RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13322
(195 letters)
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 186 bits (476), Expect = 6e-58
Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 22/193 (11%)
Query: 3 PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
P YR + N + + AA IAE
Sbjct: 170 PFTYRPRFER------------------NGAYDYLAELDYAFDLIDRQSS-GNLAAFIAE 210
Query: 63 SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
I G+ E P ++ ++ L I DE QTG GRTG + + GV+PDI+T
Sbjct: 211 PILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDGVTPDILT 269
Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIKDEELQYN 180
++K + G P+ A+VT+ I + + + T +P+ + VLDV++ + L
Sbjct: 270 LSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVAR 329
Query: 181 CKQVSAQIIGYLR 193
+ ++ L
Sbjct: 330 ANVMGDRLRRGLL 342
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 186 bits (475), Expect = 9e-58
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 24/191 (12%)
Query: 3 PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
PD YR + + L+ VP A E
Sbjct: 171 PDPYRPYRN----------------------DPTGDAILTLLTEKLAAVPAGSIGAAFIE 208
Query: 63 SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
IQ G+ P FLR+ ++ +++ L + DEV+ G R+G FE G PDI+
Sbjct: 209 PIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEGFVPDILV 267
Query: 123 MAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCK 182
+ KG+ G P+ AV+ EI + A T GNP+ VL+ I ++L +
Sbjct: 268 LGKGLGGGLPLSAVIAPAEILDCAS-AFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAE 326
Query: 183 QVSAQIIGYLR 193
+ + L
Sbjct: 327 RKGRLLRDGLS 337
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 172 bits (439), Expect = 3e-52
Identities = 50/170 (29%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 24 RYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYE 83
R ++ + + AA++ E IQG G FL +
Sbjct: 196 RDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255
Query: 84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIA 143
+ N+ +FI+DEVQTGF RTG + E G+ PD++ AKGIA G P+ AV EI
Sbjct: 256 WCRKNDVVFIADEVQTGFARTGA-MFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIM 314
Query: 144 QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
+ T+GGNP+ C A ++ I+ E L +Q+ + L
Sbjct: 315 DSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLG 364
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 172 bits (438), Expect = 3e-52
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 3/166 (1%)
Query: 28 CPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKS 87
+ ++ + + AA+I E IQG G FL
Sbjct: 200 DEPGLTGEE--AARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE 257
Query: 88 NNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLT 147
N +FI+DEVQTGF RTG ++ E G+ PDIVTMAKGIA G P+ AV E+ +
Sbjct: 258 NGVVFIADEVQTGFARTGA-WFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY 316
Query: 148 KAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
T+GGNPV C A L V+++ +L + + A + L
Sbjct: 317 AGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLS 362
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 171 bits (436), Expect = 4e-52
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 41 EQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG 100
+ F+ + AA++ E +QG G F++R L + + I+DEVQ+G
Sbjct: 185 ASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSG 244
Query: 101 FGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPV 160
GRTG + E GV+PD+ T AK IA GFP+ V E+ + T+ GNP+
Sbjct: 245 AGRTGT-LFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPI 303
Query: 161 GCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
CV A VL V + E L + ++ L
Sbjct: 304 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLL 336
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 161 bits (411), Expect = 9e-49
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E +QG GV+ FLR A E+ + L I DE+QTG GRTG + FE G+
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFGI 245
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AK + G P+G V E+A+ + K H TFGGNP+ + ++
Sbjct: 246 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 305
Query: 177 LQYNCKQVSAQIIGYLR 193
L ++ + LR
Sbjct: 306 LWERAAELGPWFMEKLR 322
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 159 bits (405), Expect = 1e-47
Identities = 51/137 (37%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A++ E IQG GV+ FL+ +L + L + DEVQ G GRTGD + + +GV
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYGV 261
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
+PDI+T AK + GFP+ A++TT EIA +H +T+GGNP+ C +A D+I E
Sbjct: 262 TPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPE 321
Query: 177 LQYNCKQVSAQIIGYLR 193
+ Q + +L+
Sbjct: 322 VLQGIHTKRQQFVQHLQ 338
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 158 bits (403), Expect = 4e-47
Identities = 50/177 (28%), Positives = 65/177 (36%), Gaps = 3/177 (1%)
Query: 19 PIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGA-AALIAESIQGVSGVKEFPRYF 77
P Y L++ + E L A A +AE IQG G + F F
Sbjct: 194 PRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEF 253
Query: 78 LRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVV 137
EL + L I DEVQTG G TG W ++ V+PDIV K M
Sbjct: 254 FAAMRELCDEFDALLIFDEVQTGCGLTG-TAWAYQQLDVAPDIVAFGKKTQVCGVMAGRR 312
Query: 138 TTTEIAQVLTKA-AHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
V +T+GGN V A +L+VI+ E L Q + L
Sbjct: 313 VDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLD 369
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 156 bits (397), Expect = 9e-47
Identities = 52/137 (37%), Positives = 81/137 (59%), Gaps = 3/137 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E IQG GV E FL + E+ K + L I DEVQTG GRTG+ ++ ++ +
Sbjct: 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFNL 232
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD++ +AKG+ G P+GA++ E+AQ T +H +TFGGNP+ C + V+D + E+
Sbjct: 233 KPDVIALAKGLGGGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEV--EK 290
Query: 177 LQYNCKQVSAQIIGYLR 193
L + ++V L+
Sbjct: 291 LLPHVREVGNYFKEKLK 307
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 155 bits (395), Expect = 2e-46
Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A+I ES+QG G+ + F + +L + L I+DE+Q G GR+G ++ +E +
Sbjct: 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQI 239
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIA-QVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDI+T AK + G +GA V ++A L H +T+GGNP+ C + V ++ K+E
Sbjct: 240 LPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEE 299
Query: 176 ELQYNCKQVSAQIIGYLR 193
++ N +++ + L
Sbjct: 300 KILENVNKLTPYLEQSLD 317
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 154 bits (393), Expect = 6e-46
Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 2/137 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A+ E IQG SG+ + FL A +L + L + DEVQ G GRTG + ++ +GV
Sbjct: 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYGV 243
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PD++T AKG+ G P+GAV+ E A VL H TFGGNP+ C TV+ + E
Sbjct: 244 VPDVLTTAKGLGGGVPIGAVI-VNERANVLEPGDHGTTFGGNPLACRAGVTVIKELTKEG 302
Query: 177 LQYNCKQVSAQIIGYLR 193
++ ++ L+
Sbjct: 303 FLEEVEEKGNYLMKKLQ 319
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 152 bits (386), Expect = 7e-45
Identities = 54/192 (28%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 3 PDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
P+ YR W P +F E + F VP A + E
Sbjct: 173 PNPYRNPWHIN-----------GYENPSELVNRVIEFIEDYI--FVNLVPPEEVAGIFFE 219
Query: 63 SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVT 122
IQG G P+ F +L K L + DEVQ G GRTG + E PD++T
Sbjct: 220 PIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFNTVPDVIT 278
Query: 123 MAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNC 181
+AK + G P+GA + ++ H NTFGGN + C I S V+D++ ++L +
Sbjct: 279 LAKALGGGIMPIGATIFRKDLD--FKPGMHSNTFGGNALACAIGSKVIDIV--KDLLPHV 334
Query: 182 KQVSAQIIGYLR 193
++ L+
Sbjct: 335 NEIGKIFAEELQ 346
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 151 bits (384), Expect = 2e-44
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A I E IQG +GV +L+ Y++ K N LF++DEVQTG GRTG + V
Sbjct: 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYNV 272
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PD++ + K ++ G +P+ AV+ +I V+ H +T+GGNP+ I L+V+ +E
Sbjct: 273 KPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINE 332
Query: 176 ELQYNCKQVSAQIIGYLR 193
+L N +++ + L+
Sbjct: 333 KLCENAEKLGGPFLENLK 350
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 150 bits (381), Expect = 2e-44
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E IQG +G+ P FL+ A E+ K N LF++DE+QTG GRTG + + V
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTG-KVFACDWDNV 242
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
+PD+ + K + G FP+ +I V +H +TFGGNP+ C ++ L+V+++E
Sbjct: 243 TPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEE 302
Query: 176 ELQYNCKQVSAQIIGYLR 193
+L Q+ +++G L+
Sbjct: 303 KLTERSLQLGEKLVGQLK 320
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 149 bits (378), Expect = 1e-43
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RTG + + V
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG-RWLAVDYENV 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + H +T+GGNP+GC +A L+V+++E
Sbjct: 284 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEE 343
Query: 176 ELQYNCKQVSAQIIGYLR 193
L N ++ + L
Sbjct: 344 NLAENADKLGIILRNELM 361
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 150 bits (380), Expect = 2e-43
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 14/177 (7%)
Query: 25 YCSCPLNQCEASNKFYEQLVNA------FQYNVPITGAAALIAESIQGVSGVKEFPRYFL 78
PL + N+ E +Y A +I E IQ G F
Sbjct: 222 RLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFF 281
Query: 79 RRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVS--PDIVTMAKGIANGFPMGAV 136
R+ ++ + + F+ DEVQTG G TG +W E G+ D++T +K + G
Sbjct: 282 RKLRDISRKHGCAFLVDEVQTGGGSTG-KFWAHEHWGLDDPADVMTFSKKMMTGGFFHK- 339
Query: 137 VTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEELQYNCKQVSAQIIGYLR 193
E + FNT+ G+P ++ + V+++IK E+L N ++ L
Sbjct: 340 ----EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLL 392
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 136 bits (344), Expect = 2e-38
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E I G+ P+ +++ +E + + L ISDEV GFGRTG +GF + V
Sbjct: 217 AAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG-KAFGFMNYDV 275
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA------HFNTFGGNPVGCVIASTVL 169
PDI+TMAKGI + P+ A EI + H NTFGGNP C +A L
Sbjct: 276 KPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNL 335
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
++I++E L Q+ + ++ L+
Sbjct: 336 EIIENENLIERSAQMGSLLLEQLK 359
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 132 bits (334), Expect = 6e-37
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 9/145 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A AE + G GV + + + +++ + ISDEV GFGRTG N WG +
Sbjct: 232 AGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVTYDF 290
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
+PD + +K + G FPMGAV+ E+++ L A H T G+PVGC IA
Sbjct: 291 TPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKA 350
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
+DV+ +E L N ++++ + L+
Sbjct: 351 IDVVMNEGLAENVRRLAPRFEERLK 375
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 131 bits (333), Expect = 9e-37
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA I E I G G+ P + + ++K + L ++DEV TGFGR G +G + +G+
Sbjct: 223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDHYGI 281
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIASTV 168
PD++T+AKG+ + P+ V+ + QVL + + H T+ +P+
Sbjct: 282 KPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVAN 341
Query: 169 LDVIKDEELQYNCKQVSAQIIGYLR 193
L++I + +L N + A L
Sbjct: 342 LELIDEMDLVTNAGETGAYFRAELA 366
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 128 bits (324), Expect = 1e-35
Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG GV P + + + + L ++DEV GFGRTG ++G + G
Sbjct: 221 AAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFGF 279
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFN---TFGGNPVGCVIASTVLDVI 172
PD+ T AKG+++G P+GAV +A+ L FN T+ G+PV +A + +
Sbjct: 280 QPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 173 KDEEL 177
+DE +
Sbjct: 340 RDEGI 344
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 127 bits (321), Expect = 5e-35
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 4/134 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE +QG GV P + + + L I+DEV GFGRTG N++G + G+
Sbjct: 225 AAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMGI 283
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA--HFNTFGGNPVGCVIASTVLDVIK 173
P I+T+AKG+++G P+G + E+A V+ K H T+ G+PV +A L +++
Sbjct: 284 RPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE 343
Query: 174 DEELQYNCKQVSAQ 187
+E + + + V+A
Sbjct: 344 EENILDHVRNVAAP 357
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 126 bits (320), Expect = 5e-35
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 11/147 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+ E + G +GV P +L+R E+ +N L + DEV TGFGRTG + +G + GV
Sbjct: 221 AAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFGV 279
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA---------HFNTFGGNPVGCVIAS 166
+PD++ +AK + NG PMGAV+ +TEI Q H T+ +PV C
Sbjct: 280 TPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGL 339
Query: 167 TVLDVIKDEELQYNCKQVSAQIIGYLR 193
L +++ E L + +V+ L
Sbjct: 340 AALCLLQKENLVQSVAEVAPHFEKALH 366
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 123 bits (312), Expect = 6e-34
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 57 AALIAE-SIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AAL E +QG SG+ P +L EL + + L I DEV TGFGRTG + E
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTG-KMFACEHEN 270
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIAST 167
V PD++ KGI G+ P+ T +I + H +++ GN +GC +A
Sbjct: 271 VQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALE 330
Query: 168 VLDVIKDEELQYNCKQVSAQIIGYLR 193
L + + E + + S ++ L+
Sbjct: 331 NLALFESENIVEQVAEKSKKLHFLLQ 356
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 123 bits (310), Expect = 2e-33
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MHG 115
AA +AE I GV P + R + + ++ L+ISDEV TGFGR G ++ E + G
Sbjct: 223 AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASEKVFG 281
Query: 116 VSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA-------HFNTFGGNPVGCVIAST 167
V PDI+T AKG+ +G P+G + + + ++ + T+ PV C A
Sbjct: 282 VVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALA 341
Query: 168 VLDVIKDEELQYNCKQVSAQIIGYLR 193
+++++ E + ++++ L
Sbjct: 342 NIELMEREGIVDQAREMADYFAAALA 367
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 119 bits (301), Expect = 2e-32
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 57 AALIAESIQGVS-GVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE-MH 114
AA +AE + G S + R ++ +FI+DEV +G GR G +
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCG-SPLALSRWS 250
Query: 115 GVSPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAA----HFNTFGGNPVGCVIASTVL 169
GV+PDI + KG+A G P+ ++ ++ + + + H T+ G+PV +VL
Sbjct: 251 GVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVL 310
Query: 170 DVIKDEELQYNCKQVSAQIIGYLR 193
D+++ E+L K+ AQ++ L+
Sbjct: 311 DIVEREDLTGAAKERGAQLLAGLQ 334
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 119 bits (300), Expect = 3e-32
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA+I E I QG G++ + +L+R ++ L I+DE+ TGFGRTG + E
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTG-KLFACEHAE 264
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL----TKA-AHFNTFGGNPVGCVIASTVL 169
++PDI+ + K + G + A +TT E+A+ + H TF GNP+ C A+ L
Sbjct: 265 IAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASL 324
Query: 170 DVIKDEELQYNCKQVSAQIIGYL 192
+++ + Q + Q+ L
Sbjct: 325 AILESGDWQQQVADIEVQLREQL 347
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 118 bits (299), Expect = 5e-32
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 8/143 (5%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
AA++ E + QG G++ +L ++ + L I DE+ TGFGRTG + + G
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTG-ALFAADHAG 293
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL----TKA-AHFNTFGGNPVGCVIASTVL 169
VSPDI+ + K + G+ + A + T ++A + A H TF NP+ C ++ +
Sbjct: 294 VSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASV 353
Query: 170 DVIKDEELQYNCKQVSAQIIGYL 192
+++ ++ + +++A + L
Sbjct: 354 ELLLGQDWRTRITELAAGLTAGL 376
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 116 bits (291), Expect = 2e-30
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 9/140 (6%)
Query: 57 AALIAESI-QGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
ALI E + G G+ F R ++ I DEV TGF R G E+ G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLG 654
Query: 116 VSPDIVTMAKGIANGF-PMGAVVTTTEIAQVL-----TKA-AHFNTFGGNPVGCVIASTV 168
PDI AK + G P+ + T + KA H +++ + +GC A+
Sbjct: 655 CKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKA 714
Query: 169 LDVIKDEELQYNCKQVSAQI 188
+ KD E +N +
Sbjct: 715 IQWFKDPETNHNITSQGKTL 734
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 64.2 bits (157), Expect = 1e-12
Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA IAE + GV FLR EL + LFI DEV +GF R G++ + V
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGM-QALLDV 260
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFN-----TFGGNPVGCVIASTVLDV 171
PD+ +AK A G P G + ++ VL++ + TF GNP+ A +D
Sbjct: 261 QPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDT 320
Query: 172 IKDEEL 177
I ++++
Sbjct: 321 ILEDDV 326
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 56.4 bits (137), Expect = 7e-10
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E + +GV R FL L + + L I DEV TGF R G +
Sbjct: 205 AGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLEGA-QGYFNI 262
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
DI+ + K I GFP+GAV + E+ +LT A TF +P+ L
Sbjct: 263 EGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNA--GTFNAHPITMAAGLATLKA 320
Query: 172 IKDEEL 177
+++E +
Sbjct: 321 LEEEPV 326
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 56.0 bits (136), Expect = 9e-10
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA++ E I G G+ E FL + EL+ L I DEV T F R ++ GV
Sbjct: 204 AAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGA-QDLLGV 261
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
+PD+ + K I G P+GA EI + + A T GNP L+V
Sbjct: 262 TPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQA--GTMAGNPASMASGIACLEV 319
Query: 172 IKDEEL 177
++ E L
Sbjct: 320 LQQEGL 325
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 56.0 bits (136), Expect = 9e-10
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E I G SG FL E+ ++ L + DEV TGF R E GV
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGGV-QEKFGV 258
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-----AHFNTFGGNPVGCVIASTVLDV 171
+PD+ T+ K I G P+GA EI Q++ A A T GNP+ L++
Sbjct: 259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQA--GTLSGNPLAMTAGIKTLEL 316
Query: 172 IKDEEL 177
++
Sbjct: 317 LRQPGT 322
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 56.0 bits (136), Expect = 9e-10
Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E + G GV FL E+ + N L I DEV TGF R N +GV
Sbjct: 202 ACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCG-QGYYGV 259
Query: 117 SPDIVTMAKGIANGFPMGA 135
+PD+ + K I G P+GA
Sbjct: 260 TPDLTCLGKVIGGGLPVGA 278
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 55.6 bits (135), Expect = 1e-09
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E + G FL L L I DEV TGF R + + V
Sbjct: 202 ACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAGA-QDYYHV 259
Query: 117 SPDIVTMAKGIANGFPMGA 135
PD+ + K I G P+GA
Sbjct: 260 IPDLTCLGKIIGGGMPVGA 278
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 53.8 bits (130), Expect = 5e-09
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTG-FGRTGDNYWGFEMHG 115
AA++ E + G G R FL L I DEV T G EM G
Sbjct: 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG----AQEMLG 290
Query: 116 VSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVLD 170
+S D+ T+ K I G GA ++ + A H TF N + L
Sbjct: 291 ISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALT 350
Query: 171 VIKDEEL 177
I +
Sbjct: 351 QIYTRQA 357
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 52.1 bits (126), Expect = 2e-08
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 57 AALIAESIQG----VSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFE 112
AA+I E + G + ++F + L A L I+DEV TGF R E
Sbjct: 201 AAIIFEPVVGNAGVLVPTEDFLK-ALHEAKA----YGVLLIADEVMTGF-RLAFGGA-TE 253
Query: 113 MHGVSPDIVTMAKGIANGFPMGA 135
+ G+ PD+VT+ K + G P A
Sbjct: 254 LLGLKPDLVTLGKILGGGLPAAA 276
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-06
Identities = 28/157 (17%), Positives = 41/157 (26%), Gaps = 50/157 (31%)
Query: 17 YSPIQTTRYCSCPLNQ----------CEASNKFYEQLVNAFQYNVPITG------AAALI 60
PI SCPL + +L + + TG A I
Sbjct: 233 SIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK---GATGHSQGLVTAVAI 283
Query: 61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLF-ISDEVQTGFGRTGDNYWGFEMHGVSPD 119
AE+ S F + I LF I + T + P
Sbjct: 284 AETDSWES--------FFVSVRKAITV---LFFIGVRCYEAYPNT----------SLPPS 322
Query: 120 IVTMAKGIANGFP--MGAVVTTTEIAQVLTKAAHFNT 154
I+ + G P M ++ QV N+
Sbjct: 323 ILEDSLENNEGVPSPM-LSISNLTQEQVQDYVNKTNS 358
Score = 35.0 bits (80), Expect = 0.012
Identities = 39/208 (18%), Positives = 70/208 (33%), Gaps = 54/208 (25%)
Query: 5 VYRGIWGGQRCR--YSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALIAE 62
++ G G+R R YS + ++ + K ++++ N T
Sbjct: 1674 IHFGGEKGKRIRENYSAMI----FETIVDGKLKTEKIFKEI------NEHSTS---YTFR 1720
Query: 63 SIQGVSGVKEF--PRYFLRR--AYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMH--G- 115
S +G+ +F P L A+E +KS GL +D G H G
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSK-GLIPADATFAG-------------HSLGE 1766
Query: 116 ----VSPDIVTMAKGIANGFPMGAVVTTTEI-AQVLTKAAHFNTFGGNPVGCVIA---ST 167
S +A+ + ++V + A + G + G +IA
Sbjct: 1767 YAALAS---------LADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG-MIAINPGR 1816
Query: 168 VLDVIKDEELQYNCKQVSAQIIGYLRVV 195
V E LQY ++V + + +V
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIV 1844
Score = 32.3 bits (73), Expect = 0.11
Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 77/197 (39%)
Query: 43 LVNAFQYNVPITG-AAALIA-----ESIQGVSGV--------KEFPRY---FL------- 78
LVN + V ++G +L + SG+ + ++ FL
Sbjct: 370 LVNGAKNLV-VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 79 ----RRAYELIK----SNNGLFISDEVQ-----TGFGRTGDNYWGFEMHGVSPDIVTMAK 125
A +LI NN F + ++Q T G + +S IV
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT---FDGSDLRVLS-GSISERIVDC-- 482
Query: 126 GIANGFPMGAVVTTTEI---AQVLTKAAHFNTFG----------------GNPVGCVIAS 166
+ + KA H FG G V ++A
Sbjct: 483 -----------IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 167 TVLDVIKDEELQYNCKQ 183
T LD+ D++ + KQ
Sbjct: 532 T-LDINPDDDYGF--KQ 545
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.004
Identities = 33/245 (13%), Positives = 71/245 (28%), Gaps = 81/245 (33%)
Query: 3 PDVYRGIWGGQRCRY-----SPIQTTRY---CSCPLNQCEASNKF--------YEQLVNA 46
D+ + I + + + T Q E KF Y+ L++
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL-SKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 47 FQ--YNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ------ 98
+ P I + + + + F +Y + R +K L E++
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVL 154
Query: 99 ----TGFGRT----------------GDN-YW---G--------FEM-----HGVSPDIV 121
G G+T +W EM + + P+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 122 TMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE----L 177
+ + +N + E+ ++L + N C++ VL +++ +
Sbjct: 215 SRSDHSSN-IKLRIHSIQAELRRLLKSKPYEN--------CLL---VLLNVQNAKAWNAF 262
Query: 178 QYNCK 182
+CK
Sbjct: 263 NLSCK 267
Score = 30.2 bits (67), Expect = 0.46
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Query: 38 KFYEQLVNAFQYNVPITGA------AALIAESIQGVSGVKEFPRYFL--RRAYELIKSNN 89
K +++L F + I +I + V V + +Y L ++ E S
Sbjct: 373 KMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQPKESTISIP 429
Query: 90 GLFISDEVQTGFGRTGDNYWGFEMH 114
+++ +V+ +N + +H
Sbjct: 430 SIYLELKVKL------ENE--YALH 446
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.55
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 12/37 (32%)
Query: 30 LNQCEASNKFYEQLVNAFQYNVPITGAAAL-IAESIQ 65
L + +AS K Y A AL I +++
Sbjct: 22 LKKLQASLKLYA----------D-DSAPALAIKATME 47
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 26.3 bits (57), Expect = 7.3
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 20/150 (13%)
Query: 56 AAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHG 115
A+++ +G + L+ YE+ K + + D + +
Sbjct: 184 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKN 243
Query: 116 VSP-----------DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA-------AHFNTFGG 157
+ D +TM+ +G +V + ++ T A F T+GG
Sbjct: 244 ATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGG 303
Query: 158 NPVGCVIASTV--LDVIKDEELQYNCKQVS 185
+ A + ++E L Y QV
Sbjct: 304 LAGRDMAAMVQGLEEGTEEEYLHYRIGQVK 333
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,097,362
Number of extensions: 181417
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 48
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)