397
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=68.76 E-value=11 Score=32.82 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCC--------CcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVS--------GVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~--------G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
++.+.+.+++. ++..||||+++... |...--.+.+..|.++++++++.+|
T Consensus 147 le~I~~~i~~~----~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvi 204 (372)
T cd01121 147 LEDILASIEEL----KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIF 204 (372)
T ss_pred HHHHHHHHHhc----CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 56666666543 45689999997642 1111123567778999999998654
No 398
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=68.63 E-value=26 Score=30.38 Aligned_cols=73 Identities=11% Similarity=0.242 Sum_probs=50.6
Q ss_pred chhhhc--cccC-CCCceEEEEecHHHHHHhhcc------------ccccCCCch-HHHHHHHHHHHHhhcc----hhHH
Q psy13322 119 DIVTMA--KGIA-NGFPMGAVVTTTEIAQVLTKA------------AHFNTFGGN-PVGCVIASTVLDVIKD----EELQ 178 (195)
Q Consensus 119 di~~~s--K~l~-~G~~~g~v~~~~~i~~~l~~~------------~~~~t~~~~-p~~~~aa~aal~~~~~----~~~~ 178 (195)
|++.+| |-+| .| ++.++.++++.+..... -..++++.+ .++.....-+++.+.. +.+.
T Consensus 192 dviyagaQKnlGpaG--ltvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~ 269 (365)
T COG1932 192 DVIYAGAQKNLGPAG--LTVVIVRPDLLERAESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALE 269 (365)
T ss_pred ceEEEehhhccCccc--eEEEEEcHHHHhcccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456666 9999 67 88899999888776543 134566544 4566666777787754 5667
Q ss_pred HHHHHHHHHHHHHhh
Q psy13322 179 YNCKQVSAQIIGYLR 193 (195)
Q Consensus 179 ~~l~~~~~~l~~~L~ 193 (195)
++-+++.+.|.+.+.
T Consensus 270 ~rn~~ka~~LY~~id 284 (365)
T COG1932 270 ARNQAKAQLLYDWID 284 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888877664
No 399
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=68.41 E-value=18 Score=27.68 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC--C-C--cccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGV--S-G--VKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~--~-G--~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..++.+.+++++++... .....|++.|.... . + ....-..+-+.++++|+++|+.++
T Consensus 89 ~~~~~~nl~~ii~~~~~-~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 89 YTTYKEYLRRYIAEARA-KGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred HHHHHHHHHHHHHHHHH-CCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHhCCCEE
Confidence 45566777777665432 24556777775421 1 1 122345778899999999998774
No 400
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=68.18 E-value=7.7 Score=36.12 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCccccCC
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD 106 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~ 106 (195)
+++.|+++++-|.++|+-||+|=|+..|+..|.
T Consensus 212 tPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~ 244 (628)
T COG0296 212 TPEDFKALVDAAHQAGIGVILDWVPNHFPPDGN 244 (628)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcc
Confidence 578899999999999999999999998987664
No 401
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=66.56 E-value=11 Score=29.95 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=43.9
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc-ccCCCcccccccCCCcch-hhhc
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG-RTGDNYWGFEMHGVSPDI-VTMA 124 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g-r~G~~~~~~~~~~~~pdi-~~~s 124 (195)
-+-+|||.++|.+. .-+.++-...+.+...+.+..+++=++-+|+. .+|. ....-+++|+ +||.
T Consensus 119 ~~dvIVDalfG~G~-~g~lrep~a~~Ie~iN~~~~pivAVDiPSGl~~dtG~----~~~~av~Ad~TVTf~ 184 (203)
T COG0062 119 SADVIVDALFGTGL-SGPLREPFASLIEAINASGKPIVAVDIPSGLDADTGE----VLGAAVKADLTVTFG 184 (203)
T ss_pred cCCEEEEeceecCC-CCCCccHHHHHHHHHHhcCCceEEEeCCCCcCCCCCc----ccCcceeccEEEEec
Confidence 44799999999654 44445557777777779999999999999984 3453 1122356664 4664
No 402
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=65.50 E-value=9.5 Score=30.99 Aligned_cols=39 Identities=5% Similarity=0.013 Sum_probs=26.3
Q ss_pred CeEEEEEcccCCCCCcc---cC----CHHHHHHHHHHHHHcCCEEE
Q psy13322 55 GAAALIAESIQGVSGVK---EF----PRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~---~~----~~~~L~~l~~l~~~~~~llI 93 (195)
++..||||+++...... .. -..++..|..+++++++.++
T Consensus 140 ~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvl 185 (271)
T cd01122 140 GIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHIT 185 (271)
T ss_pred CceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 56689999987653221 11 12456778899999998555
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=64.62 E-value=14 Score=32.82 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC--------CcccCCHHHHHHHHHHHHHcCCEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS--------GVKEFPRYFLRRAYELIKSNNGLF 92 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~--------G~~~~~~~~L~~l~~l~~~~~~ll 92 (195)
..++++.+.+++. +...+|||+||.+. |.+.--++--.+|.+++++.|+.+
T Consensus 155 t~~e~I~~~l~~~----~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~ 213 (456)
T COG1066 155 TNLEDIIAELEQE----KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAI 213 (456)
T ss_pred cCHHHHHHHHHhc----CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeE
Confidence 4477888888865 44589999988753 333333456677889999999876
No 404
>PRK12566 glycine dehydrogenase; Provisional
Probab=64.57 E-value=1.1e+02 Score=30.25 Aligned_cols=81 Identities=9% Similarity=0.078 Sum_probs=45.2
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe-ccccCccccCCCcccccccCCCcchh-----hhcccc
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD-EVQTGFGRTGDNYWGFEMHGVSPDIV-----TMAKGI 127 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~D-Ev~~g~gr~G~~~~~~~~~~~~pdi~-----~~sK~l 127 (195)
+++++|++... +..|.+.. +++|.++++++|+++|+- +..+ ++..-. -- ..-.||+ .||=.+
T Consensus 207 ~~~~~v~vq~P-~~~G~i~d----~~~i~~~~h~~gal~~~~~d~la-L~ll~~----Pg--e~GADI~vG~~Q~fGvp~ 274 (954)
T PRK12566 207 HAVFGALLQYP-DTHGEIRD----LRPLIDQLHGQQALACVAADLLS-LLVLTP----PG--ELGADVVLGSTQRFGVPM 274 (954)
T ss_pred CCEEEEEEECC-CCceEEcc----HHHHHHHHHHcCCEEEEEeCHHH-HhCCCC----hh--hcCCcEEeeCCCcCCCCC
Confidence 36888888543 33566533 899999999999987732 1111 211100 00 1223554 233344
Q ss_pred C-CCCceEEEEecHHHHHHh
Q psy13322 128 A-NGFPMGAVVTTTEIAQVL 146 (195)
Q Consensus 128 ~-~G~~~g~v~~~~~i~~~l 146 (195)
+ ||=-.|++.+++++...+
T Consensus 275 ~~GGP~ag~~a~~~~~~R~~ 294 (954)
T PRK12566 275 GYGGPHAAYFACRDDYKRAM 294 (954)
T ss_pred CCCCCCeeeeeehHHHHhhC
Confidence 4 332367777777776665
No 405
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=64.36 E-value=21 Score=28.61 Aligned_cols=48 Identities=15% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEec
Q psy13322 40 YEQLVNAFQYNVPITGAAALI-AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDE 96 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavi-vEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DE 96 (195)
++.+++.|+ ..+.+|. -|---+ +-.. .+..++++++|++|++.+|+++
T Consensus 24 ~~~ve~al~-----~Gv~~vQlR~K~~~-~~~~---~~~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 24 LEWVEAALK-----GGVTAVQLREKDLS-DEEY---LALAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHh-----CCCeEEEEecCCCC-hHHH---HHHHHHHHHHHHHhCCeEEecC
Confidence 677777777 2333443 333221 1111 4667899999999999888765
No 406
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=63.83 E-value=9.3 Score=31.02 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322 75 RYFLRRAYELIKSNNGLFISDEVQTGF 101 (195)
Q Consensus 75 ~~~L~~l~~l~~~~~~llI~DEv~~g~ 101 (195)
.+.|++|++.|+++|+-||+|=|....
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~NH~ 77 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVPNHT 77 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETSEE
T ss_pred hhhhhhhhhccccccceEEEeeecccc
Confidence 588999999999999999999887533
No 407
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=62.95 E-value=1.2e+02 Score=29.89 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=45.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCcccccccCCCcchhhh-ccccC----C
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM-AKGIA----N 129 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~-sK~l~----~ 129 (195)
++++|++.- ++..|.+.. +++|.++++++|+++|++=-...++..-. -. .+-.||++- +|.|| .
T Consensus 194 ~~~~v~~q~-Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~----Pg--e~GaDi~vg~~q~fg~p~g~ 262 (939)
T TIGR00461 194 DVFGCLLQY-PATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTP----PG--HYGADIVLGSSQRFGVPMGY 262 (939)
T ss_pred CEEEEEEEC-CCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCC----HH--HcCCcEEeeCCCccCCCCCC
Confidence 466666543 344676653 89999999999999998533322211100 01 123355522 35444 2
Q ss_pred CCc-eEEEEecHHHHHHh
Q psy13322 130 GFP-MGAVVTTTEIAQVL 146 (195)
Q Consensus 130 G~~-~g~v~~~~~i~~~l 146 (195)
|=| .|++.+++++.+.+
T Consensus 263 GGP~aG~~a~~~~l~r~l 280 (939)
T TIGR00461 263 GGPHAAFFAVKDEYNRKM 280 (939)
T ss_pred CCCceeeeeecHhhHhhC
Confidence 223 66777777777665
No 408
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=62.94 E-value=17 Score=28.47 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=27.1
Q ss_pred CCeEEEEEcccCCCCCc-cc----------CCHHHHHHHHHHHHHcCCEEEE
Q psy13322 54 TGAAALIAESIQGVSGV-KE----------FPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~-~~----------~~~~~L~~l~~l~~~~~~llI~ 94 (195)
.++..||+|++.+--.. .. .-..++..|..+|+++++.+|+
T Consensus 113 ~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~ 164 (226)
T cd01393 113 GRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVVF 164 (226)
T ss_pred CCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEE
Confidence 47889999998753110 01 0124567789999999987664
No 409
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=62.39 E-value=27 Score=29.38 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC-----C--cccC----CHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS-----G--VKEF----PRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~-----G--~~~~----~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
..++.+++.+.+. .++..||||++.+.- + .... -..++..|..+++++|+.+| .-++.+
T Consensus 184 ~~~~~l~~~i~~~---~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~ 254 (317)
T PRK04301 184 LLAEKAEELIKEG---ENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMA 254 (317)
T ss_pred HHHHHHHHHHhcc---CceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEe
Confidence 3455666666541 378899999987631 1 1000 01356778899999998665 455544
No 410
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=61.34 E-value=26 Score=29.70 Aligned_cols=48 Identities=21% Similarity=0.147 Sum_probs=30.8
Q ss_pred CCeEEEEEcccCCCC-----C--cccC----CHHHHHHHHHHHHHcCCEEE-EeccccCc
Q psy13322 54 TGAAALIAESIQGVS-----G--VKEF----PRYFLRRAYELIKSNNGLFI-SDEVQTGF 101 (195)
Q Consensus 54 ~~~aavivEpv~s~~-----G--~~~~----~~~~L~~l~~l~~~~~~llI-~DEv~~g~ 101 (195)
.++..||||++.+.- | .... -..++..|..+++++++.++ .-.|....
T Consensus 190 ~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~~~ 249 (313)
T TIGR02238 190 EPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQADP 249 (313)
T ss_pred cCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEecC
Confidence 367899999987642 1 1110 12567779999999998655 45555433
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=60.98 E-value=19 Score=29.17 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCC-CCeEEEEEcccCCCCCc--ccCCH----HHHHHHHHHHHHcCCEEEE
Q psy13322 40 YEQLVNAFQYNVPI-TGAAALIAESIQGVSGV--KEFPR----YFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 40 ~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~--~~~~~----~~L~~l~~l~~~~~~llI~ 94 (195)
+++++..+.+.... .++..|+||.++-.... .-... ...++|.++++++++.+|+
T Consensus 114 ~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 114 IDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 44454444432211 47889999998765432 11122 3466789999999999986
No 412
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=60.73 E-value=37 Score=27.72 Aligned_cols=55 Identities=5% Similarity=-0.069 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~ 94 (195)
+.++...+++++...+ . +-+|+=|-.+..|.......+++.+.++|+++++.+|+
T Consensus 23 ~nl~~~~~~i~~a~~~-g-a~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~ 77 (270)
T cd07571 23 ATLDRYLDLTRELADE-K-PDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLT 77 (270)
T ss_pred HHHHHHHHHHhhcccC-C-CCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEE
Confidence 4455555555544321 2 23555454555565555678899999999999998874
No 413
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=60.72 E-value=27 Score=28.59 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-------CCcccCC----HHHHHHHHHHHHHcCCE-EEEeccccC
Q psy13322 37 NKFYEQLVNAFQYNVPITGAAALIAESIQGV-------SGVKEFP----RYFLRRAYELIKSNNGL-FISDEVQTG 100 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-------~G~~~~~----~~~L~~l~~l~~~~~~l-lI~DEv~~g 100 (195)
.+.++.+...+.+ ++++.||||++... .|...-. ...+..|..++++|++. ||.-.+.+.
T Consensus 119 ~~~L~~l~~~l~~----~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~ 190 (256)
T PF08423_consen 119 LELLEQLPKLLSE----SKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTK 190 (256)
T ss_dssp HHHHHHHHHHHHH----SCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSS
T ss_pred HHHHHHHHhhccc----cceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeec
Confidence 3445555555543 47999999998652 1222211 24455688999999975 455666553
No 414
>KOG3843|consensus
Probab=59.37 E-value=19 Score=30.25 Aligned_cols=59 Identities=5% Similarity=-0.143 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQT 99 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~ 99 (195)
--.+++.++..+++.++ +-+-+|...+-. .-+-+++-+++|..+|..|++.-|+..+|.
T Consensus 139 l~tdleav~~~iee~g~-dcilci~sttsc----fapr~pd~leaiaaica~~diphivnnayg 197 (432)
T KOG3843|consen 139 LITDLEAVEAIIEELGE-DCILCIHSTTSC----FAPRSPDNLEAIAAICAAHDIPHIVNNAYG 197 (432)
T ss_pred HHHhHHHHHHHHHHhCC-ceEEEEeecccc----cCCCCCchHHHHHHHHHccCchhhhccccc
Confidence 44568888999988764 234444333211 123346889999999999999999998865
No 415
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=58.75 E-value=11 Score=28.73 Aligned_cols=45 Identities=18% Similarity=0.266 Sum_probs=35.3
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
.-+|||.++|.+ ..-+.++.+.++.+.+.+++..+|+=|+-+|+-
T Consensus 100 ~dlIIDal~G~G-~~~~l~~~~~~~i~~iN~~~~~viAiDiPSGl~ 144 (169)
T PF03853_consen 100 ADLIIDALFGTG-FSGPLRGPIAELIDWINASRAPVIAIDIPSGLD 144 (169)
T ss_dssp ESEEEEES-STT-GGSCGSTCHHHHHHHHHHHCSEEEEESS-TTCB
T ss_pred ccEEEEecccCC-CCCCcCHHHHHHHHHHhccCCcEEEecCCCCcc
Confidence 679999999975 334444568999999999999999999999983
No 416
>PRK11823 DNA repair protein RadA; Provisional
Probab=57.98 E-value=27 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCC--------cccCCHHHHHHHHHHHHHcCCEEEE
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSG--------VKEFPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G--------~~~~~~~~L~~l~~l~~~~~~llI~ 94 (195)
++.+.+.+++. +...||+|+++...- ...--.+.+..|.++++++|+.+++
T Consensus 145 l~~i~~~i~~~----~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvil 203 (446)
T PRK11823 145 LEAILATIEEE----KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFL 203 (446)
T ss_pred HHHHHHHHHhh----CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 45555555543 455899999986421 1111235566789999999985544
No 417
>PF12310 Elf-1_N: Transcription factor protein N terminal; InterPro: IPR022084 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. The family is found in association with PF00178 from PFAM. There is a conserved PAVIVE sequence motif. Elf-1 is an immune cell specific transcription factor. It is found in T cells, B cells, megakaryocytes,and mast cells and is involved in the control of transcription for various immune proteins. These include IL-2, GM-CSF, IL-5, IL-2 receptor alpha chain, and CD4 in T cells, IgH, blk, and lyn in B cells, TdT in T and B cells, IL-3 in megakaryocytes, and SCL and Fc-epsilon-RI alpha chain in mast cells.
Probab=57.24 E-value=11 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=23.1
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR 103 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr 103 (195)
..-|||+|+|+|. +|-.-|-. |..||.++++-.
T Consensus 30 ~~PAVIVE~VP~a---------------~l~~~Ysg-Lv~dde~t~~m~ 62 (108)
T PF12310_consen 30 VFPAVIVEQVPSA---------------DLLQGYSG-LVYDDEPTYMMQ 62 (108)
T ss_pred CCCeEEEeecCch---------------HHhccccc-eEEeecccceEE
Confidence 5669999999873 23334544 888888887743
No 418
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=56.85 E-value=29 Score=31.01 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCC--------CcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVS--------GVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~--------G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
++.+.+.+++. +...||||+++... |...--.+++..|.++++++|+.++
T Consensus 159 ~~~I~~~i~~~----~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvl 216 (454)
T TIGR00416 159 WEQICANIEEE----NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIF 216 (454)
T ss_pred HHHHHHHHHhc----CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEE
Confidence 46666666654 45589999998742 1111124566778899999997443
No 419
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=56.61 E-value=21 Score=31.42 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=27.7
Q ss_pred CeEEEEEcccCCCCCcccC-C-----HHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVKEF-P-----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~-~-----~~~L~~l~~l~~~~~~llI~ 94 (195)
.+..||||+++-+.+.... . ....+.|..+|+++++.+|+
T Consensus 305 ~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ 350 (434)
T TIGR00665 305 GLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIA 350 (434)
T ss_pred CCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 4678999998776432211 1 23347788999999998885
No 420
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=55.72 E-value=37 Score=25.10 Aligned_cols=18 Identities=17% Similarity=0.047 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHcCCEEE
Q psy13322 76 YFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 76 ~~L~~l~~l~~~~~~llI 93 (195)
.+-+.+.++|+++++.++
T Consensus 122 ~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 122 RFAAIYPELAEEYGVPLV 139 (177)
T ss_pred HHHHHHHHHHHHcCCcEe
Confidence 444455556666665444
No 421
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=55.46 E-value=35 Score=28.57 Aligned_cols=63 Identities=13% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-CEEEEecccc
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-GLFISDEVQT 99 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-~llI~DEv~~ 99 (195)
...+++.+.+.|++.... +-.-+++|.+-|.+...-..-+.|+++.+++++.+ +-+++|=.|+
T Consensus 116 ~e~~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~ 179 (280)
T COG0648 116 KEEGLNRIAEALNELLEE-EGVIILLENTAGEGSGKGTQFGELAEIIDLIEEKERIGVCIDTCHA 179 (280)
T ss_pred HHHHHHHHHHHHHHHhhc-cCCeEEEEEeccccCccccchhhHHHHHHhhcccCceEEEEEchhh
Confidence 345566666666554321 11457778888877767777888999999999998 9999999987
No 422
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=55.16 E-value=50 Score=27.66 Aligned_cols=58 Identities=17% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG 105 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G 105 (195)
...+++++.+.+. .+..+-+.|.... ..+.+..+..+.+.|+++|+.+++ |+|.+..+
T Consensus 113 ~a~~E~er~v~~~----gf~g~~l~p~~~~---~~~~~~~~~pi~~~a~~~gvpv~i---htG~~~~~ 170 (293)
T COG2159 113 AAAEELERRVREL----GFVGVKLHPVAQG---FYPDDPRLYPIYEAAEELGVPVVI---HTGAGPGG 170 (293)
T ss_pred HHHHHHHHHHHhc----CceEEEecccccC---CCCCChHHHHHHHHHHHcCCCEEE---EeCCCCCC
Confidence 4567788877753 5667888886432 244445589999999999999998 88765443
No 423
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=54.81 E-value=9.1 Score=32.37 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHH-HcCCEEEEeccccC
Q psy13322 75 RYFLRRAYELIK-SNNGLFISDEVQTG 100 (195)
Q Consensus 75 ~~~L~~l~~l~~-~~~~llI~DEv~~g 100 (195)
...|+.|.++|. .++.+||+||.|..
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhc
Confidence 356888889985 47899999999973
No 424
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=54.51 E-value=15 Score=25.82 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCC-EEEEeccccCc
Q psy13322 74 PRYFLRRAYELIKSNNG-LFISDEVQTGF 101 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~-llI~DEv~~g~ 101 (195)
..+.++.+.+..++++. +||+||+|. +
T Consensus 72 ~~~l~~~~~~~l~~~~~~~lviDe~~~-l 99 (131)
T PF13401_consen 72 SDELRSLLIDALDRRRVVLLVIDEADH-L 99 (131)
T ss_dssp HHHHHHHHHHHHHHCTEEEEEEETTHH-H
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChHh-c
Confidence 35667888888888887 999999998 5
No 425
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.65 E-value=54 Score=24.39 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCeEEEEEcccCCCCCcc---------cCCHHHHHHHHHHHHHcCCEEE
Q psy13322 36 SNKFYEQLVNAFQYN--VPITGAAALIAESIQGVSGVK---------EFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~--~~~~~~aavivEpv~s~~G~~---------~~~~~~L~~l~~l~~~~~~llI 93 (195)
...+.+.++++++.. .. .....|++.|.+...... ..-..+-+.++++|+++++.+|
T Consensus 84 ~~~~~~~l~~~v~~~~~~~-~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~i 151 (191)
T cd01834 84 LEKFKTNLRRLIDRLKNKE-SAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHHHHHHHHHccc-CCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 445566666666654 22 244466777765433221 1123445667788999997776
No 426
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=53.01 E-value=79 Score=28.04 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHHHHhcCCC---CCeEEEEEcc--cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC
Q psy13322 33 CEASNKFYEQLVNAFQYNVPI---TGAAALIAES--IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100 (195)
Q Consensus 33 ~~~~~~~~~~l~~~l~~~~~~---~~~aavivEp--v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g 100 (195)
.+.....++.+++.+++.+=. .++.+||+-| .++..++..+.++-.++|.+++++++.++. |+|++
T Consensus 190 ~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~~~~~lvf--EaHST 260 (420)
T TIGR02810 190 PEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVIDNTPGLVF--EAHST 260 (420)
T ss_pred HHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCCceeecCHHHHHHHHHHHHhCCCcee--ecCCc
Confidence 355666777777777765311 3689999999 355668888999999999999999998776 77763
No 427
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=52.99 E-value=45 Score=27.82 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccC-----------CHHHHHHHHHHHHHcCCEEE-EeccccC
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEF-----------PRYFLRRAYELIKSNNGLFI-SDEVQTG 100 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~-----------~~~~L~~l~~l~~~~~~llI-~DEv~~g 100 (195)
.++.+.+.+.+.. .++..||+|++.+..-.... -..++..|..++++|++.++ .-++.+.
T Consensus 178 lld~l~~~i~~~~--~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~ 249 (310)
T TIGR02236 178 LVEKAEDLIKELN--NPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMAR 249 (310)
T ss_pred HHHHHHHHHHhcC--CCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeec
Confidence 3556666666542 25779999998764211000 01344678889999998654 5555543
No 428
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=52.92 E-value=44 Score=28.08 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCEEEE
Q psy13322 76 YFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 76 ~~L~~l~~l~~~~~~llI~ 94 (195)
++++.|.++|+++++.+|+
T Consensus 88 ~~~~~l~~lAr~~~i~Iv~ 106 (299)
T cd07567 88 EVLQRLSCAARENSIYVVA 106 (299)
T ss_pred HHHHHHHHHHHHhCeEEEe
Confidence 5789999999999998884
No 429
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=52.71 E-value=97 Score=28.36 Aligned_cols=78 Identities=9% Similarity=-0.032 Sum_probs=38.2
Q ss_pred CCCCCCC-CCCcCCCCcc---cccccCCCCccc-------hhHHHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCccc
Q psy13322 5 VYRGIWG-GQRCRYSPIQ---TTRYCSCPLNQC-------EASNKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGVKE 72 (195)
Q Consensus 5 ~~r~~~~-~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~~~ 72 (195)
++||||+ ..+|+.-|++ ..++-...|-.- ++-.+..+.++++ ...++. +++-.++.-.-+ ..
T Consensus 75 p~~cph~~c~~cp~~~~~~~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l-~~~g~~~~kvE~i~~GGTf-----t~ 148 (522)
T TIGR01211 75 PHRCPHGKCLYCPGGPDSENSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQL-EQIGHPVDKVELIIMGGTF-----PA 148 (522)
T ss_pred CccCCCCceEeCCCCCCcCCCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHH-HHhCCCCceEEEEEECCCc-----cc
Confidence 4999998 5777777663 222222222111 1111222223332 222211 244444433322 35
Q ss_pred CCHHHHHHHHHHHHHc
Q psy13322 73 FPRYFLRRAYELIKSN 88 (195)
Q Consensus 73 ~~~~~L~~l~~l~~~~ 88 (195)
.+.++++.+.+.+.++
T Consensus 149 l~~~y~~~fl~~~~~a 164 (522)
T TIGR01211 149 RDLDYQEWFIKRCLNA 164 (522)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6788888888888765
No 430
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=52.30 E-value=20 Score=32.15 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
+.+.|++|++.|+++|+-||+|=|.-..+
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V~NH~~ 107 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVVLNHKA 107 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 46779999999999999999998876544
No 431
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=51.92 E-value=27 Score=27.58 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=36.7
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
.-+|||.++|.| ..-+.++.++++.+...+.+..+|+=|+-+|+-
T Consensus 115 ~dliIDalfGtG-l~~~l~~~~~~~i~~iN~~~~~vlAiDiPSGl~ 159 (205)
T TIGR00197 115 CDVIIDAILGTG-FKGKLREPFKTIVESINELPAPIVSVDIPSGLD 159 (205)
T ss_pred CCEEEEeeecCC-CCCccchHHHHHHHHHHhCCCCeEEEecCCccc
Confidence 359999999955 444556778899999999999999999999983
No 432
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=51.50 E-value=71 Score=25.47 Aligned_cols=40 Identities=5% Similarity=0.122 Sum_probs=26.1
Q ss_pred CeEEEEEcccCCCCCc----ccCCHHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGV----KEFPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~----~~~~~~~L~~l~~l~~~~~~llI~ 94 (195)
+...||+||+.+-.+. ...-..+++.|.++++++|+.+++
T Consensus 111 ~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~ 154 (239)
T cd01125 111 RIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILL 154 (239)
T ss_pred CCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 5668999998653221 111235788888999998876553
No 433
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=51.45 E-value=42 Score=26.19 Aligned_cols=45 Identities=9% Similarity=0.009 Sum_probs=27.4
Q ss_pred CeEEEEEcccCCCCC-cccC----------CHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 55 GAAALIAESIQGVSG-VKEF----------PRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 55 ~~aavivEpv~s~~G-~~~~----------~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
....||+|++....- .... -...+..|..+|+++++.+| .-++..
T Consensus 103 ~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~ 159 (218)
T cd01394 103 KVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYS 159 (218)
T ss_pred CCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEE
Confidence 366899999876420 0000 02334556789999999766 455544
No 434
>KOG1434|consensus
Probab=51.36 E-value=63 Score=27.09 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCeEEEEEcccCCC-------CCcccCC----HHHHHHHHHHHHHcCCEEEE-eccccCc
Q psy13322 34 EASNKFYEQLVNAFQYNVPITGAAALIAESIQGV-------SGVKEFP----RYFLRRAYELIKSNNGLFIS-DEVQTGF 101 (195)
Q Consensus 34 ~~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~-------~G~~~~~----~~~L~~l~~l~~~~~~llI~-DEv~~g~ 101 (195)
+...+.+..|.+.|.++ ++...||||+|.-. -|+..-. .+.+.++..|+++|++-+++ ..+++.+
T Consensus 193 e~qmelv~~L~~~~se~---g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdp 269 (335)
T KOG1434|consen 193 EEQMELVYLLGDFLSEH---GKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDP 269 (335)
T ss_pred HHHHHHHHHHHHHHhhc---CcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCC
Confidence 34556677778888776 48889999998532 1333222 24567788999999987664 5566766
Q ss_pred cc
Q psy13322 102 GR 103 (195)
Q Consensus 102 gr 103 (195)
|.
T Consensus 270 ga 271 (335)
T KOG1434|consen 270 GA 271 (335)
T ss_pred cc
Confidence 54
No 435
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=51.11 E-value=47 Score=25.66 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCC-CcccCC--------HHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVS-GVKEFP--------RYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~-G~~~~~--------~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
++.+.+.+.+ ..+..||+|++.+.- ...... ...+..|..+++++++.++ ..++..
T Consensus 86 ~~~l~~~~~~----~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~ 151 (209)
T TIGR02237 86 IQKTSKFIDR----DSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYT 151 (209)
T ss_pred HHHHHHHHhh----cCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEE
Confidence 4444444443 256689999987531 110101 2334567888999998665 445443
No 436
>KOG0352|consensus
Probab=51.09 E-value=65 Score=29.01 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=35.8
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC-CEEEEeccccCccccCCCcccccccCCCcchhhhc
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNN-GLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMA 124 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~-~llI~DEv~~g~gr~G~~~~~~~~~~~~pdi~~~s 124 (195)
.++..+-|.|-+. .+..|-+-|..|..++- ..+++||+|+ ...-| . +.+||.+++|
T Consensus 112 p~~K~LYITPE~A------At~~FQ~lLn~L~~r~~L~Y~vVDEAHC-VSQWG-----H---DFRPDYL~LG 168 (641)
T KOG0352|consen 112 PTIKMLYITPEGA------ATDGFQKLLNGLANRDVLRYIVVDEAHC-VSQWG-----H---DFRPDYLTLG 168 (641)
T ss_pred CceeEEEEchhhh------hhhhHHHHHHHHhhhceeeeEEechhhh-Hhhhc-----c---ccCcchhhhh
Confidence 4788888888653 34444444555554443 3688999998 32222 1 5689998886
No 437
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=49.82 E-value=39 Score=29.05 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCeEEEEEcccCCCC-------CcccC----CHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 54 TGAAALIAESIQGVS-------GVKEF----PRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 54 ~~~aavivEpv~s~~-------G~~~~----~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
.+++.||||++.+.- |...- -..++..|..++++||+.++ .-.+.+
T Consensus 217 ~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~ 274 (342)
T PLN03186 217 TRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVA 274 (342)
T ss_pred cCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEE
Confidence 478899999987631 11110 12677888999999998654 555544
No 438
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=49.76 E-value=94 Score=27.66 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHHHhcCCC---CCeEEEEEcc--cCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccC
Q psy13322 33 CEASNKFYEQLVNAFQYNVPI---TGAAALIAES--IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100 (195)
Q Consensus 33 ~~~~~~~~~~l~~~l~~~~~~---~~~aavivEp--v~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g 100 (195)
.+.....++.+++.+++.+=. .++.+||+-| -++..++..+.++-.++|.+++++++.++. |+|+.
T Consensus 194 ~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~~~V~~y~~~~A~~Ls~~~~~~~~lvf--EaHST 264 (426)
T PRK15458 194 PDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDHTNVIDYQPEKASALSQMVENYETLVF--EAHST 264 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecCcCccccCHHHHHHHHHHHHhCCCcee--ecCCc
Confidence 355666777777777765311 3688999999 366678889999999999999999998776 77763
No 439
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=49.54 E-value=54 Score=27.99 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC---------Cccc--CC----HHHHHHHHHHHHHcCCEEE-EeccccC
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS---------GVKE--FP----RYFLRRAYELIKSNNGLFI-SDEVQTG 100 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~---------G~~~--~~----~~~L~~l~~l~~~~~~llI-~DEv~~g 100 (195)
+.++.++.+++. ..+..||+|++.+.. |+.. .. ..+|..|..+++++|+.+| .-+++..
T Consensus 120 q~l~~~~~li~~----~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~ 194 (321)
T TIGR02012 120 QALEIAETLVRS----GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREK 194 (321)
T ss_pred HHHHHHHHHhhc----cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceec
Confidence 345555555542 367799999987532 1110 00 1468889999999999765 4555553
No 440
>PRK09505 malS alpha-amylase; Reviewed
Probab=48.29 E-value=54 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.022 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCccc
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFGR 103 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~gr 103 (195)
+.+.|+.|++.|+++|+-||+|=|....++
T Consensus 290 t~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 319 (683)
T PRK09505 290 TEADLRTLVDEAHQRGIRILFDVVMNHTGY 319 (683)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCCcc
Confidence 468899999999999999999999865553
No 441
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=47.98 E-value=55 Score=29.93 Aligned_cols=46 Identities=13% Similarity=-0.061 Sum_probs=33.7
Q ss_pred CeEEEEEcccCCCC----Ccc----------cCCHHHHHHHHHHHHHcCCEEEEeccccC
Q psy13322 55 GAAALIAESIQGVS----GVK----------EFPRYFLRRAYELIKSNNGLFISDEVQTG 100 (195)
Q Consensus 55 ~~aavivEpv~s~~----G~~----------~~~~~~L~~l~~l~~~~~~llI~DEv~~g 100 (195)
.+-+|.+-|++-.. |.- .-+.+.|++|++.|+++|+-||+|=|...
T Consensus 40 G~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH 99 (543)
T TIGR02403 40 GVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNH 99 (543)
T ss_pred CCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccc
Confidence 46689999986532 211 12457899999999999999999976543
No 442
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=47.89 E-value=62 Score=27.89 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC-------CcccC----CHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS-------GVKEF----PRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~-------G~~~~----~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
..+..+...+.+ .++..||||++.+.. |.... -..++..|..+++++|+.++ .-.+.+
T Consensus 208 ~~l~~l~~~i~~----~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~ 277 (344)
T PLN03187 208 NLLLGLAAKMAE----EPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIA 277 (344)
T ss_pred HHHHHHHHHHHh----cCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEE
Confidence 344555555543 367899999987531 11111 12456778899999998665 455544
No 443
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.34 E-value=36 Score=29.53 Aligned_cols=56 Identities=18% Similarity=0.002 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEV 97 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv 97 (195)
.++.++.|++... .... -|+-++....++...-.+.+++|.++|+++|.-+|+|=-
T Consensus 13 ~~~~~~yi~~a~~-~Gf~-~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 13 FEENKAYIEKAAK-YGFK-RIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHHHHHC-TTEE-EEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHHHH-CCCC-EEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 3445555554432 2333 334444444443334457789999999999999999943
No 444
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=46.07 E-value=35 Score=31.21 Aligned_cols=51 Identities=20% Similarity=0.105 Sum_probs=37.0
Q ss_pred CeEEEEEcccCCCC-----Ccc----------cCCHHHHHHHHHHHHHcCCEEEEeccccCccccC
Q psy13322 55 GAAALIAESIQGVS-----GVK----------EFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG 105 (195)
Q Consensus 55 ~~aavivEpv~s~~-----G~~----------~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G 105 (195)
.+-+|.+-||+-.. |.- .-+.+.|++|++.|+++|+-||+|=|+..++..+
T Consensus 124 Gv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~ 189 (542)
T TIGR02402 124 GITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHFGPEG 189 (542)
T ss_pred CCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCCCCcc
Confidence 56688888884322 111 1235789999999999999999999987665443
No 445
>PF13989 YejG: YejG-like protein
Probab=45.96 E-value=57 Score=23.02 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCCCCCCCCC--CCCcCCCCcccccccCCC------CccchhHHHHHHHHHHHHHhcCCCCCeEEEEEcc
Q psy13322 2 HPDVYRGIWG--GQRCRYSPIQTTRYCSCP------LNQCEASNKFYEQLVNAFQYNVPITGAAALIAES 63 (195)
Q Consensus 2 ~p~~~r~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~aavivEp 63 (195)
+|-.||+-=+ +..++.-|.......++. -.+++.+-.-+..|.+.|.+. ++.+.|+|-
T Consensus 9 LPqsYRWlsG~~G~kVEp~p~~~~~~~n~LigLkLLShdg~~aw~im~~L~~sL~ei----qv~~~vvE~ 74 (106)
T PF13989_consen 9 LPQSYRWLSGFAGVKVEPIPLNDADEDNDLIGLKLLSHDGESAWQIMQQLSQSLAEI----QVDCAVVEW 74 (106)
T ss_pred CCccceeccCCcCceeeecCCcCcCcccceEEEEeeCCCChHHHHHHHHHHHHHHHh----cccceEEEe
Confidence 5888988766 444555554333333332 234566777788888888865 566666664
No 446
>PLN03244 alpha-amylase; Provisional
Probab=45.96 E-value=31 Score=33.25 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCcccc
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFGRT 104 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~ 104 (195)
+++.|+.+++.|+++|+-||+|=|+..++..
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~NH~~~d 469 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 469 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCccCCCc
Confidence 4788999999999999999999999876654
No 447
>PRK05409 hypothetical protein; Provisional
Probab=45.36 E-value=30 Score=28.96 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=32.2
Q ss_pred EEEccc-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Q psy13322 59 LIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEV 97 (195)
Q Consensus 59 vivEpv-~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv 97 (195)
|++-++ .|-||.-.+++++|++|.+++++++..+++|-.
T Consensus 58 v~~HGv~LslGs~~~ld~~~L~~l~~l~~~~~~~~vSeHL 97 (281)
T PRK05409 58 LSLHGVSLSLGGAAPLDKDHLKRLKALADRYQPPLVSEHL 97 (281)
T ss_pred EEEcccccccCCCCCCCHHHHHHHHHHHHHHCCCEEEeee
Confidence 455554 345677788999999999999999999999975
No 448
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=45.34 E-value=50 Score=26.03 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=22.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccC
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEF 73 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~ 73 (195)
+++|.+.|++....+++.+|+++ +.+.+|+...
T Consensus 23 ~~~l~~~l~~a~~d~~v~~ivL~-~~s~Gg~~~~ 55 (211)
T cd07019 23 GDTTAAQIRDARLDPKVKAIVLR-VNSPGGSVTA 55 (211)
T ss_pred HHHHHHHHHHHhhCCCceEEEEE-EcCCCcCHHH
Confidence 45666666654433588999997 7777887654
No 449
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=44.60 E-value=34 Score=27.61 Aligned_cols=18 Identities=6% Similarity=0.112 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy13322 176 ELQYNCKQVSAQIIGYLR 193 (195)
Q Consensus 176 ~~~~~l~~~~~~l~~~L~ 193 (195)
.+.+.++.-..++.+.++
T Consensus 216 ~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 216 SLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 445555555556555554
No 450
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=44.59 E-value=61 Score=25.79 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCccc----------CCHHHHHHHHHHHHHcCCEEEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKE----------FPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~----------~~~~~L~~l~~l~~~~~~llI~ 94 (195)
..++.+++.+++...+ .. -+|+=|-....|... ...++++.+.++++++++.+|+
T Consensus 16 ~n~~~i~~~i~~a~~~-ga-~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 80 (254)
T cd07576 16 ANLARLDEAAARAAAA-GA-DLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVV 80 (254)
T ss_pred HHHHHHHHHHHHHHHc-CC-CEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEE
Confidence 3455566666554321 22 245545444444322 2346789999999999998875
No 451
>PRK08760 replicative DNA helicase; Provisional
Probab=44.37 E-value=48 Score=29.85 Aligned_cols=40 Identities=23% Similarity=0.140 Sum_probs=28.0
Q ss_pred CeEEEEEcccCCCC--CcccCC----HHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVS--GVKEFP----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~--G~~~~~----~~~L~~l~~l~~~~~~llI~ 94 (195)
.+..||||.++-+. |..-.. .+..+.|..+|+++++.+|+
T Consensus 339 ~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 384 (476)
T PRK08760 339 DLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIA 384 (476)
T ss_pred CCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 57799999987663 211111 24558888999999998884
No 452
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.32 E-value=66 Score=25.22 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=27.1
Q ss_pred CeEEEEEcccCCCCC-------ccc----CCHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 55 GAAALIAESIQGVSG-------VKE----FPRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 55 ~~aavivEpv~s~~G-------~~~----~~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
++..||+|++.+... ... .-...+..|.++++++++.++ .-++..
T Consensus 107 ~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~ 163 (225)
T PRK09361 107 NVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYS 163 (225)
T ss_pred cccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcccee
Confidence 567899999854211 100 002334558889999999776 444444
No 453
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=44.05 E-value=53 Score=27.82 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=30.2
Q ss_pred CCeEEEEEcccCCCC-----C--ccc----CCHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 54 TGAAALIAESIQGVS-----G--VKE----FPRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 54 ~~~aavivEpv~s~~-----G--~~~----~~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
.++..||||++.+.- | ... .-..++..|..+++++++.++ .-+|.+
T Consensus 190 ~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~ 247 (316)
T TIGR02239 190 SRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVA 247 (316)
T ss_pred CCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEE
Confidence 378899999987641 1 110 012566789999999998655 555554
No 454
>PRK09354 recA recombinase A; Provisional
Probab=44.00 E-value=77 Score=27.42 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCC---------CcccC-C-----HHHHHHHHHHHHHcCCEEEE-ecccc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVS---------GVKEF-P-----RYFLRRAYELIKSNNGLFIS-DEVQT 99 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~---------G~~~~-~-----~~~L~~l~~l~~~~~~llI~-DEv~~ 99 (195)
+.++.++.+++. ..+..||+|++.+.. |+... . ..+|..|..+++++++.+|+ .+++.
T Consensus 125 q~l~i~~~li~s----~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~ 198 (349)
T PRK09354 125 QALEIADTLVRS----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIRE 198 (349)
T ss_pred HHHHHHHHHhhc----CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeee
Confidence 345555555543 367799999987532 11100 0 13477888899999997764 44444
No 455
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=43.80 E-value=91 Score=22.77 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD 95 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~D 95 (195)
.+.|+++++...+ +...+++.|.. ...+..++-+.+.++|++|.-+.++|
T Consensus 66 ~~nl~~ii~~~~~--~~~ivlv~~~~----~~~~~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 66 KDQLDELLDALGP--DRQVYLVNPHV----PRPWEPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred HHHHHHHHHHcCC--CCEEEEEECCC----CcchHHHHHHHHHHHHHHCCCcEEec
Confidence 4666666666532 23445555531 13345666677888899984344444
No 456
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=43.72 E-value=76 Score=22.78 Aligned_cols=57 Identities=12% Similarity=0.100 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCeEEEEEcccCC-CCCc-------ccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQG-VSGV-------KEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 35 ~~~~~~~~l~~~l~~~~~~~~~aavivEpv~s-~~G~-------~~~~~~~L~~l~~l~~~~~~llI 93 (195)
....+.+.++++++...+.. ..+++.+... .... ...-..+-+.+.++|+++++.+|
T Consensus 83 ~~~~~~~~l~~~i~~~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i 147 (179)
T PF13472_consen 83 SPEQYEQNLRRIIEQLRPHG--PVILVSPPPRGPDPRDPKQDYLNRRIDRYNQAIRELAKKYGVPFI 147 (179)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--EEEEEE-SCSSSSTTTTHTTCHHHHHHHHHHHHHHHHHHCTEEEE
T ss_pred cHHHHHHHHHHHHHhhcccC--cEEEecCCCcccccccccchhhhhhHHHHHHHHHHHHHHcCCEEE
Confidence 34556677777777654433 3444444322 2211 22235666777889999988766
No 457
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=42.92 E-value=47 Score=29.07 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=27.6
Q ss_pred CeEEEEEcccCCCCCcccCCH-----HHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPR-----YFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~-----~~L~~l~~l~~~~~~llI~ 94 (195)
.+..||||.++-+.+..-.+. ...+.|..+++++++.+|+
T Consensus 305 ~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~ 349 (421)
T TIGR03600 305 GLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVL 349 (421)
T ss_pred CCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 577899999877653211111 3456788899999998874
No 458
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=42.66 E-value=75 Score=27.18 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCC---------cccC------CHHHHHHHHHHHHHcCCEEEE-eccccCc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSG---------VKEF------PRYFLRRAYELIKSNNGLFIS-DEVQTGF 101 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G---------~~~~------~~~~L~~l~~l~~~~~~llI~-DEv~~g~ 101 (195)
+.++.++.++.. ..+..||+|++.+... +... -..+|..|..+++++++.+|+ -+++..+
T Consensus 120 q~l~i~~~li~s----~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~i 195 (325)
T cd00983 120 QALEIADSLVRS----GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKI 195 (325)
T ss_pred HHHHHHHHHHhc----cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence 335555555442 3677899999865321 1100 025677888889999987664 5555433
No 459
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=42.24 E-value=72 Score=29.27 Aligned_cols=61 Identities=15% Similarity=-0.005 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCC----Ccc----------cCCHHHHHHHHHHHHHcCCEEEEeccccCc
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVS----GVK----------EFPRYFLRRAYELIKSNNGLFISDEVQTGF 101 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~----G~~----------~~~~~~L~~l~~l~~~~~~llI~DEv~~g~ 101 (195)
++.+.+.|..... =.+-+|.+-|++-.. |.- .-+.+.|++|++.|+++|+-||+|=|....
T Consensus 32 l~gi~~~ldyl~~-lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~ 106 (551)
T PRK10933 32 LRGVTQRLDYLQK-LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHT 106 (551)
T ss_pred HHHHHHhhHHHHh-CCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence 4555554443321 156789999986321 211 113577999999999999999999886543
No 460
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.07 E-value=86 Score=23.07 Aligned_cols=57 Identities=7% Similarity=-0.005 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCC-CCeEEEEEcccCCC-CCc--ccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 37 NKFYEQLVNAFQYNVPI-TGAAALIAESIQGV-SGV--KEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~-~G~--~~~~~~~L~~l~~l~~~~~~llI 93 (195)
.++.+.+++++...... .....+++.+.+.. .+. .....++-+.++++|+++++.+|
T Consensus 68 ~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~i 128 (169)
T cd01828 68 EDIVANYRTILEKLRKHFPNIKIVVQSILPVGELKSIPNEQIEELNRQLAQLAQQEGVTFL 128 (169)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 44455555555433210 23445666565442 111 11124566778899999998776
No 461
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=41.90 E-value=70 Score=25.32 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD 95 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~D 95 (195)
.....+++++.+.+. .+.+|-+.+-.+ |....++.....+.++|.++|+.+++-
T Consensus 83 ~~~~~~~l~~~~~~~----g~~Gv~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~pv~~H 136 (273)
T PF04909_consen 83 PEDAVEELERALQEL----GFRGVKLHPDLG--GFDPDDPRLDDPIFEAAEELGLPVLIH 136 (273)
T ss_dssp HHHHHHHHHHHHHTT----TESEEEEESSET--TCCTTSGHCHHHHHHHHHHHT-EEEEE
T ss_pred chhHHHHHHHhcccc----ceeeeEecCCCC--ccccccHHHHHHHHHHHHhhccceeee
Confidence 345678888888643 566788777433 333444444459999999999988844
No 462
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=41.85 E-value=43 Score=31.66 Aligned_cols=29 Identities=10% Similarity=-0.064 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
+.+.|++|++-|+++|+-||+|=|+...+
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV~NHt~ 271 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVVYNHTA 271 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcCCcc
Confidence 35679999999999999999999975443
No 463
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.58 E-value=21 Score=27.55 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=32.7
Q ss_pred CCCcchhhhccccC-CCCceEEEEecHHHHHHhhccccccCCC
Q psy13322 115 GVSPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFG 156 (195)
Q Consensus 115 ~~~pdi~~~sK~l~-~G~~~g~v~~~~~i~~~l~~~~~~~t~~ 156 (195)
.+.||+..+.|+|. .|-|+|+++....+...+.......|.+
T Consensus 112 ~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~~TIG 154 (217)
T COG3155 112 SVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLRLTIG 154 (217)
T ss_pred eeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCceeEEec
Confidence 57999999999999 8899999999888877665443334444
No 464
>PRK05973 replicative DNA helicase; Provisional
Probab=41.12 E-value=65 Score=26.21 Aligned_cols=71 Identities=10% Similarity=0.128 Sum_probs=40.4
Q ss_pred eEEEEEcccCCCCCcccCC--HHHHHHHHHHHHHcCCEE-EEeccccCc-cccCCCcccccccCC--Ccchhhhcccc
Q psy13322 56 AAALIAESIQGVSGVKEFP--RYFLRRAYELIKSNNGLF-ISDEVQTGF-GRTGDNYWGFEMHGV--SPDIVTMAKGI 127 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~--~~~L~~l~~l~~~~~~ll-I~DEv~~g~-gr~G~~~~~~~~~~~--~pdi~~~sK~l 127 (195)
...||||+++........+ ..++..|..+++++|+.+ ++.++..++ ++..+.. ......+ .-|+..|.|..
T Consensus 148 ~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~~~~~P-~laDlR~~~~~d~~~f~~~~ 224 (237)
T PRK05973 148 GTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQIDRSFDPSAKPLP-DIRDVRLPNPLDLSLFDKAC 224 (237)
T ss_pred CCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecCccccccCCCCCC-ChhhcCCCChhhHHHhhhhh
Confidence 4579999998764322221 245566888999999855 467776654 2222211 1121211 33677777765
No 465
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=40.80 E-value=1.4e+02 Score=21.82 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-c-CCEE-EEecccc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS-N-NGLF-ISDEVQT 99 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~-~-~~ll-I~DEv~~ 99 (195)
.++.|.+++++. ++..||+=-..+++|..-......++..+..++ . ++.+ .+||=+|
T Consensus 39 ~~~~l~~li~~~----~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 39 DIEELKKLIEEY----QIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CHHHHHHHHHHC----CECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred HHHHHHHHHHHh----CCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 378999999875 455677766677788877776666666655444 4 8755 5899876
No 466
>PTZ00035 Rad51 protein; Provisional
Probab=40.42 E-value=78 Score=27.09 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCeEEEEEcccCCCC-----C--cccC----CHHHHHHHHHHHHHcCCEEE-EeccccC
Q psy13322 54 TGAAALIAESIQGVS-----G--VKEF----PRYFLRRAYELIKSNNGLFI-SDEVQTG 100 (195)
Q Consensus 54 ~~~aavivEpv~s~~-----G--~~~~----~~~~L~~l~~l~~~~~~llI-~DEv~~g 100 (195)
.++..||||++.+.- | .... -..++..|..+++++++.++ .-++.+.
T Consensus 212 ~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~ 270 (337)
T PTZ00035 212 ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMAD 270 (337)
T ss_pred cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEe
Confidence 478899999987621 1 1110 12467778899999998554 5666553
No 467
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=39.96 E-value=1.2e+02 Score=26.06 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCC-EEEEecccc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNG-LFISDEVQT 99 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~-llI~DEv~~ 99 (195)
..+++|+.+.+..+ .++...++-.............+-+++|.+++++.++ ++|+|+-.+
T Consensus 17 ~~~~E~~~L~~~~~--~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~ 77 (351)
T TIGR03156 17 ESLEELAELAETAG--AEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELS 77 (351)
T ss_pred hhHHHHHHHHHHCC--CEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCC
Confidence 55889999888764 4777777777666666667778889999999999888 888887655
No 468
>PRK12313 glycogen branching enzyme; Provisional
Probab=39.28 E-value=47 Score=30.97 Aligned_cols=48 Identities=15% Similarity=-0.024 Sum_probs=35.1
Q ss_pred CeEEEEEcccCCCC-----Cc----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 55 GAAALIAESIQGVS-----GV----------KEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 55 ~~aavivEpv~s~~-----G~----------~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
.+-+|.+-||+-.. |- ..-+++.|++|++.|+++|+-||+|=|+..++
T Consensus 184 Gv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 184 GYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred CCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 45578888874211 21 22346789999999999999999998876554
No 469
>PRK09165 replicative DNA helicase; Provisional
Probab=38.75 E-value=72 Score=28.88 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=28.2
Q ss_pred CeEEEEEcccCCCCCcc---cCC-----HHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVK---EFP-----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~---~~~-----~~~L~~l~~l~~~~~~llI~ 94 (195)
.+..||||.++-+.... ... ....+.|..+++++++.+|+
T Consensus 341 ~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~ 388 (497)
T PRK09165 341 GLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIA 388 (497)
T ss_pred CCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 57799999987654211 111 24567888999999998884
No 470
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=38.63 E-value=47 Score=30.56 Aligned_cols=35 Identities=31% Similarity=0.245 Sum_probs=28.2
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~ 94 (195)
..++||.| +.+.+|.... +.++.++|++||+.+|.
T Consensus 161 ~PaaVicE-i~~~dG~mar----~~~l~~fA~~h~L~iis 195 (555)
T PRK09319 161 YPAGVICE-IQNPDGSMAR----LPELKEYAKQHGLKLIS 195 (555)
T ss_pred CceEEEEE-EecCCCCccC----HHHHHHHHHHcCCcEEE
Confidence 45789998 5666787777 77888999999998874
No 471
>PLN02978 pyridoxal kinase
Probab=37.94 E-value=73 Score=26.74 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=27.0
Q ss_pred EEEEcccCCCCCcccCCHHHHHHHHH-HHHHcCCEEE-Eeccc
Q psy13322 58 ALIAESIQGVSGVKEFPRYFLRRAYE-LIKSNNGLFI-SDEVQ 98 (195)
Q Consensus 58 avivEpv~s~~G~~~~~~~~L~~l~~-l~~~~~~llI-~DEv~ 98 (195)
.+++||+.+..|....+++..+.+++ ++..-+++.. .+|+.
T Consensus 119 ~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~ 161 (308)
T PLN02978 119 TYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAE 161 (308)
T ss_pred eEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHH
Confidence 47889998877776666666666764 7766665544 34443
No 472
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=37.78 E-value=57 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=29.5
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE-Eecccc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI-SDEVQT 99 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI-~DEv~~ 99 (195)
..++||.|-+ +.+|.... ++++.+++++||+.+| ++|+..
T Consensus 172 ~P~~vicEil-~~dG~ma~----~~~l~~fA~~~~l~iisi~dli~ 212 (230)
T PRK00014 172 RPAGVLCELM-NADGTMMR----GASLERYAAKEGLVALAIDELAA 212 (230)
T ss_pred CceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCcEEEHHHHHH
Confidence 3568888885 45677666 7888899999999887 455543
No 473
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=37.74 E-value=1e+02 Score=26.33 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
+.|+.+++ ..+++||+|. +|.| ..+..+++++.|.++. +.|+.++
T Consensus 224 ~~l~~~~~-----~~~~GiVl~~-~G~G-n~p~~~~~~~~l~~~~-~~Gi~VV 268 (335)
T PRK09461 224 EVVRNFLR-----QPVKALILRS-YGVG-NAPQNPALLQELKEAS-ERGIVVV 268 (335)
T ss_pred HHHHHHHh-----CCCCEEEEcc-CCCC-CCCCCHHHHHHHHHHH-HCCCEEE
Confidence 44555444 2466999999 4544 3444577888887766 4577665
No 474
>PRK05748 replicative DNA helicase; Provisional
Probab=37.50 E-value=70 Score=28.34 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=28.4
Q ss_pred CeEEEEEcccCCCCCccc--CC-----HHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVKE--FP-----RYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~--~~-----~~~L~~l~~l~~~~~~llI~ 94 (195)
.+..||||.++-+.+... .. ....+.|..+|+++++.+|+
T Consensus 314 ~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~ 360 (448)
T PRK05748 314 GLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIA 360 (448)
T ss_pred CCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 577899999887653211 11 13456788999999999885
No 475
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=37.41 E-value=58 Score=25.71 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=26.7
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~ 94 (195)
..++||.|-+- .+|.... ++++.+++++|++.+|.
T Consensus 152 ~p~avi~eil~-~dG~~~~----~~~~~~fA~~~~l~~vs 186 (194)
T PF00926_consen 152 SPVAVICEILD-DDGDMAR----RDELEEFAKKHGLPIVS 186 (194)
T ss_dssp -SBEEEEEBBE-TTSSBHC----HHHHHHHHHHTT-EEEE
T ss_pred CCcEEEEEEeC-CCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 56789999884 4787776 88888999999998883
No 476
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=37.21 E-value=83 Score=25.05 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCEEEE
Q psy13322 76 YFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 76 ~~L~~l~~l~~~~~~llI~ 94 (195)
.+++.+.++++++++.+++
T Consensus 61 ~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 61 PFVSALARLARELGITVVA 79 (255)
T ss_pred HHHHHHHHHHHHcCeEEEE
Confidence 5789999999999998874
No 477
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=37.06 E-value=51 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.8
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..++||.|-+.- +|.... ++++.+++++||+.+|
T Consensus 156 ~Pa~VicEi~~~-dG~mar----~~~~~~fa~~h~l~~i 189 (203)
T COG0108 156 KPAGVICEIMND-DGTMAR----LPELEEFAKEHGLPVI 189 (203)
T ss_pred CCcEEEEEEeCC-CccccC----hHHHHHHHHHcCCcEE
Confidence 567888887753 676666 6778899999999887
No 478
>PTZ00344 pyridoxal kinase; Provisional
Probab=36.88 E-value=75 Score=26.36 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHH---cC--CEEEEeccc
Q psy13322 74 PRYFLRRAYELIKS---NN--GLFISDEVQ 98 (195)
Q Consensus 74 ~~~~L~~l~~l~~~---~~--~llI~DEv~ 98 (195)
+++..+.+.+++++ .+ +.+++|=|.
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~ 117 (296)
T PTZ00344 88 SADILREVLATVKEIKELRPKLIFLCDPVM 117 (296)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEECCcc
Confidence 45666666666642 32 466777554
No 479
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=36.76 E-value=91 Score=23.24 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHcCCEE
Q psy13322 79 RRAYELIKSNNGLF 92 (195)
Q Consensus 79 ~~l~~l~~~~~~ll 92 (195)
+.++++|+++++.+
T Consensus 128 ~~~~~~a~~~~v~~ 141 (183)
T cd04501 128 RWLKDYARENGLLF 141 (183)
T ss_pred HHHHHHHHHcCCCE
Confidence 33445555555433
No 480
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=36.65 E-value=1.3e+02 Score=29.13 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCC---------Ccc-cCC-----HHHHHHHHHHHHHcCCEEE-EeccccCc
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVS---------GVK-EFP-----RYFLRRAYELIKSNNGLFI-SDEVQTGF 101 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~---------G~~-~~~-----~~~L~~l~~l~~~~~~llI-~DEv~~g~ 101 (195)
.++.+++.+++ ..+..||||++.+.. |.. .-. ..+|.+|..+++++|+.+| ..+++..+
T Consensus 126 ~l~~i~~lv~~----~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~ 200 (790)
T PRK09519 126 ALEIADMLIRS----GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKI 200 (790)
T ss_pred HHHHHHHHhhc----CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecC
Confidence 44445554442 478899999987533 111 000 2477889999999998654 56666644
No 481
>KOG3974|consensus
Probab=36.42 E-value=81 Score=26.37 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD 95 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~D 95 (195)
.+.++++|. ++-+|+|=|-.|.+ .+--..+++|.+.+++.++.+++|
T Consensus 92 v~~i~k~L~------RlhavVIGPGLGRd---p~~~k~i~~iley~~~~dvP~VID 138 (306)
T KOG3974|consen 92 VDIIEKLLQ------RLHAVVIGPGLGRD---PAILKEIAKILEYLRGKDVPLVID 138 (306)
T ss_pred HhHHHHHHh------heeEEEECCCCCCC---HHHHHHHHHHHHHHhcCCCcEEEc
Confidence 355555555 66689999877764 223355888999999999999999
No 482
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=36.06 E-value=65 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=25.9
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..++||.|-+ +.+|.... ++++.+++++||+.+|
T Consensus 167 ~p~~vicEil-~~dG~ma~----~~~~~~fA~~~~l~~i 200 (214)
T PRK01792 167 KEAGVICEIT-NDDGTMAR----TPEIVEFAKKFGYAVV 200 (214)
T ss_pred CceEEEEEEe-cCCCCccC----HHHHHHHHHHcCCcEE
Confidence 3467888886 45677666 7778899999999887
No 483
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.04 E-value=1.6e+02 Score=20.96 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=23.6
Q ss_pred CCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 54 ~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..++++++....... .+ -+++.++|+++++.||
T Consensus 71 ~~~agL~i~~~~~~~--~i-----P~~~i~~A~~~~lPli 103 (123)
T PF07905_consen 71 KGAAGLGIKTGRYLD--EI-----PEEIIELADELGLPLI 103 (123)
T ss_pred CCCeEEEEeccCccc--cC-----CHHHHHHHHHcCCCEE
Confidence 378899988753322 22 2567899999999887
No 484
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.95 E-value=1.3e+02 Score=22.51 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCC-CCeEEEEEcccCCCCCc------ccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 37 NKFYEQLVNAFQYNVPI-TGAAALIAESIQGVSGV------KEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 37 ~~~~~~l~~~l~~~~~~-~~~aavivEpv~s~~G~------~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..+.+.+++++++.... .+...|++.|.+-.... ......+-+.+.++|+++++.+|
T Consensus 89 ~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v 152 (188)
T cd01827 89 DDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLI 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEE
Confidence 34445555555432110 24445666664321111 11113456678899999998776
No 485
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=35.87 E-value=2.1e+02 Score=26.65 Aligned_cols=49 Identities=12% Similarity=-0.060 Sum_probs=35.5
Q ss_pred CeEEEEEcccCCCC-----Cc----------ccCCHHHHHHHHHHHHHcCCEEEEeccccCccc
Q psy13322 55 GAAALIAESIQGVS-----GV----------KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGR 103 (195)
Q Consensus 55 ~~aavivEpv~s~~-----G~----------~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr 103 (195)
.+-+|.+-||+-.. |- ..-+++.|++|++.|+++|+-||+|=|+..++.
T Consensus 170 Gvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~ 233 (613)
T TIGR01515 170 GFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPK 233 (613)
T ss_pred CCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCC
Confidence 45688888875321 21 123467899999999999999999999765543
No 486
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=35.26 E-value=1.7e+02 Score=23.15 Aligned_cols=52 Identities=12% Similarity=0.136 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
+++|.+.|++....+++.+|++.- .|.+|......+.-+.|.++ ++.+-.+|
T Consensus 31 ~~~l~~~l~~a~~d~~ik~vvL~~-~s~gg~~~~~~el~~~i~~~-~~~~kpVi 82 (222)
T cd07018 31 LRDLLEALEKAAEDDRIKGIVLDL-DGLSGGLAKLEELRQALERF-RASGKPVI 82 (222)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEEC-CCCCCCHHHHHHHHHHHHHH-HHhCCeEE
Confidence 567777777654335899999985 45566444433333333344 33455554
No 487
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=34.92 E-value=1e+02 Score=25.16 Aligned_cols=45 Identities=20% Similarity=0.048 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEE
Q psy13322 36 SNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLF 92 (195)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~ll 92 (195)
..+.+..|.+.+++ .++.+|+.|+-++. ...+.|..++++.|+-+
T Consensus 191 s~~~l~~l~~~ik~----~~v~~if~e~~~~~--------k~~~~l~~la~~~~~~v 235 (264)
T cd01020 191 SPADIAAFQNAIKN----RQIDALIVNPQQAS--------SATTNITGLAKRSGVPV 235 (264)
T ss_pred CHHHHHHHHHHHHh----CCCCEEEeCCCCCc--------HHHHHHHHHHHHcCCCE
Confidence 34455566665553 36777888876531 33555667777777755
No 488
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=34.77 E-value=69 Score=26.16 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=54.7
Q ss_pred EEEEEcccCCCCCcccCCHHHHHHHHHHHHHcC---CEEEEeccccCccc-cCCCcccccccCCCcch-hhhc--cc-c-
Q psy13322 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNN---GLFISDEVQTGFGR-TGDNYWGFEMHGVSPDI-VTMA--KG-I- 127 (195)
Q Consensus 57 aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~---~llI~DEv~~g~gr-~G~~~~~~~~~~~~pdi-~~~s--K~-l- 127 (195)
+-+|||.++|.| ..-+.++.+.++.+...+.. ..+|+=|+=+|+-- +|. . ...-+++|. +||+ |. +
T Consensus 135 ~dlIIDaLfGtG-l~~~l~~~~~~li~~iN~~~~~~~~viAIDIPSGl~adtG~-~---~~~av~Ad~TvTf~~~K~gl~ 209 (246)
T PLN03050 135 YDVIVDAIFGFS-FHGAPRAPFDTLLAQMVQQQKSPPPIVSVDVPSGWDVDEGD-V---SGTGMRPDVLVSLTAPKLSAK 209 (246)
T ss_pred CCEEEEeccccC-CCCccchHHHHHHHHHHhhccCCCcEEEEeCCCcccCCCCC-c---CCceEeCCEEEEccccccccc
Confidence 359999999965 44455667888888877644 88898889998733 343 1 112356774 4665 32 1
Q ss_pred -CCCC-ceEEEEecHHHHHHhh
Q psy13322 128 -ANGF-PMGAVVTTTEIAQVLT 147 (195)
Q Consensus 128 -~~G~-~~g~v~~~~~i~~~l~ 147 (195)
..|- -.|-+..+.++.+.+.
T Consensus 210 ~~~g~~~~G~v~~~~~~~~~~~ 231 (246)
T PLN03050 210 KFEGRHFVGGRFLPPAIAEKYG 231 (246)
T ss_pred cCCCccceeeEECCHHHHHHhC
Confidence 1232 3566777887777654
No 489
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=34.53 E-value=2e+02 Score=23.03 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy13322 40 YEQLVNAFQ 48 (195)
Q Consensus 40 ~~~l~~~l~ 48 (195)
++.++.++.
T Consensus 119 ~~~i~~~l~ 127 (220)
T PRK08883 119 LHHLEYIMD 127 (220)
T ss_pred HHHHHHHHH
Confidence 344555444
No 490
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=34.33 E-value=1.6e+02 Score=24.83 Aligned_cols=54 Identities=15% Similarity=0.066 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCC----CCC-cc-----cCCHHHHHHHHHHHHHcCCEEEEe
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQG----VSG-VK-----EFPRYFLRRAYELIKSNNGLFISD 95 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s----~~G-~~-----~~~~~~L~~l~~l~~~~~~llI~D 95 (195)
+.-|.+.+...+ -.+..+++||-.- +++ .+ ..+.++++.++.-+..+++++|+|
T Consensus 75 I~~L~~lf~~lg--~~ikw~LiDp~~h~~~Le~l~nV~Li~~f~de~~i~~~r~~~~~~~illISD 138 (300)
T PHA03108 75 IRYLRDHFYSLG--VVIKWMLIDGRKHDPILNGLRDVTLVTRFVDEAYLRRLKKQLHPSKIILISD 138 (300)
T ss_pred HHHHHHHHHhcC--CCeEEEEECCCcccHhhcCCCcEEeeHhhcCHHHHHHHHHhccCCCEEEEEe
Confidence 566667776653 3688999998543 111 11 235667888888888999999999
No 491
>PRK05402 glycogen branching enzyme; Provisional
Probab=34.26 E-value=67 Score=30.56 Aligned_cols=29 Identities=17% Similarity=-0.043 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCcc
Q psy13322 74 PRYFLRRAYELIKSNNGLFISDEVQTGFG 102 (195)
Q Consensus 74 ~~~~L~~l~~l~~~~~~llI~DEv~~g~g 102 (195)
+++.|+.|++.|+++|+-||+|=|...++
T Consensus 313 t~~dfk~lV~~~H~~Gi~VilD~V~NH~~ 341 (726)
T PRK05402 313 TPDDFRYFVDACHQAGIGVILDWVPAHFP 341 (726)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 36789999999999999999998876554
No 492
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.16 E-value=97 Score=25.47 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccCCCCCccc-------CCHHHHHHHHHHHHHcCCEEEE
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKE-------FPRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~-------~~~~~L~~l~~l~~~~~~llI~ 94 (195)
..++.+++++++.... . +=+|+=|-....|... .+..+++.|.++++++++.+|+
T Consensus 15 ~Nl~~~~~~i~~A~~~-g-adlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~ 76 (279)
T cd07579 15 GNLATIDRLAAEAKAT-G-AELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVA 76 (279)
T ss_pred HHHHHHHHHHHHHHHC-C-CCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEE
Confidence 3456666666643211 2 2244445444444321 1235789999999999998874
No 493
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=33.87 E-value=1.2e+02 Score=25.86 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEEEcccC-----CCCCcccCCH-H-HHHHHHHHHHHc-CCEEEEeccccCc
Q psy13322 38 KFYEQLVNAFQYNVPITGAAALIAESIQ-----GVSGVKEFPR-Y-FLRRAYELIKSN-NGLFISDEVQTGF 101 (195)
Q Consensus 38 ~~~~~l~~~l~~~~~~~~~aavivEpv~-----s~~G~~~~~~-~-~L~~l~~l~~~~-~~llI~DEv~~g~ 101 (195)
...+.++++++. .+.+|++=++. ...|...+.+ + ..+.|+.+.++. ++++|.|=..+.+
T Consensus 55 ~l~~~v~~~~~~-----Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~Y 121 (320)
T cd04823 55 ELLKEAEEAVDL-----GIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPY 121 (320)
T ss_pred HHHHHHHHHHHc-----CCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 345556665552 45566666652 2224444332 2 345566666664 7888988776655
No 494
>PRK11835 hypothetical protein; Provisional
Probab=33.82 E-value=1e+02 Score=22.04 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCCCCCCCCC--CCCcCCCCcccccccCCC------CccchhHHHHHHHHHHHHHhcCCCCCeEEEEEcc
Q psy13322 2 HPDVYRGIWG--GQRCRYSPIQTTRYCSCP------LNQCEASNKFYEQLVNAFQYNVPITGAAALIAES 63 (195)
Q Consensus 2 ~p~~~r~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~aavivEp 63 (195)
+|-.||+-=+ ++.++.-|........+. -.+++.+-.-+.+|.+.|.+. ++.+-|+|-
T Consensus 12 LPQsYRW~sG~~G~kVEpip~~~~~~dn~LigLkLLShdg~~aw~vm~~L~~sL~ei----qv~~~ivEw 77 (114)
T PRK11835 12 LPQSYRWSAGFAGSKVEPIPQNGADGDNSLIGLKLLSHDGDNAWSVMQKLSQALSDI----QVPCSVLEC 77 (114)
T ss_pred cCcceeeccCccCceeeeccCCCCCCccceEEEEeecCCChhHHHHHHHHHHHHHhh----cccceEEEe
Confidence 5888888766 455555554333333222 234566777788888888865 566677764
No 495
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=33.77 E-value=1.3e+02 Score=24.06 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccC------------CHHHHHHHHHHHHHcCCEEEE
Q psy13322 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEF------------PRYFLRRAYELIKSNNGLFIS 94 (195)
Q Consensus 39 ~~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~------------~~~~L~~l~~l~~~~~~llI~ 94 (195)
.++.+.+.+.+.... . +-+|+=|-.+..|.... +...++.|.++++++++.+++
T Consensus 18 n~~~~~~~i~~A~~~-g-adlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~ 83 (258)
T cd07578 18 NIERLLALCEEAARA-G-ARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVV 83 (258)
T ss_pred HHHHHHHHHHHHHhC-C-CCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEE
Confidence 345555555543211 2 23555565554453221 124588899999999998774
No 496
>PTZ00276 biotin/lipoate protein ligase; Provisional
Probab=33.75 E-value=57 Score=26.54 Aligned_cols=46 Identities=9% Similarity=0.118 Sum_probs=31.5
Q ss_pred eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCccccCCCc
Q psy13322 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNY 108 (195)
Q Consensus 56 ~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI~DEv~~g~gr~G~~~ 108 (195)
...+++|.+-| +.++++++...-...+.++|++|=-.|-||.|..+
T Consensus 7 ~~i~~~~~v~S-------TN~~ak~~~~~~~~~~~vviA~~QT~GRGR~gR~W 52 (245)
T PTZ00276 7 PNIHFVGEVTS-------TMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTW 52 (245)
T ss_pred ceEEEEeCCCC-------HHHHHHHHHhcCCCCCeEEEECCCCCCCCCCCCcc
Confidence 34677888776 45566665332224568899999888999999744
No 497
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=33.50 E-value=50 Score=26.43 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCCCeEEEEE-cccCC--CCC-cccCCHHHHHHHHHHHHHcCCEEEEecccc
Q psy13322 41 EQLVNAFQYNVPITGAAALIA-ESIQG--VSG-VKEFPRYFLRRAYELIKSNNGLFISDEVQT 99 (195)
Q Consensus 41 ~~l~~~l~~~~~~~~~aaviv-Epv~s--~~G-~~~~~~~~L~~l~~l~~~~~~llI~DEv~~ 99 (195)
++.-+.++..+- .-|...|- +.... .++ .....-+.|+++.+.|+++|+.+|+| .|.
T Consensus 24 ~~~~~~~~~~G~-n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild-~h~ 84 (281)
T PF00150_consen 24 EADFDQLKALGF-NTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD-LHN 84 (281)
T ss_dssp HHHHHHHHHTTE-SEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE-EEE
T ss_pred HHHHHHHHHCCC-CEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE-ecc
Confidence 344444554432 35555555 45442 122 11112356788889999999999997 554
No 498
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.17 E-value=70 Score=28.23 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=28.8
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE-Eecc
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI-SDEV 97 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI-~DEv 97 (195)
..++||.| +.+.+|.... .+.+.++|++|++.+| ++|+
T Consensus 158 ~Paavi~e-i~~~~G~~~~----~~~~~~fA~~~~l~~v~i~dl 196 (402)
T PRK09311 158 QPAGVICE-IVNEDGTMAR----VPELRVFADEHDLALITIADL 196 (402)
T ss_pred CceEEEEE-EecCCCcccc----hHHHHHHHHHcCCeEEEeech
Confidence 45789999 4556787676 7778899999999887 4554
No 499
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=33.00 E-value=76 Score=25.02 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCCeEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q psy13322 40 YEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI 85 (195)
Q Consensus 40 ~~~l~~~l~~~~~~~~~aavivEpv~s~~G~~~~~~~~L~~l~~l~ 85 (195)
+.+|.+.|++....+++.+|++.- .+.+|......+..+.|.++.
T Consensus 27 ~~~l~~~l~~a~~d~~i~~Vvl~~-~s~gg~~~~~~~l~~~l~~~~ 71 (214)
T cd07022 27 YEGIAAAIRAALADPDVRAIVLDI-DSPGGEVAGVFELADAIRAAR 71 (214)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEE-eCCCCcHHHHHHHHHHHHHHh
Confidence 455666555543224788888864 455565444333334444433
No 500
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=32.94 E-value=79 Score=25.10 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=26.0
Q ss_pred CeEEEEEcccCCCCCcccCCHHHHHHHHHHHHHcCCEEE
Q psy13322 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFI 93 (195)
Q Consensus 55 ~~aavivEpv~s~~G~~~~~~~~L~~l~~l~~~~~~llI 93 (195)
..++||.|-+- .+|.... ++++.+++++|++.+|
T Consensus 157 ~p~~vicEil~-~dG~m~~----~~~~~~fA~~~~l~~i 190 (199)
T TIGR00506 157 KPAGVICEMMN-DDGTMAR----KPELMEYAKKHNLKLI 190 (199)
T ss_pred CceEEEEEEeC-CCCCccC----HHHHHHHHHHcCCcEE
Confidence 35688888864 4677666 7778899999999887
Done!