BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13326
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
R F +A S +G PV+G V G G+LAY ++ +
Sbjct: 241 RSFTLASSKTDVGAPVSGPGVPGRFTKEKGILAYYEICDF 280
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
R F +A S +G PV+G + G G+LAY ++ +
Sbjct: 241 RSFTLASSKTDVGAPVSGPGIPGRFTKEKGILAYYEICDF 280
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
R F +A S +G P++G + G G LAY ++ +
Sbjct: 242 RSFTLASSETGVGAPISGPGIPGRFTKEAGTLAYYEICDF 281
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 68 GNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQ 107
G PVT T++FGM++ L +N+++T ++ + AQ
Sbjct: 286 GQPVTFTDIFGMLIG--ETLIHNRMNTTLSSLKEKVNTAQ 323
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
R F +A S +G P++G + G G+LAY ++ +
Sbjct: 241 RSFTLASSKTDVGAPISGPGIPGRFTKEKGILAYYEICDF 280
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 58 FVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
F +A S +G PV+G + G G+LAY ++ +
Sbjct: 243 FTLASSKTDVGAPVSGPGIPGQFTKEKGILAYYEICDF 280
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95
R + +A S +G P++G + G G+LAY ++ +
Sbjct: 241 RSYTLASSSTRVGAPISGPGIPGQFTKEKGILAYYEICDF 280
>pdb|2JBX|A Chain A, Crystal Structure Of The Myxoma Virus Anti-Apoptotic
Protein M11l
pdb|2JBX|B Chain B, Crystal Structure Of The Myxoma Virus Anti-Apoptotic
Protein M11l
Length = 145
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 32 QNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA 66
++IL+++++++ +LT+A+ AS + + ++LLA
Sbjct: 67 RDILSYNIVNIKNTLTFALRDASPSVKLATLTLLA 101
>pdb|2O42|A Chain A, Crystal Structure Of M11l, Bcl-2 Homolog From Myxoma
Virus
pdb|2O42|B Chain B, Crystal Structure Of M11l, Bcl-2 Homolog From Myxoma
Virus
Length = 144
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 32 QNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA 66
++IL+++++++ +LT+A+ AS + + ++LLA
Sbjct: 56 RDILSYNIVNIKNTLTFALRDASPSVKLATLTLLA 90
>pdb|2JBY|A Chain A, A Viral Protein Unexpectedly Mimics The Structure And
Function Of Pro-Survival Bcl-2
Length = 145
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 26/35 (74%)
Query: 32 QNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA 66
++IL+++++++ +LT+A+ AS + + ++LLA
Sbjct: 67 RDILSYNIVNIKNTLTFALRDASPSVKLATLTLLA 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,897
Number of Sequences: 62578
Number of extensions: 104393
Number of successful extensions: 276
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 13
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)