RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13322
(195 letters)
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 181 bits (462), Expect = 2e-55
Identities = 61/137 (44%), Positives = 78/137 (56%), Gaps = 2/137 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG G+ P+ FL+ +L + + L I+DEVQTGFGRTG + FE GV
Sbjct: 224 AAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFAFEHFGV 282
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDIVT+AK + G P+ AVV EI H TFGGNPV C A VLDVI++E
Sbjct: 283 EPDIVTLAKSLGGGLPLSAVVGRAEIMDWPPG-GHGGTFGGNPVACAAALAVLDVIEEEN 341
Query: 177 LQYNCKQVSAQIIGYLR 193
L ++ + L
Sbjct: 342 LLERAAELGEYLRDRLE 358
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 173 bits (442), Expect = 5e-53
Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 3/135 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG GV P +L+ EL + + L I+DEVQTGFGRTG + FE GV
Sbjct: 193 AAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFGV 251
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKD 174
PDIVT+ KG+ G P+GAV+ EI H TFGGNP+ C A VL+V+++
Sbjct: 252 EPDIVTLGKGLGGGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE 311
Query: 175 EELQYNCKQVSAQII 189
E L N ++ +
Sbjct: 312 EGLLENAAELGEYLR 326
>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional.
Length = 1013
Score = 176 bits (448), Expect = 3e-51
Identities = 72/141 (51%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 54 TGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEM 113
G A IAESI V+G P +LR Y ++++ G+ I+DEVQ GFGR G ++W FE
Sbjct: 783 RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFET 842
Query: 114 HGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-AHFNTFGGNPVGCVIASTVLDVI 172
GV PDIVTM K I NG PMGAVVTT EIA +FNTFGGNPV C I VLD+I
Sbjct: 843 QGVVPDIVTMGKPIGNGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDII 902
Query: 173 KDEELQYNCKQVSAQIIGYLR 193
+DE+LQ N ++ ++ LR
Sbjct: 903 EDEDLQRNALEIGNYLLAGLR 923
>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino
acid transport and metabolism].
Length = 404
Score = 159 bits (405), Expect = 2e-47
Identities = 62/137 (45%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG GV P FL+ EL + L I DEVQTG GRTG + +E +GV
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGK-LFAYEHYGV 244
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AK + GFP+GA++ T EIA T H +TFGGNP+ C +A VL+V+ +E
Sbjct: 245 EPDILTLAKALGGGFPIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLLEEG 304
Query: 177 LQYNCKQVSAQIIGYLR 193
L N ++ ++ LR
Sbjct: 305 LLENVREKGEYLLQRLR 321
>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional.
Length = 396
Score = 158 bits (402), Expect = 4e-47
Identities = 66/167 (39%), Positives = 94/167 (56%), Gaps = 13/167 (7%)
Query: 38 KFYEQLVNAFQYNVP----------ITGA-AALIAESIQGVSGVKEFPRYFLRRAYELIK 86
+ +E LV F Y VP IT AA++ E IQG GV + +L+ EL
Sbjct: 155 EGFEPLVEGFIY-VPFNDIEALKAAITDKTAAVMLEPIQGEGGVNPADKEYLQALRELCD 213
Query: 87 SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
N L I DEVQTG GRTG + ++ +G+ PDI+T+AKG+ G P+GAV+ ++A V
Sbjct: 214 ENGILLILDEVQTGMGRTG-KLFAYQHYGIEPDIMTLAKGLGGGVPIGAVLAKEKVADVF 272
Query: 147 TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
T H +TFGGNP+ C A V+++I++E L N +V + LR
Sbjct: 273 TPGDHGSTFGGNPLACAAALAVIEIIEEEGLLENAAEVGEYLRAKLR 319
>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III.
Length = 338
Score = 148 bits (375), Expect = 8e-44
Identities = 67/138 (48%), Positives = 83/138 (60%), Gaps = 7/138 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG GV P FL E+ K + L I+DEVQTGFGRTG + E +GV
Sbjct: 179 AAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFACEHYGV 237
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
+PDI+T+AK + G P+ AV+ T EI Q +H TFGGNP+ C A VLD+I+DE
Sbjct: 238 TPDIMTLAKALTGGLPLSAVLATAEIMQAFHPGSHGGTFGGNPLACAAALAVLDIIEDEN 297
Query: 177 LQYNCKQVSAQIIG-YLR 193
L N AQ G YLR
Sbjct: 298 LLQN-----AQEKGDYLR 310
>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional.
Length = 972
Score = 154 bits (392), Expect = 1e-43
Identities = 61/140 (43%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
G A I E + G +G P +L++ Y +++ G+ I+DEVQ G+GR G +WGFE
Sbjct: 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQ 803
Query: 115 GVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAH-FNTFGGNPVGCVIASTVLDVIK 173
GV PDI+TMAKG+ NG P+GAV+T EIA+ L + F++ GG+PV C I VLDV++
Sbjct: 804 GVVPDIITMAKGMGNGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDVLR 863
Query: 174 DEELQYNCKQVSAQIIGYLR 193
+E+LQ N ++V + L
Sbjct: 864 EEKLQENARRVGDHLKARLE 883
>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine
family. This family of proteins, for which ornithine
aminotransferases form an outgroup, consists mostly of
proteins designated acetylornithine aminotransferase.
However, the two very closely related members from E.
coli are assigned different enzymatic activities. One is
acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an
enzyme of arginine biosynthesis, while another is
succinylornithine aminotransferase, an enzyme of the
arginine succinyltransferase pathway, an
ammonia-generating pathway of arginine catabolism (See
MEDLINE:98361920). Members of this family may also act
on ornithine, like ornithine aminotransferase (EC
2.6.1.13) (see MEDLINE:90337349) and on
succinyldiaminopimelate, like
N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17,
DapC, an enzyme of lysine biosynthesis) (see
MEDLINE:99175097).
Length = 379
Score = 144 bits (366), Expect = 5e-42
Identities = 59/137 (43%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG GV FL+ E+ K + L I DEVQTG GRTG ++ +E +G+
Sbjct: 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYGI 230
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AKG+ G P+GA + E+A+ T H +TFGGNP+ C A VL+VI+ E
Sbjct: 231 EPDIITLAKGLGGGVPIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEVIEKER 290
Query: 177 LQYNCKQVSAQIIGYLR 193
L N K+ L
Sbjct: 291 LLENVKEKGDYFKERLE 307
>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional.
Length = 398
Score = 140 bits (354), Expect = 4e-40
Identities = 57/132 (43%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+ E IQG +GV P +L A E+ + L + DEVQTG GRTG ++ + GV
Sbjct: 185 AAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDGV 243
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
+PD+VT+AKG+ G P+GA + A +LT H +TFGGNPV C A VLD I E
Sbjct: 244 TPDVVTLAKGLGGGLPIGACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDTIASEG 303
Query: 177 LQYNCKQVSAQI 188
L N +++ Q+
Sbjct: 304 LLENAERLGEQL 315
>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional.
Length = 441
Score = 135 bits (343), Expect = 3e-38
Identities = 68/191 (35%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 3 PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
P+ YR WG P A F E + F+ VP AA+I E
Sbjct: 185 PNPYRNPWGI--------------ENPEECGNAVLDFIEDYL--FKKLVPPEEVAAIIVE 228
Query: 63 SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
IQG G P+ F + +L L I DEVQTG GRTG + E GV PDI+T
Sbjct: 229 PIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTG-KMFAIEHFGVEPDIIT 287
Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
+AK IA G P+GAV+ E+ L +H NTFGGNPV A L+ ++ E L N +
Sbjct: 288 LAKAIAGGLPLGAVIGRAELM-FLPPGSHANTFGGNPVAAAAALATLEELE-EGLLENAQ 345
Query: 183 QVSAQIIGYLR 193
++ + L+
Sbjct: 346 KLGEYLRKELK 356
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 134 bits (339), Expect = 7e-38
Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E IQG G++ P FL+ +L N L I DEVQ G GRTG + E GV
Sbjct: 177 AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAGV 235
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
+PDI+ +AKGI GFP+GA + T E A+ +T H +T+GGNP+ + + VLDVI
Sbjct: 236 TPDIMAVAKGIGGGFPLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPG 295
Query: 177 LQYNCKQVSAQIIGYLR 193
N +++ YL+
Sbjct: 296 FLDNVQRMG----LYLK 308
>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional.
Length = 433
Score = 134 bits (339), Expect = 1e-37
Identities = 69/191 (36%), Positives = 100/191 (52%), Gaps = 12/191 (6%)
Query: 14 RCRYSPIQTTRYCS-------CPLNQCE---ASNKFYEQLVNAFQYNVPITGAAALIAES 63
R Y P+ + Y + CP + L + F++ V AA+I E
Sbjct: 157 RKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECL-RDLESLFKHQVTPEEVAAVIIEP 215
Query: 64 IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTM 123
+ G G P+ FL++ E+ + L I DEVQTGFGRTG+ + + GV PDI+T+
Sbjct: 216 VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAA-QTFGVVPDIMTI 274
Query: 124 AKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQ 183
AKGIA+G P+ AVV + E+ + +H TFGGNPV C A L+VIK+E+L N +
Sbjct: 275 AKGIASGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANE 334
Query: 184 VSAQIIGYLRV 194
+ A + L V
Sbjct: 335 MGAYALERLEV 345
>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family.
Members of the seed alignment for this protein family
are the enzyme succinylornithine transaminase (EC
2.6.1.81), which catalyzes the third of five steps in
arginine succinyltransferase (AST) pathway, an
ammonia-releasing pathway of arginine degradation. All
seed alignment sequences are found within arginine
succinyltransferase operons, and all proteins that score
above 820.0 bits should function as succinylornithine
transaminase. However, a number of sequences extremely
closely related in sequence, found in different genomic
contexts, are likely to act in different biological
processes and may act on different substrates. This
model is desigated subfamily rather than equivalog,
pending further consideration, for this reason [Energy
metabolism, Amino acids and amines].
Length = 397
Score = 132 bits (334), Expect = 3e-37
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A+I E IQG GV FL+ EL +N L I DEVQTG GRTG+ Y + +GV+
Sbjct: 182 AVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 240
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
PDI+T AK + GFP+GA++TTTEIA L H T+GGNP+ C +A VLD++ EL
Sbjct: 241 PDILTSAKALGGGFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDLVNTPEL 300
Query: 178 QYNCKQVSAQIIGYL 192
KQ + L
Sbjct: 301 LAGVKQRHDLFVDGL 315
>gnl|CDD|179933 PRK05093, argD, bifunctional
N-succinyldiaminopimelate-
aminotransferase/acetylornithine transaminase protein;
Reviewed.
Length = 403
Score = 131 bits (333), Expect = 5e-37
Identities = 57/135 (42%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A++ E IQG GV FL+ EL +N L I DEVQTG GRTGD + + +GV+
Sbjct: 187 AVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF-AYMHYGVT 245
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
PDI+T AK + GFP+GA++TT EIA H +T+GGNP+ C +A V D+I E+
Sbjct: 246 PDILTSAKALGGGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDIINTPEV 305
Query: 178 QYNCKQVSAQIIGYL 192
K + + L
Sbjct: 306 LEGVKARRQRFVDGL 320
>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase [Coenzyme metabolism].
Length = 449
Score = 128 bits (324), Expect = 2e-35
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA I E + G G+ P +L+R E+ L I+DEV TGFGRTG + E G
Sbjct: 216 AAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTG-KMFACEHAG 274
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
+ PDI+ +AKG+ G+ P+ AV+T+ I + + H +T+ GNP+ C A L
Sbjct: 275 IVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANL 334
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
D++++E+L ++ A + L+
Sbjct: 335 DILEEEDLLERVAEIGAYLQAGLQ 358
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 124 bits (313), Expect = 7e-34
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 3/168 (1%)
Query: 28 CPLNQCEASNKFY--EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELI 85
CP + S K E + F+ V G AAL AE IQG +G+ P + ++ +++
Sbjct: 175 CPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKIL 234
Query: 86 KSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQV 145
+ L + DEVQ+G GRTG ++ E GV PDI+T+ K + G P+ A + EI
Sbjct: 235 DEHGILLVVDEVQSGLGRTG-KWFAIEHFGVEPDIITLGKPLGGGLPISATIGRAEIMDS 293
Query: 146 LTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
L AH T GNPV A V++ I+++ L +++ L
Sbjct: 294 LPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLE 341
>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine
transaminase/acetylornithine transaminase; Provisional.
Length = 406
Score = 120 bits (303), Expect = 1e-32
Identities = 56/132 (42%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A+I E IQG GV + FL+ EL +N L I DEVQTG GRTG+ Y + +GV+
Sbjct: 186 AVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY-AYMHYGVT 244
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
PD++T AK + GFP+GA++TT + A V+T H T+GGNP+ +A VL++I E+
Sbjct: 245 PDVLTTAKALGGGFPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLELINTPEM 304
Query: 178 QYNCKQVSAQII 189
KQ +
Sbjct: 305 LNGVKQRHDWFV 316
>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional.
Length = 425
Score = 118 bits (297), Expect = 1e-31
Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 43 LVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFG 102
L F+ +V AA+I E +QG G P F++ EL + L I+DEVQTGF
Sbjct: 186 LDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFA 245
Query: 103 RTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGC 162
RTG + E H V+ D+ TMAKG+A GFP+ AV EI T+GGNP+G
Sbjct: 246 RTG-KLFAMEHHEVAADLTTMAKGLAGGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGI 304
Query: 163 VIASTVLDVIKDEELQYNCKQVSAQI 188
A VLDVI++E+L Q+ ++
Sbjct: 305 AAAHAVLDVIEEEDLCERANQLGNRL 330
>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional.
Length = 377
Score = 115 bits (291), Expect = 5e-31
Identities = 52/121 (42%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E +QG GV FL+ L K L I DEVQTG GRTG + +E G+
Sbjct: 169 AAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF-AYEQFGL 227
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDIVT+AKG+ NG P+GA++ E+ +H +TFGGNP+ A VL VIK
Sbjct: 228 DPDIVTVAKGLGNGIPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEVLQVIKQPS 287
Query: 177 L 177
Sbjct: 288 F 288
>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein;
Provisional.
Length = 400
Score = 115 bits (291), Expect = 6e-31
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E IQG +GV +L++ YEL K N L I DE+QTG GRTG + GV
Sbjct: 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTG-KLLAHDHEGV 238
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G P+ AV+ ++ V+ H +T+GGNP+ C +A L+V+K+E
Sbjct: 239 KPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEVLKEE 298
Query: 176 ELQYNCKQVSAQIIGYLR 193
+L N +++ L+
Sbjct: 299 KLAENAQRLGEVFRDGLK 316
>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional.
Length = 445
Score = 114 bits (288), Expect = 3e-30
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 3 PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
PD YRG++ ++ L F+ +P A ++ E
Sbjct: 173 PDKYRGMYEE------------------PDANFVEEYLAPLKEMFEKYLPADEVACIVIE 214
Query: 63 SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
+IQG G+ E + Y+ + + LF D++Q G GRTG + ++PD+++
Sbjct: 215 TIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTG-KWSSISHFNITPDLMS 273
Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
K +A G PM A+V EI + L AH T G NPV C A +D+I+DE L
Sbjct: 274 FGKSLAGGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESL 328
>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.
Length = 396
Score = 112 bits (282), Expect = 1e-29
Identities = 50/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +G+ P FL+ A EL K N LFI+DE+QTG GRTG + + V
Sbjct: 188 AAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG-KLFACDWDNV 246
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
+PD+ + K + G FP+ V +I V T +H +TFGGNP+ C ++ L+V+++E
Sbjct: 247 TPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEVLEEE 306
Query: 176 EL 177
+L
Sbjct: 307 KL 308
>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate
transaminase. All members of the seed alignment have
been demonstrated experimentally to act as EC 2.6.1.62,
an enzyme in the biotin biosynthetic pathway. Alternate
names include 7,8-diaminopelargonic acid
aminotransferase, DAPA aminotransferase, and
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase. The gene symbol is bioA in E. coli and
BIO3 in S. cerevisiae [Biosynthesis of cofactors,
prosthetic groups, and carriers, Biotin].
Length = 417
Score = 109 bits (276), Expect = 1e-28
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 9/139 (6%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA I E + QG G++ +P +LR+ EL L I+DE+ TGFGRTG + E G
Sbjct: 197 AAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTG-KLFACEHAG 255
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-----LTKA-AHFNTFGGNPVGCVIASTV 168
V+PDI+ ++KG+ G+ P+ A +TT EI + KA H +T+ GNP+ C A
Sbjct: 256 VTPDILCLSKGLTGGYLPLAATLTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALAS 315
Query: 169 LDVIKDEELQYNCKQVSAQ 187
LD++++E+ ++ AQ
Sbjct: 316 LDLLEEEDWLEQVARIEAQ 334
>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase. This model
describes the final step in the biosynthesis of
ornithine from glutamate via the non-acetylated pathway.
Ornithine amino transferase takes L-glutamate
5-semialdehyde and makes it into ornithine, which is
used in the urea cycle, as well as in the biosynthesis
of arginine. This model includes low-GC bacteria and
eukaryotic species. The genes from two species are
annotated as putative acetylornithine aminotransferases
- one from Porphyromonas gingivalis (OMNI|PG1271), and
the other from Staphylococcus aureus (OMNI|SA0170).
After homology searching using BLAST it was determined
that these two sequences were most closely related to
ornithine aminotransferases. This model's seed includes
one characterized hit, from Bacillus subtilis
(SP|P38021).
Length = 401
Score = 109 bits (275), Expect = 1e-28
Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A I E IQG +GV +L++ EL +N L I+DE+QTG GRTG + V
Sbjct: 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTG-KLLCVDHENV 246
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G P+ AV+ ++ + H +T+GGNP+ C +A L+V+++E
Sbjct: 247 KPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEVLEEE 306
Query: 176 EL 177
+L
Sbjct: 307 KL 308
>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase.
Length = 382
Score = 104 bits (262), Expect = 6e-27
Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+ E +QG G+ + FL+ L L + DEVQ G GRTG W E +GV
Sbjct: 169 AAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHEAYGV 227
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AK +A G P+GAV+ T ++A + H +TF G P+ C A VLD I
Sbjct: 228 EPDIMTLAKPLAGGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKISKPG 287
>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional.
Length = 375
Score = 104 bits (260), Expect = 1e-26
Identities = 48/121 (39%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E +QG SGV + F++ + + L I DEVQTG GRTG Y FE +G+
Sbjct: 167 AAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY-AFEHYGI 225
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI T+AKG+ANG P+GA++ + + +H +TFGGN + AS LD++
Sbjct: 226 EPDIFTLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASATLDIMLTAG 285
Query: 177 L 177
Sbjct: 286 F 286
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 104 bits (260), Expect = 2e-26
Identities = 52/142 (36%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA+I E IQG GV P +L +L L I DEVQTG GRTG + E
Sbjct: 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTG-KMFACEHE 289
Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDV 171
V PDI+ +AK + G P+GA + T E+ VL H TFGGNP+ C A ++V
Sbjct: 290 NVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINV 349
Query: 172 IKDEELQYNCKQVSAQIIGYLR 193
+ ++ L +Q ++ R
Sbjct: 350 LLEQNLPAQAEQKGDYLLDGFR 371
>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional.
Length = 449
Score = 103 bits (259), Expect = 3e-26
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE +QG GV P F E+ + L I+DEV TGFGRTG +++G GV
Sbjct: 215 AAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTG-SWFGSRGWGV 273
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
PDI+ +AKGI +G P+GA + IA A H T+ G+PV C A
Sbjct: 274 KPDIMCLAKGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALAT 333
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
LD++ E+L N + A ++ L+
Sbjct: 334 LDIVVREDLPANAAKRGAYLLEGLQ 358
>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 103 bits (258), Expect = 4e-26
Identities = 56/141 (39%), Positives = 76/141 (53%), Gaps = 9/141 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG G FL E + N +FI+DEVQTGF RTG ++ E G+
Sbjct: 221 AAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEGI 279
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN----TFGGNPVGCVIASTVLDVI 172
PD++T AKGIA G P+ AV EI A H T+GGNPV C A ++ I
Sbjct: 280 VPDLITTAKGIAGGLPLSAVTGRAEIMD----APHPGGLGGTYGGNPVACAAALAAIETI 335
Query: 173 KDEELQYNCKQVSAQIIGYLR 193
++++L +Q+ A + LR
Sbjct: 336 EEDDLVARARQIEALMTDRLR 356
>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated.
Length = 456
Score = 102 bits (256), Expect = 9e-26
Identities = 47/126 (37%), Positives = 73/126 (57%), Gaps = 6/126 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E IQG GV P + + + + L ++DEV GFGRTG ++G + G+
Sbjct: 221 AAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGSQHFGI 279
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-TKAAHFN---TFGGNPVGCVIASTVLDV 171
PD++T+AKG+ +G+ PMGAV +A+VL + FN T+ G+PV +A L +
Sbjct: 280 KPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339
Query: 172 IKDEEL 177
++DE +
Sbjct: 340 LRDEGI 345
>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional.
Length = 466
Score = 100 bits (252), Expect = 3e-25
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 11/157 (7%)
Query: 39 FYEQLVNAFQYNVPITGA---AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISD 95
F + LV+ F+ + GA AA IAE I G GV P + R E+ + + L+ISD
Sbjct: 201 FCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISD 260
Query: 96 EVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLT----KAA 150
EV TGFGR G + + G+ PDI+T AKG+ +G P+GAV+ + + V++ K
Sbjct: 261 EVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDVISGPNAKGN 320
Query: 151 HFN---TFGGNPVGCVIASTVLDVIKDEELQYNCKQV 184
F T+ G+PV C A +++++ E L + ++V
Sbjct: 321 VFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREV 357
>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase;
Provisional.
Length = 445
Score = 99.2 bits (248), Expect = 1e-24
Identities = 56/159 (35%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 45 NAFQYNVPITGA------------------AALIAESIQGVSGVKEFPRYFLRRAYELIK 86
NAF P GA AA+I E + G +GV P+ +L+R E+
Sbjct: 190 NAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICD 249
Query: 87 SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANG-FPMGAVVTTTEIAQV 145
+ L I DEV TGFGR G + E GV+PDI+T AKG+ NG PMGAV+ + EI
Sbjct: 250 KHGILLIFDEVITGFGRLGAAF-AAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDA 308
Query: 146 LTKAA-------HFNTFGGNPVGCVIASTVLDVIKDEEL 177
+ H T+ +PV C LD+ ++E+L
Sbjct: 309 FMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDL 347
>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase,
prokaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known bacterial examples of the enzyme.
The best archaeal matches are presumed but not trusted
to have the equivalent function. The degree of sequence
difference between this set and known eukaryotic
(mitochondrial) examples is greater than the distance to
some proteins known to have different functions, and so
separate models are built for prokaryotic and eukaryotic
sets. E. coli has two isozymes. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 420
Score = 98.8 bits (246), Expect = 1e-24
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AAL+ E +QG G + F+ + + + +FI+DEVQTGF RTG + E G
Sbjct: 199 AALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTG-AMFACEHEGP 257
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD++T AK +A+G P+ V EI T+ GNP+ C A VL +I+ E
Sbjct: 258 EPDLITTAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIESEG 317
Query: 177 LQYNCKQVSAQI 188
L +Q+ +
Sbjct: 318 LIERARQIGRLV 329
>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated.
Length = 425
Score = 98.7 bits (246), Expect = 1e-24
Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 1/139 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E +QG G F++R L + + I+DEVQTG GRTG + E GV
Sbjct: 201 AAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTG-TLFAMEQMGV 259
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
+ D+ T AK IA GFP+ V E+ + T+ GNP+ C A VL V + E
Sbjct: 260 AADLTTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQEN 319
Query: 177 LQYNCKQVSAQIIGYLRVV 195
L + ++ L +
Sbjct: 320 LLQKANALGEKLKDGLLAI 338
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 98.7 bits (246), Expect = 1e-24
Identities = 51/137 (37%), Positives = 75/137 (54%), Gaps = 2/137 (1%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A + E IQG +GV P + R EL +NN I DE+QTG GRTG E G+
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG-KLLAEEHEGIE 248
Query: 118 PDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
D+ + K ++ GF P+ AV++ +E+ VL H +TFGGNP+ C +A L V+ +E
Sbjct: 249 ADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKVLTEEG 308
Query: 177 LQYNCKQVSAQIIGYLR 193
+ N ++ A + LR
Sbjct: 309 MIENAAEMGAYFLEGLR 325
>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 423
Score = 97.6 bits (244), Expect = 4e-24
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA I E +QG G+ + +L + + L I DE+ TGFGRTG + E G
Sbjct: 201 AAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF-ACEQAG 259
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-----TKA-AHFNTFGGNPVGCVIASTV 168
VSPDI+ ++KG+ G+ P+ A + T EI + KA H ++ NP+ C A+
Sbjct: 260 VSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANAS 319
Query: 169 LDVIKDEELQYNCKQVSAQI 188
LD+ +DE + +SA +
Sbjct: 320 LDLFEDEPVLERVAALSAGL 339
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 96.6 bits (240), Expect = 9e-24
Identities = 56/162 (34%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 40 YEQLVNAFQY----NVP------ITG-AAALIAESIQGVSGVKEFPRYFLRRAYELIKSN 88
YE L F+Y +V G AA++ E IQG GV FL R L +
Sbjct: 161 YEPLPGGFRYVDFNDVEALEAAMAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQH 220
Query: 89 NGLFISDEVQTGFGRTGD--NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
+ L + DE+Q G GRTG +W + V+PDIVT+AK + GFP+GA++ ++A+ +
Sbjct: 221 DALLVLDEIQCGMGRTGTLFAHWQEQ---VTPDIVTLAKALGGGFPIGAMLAGPKVAETM 277
Query: 147 TKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
AH TFGGNP+ +A L + ++ N + SA +
Sbjct: 278 QFGAHGTTFGGNPLAAAVARVALRKLASPQIAANVARQSAAL 319
>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated.
Length = 451
Score = 96.6 bits (241), Expect = 1e-23
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E I GV P+ +++ E+ + + L ISDEV GFGRTG + GF +GV
Sbjct: 215 AAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAF-GFMNYGV 273
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
PDI+TMAKGI + + P+ A EI + H NTFGGNP C +A L
Sbjct: 274 KPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNL 333
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
+++++E L Q+ ++ L+
Sbjct: 334 EIMENENLIERSAQLGELLLEQLK 357
>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase;
Provisional.
Length = 364
Score = 95.4 bits (237), Expect = 2e-23
Identities = 46/121 (38%), Positives = 67/121 (55%), Gaps = 6/121 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG G+ F++ +L + L I+DEVQ+G RTG + E + V
Sbjct: 164 AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTG-KFLAIEHYKV 221
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDIVTM KGI NG P+ +T ++ + H +TFGGNP+ C + L +++ E
Sbjct: 222 EPDIVTMGKGIGNGVPVSLTLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRILRRER 277
Query: 177 L 177
L
Sbjct: 278 L 278
>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase;
Provisional.
Length = 442
Score = 95.6 bits (238), Expect = 3e-23
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 9/129 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E + G +GV P+ +L+R E+ + L I DEV TGFGR G + + GV
Sbjct: 217 AAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPF-AAQYFGV 275
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEI-------AQVLTKAAHFNTFGGNPVGCVIASTV 168
+PD++T AKG+ NG PMGAV ++EI + + H T+ G+P+ C A
Sbjct: 276 TPDLLTCAKGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALAT 335
Query: 169 LDVIKDEEL 177
LD+ + E L
Sbjct: 336 LDLYEREGL 344
>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed.
Length = 451
Score = 93.7 bits (233), Expect = 1e-22
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 1/152 (0%)
Query: 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
E+ N F V AA++ E +QG G + F++ + + LF++DE+QTG
Sbjct: 205 EEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTG 264
Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
F RTG Y+ E V PD++T++K + G P+ V+ EI T+ G+P+
Sbjct: 265 FARTG-KYFAIEHFDVVPDLITVSKSLGAGVPISGVIGRKEIMDESAPGELGGTYAGSPL 323
Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYL 192
GC A VLD+I+ E L ++ ++
Sbjct: 324 GCAAALAVLDIIEKENLNDRAIELGKVVMNRF 355
>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional.
Length = 421
Score = 93.3 bits (232), Expect = 1e-22
Identities = 51/146 (34%), Positives = 73/146 (50%), Gaps = 1/146 (0%)
Query: 47 FQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD 106
F+ ++ AA++ E IQG G P F+ L + L I+DEVQTGF RTG
Sbjct: 190 FKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTG- 248
Query: 107 NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIAS 166
+ E + V PD++TMAK + G P+ AVV E+ T+ GNP+ A
Sbjct: 249 KLFAMEYYDVKPDLITMAKSLGGGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAAL 308
Query: 167 TVLDVIKDEELQYNCKQVSAQIIGYL 192
VLDVI +E+L + A ++ L
Sbjct: 309 AVLDVIAEEKLCQRALILGAHLVEVL 334
>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 459
Score = 93.3 bits (232), Expect = 2e-22
Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 28 CPLN-----QCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAY 82
CPL +A ++E + + V AA+I E+IQG GV P +L++
Sbjct: 195 CPLGIGGEAGVKALTYYFENFIEDVESGV--RKPAAVILEAIQGEGGVNPAPVEWLQKIR 252
Query: 83 ELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEI 142
E+ + + L I DEVQ GF RTG + FE G+ PDI+ M+K + G P+ AV+ +
Sbjct: 253 EVTQKHGILLIVDEVQAGFARTGK-MFAFEHAGIEPDIIVMSKAVGGGLPL-AVLGIKKE 310
Query: 143 AQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQ 183
H TF GN + T L ++K+E L N +
Sbjct: 311 FDAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAE 351
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase [Central intermediary metabolism,
Other].
Length = 442
Score = 93.1 bits (231), Expect = 2e-22
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 5/169 (2%)
Query: 28 CPLN-QCEASNKFYEQLVNAFQYNVP--ITGAAALIAESIQGVSGVKEFPRYFLRRAYEL 84
CP EA + + F +V + AA+I E+IQG GV P +L++ E+
Sbjct: 176 CPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREV 235
Query: 85 IKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ 144
+ ++ I DEVQ GFGR+G + FE G+ PD V M+K + G P+ AV+
Sbjct: 236 TRKHDIKLILDEVQAGFGRSG-TMFAFEHAGIEPDFVVMSKAVGGGLPL-AVLLIAPEFD 293
Query: 145 VLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
A H TF GN + V + L+ KD+ L N ++ +I +L
Sbjct: 294 AWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLD 342
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 91.8 bits (228), Expect = 6e-22
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV P +L+ EL +N L I+DE+QTG RTG + V
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTG-KMLACDWEEV 284
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PD+V + K + G P+ AV+ ++ + H +TFGGNP+ +A L V++DE
Sbjct: 285 RPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQVVQDE 344
Query: 176 EL 177
+L
Sbjct: 345 KL 346
>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 460
Score = 91.7 bits (228), Expect = 6e-22
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 10/130 (7%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA+I E +QG G+ P+ +L+ L N LFI+DEV TGFGRTG + E
Sbjct: 225 AAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMF-ACEHEN 283
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
V+PDI+T KG+ G+ P+ VTT EI H +++ GNP+GC +A
Sbjct: 284 VTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALA 343
Query: 168 VLDVIKDEEL 177
L++ + L
Sbjct: 344 NLELYEKTNL 353
>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional.
Length = 457
Score = 90.4 bits (224), Expect = 2e-21
Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 17/192 (8%)
Query: 2 HPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVN-AFQYNVPITGAAALI 60
+P+ YR WG Y E N+F + L N F + VP AAL
Sbjct: 182 YPNPYRNPWGING--YEEPD------------ELINRFLDYLENYVFSHVVPPDEVAALF 227
Query: 61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
AE IQG +G+ P F + +L+ + L + DEVQTG GRTG ++ E V PD+
Sbjct: 228 AEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTG-KWFASEWFEVKPDL 286
Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
+ KG+A+G + V+ E+ LT + T NPV A L++I++E L N
Sbjct: 287 IIFGKGVASGMGLSGVIGRKELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKN 345
Query: 181 CKQVSAQIIGYL 192
+V I L
Sbjct: 346 ALKVGEFIKKRL 357
>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional.
Length = 395
Score = 90.1 bits (224), Expect = 2e-21
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 2/115 (1%)
Query: 58 ALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS 117
A++ E +QG GV R F+++ L K + L I DEVQTG GRTG + +E+ G+
Sbjct: 182 AVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTG-TLFAYELSGIE 240
Query: 118 PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI 172
PDI+T+ KGI G P+ A++ E+A V T+ GNP+ + V+ +
Sbjct: 241 PDIMTLGKGIGGGVPLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAVISQL 294
>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 429
Score = 89.8 bits (223), Expect = 2e-21
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AALI E + QG G+ + +L +A EL L I DE+ TGFGRTG + E G
Sbjct: 208 AALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTG-KLFALEHAG 266
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
V PDI+ + K + G+ + A +TT IAQ + H TF NP+ C IA+ +
Sbjct: 267 VVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESI 326
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
++ + Q N +++ AQ+ L
Sbjct: 327 RLLLESPWQQNIQRIEAQLKQELA 350
>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional.
Length = 451
Score = 89.7 bits (223), Expect = 3e-21
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ ES+ G +G+ P +L EL + + I+DEV GFGRTG ++ E GV
Sbjct: 216 AAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHFGV 274
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHFN--TFGGNPVGCVIASTVLDVIK 173
PD++T AKG+ +G+ P+G V + IA + T+ G+P+ C A ++ ++
Sbjct: 275 VPDLITFAKGVNSGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAME 334
Query: 174 DEELQYNCKQVSAQIIG 190
+E + N ++ A+++G
Sbjct: 335 EEGIVENAARIGAEVLG 351
>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase.
Length = 504
Score = 88.3 bits (219), Expect = 1e-20
Identities = 43/138 (31%), Positives = 76/138 (55%), Gaps = 9/138 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE + G GV P + + ++K + LFI+DEV FGR G + G + + +
Sbjct: 262 AAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMF-GCDKYNI 320
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTV 168
PD+V++AK +++ + P+GAV+ + EI+ V+ AH T+ G+PV C +A
Sbjct: 321 KPDLVSLAKALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEA 380
Query: 169 LDVIKDEELQYNCKQVSA 186
L + K+ + + +++
Sbjct: 381 LKIYKERNIPEHVNKIAP 398
>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional.
Length = 459
Score = 86.6 bits (215), Expect = 3e-20
Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA E IQG GV P+ +L+ E + LF++DEV TGFGRTG + E GV
Sbjct: 217 AAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF-ACEAEGV 275
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
PD++T+AKG+ +G+ PMGAV+ + + Q + A H T+ +PV + V
Sbjct: 276 VPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEV 335
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
L + + L N ++ + L
Sbjct: 336 LRLYHEGGLLANGQKAGPRFAAGLD 360
>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional.
Length = 460
Score = 85.4 bits (212), Expect = 1e-19
Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E + G GV P+ + + +++ + L ++DEV GFGRTG N +G E G+
Sbjct: 220 AAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG-NMFGCETFGI 278
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKA-------AHFNTFGGNPVGCVIASTV 168
PDI+ M+K +++ P+ AV+ ++ + H T G+PV +A
Sbjct: 279 KPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALEN 338
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
L +I++ +L N + A++ LR
Sbjct: 339 LAIIEERDLVGNAAERGARLQARLR 363
>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase. Members of
this family are putrescine aminotransferase, as found in
Escherichia coli, Erwinia carotovora subsp. atroseptica,
and closely related species. This pyridoxal phosphate
enzyme, as characterized in E. coli, can act also on
cadaverine and, more weakly, spermidine [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 442
Score = 84.7 bits (209), Expect = 2e-19
Identities = 49/124 (39%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E IQG GV P +L L L I DEVQTG GRTG + E GV
Sbjct: 226 AAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF-ACEHEGV 284
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
PDI+ +AK + G P+GA + T + VL H TFGGNP+ C A ++ +
Sbjct: 285 QPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELL 344
Query: 174 DEEL 177
++ L
Sbjct: 345 EKNL 348
>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional.
Length = 421
Score = 82.0 bits (202), Expect = 2e-18
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 47 FQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGD 106
F+ ++ AA+I E +QG G P+ + L + + I+DEVQ+GF RTG
Sbjct: 190 FKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTG- 248
Query: 107 NYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIAS 166
+ + + PD++TMAK +A G P+ VV I T+ GNP+ A
Sbjct: 249 KLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAH 308
Query: 167 TVLDVIKDEEL 177
VL++I E L
Sbjct: 309 AVLNIIDKESL 319
>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Validated.
Length = 428
Score = 80.9 bits (200), Expect = 3e-18
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA+I E I QG G++ + +L+R +L L I+DE+ TGFGRTG + E G
Sbjct: 206 AAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTG-KLFACEHAG 264
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVL 169
++PDI+ + K + G + A +TT E+A+ ++ H TF GNP+ C +A+ L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASL 324
Query: 170 DVIKDEELQYNCKQVSAQI 188
+++ + Q + AQ+
Sbjct: 325 SLLESGDWQQQVAAIEAQL 343
>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 422
Score = 81.0 bits (200), Expect = 4e-18
Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 35 ASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFIS 94
+S + + + + + + T AA +I +QG G++ + L ++ L I+
Sbjct: 181 SSPQEISEYLRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIA 240
Query: 95 DEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA--- 150
DE+ TGFGRTG + GV+PDI+ + K + GF A + T ++AQ+++
Sbjct: 241 DEIATGFGRTG-ELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNGGG 299
Query: 151 ---HFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQII 189
H TF NP+ C +A L++I+ + K++ A++I
Sbjct: 300 ALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELI 341
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 80.1 bits (198), Expect = 7e-18
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE + G G+ P + ++K + L I+DEV TGFGR G + G + +G+
Sbjct: 222 AAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMF-GSDHYGI 280
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
PD++T+AKG+ + + P+ + ++ VL + + H T+ G+P+ A
Sbjct: 281 EPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALAN 340
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
LD+++ E L N +V A Y R
Sbjct: 341 LDILERENLVGNAAEVGA----YFR 361
>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional.
Length = 460
Score = 79.3 bits (196), Expect = 1e-17
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+ E +Q G P + R E+ + L +SDEV FGR G+ +G E G
Sbjct: 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERFGY 281
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDV 171
PDI+T AKGI +G+ P+GA++ + + + H TFGG+PV +A LD+
Sbjct: 282 VPDIITCAKGITSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI 341
Query: 172 IKDEEL 177
+ E L
Sbjct: 342 FEREGL 347
>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 472
Score = 79.3 bits (195), Expect = 1e-17
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 58 ALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
ALI E +Q G++ +LRRA EL ++ I+DE+ TGFGRTG + E GV
Sbjct: 239 ALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTG-TLFACEQAGV 297
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
PD++ ++KG+ GF P+ AV+ T ++ + H +++ GNP+ C A L
Sbjct: 298 MPDLLCLSKGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATL 357
Query: 170 DVIKDEEL 177
D+ D+++
Sbjct: 358 DIFADDDV 365
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 78.8 bits (195), Expect = 2e-17
Identities = 50/144 (34%), Positives = 74/144 (51%), Gaps = 9/144 (6%)
Query: 57 AALIAESIQGVS--GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA +AE++ G + V P YF +R E+ L I DEV G GRTG + E
Sbjct: 201 AAFVAETVVGATAGAVPPVPGYF-KRIREVCDRYGVLLILDEVMCGMGRTG-TLFACEED 258
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
GV+PD+VT+AKG+ G+ P+GAV+ + I + + H +T+ G+ C A V
Sbjct: 259 GVAPDLVTIAKGLGAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQ 318
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
VI ++ L N + Q+ LR
Sbjct: 319 RVIAEDGLLANVRARGEQLRARLR 342
>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional.
Length = 443
Score = 78.5 bits (194), Expect = 3e-17
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A IAE IQG G F F EL ++ L I DEVQTG G TG W ++ GV
Sbjct: 227 ACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGV 285
Query: 117 SPDIVTMAK-----GIANGFPMGAVVTTTEIA-QVLTKAAHFN-TFGGNPVGCVIASTVL 169
PDIV K GI G V E+ V ++ N T+GGN V V A +L
Sbjct: 286 RPDIVAFGKKTQVCGIMAG---RRV---DEVEDNVFAVSSRINSTWGGNLVDMVRARRIL 339
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
+VI+++ L N + ++ L
Sbjct: 340 EVIEEDGLVENAARQGEYLLARLE 363
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 78.2 bits (193), Expect = 3e-17
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 57 AALIAESIQGVSG--VKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
AA IAE I G +G V Y+ + E+ + LFI+DEV TG GRTG + E
Sbjct: 201 AAFIAEPIIGAAGAAVVPPKGYY-KVIKEICDHYDILFIADEVMTGLGRTGAMF-AMEHW 258
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAAHF----NTFGGNPVGCVIASTVL 169
GV PDI+T+ KG+ G+ P+ A V + + + + + + +T NP+ A VL
Sbjct: 259 GVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVL 318
Query: 170 DVIKDEEL 177
+ ++ L
Sbjct: 319 EYMEKHNL 326
>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate
aminotransferase; Provisional.
Length = 464
Score = 77.8 bits (192), Expect = 5e-17
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E +QG GV P +LR + + I DE+Q+GFGRTG + FE G+
Sbjct: 233 AAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTG-KMFAFEHAGI 291
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD+V ++K I P+ AVV E AH TF GN + S L IK+
Sbjct: 292 IPDVVVLSKAIGGSLPL-AVVVYREWLDTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHR 350
Query: 177 LQYNCKQVSAQIIGYLR 193
L + + ++ +LR
Sbjct: 351 LAEHAAAMGERLREHLR 367
>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional.
Length = 460
Score = 76.8 bits (189), Expect = 1e-16
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +AE QG G+ P + + + + L +DEV GFGRTG+ ++ E G
Sbjct: 224 AGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFGF 282
Query: 117 SPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKA----AHFNTFGGNPVGCVIASTVLDV 171
PD +++AKG+ +G+ PMG +V + IA+ L + AH T+ G+PV +A L
Sbjct: 283 EPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA 342
Query: 172 IKDE 175
++DE
Sbjct: 343 LRDE 346
>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase. Characterized members
of this protein family are L-lysine 6-transaminase, also
called lysine epsilon-aminotransferase (LAT). The
immediate product of the reaction of this enzyme on
lysine, 2-aminoadipate 6-semialdehyde, becomes
1-piperideine 6-carboxylate, or P6C. This product may be
converted subsequently to pipecolate or
alpha-aminoadipate, lysine catabolites that may be
precursors of certain seconary metabolites.
Length = 431
Score = 76.3 bits (188), Expect = 1e-16
Identities = 52/138 (37%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A IAE IQG G F FLR L ++ L I DEVQTG G TG W ++ GV
Sbjct: 220 ACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTG-TAWAYQQLGV 278
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFN-TFGGNPVGCVIASTVLDVIKD 174
PDIV K M A E+A V + N T+GGN V V A+ +L++I++
Sbjct: 279 QPDIVAFGKKTQVCGIM-AGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEE 337
Query: 175 EELQYNCKQVSAQIIGYL 192
E L N + A ++ L
Sbjct: 338 ERLVDNARVQGAHLLARL 355
>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 466
Score = 75.6 bits (186), Expect = 3e-16
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 10/139 (7%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA+I E IQG G++ + +L+ E I DE+ GFGRTG + E G
Sbjct: 216 AAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTG-TMFACEQAG 274
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQV-------LTKAAHFNTFGGNPVGCVIAST 167
+ PD + ++K + G+ P+ AV+TT + Q L H +++ GNP+ C A
Sbjct: 275 IRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALA 334
Query: 168 VLDVIKDEELQYNCKQVSA 186
LD+ + + + N + ++
Sbjct: 335 TLDIFEQDNVIENNRALAR 353
>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate
aminotransferase. Members of this family of class III
pyridoxal-phosphate-dependent aminotransferases are
diaminobutyrate--2-oxoglutarate aminotransferase (EC
2.6.1.76) that catalyze the first step in ectoine
biosynthesis from L-aspartate beta-semialdehyde. This
family is readily separated phylogenetically from
enzymes with the same substrate and product but involved
in other process such as siderophore (SP|Q9Z3R2) or
1,3-diaminopropane (SP|P44951) biosynthesis. The family
TIGR00709 previously included both groups but has now
been revised to exclude the ectoine biosynthesis
proteins of this family. Ectoine is a compatible solute
particularly effective in conferring salt tolerance
[Cellular processes, Adaptations to atypical
conditions].
Length = 412
Score = 75.0 bits (185), Expect = 4e-16
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E++QG G+ +L+R +L + ++ L I D++Q G GRTG ++ FE G+
Sbjct: 196 AAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTG-TFFSFEPAGI 254
Query: 117 SPDIVTMAKGIA-NGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVI-KD 174
PDIV ++K I+ G P+ + E+ V H TF GN + V A+ L+ D
Sbjct: 255 EPDIVCLSKSISGYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSD 313
Query: 175 EELQYNCKQVSAQIIGYLR 193
+ + ++ S I L
Sbjct: 314 DAFEKAVQRKSEIIQERLD 332
>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate
aminotransferase; Validated.
Length = 425
Score = 73.7 bits (182), Expect = 1e-15
Identities = 40/103 (38%), Positives = 60/103 (58%), Gaps = 3/103 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E++QG G+ +L+R +L + ++ L I D++Q G GRTG ++ FE G+
Sbjct: 200 AAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAGI 258
Query: 117 SPDIVTMAKGI-ANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
+PDIVT++K I G PM V+ E+ V H TF GN
Sbjct: 259 TPDIVTLSKSISGYGLPMALVLIKPEL-DVWKPGEHNGTFRGN 300
>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme
metabolism].
Length = 432
Score = 73.4 bits (181), Expect = 1e-15
Identities = 48/156 (30%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
P N EA E+ + ++ AA+I E + G GV FL EL +
Sbjct: 182 LPYNDLEA----LEEAFEEYGDDI-----AAVIVEPVAGNMGVVPPEPGFLEGLRELTEE 232
Query: 88 NNGLFISDEVQTGFGRTGDN-YWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
+ L I DEV TGF R G+ +GV PD+ T+ K I G P+GA EI + L
Sbjct: 233 HGALLIFDEVITGF-RVALGGAQGY--YGVEPDLTTLGKIIGGGLPIGAFGGRAEIMEQL 289
Query: 147 TKAAHF---NTFGGNPVGCVIASTVLDVIKDEELQY 179
T GNP+ L+ + EE Y
Sbjct: 290 APLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVY 325
>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional.
Length = 459
Score = 72.4 bits (178), Expect = 4e-15
Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 7/126 (5%)
Query: 55 GAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH 114
G A IAE+++ V+ + + +R E+ +N L I DE+ G GRTG+ ++ + +
Sbjct: 229 GIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAY 286
Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTT--EIAQVLTKAAHFNTFGGNPVGCVIASTVLDV 171
G+ PDI+ + KG+ G P+ A++T A ++ H+ T +P+GC A ++V
Sbjct: 287 GIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQIS-LGHY-THEKSPLGCAAALATIEV 344
Query: 172 IKDEEL 177
I+ E L
Sbjct: 345 IEQEGL 350
>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase,
eukaryotic type. This enzyme is a class III
pyridoxal-phosphate-dependent aminotransferase. This
model describes known eukaryotic examples of the enzyme.
The degree of sequence difference between this set and
known bacterial examples is greater than the distance
between either set the most similar enzyme with distinct
function, and so separate models are built for
prokaryotic and eukaryotic sets. Alternate names include
GABA transaminase, gamma-amino-N-butyrate transaminase,
and beta-alanine--oxoglutarate aminotransferase [Central
intermediary metabolism, Other].
Length = 464
Score = 71.8 bits (176), Expect = 7e-15
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
E L+ +++ P+ AA+I E IQ G F R+ ++ K +N FI DEVQTG
Sbjct: 242 EDLIK--KWHKPV---AAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTG 296
Query: 101 FGRTGDNYWGFEMHGVS--PDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
G TG +W E + PD+VT +K F + FNT+ G+
Sbjct: 297 VGATG-KFWAHEHWNLDDPPDMVTFSK----KFQTAGYFFHDPAFRPNKPYRQFNTWMGD 351
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQV 184
P +I ++ IK ++L N V
Sbjct: 352 PSRALILREIIQEIKRKDLLENVAHV 377
>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase. This
enzyme, glutamate-1-semialdehyde-2,1-aminomutase
(glutamate-1-semialdehyde aminotransferase, GSA
aminotransferase), contains a pyridoxal phosphate
attached at a Lys residue at position 283 of the seed
alignment. It is in the family of class III
aminotransferases [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 423
Score = 67.7 bits (166), Expect = 1e-13
Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 14/154 (9%)
Query: 27 SCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIK 86
P N EA E++ + + A +I E + G GV FL L +
Sbjct: 176 VLPYNDLEA----LEEVFEEYGEEI-----AGVIVEPVAGNMGVVPPKPEFLAGLRALTE 226
Query: 87 SNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVL 146
L I DEV TGF R E GV PD+ T+ K I G P+GA EI + L
Sbjct: 227 EYGSLLIFDEVMTGF-RVALGGAQ-EYFGVEPDLTTLGKIIGGGLPVGAFGGRREIMERL 284
Query: 147 T---KAAHFNTFGGNPVGCVIASTVLDVIKDEEL 177
T GNP+ L ++ +E +
Sbjct: 285 APEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGV 318
>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 426
Score = 57.4 bits (140), Expect = 4e-10
Identities = 40/113 (35%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 57 AALIAESIQGVSGV----KEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112
AA+I E + G GV F LR EL + L I DEV TGF R
Sbjct: 199 AAVIVEPVAGNMGVVPPKPGFLE-GLR---ELCDEHGALLIFDEVMTGF-RVALGGA-QG 252
Query: 113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPV 160
+GV+PD+ T+ K I G P+GA EI + L A T GNP+
Sbjct: 253 YYGVTPDLTTLGKIIGGGLPVGAFGGRREIMEQLAPLGPVYQA--GTLSGNPL 303
>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase.
Length = 474
Score = 56.7 bits (137), Expect = 9e-10
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH-G 115
AA+I E + G SG + FL E+ K N L + DEV TGF R Y G + + G
Sbjct: 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIA--YGGAQEYFG 304
Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNP 159
++PD+ T+ K I G P+GA EI +++ A T GNP
Sbjct: 305 ITPDLTTLGKVIGGGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNP 351
>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate
transaminase; Provisional.
Length = 453
Score = 55.5 bits (134), Expect = 2e-09
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 9/145 (6%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AALI E +Q +G+ +LR L I+DE+ G GRTG ++ E G
Sbjct: 223 AALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTG-TFFACEQAG 281
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTV 168
V PD + ++KGI+ G+ P+ V++ I H +++ GNP+ C A
Sbjct: 282 VWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALAT 341
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
LD+ ++++ + SA++ L
Sbjct: 342 LDLFAEDDVLARNARKSARLRAALA 366
>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 428
Score = 48.5 bits (116), Expect = 6e-07
Identities = 42/126 (33%), Positives = 52/126 (41%), Gaps = 13/126 (10%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGF----GRTGDNYWGFE 112
AA++ E I G G+ E FL EL L I DEV T F G D
Sbjct: 202 AAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLL---- 257
Query: 113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIA-QV--LTKAAHFNTFGGNPVGCVIASTVL 169
GV PD+ + K I G P+GA +I QV L A T GNP L
Sbjct: 258 --GVEPDLTALGKIIGGGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACL 315
Query: 170 DVIKDE 175
+V++ E
Sbjct: 316 EVLQQE 321
>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase;
Provisional.
Length = 431
Score = 45.8 bits (109), Expect = 4e-06
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 42 QLVNAFQYNVPITGAAALIAESIQGVSGV-------KEFPRYFLRRAYELIKSNNGLFIS 94
L F+YN I AL + ++ V E FL L N LFI
Sbjct: 164 ALTVTFRYN-DIASLEALFEDHPGRIACVILEPATADEPQDGFLHEVRRLCHENGALFIL 222
Query: 95 DEVQTGFGRTGDNYWGF----EMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQ 144
DE+ TGF W +++G+ PD+ K + NGF + A+ E +
Sbjct: 223 DEMITGF------RWHMRGAQKLYGIVPDLSCFGKALGNGFAVSALAGKREYME 270
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 41.6 bits (98), Expect = 1e-04
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 11/133 (8%)
Query: 57 AALIAES-IQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTG-DNYWGFEMH 114
AALI E + G G+ F R ++ +S I DEV TG R G ++ W E+
Sbjct: 586 AALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAW--ELL 643
Query: 115 GVSPDIVTMAKGIANGF-PMGAVVTTTEIAQV------LTKAAHFNTFGGNPVGCVIAST 167
G PDI AK + G P+ A + T E+ + L H +++ +P+GC A+
Sbjct: 644 GCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAK 703
Query: 168 VLDVIKDEELQYN 180
L KD N
Sbjct: 704 ALQWYKDPSTNPN 716
>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated.
Length = 453
Score = 37.6 bits (88), Expect = 0.002
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Query: 77 FLRRAYELIKSNNGLFISDEVQT------GFGRTGDNYWGFEMHGVSPDIVTMAKGIANG 130
F EL + L + DE T G+ R HG+ PD + + K IA G
Sbjct: 240 FHEALRELTRRYGTLLVIDETHTISSGPGGYTRA---------HGLEPDFLVVGKPIAGG 290
Query: 131 FPMGAVVTTTEIA 143
P + E+A
Sbjct: 291 VPCAVYGFSAELA 303
>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase;
Provisional.
Length = 433
Score = 35.5 bits (82), Expect = 0.013
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 77 FLRRAYELIKSNNGLFISDEVQTGF--GRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMG 134
F+ + + L I DEV TGF + G ++ V PDI K + G P
Sbjct: 223 FIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAA----AIYHVKPDITVYGKILGGGLPAA 278
Query: 135 AVVTTTEIAQVLT---KAAHFNTFGGNPV 160
AVV I L T GNP+
Sbjct: 279 AVVAHKSIMDHLAPEGTIFQAGTLSGNPL 307
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 33.5 bits (77), Expect = 0.032
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A ++ GV L+ ++ K L + D G E
Sbjct: 94 ALIVITPNTTSGGV----LVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGG-- 147
Query: 117 SPDIVTMA--KGIANGFPMGAVVT 138
D+VT + K + G G V+
Sbjct: 148 -ADVVTFSLHKNL-GGEGGGVVIV 169
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 32.7 bits (75), Expect = 0.11
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 9/104 (8%)
Query: 73 FPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWG---FEMHGVSPDIV-TMAK--G 126
L + +L K +N L + DE GF + G + +V + +K G
Sbjct: 159 ATLEELEKLLDLAKEHNILLLVDEAYAGFVFGSLDAVATRALLAEGPNLLVVGSFSKAFG 218
Query: 127 IANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLD 170
+A G+ +G ++ + L K A A+ L
Sbjct: 219 LA-GWRVGYILGNAAVISQLRKLARPFYSST--HLQAAAAAALS 259
>gnl|CDD|234179 TIGR03355, VI_chp_2, type VI secretion protein, EvpB/VC_A0108
family. Work by Mougous, et al. (2006), describes
IAHP-related loci as a type VI secretion system
(PMID:16763151). This protein family is associated with
type VI secretion loci, although not treated explicitly
by Mougous, et al [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 473
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 152 FNTFGGNPVGCVIASTVLDV-IKDEELQYNCKQVSA 186
+ TFGG P G +I +D EL N +V+A
Sbjct: 133 YGTFGGEPFGALIGDYEFSHSPQDVELLRNMSKVAA 168
>gnl|CDD|235854 PRK06703, PRK06703, flavodoxin; Provisional.
Length = 151
Score = 27.8 bits (62), Expect = 2.3
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 33 CEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRA 81
CEA F E+LV V L E+ + V F F +
Sbjct: 99 CEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147
>gnl|CDD|184349 PRK13824, PRK13824, replication initiation protein RepC;
Provisional.
Length = 404
Score = 27.9 bits (63), Expect = 3.6
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 113 MHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGG 157
M GVSP A + MG IA +L +A H N+ GG
Sbjct: 330 MLGVSPSAYQEACEV-----MGPENAAIVIACILERAGHINSAGG 369
>gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 468
Score = 27.9 bits (62), Expect = 4.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 134 GAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
G TT +A +L A H GN I +L+V+ +
Sbjct: 125 GKSTTTALLAHLLRAAGHRTALVGN-----IGVPLLEVLAPQ 161
>gnl|CDD|226048 COG3517, COG3517, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 495
Score = 27.7 bits (62), Expect = 4.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 152 FNTFGGNPVGCVIA 165
+ FGG P+G +I
Sbjct: 151 YGQFGGEPIGAIIG 164
>gnl|CDD|188615 TIGR04100, rSAM_pair_X, radical SAM enzyme, TIGR04100 family.
Members of this protein family are radical SAM enzymes
that appear paired with members of TIGR04002, a family
of small (~170 residue), mostly hydrophobic protein.
This family of radical SAM enzymes belongs to a larger
family TIGR04038, in which some members show regularly
in contexts with TatD.
Length = 197
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 167 TVLDVIKDEELQYNCKQVSAQIIGYLRV 194
+V+DVI +E+++ K+++ + LRV
Sbjct: 167 SVVDVIPEEQIE-ASKKLAESLGIPLRV 193
>gnl|CDD|218820 pfam05943, DUF877, Protein of unknown function (DUF877). This
family consists of a number of uncharacterized bacterial
proteins. The function of this family is unknown.
Length = 423
Score = 27.2 bits (61), Expect = 6.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 150 AHFNTFGGNPVGCVIA 165
+ TFGG P G +I
Sbjct: 82 EEYGTFGGEPYGALIG 97
>gnl|CDD|180831 PRK07088, PRK07088, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 764
Score = 27.1 bits (60), Expect = 7.0
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 157 GNPVGCVIASTVLDVIKDEELQYNCKQVSAQI 188
G+ V C + S VL + DEEL+ + QI
Sbjct: 491 GDMVTCNLNSIVLGNVDDEELEEV---IPTQI 519
>gnl|CDD|214569 smart00222, Sec7, Sec7 domain. Domain named after the S.
cerevisiae SEC7 gene product, which is required for
proper protein transport through the Golgi. The domain
facilitates guanine nucleotide exchange on the small
GTPases, ARFs (ADP ribosylation factors).
Length = 189
Score = 26.5 bits (59), Expect = 7.2
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 62 ESIQGVSGVKEFPRYFLRRAYELIKSNN 89
++++G + ++ PR FL Y+ IK+N
Sbjct: 161 KNVRGSNDGEDLPREFLEELYDSIKNNE 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0740 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,929,483
Number of extensions: 906727
Number of successful extensions: 985
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 98
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)