RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13322
(195 letters)
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 121 bits (305), Expect = 1e-33
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Query: 39 FYEQLVNAFQYNVPITGAAALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQ 98
+ F+ + AA++ E +QG G F++R L + + I+DEVQ
Sbjct: 182 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ 241
Query: 99 TGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGN 158
+G GRT + E GV+PD+ T AK IA GFP+ V E+ + T+ GN
Sbjct: 242 SGAGRT-GTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGN 300
Query: 159 PVGCVIASTVLDVIKDEELQYNCKQ 183
P+ CV A VL V + E L
Sbjct: 301 PIACVAALEVLKVFEQENLLQKAND 325
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 121 bits (304), Expect = 1e-33
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA + E IQG +GV +L EL + LFI+DE+QTG RT + + V
Sbjct: 190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLART-GRWLAVDYENV 248
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
PDIV + K ++ G +P+ AV+ +I + HF+T+GGNP+GC +A L+V+++E
Sbjct: 249 RPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEEE 308
Query: 176 ELQYNCKQVSAQIIGYLR 193
L N ++ + L
Sbjct: 309 NLAENADKLGIILRNELM 326
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 112 bits (281), Expect = 2e-30
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A I E IQG +GV +L+ Y++ K N LF++DEVQTG GRT + V
Sbjct: 188 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT-GKLLCVHHYNV 246
Query: 117 SPDIVTMAKGIANG-FPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVI 164
PD++ + K ++ G +P+ AV+ +I V+ H +T+GGNP+ I
Sbjct: 247 KPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASI 295
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 106 bits (266), Expect = 3e-28
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
AA+I E +QG GV+ FLR A E+ + L I DE+QTG GRTG + FE G+
Sbjct: 179 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAFEHFGI 237
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDEE 176
PDI+T+AK + G P+G V E+A+ + K H TFGGNP+ + ++
Sbjct: 238 VPDILTLAKALGGGVPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTR 297
Query: 177 LQYNCKQVSAQIIGYLR 193
L ++ + LR
Sbjct: 298 LWERAAELGPWFMEKLR 314
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 84.1 bits (207), Expect = 7e-20
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
A +I E I G SG FL E+ ++ L + DEV TGF E GV
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI--AYGGVQEKFGV 258
Query: 117 SPDIVTMAKGIANGFPMGAVVTTTEIAQVLTKAA---HFNTFGGNPVGCVIASTVLDVIK 173
+PD+ T+ K I G P+GA EI Q++ A T GNP+ L++++
Sbjct: 259 TPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR 318
Query: 174 DEELQYNCKQ 183
Q
Sbjct: 319 QPGTYEYLDQ 328
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 60.9 bits (146), Expect = 8e-12
Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 4/187 (2%)
Query: 1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGA-AAL 59
R G I + A + E + +G AA
Sbjct: 146 ATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAF 205
Query: 60 IAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPD 119
IAE I G+ E P ++ ++ L I DE QTG GRT + + GV+PD
Sbjct: 206 IAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT-GTMFACQRDGVTPD 264
Query: 120 IVTMAKGIANGFPMGAVVTTTEIAQVLTKAAHF--NTFGGNPVGCVIASTVLDVIKDEEL 177
I+T++K + G P+ A+VT+ I + + + T +P+ + VLDV++ + L
Sbjct: 265 ILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGL 324
Query: 178 QYNCKQV 184
+
Sbjct: 325 VARANVM 331
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 57.7 bits (138), Expect = 9e-11
Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 9/198 (4%)
Query: 1 MHPDVYRGIWGGQRCRYSPIQTTRYCSCPLNQCEASNKFYEQLVNAFQYNVPITGAAALI 60
PD + E + +L+ A ++ + AA +I
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI----AAVII 210
Query: 61 AESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDI 120
+QG G++ + +L+R ++ L I+DE+ TGFGRTG + +
Sbjct: 211 EPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL 270
Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAA-----HFNTFGGNPVGCVIASTVLDVIKDE 175
+ A +TT E+A+ ++ H TF GNP+ C A+ L +++
Sbjct: 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG 330
Query: 176 ELQYNCKQVSAQIIGYLR 193
+ Q + Q+ L
Sbjct: 331 DWQQQVADIEVQLREQLA 348
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 43.4 bits (101), Expect = 7e-06
Identities = 17/154 (11%), Positives = 41/154 (26%), Gaps = 17/154 (11%)
Query: 57 AALIAESIQGVSGVKEFPRYFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGV 116
++A +G + L+ Y + K + + D + E
Sbjct: 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW 244
Query: 117 SP-----------DIVTMAKGIANGFPMGAVVTTTEIAQVLTKA---AHFNTFGGNPVGC 162
+ D++ M+ PMG ++ + + G P
Sbjct: 245 TIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304
Query: 163 VIASTVLD---VIKDEELQYNCKQVSAQIIGYLR 193
+ ++ V + + + + YL
Sbjct: 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLV 338
>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 452
Score = 25.9 bits (56), Expect = 3.5
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 79 RRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFP 132
Y N L++ GF + D ++ V+ + FP
Sbjct: 84 YNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTEVAQSNFEALQDFFRLFP 137
>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
{Thermotoga maritima [TaxId: 2336]}
Length = 145
Score = 25.3 bits (55), Expect = 4.3
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 84 LIKSNNGLFISDEVQTGFGRTGDNYWGFEM-HGVSPDIVTMAKGI--ANGFPMGAVVTTT 140
L + + G + Y G + PD+ +A+ AN + +
Sbjct: 56 LSNEADFGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGA 115
Query: 141 EIAQVLTKAAHFNTFGG 157
E+A + F G
Sbjct: 116 ELAFWIVDTFLSTPFDG 132
>d1cbya_ d.103.1.1 (A:) Mosquitocidal delta-endotoxin CytB {Bacillus
thuringiensis, strain Kyushuensis [TaxId: 1428]}
Length = 227
Score = 25.2 bits (55), Expect = 5.6
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 121 VTMAKGIANGFPMGAVVTTTEIAQVLTKAAHFNTFGGNPVGCVIASTVLDVIKDE 175
A IANG P A+V T Q + + + ++ + +I++
Sbjct: 59 FEKALQIANGIPNSAIVKTLN--QSVIQ-------QTVEISVMV-EQLKKIIQEV 103
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 421
Score = 25.5 bits (55), Expect = 5.6
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 76 YFLRRAYELIKSNNGLFISDEVQTGFGRTGDNYWGFEMHGVSPDIVTMAKGIANGFP 132
+ Y + +F+ V GF +G + D+ + + FP
Sbjct: 76 KPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGV-SNTVAAGKDVYNFLELFFDQFP 131
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 24.5 bits (53), Expect = 5.7
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 155 FGGNPVGCVIASTVLDVIKDEELQ 178
F GN G V + L + ++Q
Sbjct: 14 FRGNSAGVVFPADNLS---EAQMQ 34
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 349
Score = 25.3 bits (54), Expect = 6.2
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 109 WGF---EMHGVSPDIVTMAKGIANGF 131
WG HG+ D++ K F
Sbjct: 76 WGVMHLINHGIPADLMERVKKAGEEF 101
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD
{Thermotoga maritima [TaxId: 2336]}
Length = 147
Score = 24.5 bits (52), Expect = 6.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 141 EIAQVLTKAAHFNTFGGNPVGCVI 164
+ A L K PVG V+
Sbjct: 7 KRAIELAKKGLGRVNPNPPVGAVV 30
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase
{Alicyclobacillus acidocaldarius [TaxId: 405212]}
Length = 271
Score = 24.6 bits (53), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 104 TGDNYWGFEMHGVSPDIVTMAKGIA 128
T + Y + G+S D M K +
Sbjct: 55 TIEAYVALKYIGMSRDEEPMQKALR 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.424
Gapped
Lambda K H
0.267 0.0452 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 753,474
Number of extensions: 33453
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 17
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.7 bits)