Query psy13326
Match_columns 143
No_of_seqs 116 out of 1026
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 16:38:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1441|consensus 99.8 4.9E-19 1.1E-23 149.1 4.9 86 13-99 230-315 (316)
2 PF03151 TPT: Triose-phosphate 99.7 1.2E-17 2.6E-22 123.2 7.1 77 15-91 77-153 (153)
3 PTZ00343 triose or hexose phos 99.4 2.4E-13 5.1E-18 114.9 8.3 77 17-93 274-350 (350)
4 PF08449 UAA: UAA transporter 99.3 7.7E-12 1.7E-16 103.1 8.3 83 15-97 221-303 (303)
5 KOG1442|consensus 99.3 3.1E-13 6.7E-18 112.7 -2.0 98 11-109 247-344 (347)
6 KOG1444|consensus 99.3 8.1E-12 1.8E-16 105.1 6.4 85 15-100 224-309 (314)
7 TIGR00817 tpt Tpt phosphate/ph 99.2 3E-11 6.5E-16 98.9 6.9 71 27-97 229-299 (302)
8 KOG1580|consensus 99.0 7E-10 1.5E-14 91.5 5.8 94 13-106 235-328 (337)
9 KOG1581|consensus 98.9 1.2E-09 2.5E-14 92.1 4.8 87 13-99 235-321 (327)
10 KOG1583|consensus 98.9 1.2E-09 2.6E-14 91.3 4.8 82 16-97 239-320 (330)
11 COG5070 VRG4 Nucleotide-sugar 98.9 1.5E-09 3.3E-14 88.9 4.3 86 12-97 217-302 (309)
12 KOG1443|consensus 98.8 5.2E-09 1.1E-13 88.4 6.1 75 15-89 239-313 (349)
13 TIGR00803 nst UDP-galactose tr 98.4 1.7E-07 3.8E-12 73.8 2.1 74 12-89 149-222 (222)
14 PF06027 DUF914: Eukaryotic pr 98.1 1.1E-05 2.4E-10 68.8 6.7 89 11-99 225-313 (334)
15 PF04142 Nuc_sug_transp: Nucle 98.0 2.1E-05 4.7E-10 64.0 7.3 82 16-97 14-95 (244)
16 PRK11689 aromatic amino acid e 97.9 8.5E-05 1.8E-09 61.0 8.4 79 13-91 209-287 (295)
17 PLN00411 nodulin MtN21 family 97.8 0.0001 2.3E-09 63.0 9.0 64 34-97 271-334 (358)
18 PRK10532 threonine and homoser 97.8 0.00012 2.5E-09 60.1 8.7 66 30-95 220-285 (293)
19 PF00892 EamA: EamA-like trans 97.7 8.7E-05 1.9E-09 51.5 5.9 78 13-90 47-125 (126)
20 TIGR00817 tpt Tpt phosphate/ph 97.4 0.00088 1.9E-08 54.8 8.4 77 13-89 59-135 (302)
21 PRK15430 putative chlorampheni 97.4 0.00084 1.8E-08 55.1 8.2 77 20-96 214-290 (296)
22 KOG1582|consensus 97.4 0.00065 1.4E-08 57.5 7.2 82 12-93 253-334 (367)
23 TIGR00950 2A78 Carboxylate/Ami 97.3 0.0011 2.3E-08 52.4 7.9 73 15-87 187-260 (260)
24 PRK11453 O-acetylserine/cystei 97.3 0.0014 3E-08 53.8 8.5 81 13-93 208-289 (299)
25 PF13536 EmrE: Multidrug resis 97.2 0.0019 4.1E-08 46.0 7.5 74 19-93 34-108 (113)
26 TIGR00688 rarD rarD protein. T 97.2 0.0014 3.1E-08 52.2 7.5 71 18-88 69-139 (256)
27 TIGR00950 2A78 Carboxylate/Ami 97.2 0.0014 3.1E-08 51.7 7.4 72 19-90 47-118 (260)
28 PRK15430 putative chlorampheni 97.2 0.0018 4E-08 53.1 8.1 73 17-89 71-143 (296)
29 PRK15051 4-amino-4-deoxy-L-ara 97.2 0.002 4.2E-08 46.6 7.2 42 46-88 65-106 (111)
30 PLN00411 nodulin MtN21 family 97.2 0.0015 3.3E-08 55.9 7.7 75 16-90 75-155 (358)
31 COG2510 Predicted membrane pro 97.2 0.00036 7.9E-09 52.8 3.3 86 4-89 52-137 (140)
32 PRK11272 putative DMT superfam 97.1 0.0034 7.5E-08 51.3 8.9 77 16-92 209-286 (292)
33 TIGR03340 phn_DUF6 phosphonate 97.1 0.0023 5E-08 52.0 7.4 74 17-90 61-134 (281)
34 PTZ00343 triose or hexose phos 97.1 0.0032 6.9E-08 53.4 8.2 75 16-90 111-185 (350)
35 TIGR03340 phn_DUF6 phosphonate 96.8 0.0026 5.6E-08 51.7 5.6 71 18-88 210-280 (281)
36 COG0697 RhaT Permeases of the 96.7 0.012 2.6E-07 46.2 8.6 79 14-92 209-288 (292)
37 PF08449 UAA: UAA transporter 96.7 0.0054 1.2E-07 50.6 6.8 80 19-98 64-143 (303)
38 PRK02971 4-amino-4-deoxy-L-ara 96.6 0.012 2.5E-07 43.9 7.4 68 23-91 51-122 (129)
39 PRK09541 emrE multidrug efflux 96.6 0.014 3E-07 42.5 7.6 48 45-92 57-104 (110)
40 PRK10452 multidrug efflux syst 96.6 0.012 2.5E-07 43.6 7.0 48 45-92 57-104 (120)
41 PRK10650 multidrug efflux syst 96.5 0.017 3.6E-07 42.1 7.3 45 45-89 62-106 (109)
42 PRK11431 multidrug efflux syst 96.5 0.02 4.3E-07 41.4 7.5 46 45-90 56-101 (105)
43 KOG2234|consensus 96.3 0.013 2.9E-07 50.4 6.7 73 18-90 91-163 (345)
44 PF06027 DUF914: Eukaryotic pr 96.3 0.0096 2.1E-07 50.9 5.8 74 19-93 80-153 (334)
45 COG2076 EmrE Membrane transpor 96.2 0.024 5.1E-07 41.3 6.8 48 45-92 57-104 (106)
46 TIGR00776 RhaT RhaT L-rhamnose 95.9 0.042 9.2E-07 45.3 7.8 76 16-91 208-288 (290)
47 PRK11689 aromatic amino acid e 95.7 0.04 8.6E-07 45.2 6.9 69 22-90 64-136 (295)
48 COG0697 RhaT Permeases of the 95.5 0.073 1.6E-06 41.7 7.3 77 19-95 70-147 (292)
49 KOG2234|consensus 95.4 0.056 1.2E-06 46.7 6.9 86 7-96 242-327 (345)
50 PRK11272 putative DMT superfam 95.1 0.14 3E-06 41.9 8.1 73 17-90 66-140 (292)
51 KOG3912|consensus 94.8 0.02 4.3E-07 48.9 2.4 63 30-92 273-335 (372)
52 PF00893 Multi_Drug_Res: Small 94.8 0.085 1.9E-06 36.7 5.2 38 45-82 56-93 (93)
53 PRK11453 O-acetylserine/cystei 94.2 0.22 4.8E-06 40.8 7.3 55 36-90 76-131 (299)
54 TIGR00776 RhaT RhaT L-rhamnose 92.7 0.3 6.5E-06 40.3 5.6 78 16-93 56-138 (290)
55 COG2962 RarD Predicted permeas 92.6 0.61 1.3E-05 39.5 7.4 84 14-98 206-290 (293)
56 PF04142 Nuc_sug_transp: Nucle 92.2 0.31 6.7E-06 39.7 5.1 69 9-81 175-243 (244)
57 KOG2765|consensus 92.1 0.2 4.2E-06 44.1 4.1 81 17-97 157-237 (416)
58 PF04657 DUF606: Protein of un 89.2 1 2.2E-05 33.7 5.1 72 17-88 62-138 (138)
59 COG2962 RarD Predicted permeas 89.1 1.1 2.4E-05 38.0 5.7 73 16-89 69-142 (293)
60 PF06800 Sugar_transport: Suga 87.5 2.8 6.2E-05 35.0 7.2 89 10-98 36-129 (269)
61 PF07857 DUF1632: CEO family ( 87.4 0.62 1.4E-05 38.6 3.3 30 71-100 114-143 (254)
62 KOG4510|consensus 86.2 0.12 2.7E-06 43.8 -1.5 69 22-90 100-168 (346)
63 KOG3912|consensus 84.9 1.9 4.1E-05 37.1 4.9 64 17-88 92-155 (372)
64 COG5006 rhtA Threonine/homoser 83.1 4.4 9.6E-05 34.2 6.3 56 36-91 227-282 (292)
65 PF10639 UPF0546: Uncharacteri 83.0 0.65 1.4E-05 34.1 1.2 61 28-88 46-111 (113)
66 KOG2766|consensus 82.9 1.6 3.5E-05 37.1 3.7 81 12-95 223-303 (336)
67 PF05653 Mg_trans_NIPA: Magnes 81.6 3.7 8.1E-05 34.4 5.5 56 35-90 66-121 (300)
68 KOG4812|consensus 79.7 4.5 9.8E-05 33.7 5.2 81 19-99 160-252 (262)
69 KOG1581|consensus 78.7 4 8.7E-05 35.1 4.7 78 19-96 83-160 (327)
70 KOG2765|consensus 72.4 3.1 6.8E-05 36.7 2.5 81 15-95 314-394 (416)
71 COG3238 Uncharacterized protei 70.6 13 0.00028 28.6 5.3 73 17-89 67-144 (150)
72 PRK13499 rhamnose-proton sympo 67.4 26 0.00056 30.3 7.1 79 14-92 68-154 (345)
73 PF05545 FixQ: Cbb3-type cytoc 65.6 5.9 0.00013 24.3 2.1 30 79-109 18-47 (49)
74 KOG1580|consensus 64.7 7.5 0.00016 32.8 3.2 46 47-92 113-158 (337)
75 PRK10532 threonine and homoser 61.7 68 0.0015 26.0 8.4 76 17-92 69-163 (293)
76 KOG4314|consensus 61.3 5 0.00011 33.1 1.5 65 33-97 67-131 (290)
77 cd01324 cbb3_Oxidase_CcoQ Cyto 58.9 10 0.00022 23.6 2.3 24 79-102 19-42 (48)
78 KOG2922|consensus 58.2 7.4 0.00016 33.6 2.1 40 50-89 95-134 (335)
79 PF06800 Sugar_transport: Suga 57.6 33 0.00072 28.7 5.8 69 19-87 195-267 (269)
80 PF05961 Chordopox_A13L: Chord 55.7 10 0.00022 25.6 2.0 21 76-96 7-27 (68)
81 PF07444 Ycf66_N: Ycf66 protei 48.2 13 0.00029 25.9 1.8 28 70-97 4-31 (84)
82 PHA03049 IMV membrane protein; 46.6 18 0.00039 24.3 2.1 21 76-96 7-27 (68)
83 KOG1442|consensus 46.5 3.8 8.3E-05 35.1 -1.4 81 8-88 91-171 (347)
84 COG0342 SecD Preprotein transl 42.3 66 0.0014 29.3 5.7 73 16-90 339-411 (506)
85 COG0382 UbiA 4-hydroxybenzoate 41.9 1.6E+02 0.0034 24.1 7.5 66 37-102 132-197 (289)
86 PF04971 Lysis_S: Lysis protei 41.6 22 0.00048 24.0 1.9 32 69-100 26-63 (68)
87 COG4736 CcoQ Cbb3-type cytochr 41.1 27 0.00058 23.0 2.2 33 78-110 17-50 (60)
88 KOG2766|consensus 38.5 5.7 0.00012 33.8 -1.5 53 38-90 97-149 (336)
89 PRK11387 S-methylmethionine tr 37.7 83 0.0018 27.3 5.5 24 75-98 438-461 (471)
90 COG3169 Uncharacterized protei 35.1 1.7E+02 0.0036 21.5 5.8 62 27-88 42-112 (116)
91 PF05653 Mg_trans_NIPA: Magnes 34.9 1E+02 0.0022 25.8 5.4 73 18-94 212-295 (300)
92 PF10855 DUF2648: Protein of u 34.1 17 0.00036 21.2 0.4 20 78-97 5-24 (33)
93 PF04342 DUF486: Protein of un 30.3 29 0.00063 25.4 1.2 28 60-87 77-104 (108)
94 PF14927 Neurensin: Neurensin 29.1 1.6E+02 0.0034 22.4 5.1 74 14-88 39-112 (140)
95 KOG4510|consensus 28.6 47 0.001 28.6 2.3 71 24-96 258-330 (346)
96 PF06966 DUF1295: Protein of u 24.0 2.2E+02 0.0048 22.8 5.4 30 70-99 116-145 (235)
97 PRK02237 hypothetical protein; 23.9 1.2E+02 0.0026 22.2 3.5 43 46-88 60-102 (109)
98 COG3296 Uncharacterized protei 23.9 73 0.0016 24.3 2.4 32 56-87 76-107 (143)
99 PF08693 SKG6: Transmembrane a 23.7 55 0.0012 19.8 1.4 19 77-95 21-39 (40)
100 COG4244 Predicted membrane pro 23.4 3.4E+02 0.0073 21.1 6.1 82 11-92 47-136 (160)
101 PF15061 DUF4538: Domain of un 23.1 63 0.0014 21.1 1.7 19 74-92 8-26 (58)
102 KOG4831|consensus 22.1 1.2E+02 0.0026 22.5 3.2 52 37-88 70-122 (125)
103 PRK10655 potE putrescine trans 21.9 3.5E+02 0.0076 23.0 6.5 23 75-97 410-432 (438)
104 TIGR00739 yajC preprotein tran 21.7 43 0.00093 23.0 0.8 21 80-100 9-29 (84)
105 PF02694 UPF0060: Uncharacteri 20.9 1.5E+02 0.0032 21.7 3.5 42 47-88 59-100 (107)
106 KOG1441|consensus 20.7 56 0.0012 27.9 1.4 74 17-90 81-176 (316)
107 PF02439 Adeno_E3_CR2: Adenovi 20.4 96 0.0021 18.6 2.0 23 76-98 13-35 (38)
No 1
>KOG1441|consensus
Probab=99.76 E-value=4.9e-19 Score=149.08 Aligned_cols=86 Identities=38% Similarity=0.519 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
+++...+.+++.+ +++|++|+++|++|++||||||+|+|++|++++++.|+++|++|+|+.|.+|++++++|+++|+++
T Consensus 230 ~~~~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 230 PWFVTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 5555666566666 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccch
Q psy13326 93 STYTGCA 99 (143)
Q Consensus 93 k~~~~~~ 99 (143)
|.+++++
T Consensus 309 k~~~~~~ 315 (316)
T KOG1441|consen 309 KLKEKKG 315 (316)
T ss_pred hhhhhcc
Confidence 9988754
No 2
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.72 E-value=1.2e-17 Score=123.22 Aligned_cols=77 Identities=40% Similarity=0.745 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
++..+..++++|++++++|+++|++++++||+|++|+|++|+++++++|+++|+|++|+.+++|++++++|+++|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 77 DPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.45 E-value=2.4e-13 Score=114.87 Aligned_cols=77 Identities=32% Similarity=0.486 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k 93 (143)
.++..++.+|++++++|.++|.+++++||+|++|++++|+++++++|+++|||++|+.+++|++++++|+++|++.|
T Consensus 274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 45557888999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.30 E-value=7.7e-12 Score=103.13 Aligned_cols=83 Identities=18% Similarity=0.404 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccc
Q psy13326 15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVST 94 (143)
Q Consensus 15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~ 94 (143)
.+..+..+++.++++++.+...|.+++++||+|.++++++|+++++++|+++|++++++.+|+|++++++|+.+|++.|+
T Consensus 221 ~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~ 300 (303)
T PF08449_consen 221 HPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKK 300 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy13326 95 YTG 97 (143)
Q Consensus 95 ~~~ 97 (143)
+++
T Consensus 301 k~~ 303 (303)
T PF08449_consen 301 KKN 303 (303)
T ss_pred cCC
Confidence 874
No 5
>KOG1442|consensus
Probab=99.27 E-value=3.1e-13 Score=112.72 Aligned_cols=98 Identities=13% Similarity=0.163 Sum_probs=88.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 11 SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 11 ~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
+..++.++|.++.++|+++|.+|+..++-|+.||||||+|.|+.|.+.+.++++.+++|..+.+.|.|-.+++.|...|+
T Consensus 247 ~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT 326 (347)
T KOG1442|consen 247 PHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYT 326 (347)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhhhccccccc
Q psy13326 91 KVSTYTGCARKTLTMAQGR 109 (143)
Q Consensus 91 ~~k~~~~~~~~k~~~~p~~ 109 (143)
++|..|++.+.+ +.+|++
T Consensus 327 ~vk~~em~~~~~-~~s~~~ 344 (347)
T KOG1442|consen 327 LVKEHEMRKASA-QRSPAT 344 (347)
T ss_pred HHHHHHHHhhcc-CCCccc
Confidence 999998865433 335655
No 6
>KOG1444|consensus
Probab=99.26 E-value=8.1e-12 Score=105.14 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhcc-CCcccccchhhHHHHHHHHHHHhhcc
Q psy13326 15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLAL-GNPVTGTNVFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~if-g~~ls~~~~iG~~lal~G~~lYs~~k 93 (143)
++.++..+++||+++|..|++.++|+..+||+|++++| +|..+...++.+++ +.|+++.+++|+.+.+.|..+|++.+
T Consensus 224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 36778999999999999999999999999999999999 77776666666665 56899999999999999999999999
Q ss_pred ccccchh
Q psy13326 94 TYTGCAR 100 (143)
Q Consensus 94 ~~~~~~~ 100 (143)
.++|+.+
T Consensus 303 ~~~k~~~ 309 (314)
T KOG1444|consen 303 FRKKKQP 309 (314)
T ss_pred hhhccCC
Confidence 8887654
No 7
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.21 E-value=3e-11 Score=98.89 Aligned_cols=71 Identities=32% Similarity=0.507 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccccc
Q psy13326 27 MLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 27 ~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~ 97 (143)
.+.++.|...|.+++++||+|.++.+.+|.++.+++|++++||++++.+++|.+++++|+++|+..|.+++
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 36777888999999999999999999999999999999999999999999999999999999998776544
No 8
>KOG1580|consensus
Probab=98.99 E-value=7e-10 Score=91.53 Aligned_cols=94 Identities=20% Similarity=0.311 Sum_probs=82.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
+.-+..++.+.+-++++.+-+.+.|..+...+|||.||+.+.|+.++|++|+++|+||++..||+|..+++.|.......
T Consensus 235 ~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 235 QRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 34466778888889999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccccchhhhcccc
Q psy13326 93 STYTGCARKTLTMA 106 (143)
Q Consensus 93 k~~~~~~~~k~~~~ 106 (143)
.++.+.+..|.|..
T Consensus 315 GK~a~~t~akkp~~ 328 (337)
T KOG1580|consen 315 GKKAPMTAAKKPLA 328 (337)
T ss_pred CCcCccccccCCCc
Confidence 77666555555543
No 9
>KOG1581|consensus
Probab=98.92 E-value=1.2e-09 Score=92.07 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=79.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
...++++..+++-++|+-.-+++.|..|++.+|||+.++.+.|++++|++|+++|++|++..||+|+.+++.|..+-.+.
T Consensus 235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 235 KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 34578888888888888888889999999999999999999999999999999999999999999999999999998888
Q ss_pred cccccch
Q psy13326 93 STYTGCA 99 (143)
Q Consensus 93 k~~~~~~ 99 (143)
|.+++..
T Consensus 315 k~~~~~~ 321 (327)
T KOG1581|consen 315 KKKKNQP 321 (327)
T ss_pred HHhccCc
Confidence 8774433
No 10
>KOG1583|consensus
Probab=98.92 E-value=1.2e-09 Score=91.33 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~ 95 (143)
|..|++++.+++.++++--..|.+..++++||.+++-++|+.+++++|++.|+||+++..|+|.++++.|.++|+-...+
T Consensus 239 P~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 239 PSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred cc
Q psy13326 96 TG 97 (143)
Q Consensus 96 ~~ 97 (143)
.|
T Consensus 319 ~~ 320 (330)
T KOG1583|consen 319 PK 320 (330)
T ss_pred cc
Confidence 66
No 11
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.89 E-value=1.5e-09 Score=88.87 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=80.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
...++..+.+++++|+++++..+++-||+..||+.||+++|++.+.+..+.|.++|++|++.+.++.+.+.++..+.|++
T Consensus 217 nnl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 217 NNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred cCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 44556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy13326 92 VSTYTG 97 (143)
Q Consensus 92 ~k~~~~ 97 (143)
+|.+++
T Consensus 297 aks~k~ 302 (309)
T COG5070 297 AKSKKQ 302 (309)
T ss_pred HHHHHH
Confidence 987754
No 12
>KOG1443|consensus
Probab=98.84 E-value=5.2e-09 Score=88.43 Aligned_cols=75 Identities=25% Similarity=0.465 Sum_probs=72.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
..+....+.+.|.++|++-.++|.++.+||.+|.+++|..|+++++++++.+.++.++..||+|..+++.|+.+|
T Consensus 239 ~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 239 ILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999999
No 13
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.36 E-value=1.7e-07 Score=73.75 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=61.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
.+++...+..++.+++ ..++..++++..++++.+++.++++++++++|+++||+++++.+++|..+++.|+++|
T Consensus 149 ~~~~~~~~~~~~~~a~----~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 149 IGYPTAVWIVGLLNVG----GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCCchHHHHHHHHHHh----cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 3444555544444333 3345889999999999999999999999999999999999999999999999999887
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.05 E-value=1.1e-05 Score=68.82 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=75.8
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 11 SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 11 ~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
.++|+.....+++.-+++-|+.....-.++..+||+..++.--.-....+++++++|++++++.-++|.+++++|.+.|+
T Consensus 225 ~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 225 SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 35677777777777777777777777789999999999998777788899999999999999999999999999999999
Q ss_pred hccccccch
Q psy13326 91 KVSTYTGCA 99 (143)
Q Consensus 91 ~~k~~~~~~ 99 (143)
....++.++
T Consensus 305 ~~~~~~~~~ 313 (334)
T PF06027_consen 305 LAESPEEEA 313 (334)
T ss_pred ccCCccccc
Confidence 887765544
No 15
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.00 E-value=2.1e-05 Score=63.99 Aligned_cols=82 Identities=26% Similarity=0.346 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~ 95 (143)
++-.+.+++.+++..++|...|..+....|.|++|...+|-+.+-++++++++.+++..||+++.+.++|+.+.......
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999997776665
Q ss_pred cc
Q psy13326 96 TG 97 (143)
Q Consensus 96 ~~ 97 (143)
..
T Consensus 94 ~~ 95 (244)
T PF04142_consen 94 SS 95 (244)
T ss_pred cc
Confidence 53
No 16
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.86 E-value=8.5e-05 Score=60.99 Aligned_cols=79 Identities=18% Similarity=0.015 Sum_probs=66.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
+.+...+..++..|+...+-.+.-+..+++.+|...++...+.-++.++++++++||++++.+++|.+++++|+++-..
T Consensus 209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3444555556666666666667778999999999999999999999999999999999999999999999999877644
No 17
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.84 E-value=0.0001 Score=63.05 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=57.7
Q ss_pred HHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccccc
Q psy13326 34 ILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 34 ~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~ 97 (143)
..-++++++.+|...++...+--++.+++|++++||++++.+++|.+++++|+++-++.+.+|.
T Consensus 271 ~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 271 VIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456799999999999999999999999999999999999999999999999999876655543
No 18
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.82 E-value=0.00012 Score=60.15 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326 30 WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95 (143)
Q Consensus 30 f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~ 95 (143)
.+....-+..+++.+|...++...+--++.+++|++++||++++.+++|.+++++|.+.+.....+
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 334445578899999999999999999999999999999999999999999999999999866544
No 19
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.75 E-value=8.7e-05 Score=51.46 Aligned_cols=78 Identities=21% Similarity=0.348 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHHHHH-HHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 13 DSSTKVIFLLCLDGML-SWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~-af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
..+.+.+..++..|++ ..+.+...+..++++++-..++...+--++..++++++++|++++.+++|+.++++|+++-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 47 NLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred CCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3444555555555655 57778888999999999999999999999999999999999999999999999999998754
No 20
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.41 E-value=0.00088 Score=54.81 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=69.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
..+.+-+..++..|++..+.+...+..++.+|+-..+++..+--+++.+++.++++|+++..+++|+.++++|+++-
T Consensus 59 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 59 KISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 34466777888888888888899999999999999999999999999999999999999999999999999999764
No 21
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.41 E-value=0.00084 Score=55.13 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326 20 FLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 20 ~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~ 96 (143)
.+++..|+....-...-+..+++.+|-+.++...+.-++.+++|++++||++++.+++|++++++|+.+........
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~ 290 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYT 290 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444454455556678889999999999999999999999999999999999999999999988888776554443
No 22
>KOG1582|consensus
Probab=97.38 E-value=0.00065 Score=57.51 Aligned_cols=82 Identities=16% Similarity=0.288 Sum_probs=73.2
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
.+.+.+...+.++-++.+|+-..+...+|+..+|++-..+.+.|+.++|++|+++|..|+|.+-.-|-.+++.|+++--+
T Consensus 253 aehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 253 AEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMY 332 (367)
T ss_pred HhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcc
Confidence 45566778888888888888888999999999999999999999999999999999999999999999999999998655
Q ss_pred cc
Q psy13326 92 VS 93 (143)
Q Consensus 92 ~k 93 (143)
-|
T Consensus 333 sk 334 (367)
T KOG1582|consen 333 SK 334 (367)
T ss_pred cC
Confidence 55
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.35 E-value=0.0011 Score=52.40 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHH
Q psy13326 15 STKVIFLLCLDGMLS-WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVL 87 (143)
Q Consensus 15 ~~~~~~~l~lsg~~a-f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~ 87 (143)
+...+..++..|+++ .+....-+..+++.++-+.++...+.-++.+++++++++|++++.+++|.++.+.|++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 187 LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 344454455444443 4555567889999999999999999999999999999999999999999999999863
No 24
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.32 E-value=0.0014 Score=53.83 Aligned_cols=81 Identities=15% Similarity=0.089 Sum_probs=63.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHH-HHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 13 DSSTKVIFLLCLDGMLSWLQNIL-AFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 13 ~~~~~~~~~l~lsg~~af~~N~s-~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
+.+...+..++..|+++-...+. -+..+++.+|.+.++...+--++.+++|++++||++++.+++|.+++++|+++=.+
T Consensus 208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 34455566666666555444433 34678899999999999999999999999999999999999999999999987554
Q ss_pred cc
Q psy13326 92 VS 93 (143)
Q Consensus 92 ~k 93 (143)
.+
T Consensus 288 ~~ 289 (299)
T PRK11453 288 GL 289 (299)
T ss_pred ch
Confidence 44
No 25
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.25 E-value=0.0019 Score=46.00 Aligned_cols=74 Identities=20% Similarity=0.307 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326 19 IFLLCLDGMLSW-LQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 19 ~~~l~lsg~~af-~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k 93 (143)
+.++++.|++.. ..+...++-++..++ ..+++-.+--++..++|.++|+|++++.+++|+.++++|+++=.+..
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 34 WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 334555566555 555566666666665 55577778888999999999999999999999999999998855443
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.23 E-value=0.0014 Score=52.23 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
.+..+.+.|++..+.+.+-++.++.+++-+-+++...--+.+.+++.++++|+++..+++|++++++|+.+
T Consensus 69 ~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l 139 (256)
T TIGR00688 69 LILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS 139 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34567788888888888889999999999999999999999999999999999999999999999999874
No 27
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.23 E-value=0.0014 Score=51.71 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
..+++..+++..+.+...|.-++.+++-+-+++-.+.-+++.+++.++++|++++.+++|++++++|+++..
T Consensus 47 ~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~ 118 (260)
T TIGR00950 47 LRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL 118 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence 445566666667888888999999998888999999999999999999999999999999999999998865
No 28
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.21 E-value=0.0018 Score=53.12 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
+.+..+++.++.....+.+-|+-++.+++..-+++..+--+++.++++++++|+++..+++|++++++|+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li 143 (296)
T PRK15430 71 QKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQ 143 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3344455666777778889999999999999999999999999999999999999999999999999998764
No 29
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.20 E-value=0.002 Score=46.62 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=36.8
Q ss_pred hhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 46 LTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 46 LT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
+.|.+.. +--+.+.++|+++|+|++++.+++|+++.++|+++
T Consensus 65 ~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~ 106 (111)
T PRK15051 65 IAYPMLS-LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVI 106 (111)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3566665 77788899999999999999999999999999876
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.19 E-value=0.0015 Score=55.90 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhc------cCCcccccchhhHHHHHHHHHHH
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA------LGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~i------fg~~ls~~~~iG~~lal~G~~lY 89 (143)
.+.+..+++.|+++++++...+.-++.+||-.-+++..+--+++.++++++ ++|++++.+++|++++++|+++=
T Consensus 75 ~~~~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll 154 (358)
T PLN00411 75 VSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVV 154 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHH
Confidence 455677777888887788889999999999999999999999999999999 69999999999999999999864
Q ss_pred h
Q psy13326 90 N 90 (143)
Q Consensus 90 s 90 (143)
.
T Consensus 155 ~ 155 (358)
T PLN00411 155 I 155 (358)
T ss_pred H
Confidence 4
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.18 E-value=0.00036 Score=52.77 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=61.0
Q ss_pred ccCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHH
Q psy13326 4 AHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAI 83 (143)
Q Consensus 4 a~g~~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal 83 (143)
+.|+..-..+.+++.|.++++||+..-+--++-|..++.=-+=-..=+--.--++.+++|+++++|.+|..+++|+.+..
T Consensus 52 ~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~ 131 (140)
T COG2510 52 VTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIV 131 (140)
T ss_pred hcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35666655667889999999999877776666666665321111111111223567889999999999999999999999
Q ss_pred HHHHHH
Q psy13326 84 CGVLAY 89 (143)
Q Consensus 84 ~G~~lY 89 (143)
+|..+-
T Consensus 132 ~Gailv 137 (140)
T COG2510 132 IGAILV 137 (140)
T ss_pred hCeeeE
Confidence 998753
No 32
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.13 E-value=0.0034 Score=51.33 Aligned_cols=77 Identities=6% Similarity=-0.013 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 16 TKVIFLLCLDGML-SWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 16 ~~~~~~l~lsg~~-af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
...+..++.-+++ ...-...-+..+++.++-+.++...+.-+...++++++++|++++.+++|.++.+.|+++-+..
T Consensus 209 ~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 209 LSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 3444456777889999999999999999999999999999999999999999999999987654
No 33
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.09 E-value=0.0023 Score=52.00 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
..+..+++.++....+..+.+...+..++-.-++.....-+++.++++++++|++++.+++|++++++|+++=.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 61 TFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 34556777888888888888888888888888888888889999999999999999999999999999998643
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.05 E-value=0.0032 Score=53.36 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
...+..++.-|++++..+...+..++.+++-..+++-.+--+++.+++.++++|++++.+++|++++++|+++=.
T Consensus 111 ~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 111 KLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 446778888888888888888888999999999999999999999999999999999999999999999998743
No 35
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=96.82 E-value=0.0026 Score=51.69 Aligned_cols=71 Identities=14% Similarity=0.225 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
.+..+...++...+-...-+..+++.++-..+....+--++.+++|++++||++++.+++|.+++++|+++
T Consensus 210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 34445666666666666777888888887777777777789999999999999999999999999999875
No 36
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.73 E-value=0.012 Score=46.18 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHHHHHHHH-HHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 14 SSTKVIFLLCLDGMLSWL-QNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 14 ~~~~~~~~l~lsg~~af~-~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+...+..++..|++... .-..-+..++..++...++...+.-+..+++++++++|+++..+++|.++.+.|+.+....
T Consensus 209 ~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 209 ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 344556666666666653 5556678899999999999998888888999999999999999999999999999998876
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=96.71 E-value=0.0054 Score=50.57 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccccc
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGC 98 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~~ 98 (143)
+...+.-+++.++-+..+...++..|-=|+.+.-..|-+++.++++++++++.++.++++.++..+|++.....+.++.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 64 LKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 34445557788888888999999999999999999999999999999999999999999999999999999988766553
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.63 E-value=0.012 Score=43.87 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccChh--hHhhhhhhhhHHHhhhhh--hccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 23 CLDGMLSWLQNILAFSVMSLVTSL--TYAVASASKRIFVIAVSL--LALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 23 ~lsg~~af~~N~s~f~~i~~tSaL--T~sV~g~lK~i~~ivls~--~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
+..|+..+...+......-+.-|+ .+.+.+.. -+.+.+.++ ++|+|++|+.+++|+++.++|+++-+.
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~-~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLS-YALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 445555555544433333333343 33333222 234445555 389999999999999999999999664
No 39
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.62 E-value=0.014 Score=42.47 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=42.4
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+.+-+..
T Consensus 57 ~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 57 GIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 357888777888899999999999999999999999999999986543
No 40
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.56 E-value=0.012 Score=43.61 Aligned_cols=48 Identities=15% Similarity=0.314 Sum_probs=42.2
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+..=+..
T Consensus 57 siAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 57 GVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 457888777888899999999999999999999999999999886443
No 41
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.48 E-value=0.017 Score=42.08 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=41.6
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
.+.|++-..+-.+.+.++|+++|+|++++.+++|+++.+.|+..=
T Consensus 62 gvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 62 SVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999999999999999873
No 42
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.46 E-value=0.02 Score=41.39 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=42.6
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
.+.|++-..+-.+.+.++|+++|+|++++.+++|+++.++|+..=+
T Consensus 56 gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 56 GTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999999999999999999999999998743
No 43
>KOG2234|consensus
Probab=96.28 E-value=0.013 Score=50.44 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 18 VIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 18 ~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
-...+...+++..++|-..|..+...+|.||+|...+|-.-+-++++++.+++++..||.-.++.++|+.+=+
T Consensus 91 ~~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 91 ETLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999999999999999876
No 44
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.28 E-value=0.0096 Score=50.94 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k 93 (143)
|.++++ |++=..-|+......+.||-.+.++....--++++++|+++++++.++.+++|+.++++|+.+=....
T Consensus 80 w~y~ll-a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD 153 (334)
T PF06027_consen 80 WKYFLL-ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSD 153 (334)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeec
Confidence 444444 78889999999999999999999999999999999999999999999999999999999998755443
No 45
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.23 E-value=0.024 Score=41.33 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=43.4
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+.|++-+-.=.+.+.++|+++|+|++++.+++|+++.++|+..-+..
T Consensus 57 gvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 57 GVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 458999999999999999999999999999999999999999875543
No 46
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.91 E-value=0.042 Score=45.33 Aligned_cols=76 Identities=21% Similarity=0.170 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhhHhhhhhhhhHHHhhhhhhccCCcccccch----hhHHHHHHHHHHHh
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMS-LVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV----FGMMLAICGVLAYN 90 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~-~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~----iG~~lal~G~~lYs 90 (143)
.+..+..++.|++....+..-+.-.+ ...+-+.++...+--++.++.++++++|+.++.|+ +|+++.+.|+.+=.
T Consensus 208 ~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 208 KYAILLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 34444455588886555655556667 89999999999999999999999999999999999 99999999998744
Q ss_pred h
Q psy13326 91 K 91 (143)
Q Consensus 91 ~ 91 (143)
.
T Consensus 288 ~ 288 (290)
T TIGR00776 288 I 288 (290)
T ss_pred c
Confidence 3
No 47
>PRK11689 aromatic amino acid exporter; Provisional
Probab=95.73 E-value=0.04 Score=45.18 Aligned_cols=69 Identities=17% Similarity=0.126 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----hccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 22 LCLDGMLSWLQNILAFSVM----SLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 22 l~lsg~~af~~N~s~f~~i----~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
+++.++....++...|.-+ +.+++..-+++..+--+++.++++++++|++++.+++|++++++|+++-.
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 3444544444554444433 34566666788888888999999999999999999999999999997743
No 48
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=95.47 E-value=0.073 Score=41.69 Aligned_cols=77 Identities=21% Similarity=0.267 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhh-hccCCcccccchhhHHHHHHHHHHHhhcccc
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSL-LALGNPVTGTNVFGMMLAICGVLAYNKVSTY 95 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~-~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~ 95 (143)
+..++..++........-|..+..+++-..++....--+.+.+++. ++++|++++.+++|+.+.++|+++-......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 70 LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 3455555555566666667778889999999999999999999996 6679999999999999999999986655444
No 49
>KOG2234|consensus
Probab=95.41 E-value=0.056 Score=46.66 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=73.1
Q ss_pred CCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHH
Q psy13326 7 NSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGV 86 (143)
Q Consensus 7 ~~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~ 86 (143)
+.+..++++...|..++.+++-+.+.. ++++...-+...-+..+--+++.++|+.+|+-++|..=.+|+.+++..+
T Consensus 242 ~~gff~G~s~~vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si 317 (345)
T KOG2234|consen 242 EYGFFYGYSSIVWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSI 317 (345)
T ss_pred cCCccccccHHHHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Confidence 344567888899999999988876665 4678888888888888888999999999999999999999999999999
Q ss_pred HHHhhccccc
Q psy13326 87 LAYNKVSTYT 96 (143)
Q Consensus 87 ~lYs~~k~~~ 96 (143)
.+|+....++
T Consensus 318 ~lY~~~P~~~ 327 (345)
T KOG2234|consen 318 FLYSLYPARD 327 (345)
T ss_pred HHhhcCCccc
Confidence 9999666655
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=95.08 E-value=0.14 Score=41.88 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-hccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 17 KVIFLLCLDGMLSW-LQNILAFSVM-SLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 17 ~~~~~l~lsg~~af-~~N~s~f~~i-~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
+.+...++.|++.+ ..+...+... ..+++-.-++.-.+--+++.+++.+ ++|+++..+++|+.++++|+++-.
T Consensus 66 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~ 140 (292)
T PRK11272 66 RQWLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLN 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHh
Confidence 34555566666553 3344445555 6666656677777778888888875 799999999999999999987754
No 51
>KOG3912|consensus
Probab=94.80 E-value=0.02 Score=48.88 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 30 WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 30 f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+.|++...+.+..|+.|-.++-.+|..++=++++..+-|.+...|+.|.++.+.|+++|+-.
T Consensus 273 AffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 273 AFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred eeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999999999854
No 52
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.76 E-value=0.085 Score=36.74 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=24.4
Q ss_pred hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHH
Q psy13326 45 SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLA 82 (143)
Q Consensus 45 aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~la 82 (143)
++.|.+-..+-.+.+.++|+++|+|++|+.+++|+++.
T Consensus 56 ~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 56 SVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34778877788899999999999999999999999863
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=94.24 E-value=0.22 Score=40.80 Aligned_cols=55 Identities=22% Similarity=0.404 Sum_probs=42.2
Q ss_pred HHHHHhcc-ChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 36 AFSVMSLV-TSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 36 ~f~~i~~t-SaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
.|..+..+ ++-.-+++..+--+++.++++++++|+++..+++|++++++|+++=.
T Consensus 76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 34445553 33344556666678899999999999999999999999999987644
No 54
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=92.65 E-value=0.3 Score=40.29 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhH-hhhhhhhhHHHhhhhhhccCCcccccc----hhhHHHHHHHHHHHh
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTY-AVASASKRIFVIAVSLLALGNPVTGTN----VFGMMLAICGVLAYN 90 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~-sV~g~lK~i~~ivls~~ifg~~ls~~~----~iG~~lal~G~~lYs 90 (143)
...+..=+++|++=-..|++-|..++.++.=+- .+...+--+...+.+.++|+|+.+..+ ++|++++++|+++..
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 455555666666666667777777776543322 222334445777899999999999999 999999999999976
Q ss_pred hcc
Q psy13326 91 KVS 93 (143)
Q Consensus 91 ~~k 93 (143)
..+
T Consensus 136 ~~~ 138 (290)
T TIGR00776 136 RSK 138 (290)
T ss_pred ecc
Confidence 654
No 55
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=92.57 E-value=0.61 Score=39.50 Aligned_cols=84 Identities=15% Similarity=0.302 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccChh-hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 14 SSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSL-TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 14 ~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaL-T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.....+.+++++|...-.= +..|..-.+-=|+ |..+..-.--....++++++|+|+++..+++..+..-.|.++|+..
T Consensus 206 ~~~~~~~LLv~aG~vTavp-L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 206 NANSLWLLLVLAGLVTAVP-LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred CCchHHHHHHHhhHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777655322 2333333333233 5555556666788999999999999999999999999999999988
Q ss_pred cccccc
Q psy13326 93 STYTGC 98 (143)
Q Consensus 93 k~~~~~ 98 (143)
..++++
T Consensus 285 ~l~~~r 290 (293)
T COG2962 285 GLYTAR 290 (293)
T ss_pred HHHHHh
Confidence 776543
No 56
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.21 E-value=0.31 Score=39.67 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=57.9
Q ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHH
Q psy13326 9 QFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMML 81 (143)
Q Consensus 9 ~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~l 81 (143)
+...+++...|..+++.++.+.+. -.++++.+.+.-..+..+--+++.++++++|+.++|..-.+|.++
T Consensus 175 g~f~G~~~~~~~~i~~~a~gGllv----a~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 175 GFFHGYSWWVWIVIFLQAIGGLLV----AFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred CchhhcchHHHHHHHHHHHhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 334567777888888777766654 458899999999999999999999999999999999999988765
No 57
>KOG2765|consensus
Probab=92.14 E-value=0.2 Score=44.09 Aligned_cols=81 Identities=12% Similarity=0.179 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~ 96 (143)
....+-+.-|.+=|+.|++.-..++.||.-..+++...-..+++.++.++-+|.+|+.+.++..+.++|+++-+..+.++
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 34556677788999999999999999999999999999999999999999999999999999999999999877766655
Q ss_pred c
Q psy13326 97 G 97 (143)
Q Consensus 97 ~ 97 (143)
+
T Consensus 237 ~ 237 (416)
T KOG2765|consen 237 N 237 (416)
T ss_pred c
Confidence 3
No 58
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=89.16 E-value=1 Score=33.69 Aligned_cols=72 Identities=15% Similarity=0.328 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHH-hhhhhh-ccC---CcccccchhhHHHHHHHHHH
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFV-IAVSLL-ALG---NPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~-ivls~~-ifg---~~ls~~~~iG~~lal~G~~l 88 (143)
...++..+.|+++..+-.+....+.+.++.+..+....=+++. +++-.+ +|+ +++++.+++|+.+.++|+++
T Consensus 62 ~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 62 SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3445666699999999999999999999988877776666544 444443 343 67999999999999999863
No 59
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=89.08 E-value=1.1 Score=38.03 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSV-MSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~-i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
++.+..+++++++- ..|...|.- .+.=..+--|.-=-..-.+.+++|.++++|.++..|++-+.++.+|+..-
T Consensus 69 p~~~~~~~l~a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~ 142 (293)
T COG2962 69 PKTLLMLALTALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQ 142 (293)
T ss_pred cHHHHHHHHHHHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 45555555555543 345554432 33333444444445667788999999999999999999999999998653
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=87.46 E-value=2.8 Score=35.03 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=56.1
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCCcccccc----hhhHHHHHH
Q psy13326 10 FSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVT-SLTYAVASASKRIFVIAVSLLALGNPVTGTN----VFGMMLAIC 84 (143)
Q Consensus 10 ~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~----~iG~~lal~ 84 (143)
|..+.+...++.-+++|++=-+-|+..|.-.++.+ +.|+=+...+-=+...+.++++|||--+..+ .+++++.++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 34444456777777777766555555555554433 2333344444456678899999999765443 447788889
Q ss_pred HHHHHhhccccccc
Q psy13326 85 GVLAYNKVSTYTGC 98 (143)
Q Consensus 85 G~~lYs~~k~~~~~ 98 (143)
|.++=++.++++.+
T Consensus 116 Gv~lts~~~~~~~~ 129 (269)
T PF06800_consen 116 GVILTSYQDKKSDK 129 (269)
T ss_pred HHHHhccccccccc
Confidence 99887766655543
No 61
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.43 E-value=0.62 Score=38.57 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=25.7
Q ss_pred ccccchhhHHHHHHHHHHHhhccccccchh
Q psy13326 71 VTGTNVFGMMLAICGVLAYNKVSTYTGCAR 100 (143)
Q Consensus 71 ls~~~~iG~~lal~G~~lYs~~k~~~~~~~ 100 (143)
-.++|++|++++++|..+|...|.++++.+
T Consensus 114 ~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~ 143 (254)
T PF07857_consen 114 SPWLNYIGVALVLVSGIIFSFIKSEEKEPK 143 (254)
T ss_pred hhHHHHHHHHHHHHHHHheeeecCCCCCcc
Confidence 357899999999999999999998876543
No 62
>KOG4510|consensus
Probab=86.18 E-value=0.12 Score=43.82 Aligned_cols=69 Identities=20% Similarity=0.353 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 22 LCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 22 l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
+++-|++++.--+..|+.....|----+|+.-.--++++++++++++||.|..+.+|..+++.|+.+-.
T Consensus 100 LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 100 LILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred EEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 445566665555556665555443333445555678999999999999999999999999999998743
No 63
>KOG3912|consensus
Probab=84.86 E-value=1.9 Score=37.07 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
..+..++.+.++...+| .|||-.+++.--.--|++-++|..+.+..++..+|+|+..+++|...
T Consensus 92 Pal~Di~gsslm~vgL~--------lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlvi 155 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLN--------LTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVI 155 (372)
T ss_pred hHHHHHhhhHHHHHHHH--------HhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhe
Confidence 33444455555554444 58888888876666777788888899999999999999999999865
No 64
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=83.10 E-value=4.4 Score=34.20 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=50.9
Q ss_pred HHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 36 AFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 36 ~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
+...+.+.++=++++.-.+.-.+--+.|+++.+|.+|+.||.|+..++.+..--+.
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 56778999999999999999999999999999999999999999999998875443
No 65
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=82.96 E-value=0.65 Score=34.10 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=44.0
Q ss_pred HHHHHHHHH----HHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 28 LSWLQNILA----FSVMSLVT-SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 28 ~af~~N~s~----f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
..|++|++. |++++++. +++.-+++.+--+++.+.++++.++..++..++|+.+++.|+.+
T Consensus 46 ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 46 IPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 345555543 23344332 33555677888889999999988888899999999999999753
No 66
>KOG2766|consensus
Probab=82.90 E-value=1.6 Score=37.07 Aligned_cols=81 Identities=10% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhh
Q psy13326 12 SDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNK 91 (143)
Q Consensus 12 ~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~ 91 (143)
.+|+.+...++. ..++-|+.=-..=.+++.+|+..+++.--.-+.-.+++ ..||-++.|+-++..+.+..|.+.|+-
T Consensus 223 l~w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 223 LHWDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred EeehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 345555555555 33444444334567788889988888766667666665 778888999999999999999999954
Q ss_pred cccc
Q psy13326 92 VSTY 95 (143)
Q Consensus 92 ~k~~ 95 (143)
..++
T Consensus 300 re~~ 303 (336)
T KOG2766|consen 300 REKD 303 (336)
T ss_pred cccC
Confidence 4333
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=81.56 E-value=3.7 Score=34.42 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 35 LAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 35 s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
..|...+...+...+=.|.+--+...+++.++.+|+++...++|++++++|..+--
T Consensus 66 ~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 66 LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 33444444444445556777788899999999999999999999999999997644
No 68
>KOG4812|consensus
Probab=79.71 E-value=4.5 Score=33.67 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhc---cCC----cccccchhhHHHHHHHHHH---
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLA---LGN----PVTGTNVFGMMLAICGVLA--- 88 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~i---fg~----~ls~~~~iG~~lal~G~~l--- 88 (143)
-..++.+-++||+.|...|++..-.+-.-..=-|+.-..-+.++.|++ |.+ ..+-+.|++-.++++|.++
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLikwilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr 239 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIKWILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLR 239 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhheeeEEeecccccccccccchHHHHHHHHHHHHHHHH
Confidence 456778888999999999988764332222222333333333333332 222 2455678888888888765
Q ss_pred --Hhhccccccch
Q psy13326 89 --YNKVSTYTGCA 99 (143)
Q Consensus 89 --Ys~~k~~~~~~ 99 (143)
|+|.|.|+.++
T Consensus 240 ~~i~YikVrrm~~ 252 (262)
T KOG4812|consen 240 GFINYIKVRRMEE 252 (262)
T ss_pred HHHhHHHHhhHHH
Confidence 56666665543
No 69
>KOG1581|consensus
Probab=78.75 E-value=4 Score=35.09 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~ 96 (143)
|......++.+-+-..+.|-.++..|=-|..++-.-|-+++++.+.++++.+.++..++-.+++-+|+..+...+...
T Consensus 83 l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 83 LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 334444455555555667888999999999999999999999999999999999999999999999999998886665
No 70
>KOG2765|consensus
Probab=72.39 E-value=3.1 Score=36.74 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccc
Q psy13326 15 STKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVST 94 (143)
Q Consensus 15 ~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~ 94 (143)
...+...++.+++-.++--+.=.+..-.||||+-++.-++---+.++.-+++=+.+.|+..++|...+++|.+.-++...
T Consensus 314 ~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 314 STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 34444445555555566566556667789999999888886667777777777999999999999999999999777654
Q ss_pred c
Q psy13326 95 Y 95 (143)
Q Consensus 95 ~ 95 (143)
.
T Consensus 394 ~ 394 (416)
T KOG2765|consen 394 N 394 (416)
T ss_pred c
Confidence 3
No 71
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.57 E-value=13 Score=28.63 Aligned_cols=73 Identities=12% Similarity=0.283 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHH-hhhhhh-ccC---CcccccchhhHHHHHHHHHHH
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFV-IAVSLL-ALG---NPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~-ivls~~-ifg---~~ls~~~~iG~~lal~G~~lY 89 (143)
...++..+.|+++..+-.++-....+.++.+..++...-+.+. +++-.+ +|+ .+++...++|+++.++|.++-
T Consensus 67 ~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 67 SAPWWAWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred CCchHHHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 3455677788999888888999999999888877766655543 222222 233 568999999999999996653
No 72
>PRK13499 rhamnose-proton symporter; Provisional
Probab=67.38 E-value=26 Score=30.30 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCC---ccc----ccchhhHHHHHHH
Q psy13326 14 SSTKVIFLLCLDGMLSWLQNILAFSVMSLVT-SLTYAVASASKRIFVIAVSLLALGN---PVT----GTNVFGMMLAICG 85 (143)
Q Consensus 14 ~~~~~~~~l~lsg~~af~~N~s~f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~---~ls----~~~~iG~~lal~G 85 (143)
.+...+..-+++|++=-.-|+..+..++..+ ++++.+..-+--+...+++.++|+| -++ ....+|++++++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777665 5677777777677778888888873 222 3467899999999
Q ss_pred HHHHhhc
Q psy13326 86 VLAYNKV 92 (143)
Q Consensus 86 ~~lYs~~ 92 (143)
+++=+++
T Consensus 148 i~l~s~A 154 (345)
T PRK13499 148 VAIVGRA 154 (345)
T ss_pred HHHHHHh
Confidence 9987764
No 73
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=65.55 E-value=5.9 Score=24.32 Aligned_cols=30 Identities=3% Similarity=-0.014 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhccccccchhhhccccccc
Q psy13326 79 MMLAICGVLAYNKVSTYTGCARKTLTMAQGR 109 (143)
Q Consensus 79 ~~lal~G~~lYs~~k~~~~~~~~k~~~~p~~ 109 (143)
..++++|+++|.+.+.++++- ++.+.+|.+
T Consensus 18 ~~~~F~gi~~w~~~~~~k~~~-e~aa~lpl~ 47 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRNKKRF-EEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHHcccchhhH-HHHHccCcc
Confidence 456778889999877764433 344446654
No 74
>KOG1580|consensus
Probab=64.70 E-value=7.5 Score=32.82 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=40.1
Q ss_pred hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 47 TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 47 T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
|.-+.-.-|-|.++++|+++-+.+.+|.++.-..+.++|++++-|-
T Consensus 113 TqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK 158 (337)
T KOG1580|consen 113 TQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYK 158 (337)
T ss_pred HHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcc
Confidence 4445556789999999999999999999999999999999997765
No 75
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=61.72 E-value=68 Score=26.03 Aligned_cols=76 Identities=17% Similarity=0.101 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhh----------------hhhhc-c--CCcccccchh
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIA----------------VSLLA-L--GNPVTGTNVF 77 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~iv----------------ls~~i-f--g~~ls~~~~i 77 (143)
+-+..++.-|++....+...|..++.+++-.-++....--+.+.+ +|+.+ . +...+..+..
T Consensus 69 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~~~~~~~~~~~i~~~Gv~li~~~~~~~~~~~~~ 148 (293)
T PRK10532 69 EQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLT 148 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHheeeecCCCcccCChH
Confidence 344445555566666677767666666544433333332222222 22222 2 2222233456
Q ss_pred hHHHHHHHHHHHhhc
Q psy13326 78 GMMLAICGVLAYNKV 92 (143)
Q Consensus 78 G~~lal~G~~lYs~~ 92 (143)
|..+++++.+.|...
T Consensus 149 G~ll~l~aa~~~a~~ 163 (293)
T PRK10532 149 GAALALGAGACWAIY 163 (293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666654
No 76
>KOG4314|consensus
Probab=61.25 E-value=5 Score=33.08 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=53.0
Q ss_pred HHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcccccc
Q psy13326 33 NILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 33 N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~ 97 (143)
|+.-...+.+.||---+-+-+-++.++-++++++.++.+...+++...+++.|+..-+|+....+
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 45555667788888777777888888999999999999999999999999999988777665544
No 77
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=58.91 E-value=10 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhccccccchhhh
Q psy13326 79 MMLAICGVLAYNKVSTYTGCARKT 102 (143)
Q Consensus 79 ~~lal~G~~lYs~~k~~~~~~~~k 102 (143)
+.+.++|+++|.+.+.++++-++.
T Consensus 19 ~~~~Figiv~wa~~p~~k~~f~ea 42 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKAFDEA 42 (48)
T ss_pred HHHHHHHHHHHHhCCCcchhHHHH
Confidence 568899999999998877765443
No 78
>KOG2922|consensus
Probab=58.22 E-value=7.4 Score=33.64 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=34.2
Q ss_pred hhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHH
Q psy13326 50 VASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAY 89 (143)
Q Consensus 50 V~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lY 89 (143)
=.|++--+...+++.++.+|++++...+|++++++|...-
T Consensus 95 PLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i 134 (335)
T KOG2922|consen 95 PLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI 134 (335)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence 3466666778899999999999999999999999998653
No 79
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=57.59 E-value=33 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccch----hhHHHHHHHHH
Q psy13326 19 IFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNV----FGMMLAICGVL 87 (143)
Q Consensus 19 ~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~----iG~~lal~G~~ 87 (143)
.+.=+++|++--.-|++.+.-.+..+.-+-=..+.+--++..+.|+++++|.=+..++ +|.++.++|..
T Consensus 195 ~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 195 SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 3445677887778888888888877777767777888889999999999998776654 47777777765
No 80
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=55.70 E-value=10 Score=25.55 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhhccccc
Q psy13326 76 VFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 76 ~iG~~lal~G~~lYs~~k~~~ 96 (143)
.+++|++++|.++|....++.
T Consensus 7 Li~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 579999999999999765543
No 81
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=48.19 E-value=13 Score=25.89 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.1
Q ss_pred cccccchhhHHHHHHHHHHHhhcccccc
Q psy13326 70 PVTGTNVFGMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 70 ~ls~~~~iG~~lal~G~~lYs~~k~~~~ 97 (143)
.+++..++|+.++++|..+|...+.+++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pe 31 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPE 31 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 4678899999999999999986655554
No 82
>PHA03049 IMV membrane protein; Provisional
Probab=46.57 E-value=18 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHHHhhccccc
Q psy13326 76 VFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 76 ~iG~~lal~G~~lYs~~k~~~ 96 (143)
.++++++++|.++|....++.
T Consensus 7 l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 578999999999999776554
No 83
>KOG1442|consensus
Probab=46.52 E-value=3.8 Score=35.10 Aligned_cols=81 Identities=12% Similarity=0.004 Sum_probs=57.0
Q ss_pred CcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHH
Q psy13326 8 SQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVL 87 (143)
Q Consensus 8 ~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~ 87 (143)
++|+.+.+.+....++=-.++..++.-+..+|++...-=-|.|--.+-.++.+++++++++++-+..-..++.+.++|..
T Consensus 91 tfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 91 TFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFG 170 (347)
T ss_pred ccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhe
Confidence 45566666555555554455555555666777777766667777778888999999999998877777777777777654
Q ss_pred H
Q psy13326 88 A 88 (143)
Q Consensus 88 l 88 (143)
+
T Consensus 171 l 171 (347)
T KOG1442|consen 171 L 171 (347)
T ss_pred e
Confidence 4
No 84
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=42.33 E-value=66 Score=29.26 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 16 TKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 16 ~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
....-.=+.+|+++++.-.....+-.+.--+.-+++-.+ .++.++..+.+++-.+|...+.|+.+++ |+..-.
T Consensus 339 ~~~i~~gi~Agl~g~~~V~vfm~~~Yr~~Gvia~ial~~-n~~lil~vls~lgatLtLpgIAGiILtI-GmaVDa 411 (506)
T COG0342 339 ADSIKAGLIAGLIGLALVAVFMLLYYRLAGVIAAIALGL-NGVLILAVLSLLGATLTLPGIAGIILTI-GMAVDA 411 (506)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHhcccccchhhhHHHHhh-hhcccc
Confidence 344555667777777775433333334333333333344 6677777777789999999999998876 555444
No 85
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=41.95 E-value=1.6e+02 Score=24.11 Aligned_cols=66 Identities=8% Similarity=-0.123 Sum_probs=42.1
Q ss_pred HHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccccchhhh
Q psy13326 37 FSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKT 102 (143)
Q Consensus 37 f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~~~~~~k 102 (143)
|.-.++...+-.-+.|..-....+..+....++...+.-++..+..+-..........++.|.+++
T Consensus 132 Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~ 197 (289)
T COG0382 132 YPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRK 197 (289)
T ss_pred HHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence 345677778878888888777777777777776555555556555555555555555566655443
No 86
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=41.58 E-value=22 Score=23.98 Aligned_cols=32 Identities=6% Similarity=0.076 Sum_probs=16.5
Q ss_pred Ccccccchh--h----HHHHHHHHHHHhhccccccchh
Q psy13326 69 NPVTGTNVF--G----MMLAICGVLAYNKVSTYTGCAR 100 (143)
Q Consensus 69 ~~ls~~~~i--G----~~lal~G~~lYs~~k~~~~~~~ 100 (143)
+.+++.||. | +++++++.+.=-|.|.++.+++
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~drr~ 63 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKEDRRK 63 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHhhhH
Confidence 455555554 3 4445555554445666555443
No 87
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.09 E-value=27 Score=22.95 Aligned_cols=33 Identities=9% Similarity=0.028 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHhhccccccchhh-hcccccccC
Q psy13326 78 GMMLAICGVLAYNKVSTYTGCARK-TLTMAQGRH 110 (143)
Q Consensus 78 G~~lal~G~~lYs~~k~~~~~~~~-k~~~~p~~~ 110 (143)
=+.+.++|+++|.+.+.++++.++ ++..+|+++
T Consensus 17 ~~~l~fiavi~~ayr~~~K~~~d~aa~~~l~l~D 50 (60)
T COG4736 17 AFTLFFIAVIYFAYRPGKKGEFDEAARGILPLND 50 (60)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHhccCCCCCc
Confidence 356778888888888777665544 333455553
No 88
>KOG2766|consensus
Probab=38.52 E-value=5.7 Score=33.83 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=45.9
Q ss_pred HHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHh
Q psy13326 38 SVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYN 90 (143)
Q Consensus 38 ~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs 90 (143)
..-+.||-++-+..-+--..++.+++|++...+..+.++.|.+++++|+..--
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 34466787888888888889999999999999999999999999999997643
No 89
>PRK11387 S-methylmethionine transporter; Provisional
Probab=37.68 E-value=83 Score=27.34 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=18.6
Q ss_pred chhhHHHHHHHHHHHhhccccccc
Q psy13326 75 NVFGMMLAICGVLAYNKVSTYTGC 98 (143)
Q Consensus 75 ~~iG~~lal~G~~lYs~~k~~~~~ 98 (143)
.++|+.+.++|...|...|+++|+
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T PRK11387 438 LWCGIPFVALCYGAYYLTQRLKRN 461 (471)
T ss_pred HHHHHHHHHHHHHHHHHhcccccc
Confidence 467899999999999887665443
No 90
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.14 E-value=1.7e+02 Score=21.47 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHh---ccChhhHhhh--hhhhhHHH----hhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 27 MLSWLQNILAFSVMS---LVTSLTYAVA--SASKRIFV----IAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 27 ~~af~~N~s~f~~i~---~tSaLT~sV~--g~lK~i~~----ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
+..+..-+.+|.+-- +.+...+++. -++.++++ ...|++..+||+.+..+.|.++.+.|+.+
T Consensus 42 ~~SWGIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 42 LASWGIAFFEYLLQVPANRIGHQVYSAAQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHhhHHHHHHHHhCccchhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 344555566666543 3333333331 23344444 34678889999999999988777766543
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=34.86 E-value=1e+02 Score=25.84 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-----hhhHhhhhhhhhHHHhhhhhhccCCc--ccccc----hhhHHHHHHHH
Q psy13326 18 VIFLLCLDGMLSWLQNILAFSVMSLVT-----SLTYAVASASKRIFVIAVSLLALGNP--VTGTN----VFGMMLAICGV 86 (143)
Q Consensus 18 ~~~~l~lsg~~af~~N~s~f~~i~~tS-----aLT~sV~g~lK~i~~ivls~~ifg~~--ls~~~----~iG~~lal~G~ 86 (143)
.|.+++..-+++..+-..-...+++.+ |+.+.... ...++.|.++|+|- .++.+ ..|..+.+.|+
T Consensus 212 ~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t----~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV 287 (300)
T PF05653_consen 212 TYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFT----LSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGV 287 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHH----HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 334444444444444433344444444 45555443 36788889999863 55544 34777788888
Q ss_pred HHHhhccc
Q psy13326 87 LAYNKVST 94 (143)
Q Consensus 87 ~lYs~~k~ 94 (143)
++=+..|.
T Consensus 288 ~lL~~~~~ 295 (300)
T PF05653_consen 288 FLLSSSKD 295 (300)
T ss_pred heeeccCc
Confidence 77544433
No 92
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=34.11 E-value=17 Score=21.16 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHhhcccccc
Q psy13326 78 GMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 78 G~~lal~G~~lYs~~k~~~~ 97 (143)
-+.+++.|..+|.+-|++++
T Consensus 5 ~i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 5 AIILILGGAAFYGFKKYQNH 24 (33)
T ss_pred eehhhhhhHHHHHHHHHHHH
Confidence 35688899999999888854
No 93
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=30.25 E-value=29 Score=25.40 Aligned_cols=28 Identities=18% Similarity=0.384 Sum_probs=22.6
Q ss_pred hhhhhhccCCcccccchhhHHHHHHHHH
Q psy13326 60 IAVSLLALGNPVTGTNVFGMMLAICGVL 87 (143)
Q Consensus 60 ivls~~ifg~~ls~~~~iG~~lal~G~~ 87 (143)
...++++++|++++....|.+..+++++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4567888999999999999888776653
No 94
>PF14927 Neurensin: Neurensin
Probab=29.15 E-value=1.6e+02 Score=22.44 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 14 SSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 14 ~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
|+..+|..-+++|++ +++--.+..+++.+=|=-.-+.+.......+=--.+.|++.+....+.|+++.-+|.++
T Consensus 39 w~s~~wkV~~i~g~l-~Ll~Gi~~l~vgY~vP~~~e~~~~~~~~~~vD~~a~~~n~~Ld~c~laG~~L~~lGg~l 112 (140)
T PF14927_consen 39 WSSVCWKVGFISGLL-LLLLGIVALTVGYLVPPKIEVFGEAGEFVVVDSQAARFNNALDTCKLAGLILLCLGGIL 112 (140)
T ss_pred CcchhHHHHHHHHHH-HHHHHHHHHHhhcccCCcceeccccccccccchHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334445444444444 33334455666666555445555544444444445678888999999999887777644
No 95
>KOG4510|consensus
Probab=28.58 E-value=47 Score=28.57 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHH--HHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhccccc
Q psy13326 24 LDGMLSWLQNILAFS--VMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYT 96 (143)
Q Consensus 24 lsg~~af~~N~s~f~--~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k~~~ 96 (143)
.-|+.+|+-++..-+ .+.+.+|+ ++...+.-+...+--+++|++-.++-.|.|+++++....|-...|..+
T Consensus 258 ~lGvfgfigQIllTm~lQiErAGpv--aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 258 NLGVFGFIGQILLTMGLQIERAGPV--AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred EehhhhhHHHHHHHHHhhhhccCCe--ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 335555555544433 45566665 455566666777778889999999999999999998888766555443
No 96
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=23.97 E-value=2.2e+02 Score=22.77 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.6
Q ss_pred cccccchhhHHHHHHHHHHHhhccccccch
Q psy13326 70 PVTGTNVFGMMLAICGVLAYNKVSTYTGCA 99 (143)
Q Consensus 70 ~ls~~~~iG~~lal~G~~lYs~~k~~~~~~ 99 (143)
++++..++|+++.++|+++-+.+..|..+-
T Consensus 116 ~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~f 145 (235)
T PF06966_consen 116 PLNWLDILGIALFLIGFLLETVADQQKYRF 145 (235)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999998887776644
No 97
>PRK02237 hypothetical protein; Provisional
Probab=23.91 E-value=1.2e+02 Score=22.20 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=36.1
Q ss_pred hhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 46 LTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 46 LT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
=+|+.-|-+=-+.+++-++.+-+.+++.--++|.+++++|+..
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~i 102 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAV 102 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHH
Confidence 3677778777777777788888999999999999999999865
No 98
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.88 E-value=73 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.393 Sum_probs=27.4
Q ss_pred hHHHhhhhhhccCCcccccchhhHHHHHHHHH
Q psy13326 56 RIFVIAVSLLALGNPVTGTNVFGMMLAICGVL 87 (143)
Q Consensus 56 ~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~ 87 (143)
-.+.++.|+++-+...+..+.+|+.+++.|++
T Consensus 76 s~vLil~g~~la~t~~~~i~~ig~~l~li~il 107 (143)
T COG3296 76 SFVLILAGVFLAATDISFIIIIGFFLTLIGIL 107 (143)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 44567788888888999999999999999988
No 99
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=23.66 E-value=55 Score=19.81 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHhhcccc
Q psy13326 77 FGMMLAICGVLAYNKVSTY 95 (143)
Q Consensus 77 iG~~lal~G~~lYs~~k~~ 95 (143)
+|..++++|.++|-++|++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 3566677777777655543
No 100
>COG4244 Predicted membrane protein [Function unknown]
Probab=23.45 E-value=3.4e+02 Score=21.15 Aligned_cols=82 Identities=15% Similarity=0.164 Sum_probs=52.7
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc--cChhh---HhhhhhhhhHHHhhhhhhc---cCCcccccchhhHHHH
Q psy13326 11 SSDSSTKVIFLLCLDGMLSWLQNILAFSVMSL--VTSLT---YAVASASKRIFVIAVSLLA---LGNPVTGTNVFGMMLA 82 (143)
Q Consensus 11 ~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~--tSaLT---~sV~g~lK~i~~ivls~~i---fg~~ls~~~~iG~~la 82 (143)
.++.+.+.+..-++.++++++.-++.++...+ ...-+ +.+.|..--++..++..+. -.++.....+.|..+.
T Consensus 47 ~~~vs~wn~~~a~i~~~~A~~~g~~e~lla~~~~~a~~~a~wh~~lG~il~~~la~~~~~r~~~~~~~~~~v~~~~L~ls 126 (160)
T COG4244 47 WFDVSWWNLFAALIAGFFAVIAGLFEFLLARPGGAAKQAAEWHHVLGNILLIVLAILTAWRYVHRNDAVAAVSPAGLLLS 126 (160)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccHHHHHHH
Confidence 45666677777788889999999999999988 33333 3333433333333333333 3466777778888888
Q ss_pred HHHHHHHhhc
Q psy13326 83 ICGVLAYNKV 92 (143)
Q Consensus 83 l~G~~lYs~~ 92 (143)
++.+++=...
T Consensus 127 l~~~~Lv~l~ 136 (160)
T COG4244 127 LATVLLVALQ 136 (160)
T ss_pred HHHHHHHHHH
Confidence 8777664443
No 101
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.09 E-value=63 Score=21.13 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=16.2
Q ss_pred cchhhHHHHHHHHHHHhhc
Q psy13326 74 TNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 74 ~~~iG~~lal~G~~lYs~~ 92 (143)
.-++|-.++++|.++|-..
T Consensus 8 ~~~~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 8 ALFVGGFVGLIGAALYPIY 26 (58)
T ss_pred hhhHHHHHHHHHHHHhhhh
Confidence 4578899999999999876
No 102
>KOG4831|consensus
Probab=22.12 E-value=1.2e+02 Score=22.50 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=30.4
Q ss_pred HHHHhccC-hhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 37 FSVMSLVT-SLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 37 f~~i~~tS-aLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
|+++.+++ +++.-|.+.+--+++...|..+=.+--.-.-+.|+.++..|+.+
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 44444433 12333445555555556665554444556778899999999865
No 103
>PRK10655 potE putrescine transporter; Provisional
Probab=21.87 E-value=3.5e+02 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHHHhhcccccc
Q psy13326 75 NVFGMMLAICGVLAYNKVSTYTG 97 (143)
Q Consensus 75 ~~iG~~lal~G~~lYs~~k~~~~ 97 (143)
-..|..+.++|..+|.+..++.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~ 432 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGLISPRFE 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 35688889999999987655544
No 104
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.69 E-value=43 Score=23.00 Aligned_cols=21 Identities=5% Similarity=0.081 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhccccccchh
Q psy13326 80 MLAICGVLAYNKVSTYTGCAR 100 (143)
Q Consensus 80 ~lal~G~~lYs~~k~~~~~~~ 100 (143)
.+.+.+++++-..+-++|+++
T Consensus 9 ~vv~~~i~yf~~~rpqkK~~k 29 (84)
T TIGR00739 9 LVLIFLIFYFLIIRPQRKRRK 29 (84)
T ss_pred HHHHHHHHHHheechHHHHHH
Confidence 334444444444444444333
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=20.95 E-value=1.5e+02 Score=21.66 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=35.0
Q ss_pred hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHH
Q psy13326 47 TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLA 88 (143)
Q Consensus 47 T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~l 88 (143)
+|+.-|-+=-+.+++-++.+-+.+.+.--++|.+++++|+..
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~i 100 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAI 100 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHh
Confidence 677777777777777778888888999999999999999865
No 106
>KOG1441|consensus
Probab=20.72 E-value=56 Score=27.93 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccc----------------------c
Q psy13326 17 KVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTG----------------------T 74 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~----------------------~ 74 (143)
..+.-++--|++.++-......-+.+.+-=.+.++.++--+.+.+++.+++++..++ .
T Consensus 81 ~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~f 160 (316)
T KOG1441|consen 81 LPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSF 160 (316)
T ss_pred cchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccc
Confidence 344455555666666666666667777766778888888888999999988887654 6
Q ss_pred chhhHHHHHHHHHHHh
Q psy13326 75 NVFGMMLAICGVLAYN 90 (143)
Q Consensus 75 ~~iG~~lal~G~~lYs 90 (143)
+++|...++++.+...
T Consensus 161 n~~G~i~a~~s~~~~a 176 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFA 176 (316)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7778877777775544
No 107
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.40 E-value=96 Score=18.59 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHhhccccccc
Q psy13326 76 VFGMMLAICGVLAYNKVSTYTGC 98 (143)
Q Consensus 76 ~iG~~lal~G~~lYs~~k~~~~~ 98 (143)
.+|+++.++-+++|.-..++.++
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHccccc
Confidence 45888888888899877666554
Done!