Query psy13326
Match_columns 143
No_of_seqs 116 out of 1026
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 16:38:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 97.5 0.00016 5.4E-09 53.3 5.9 57 37-93 48-105 (137)
2 3b5d_A Multidrug transporter E 97.1 0.0015 5E-08 45.9 7.1 50 43-92 53-104 (110)
3 3l1l_A Arginine/agmatine antip 36.3 1E+02 0.0034 24.6 6.8 24 75-98 410-433 (445)
4 2rdd_B UPF0092 membrane protei 28.8 31 0.0011 19.2 1.8 25 80-104 9-33 (37)
5 2h3o_A MERF; membrane protein, 11.1 80 0.0027 19.9 0.9 16 81-96 41-56 (61)
6 3aqp_A Probable secdf protein- 10.1 6.6E+02 0.023 22.3 6.9 29 56-84 308-336 (741)
7 1l2w_I Outer membrane virulenc 9.7 59 0.002 20.4 -0.2 20 39-58 43-62 (69)
8 2vpz_C Hypothetical membrane s 9.1 6.2E+02 0.021 19.1 8.7 76 1-77 1-78 (253)
9 3few_X Colicin S4; cell lysis, 7.7 5.9E+02 0.02 22.0 5.1 54 30-88 428-482 (505)
10 3ne5_A Cation efflux system pr 7.2 6.6E+02 0.023 23.0 5.7 78 17-101 878-964 (1054)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.52 E-value=0.00016 Score=53.33 Aligned_cols=57 Identities=25% Similarity=0.341 Sum_probs=36.9
Q ss_pred HHHHhccChh-hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhcc
Q psy13326 37 FSVMSLVTSL-TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 37 f~~i~~tSaL-T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~k 93 (143)
+..+++..+- .|.+...+--++++++|+++|+|++++.+++|++++++|+++.+..+
T Consensus 48 ~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3345544433 44554678888999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.14 E-value=0.0015 Score=45.93 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=41.8
Q ss_pred cChh--hHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 43 VTSL--TYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 43 tSaL--T~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.-|+ .|.+...+--+.+.++++++|+|++++.+++|+++.++|+++-+..
T Consensus 53 ~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 53 YIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred hCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4455 4455467778889999999999999999999999999999997654
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=36.28 E-value=1e+02 Score=24.56 Aligned_cols=24 Identities=4% Similarity=-0.071 Sum_probs=18.5
Q ss_pred chhhHHHHHHHHHHHhhccccccc
Q psy13326 75 NVFGMMLAICGVLAYNKVSTYTGC 98 (143)
Q Consensus 75 ~~iG~~lal~G~~lYs~~k~~~~~ 98 (143)
-+.|..+.++|..+|-+.+++.++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 456888899999999887766554
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=28.83 E-value=31 Score=19.21 Aligned_cols=25 Identities=0% Similarity=0.028 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhccccccchhhhcc
Q psy13326 80 MLAICGVLAYNKVSTYTGCARKTLT 104 (143)
Q Consensus 80 ~lal~G~~lYs~~k~~~~~~~~k~~ 104 (143)
.+.+.+++++-..+-++|++++.+.
T Consensus 9 ~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 9 LVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444455544445555555554443
No 5
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=11.06 E-value=80 Score=19.89 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhccccc
Q psy13326 81 LAICGVLAYNKVSTYT 96 (143)
Q Consensus 81 lal~G~~lYs~~k~~~ 96 (143)
-.++|..+|...|+++
T Consensus 41 ~~figl~~Y~~~r~~~ 56 (61)
T 2h3o_A 41 AIFIGLTIYAIQRKRQ 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3445999999988664
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=10.08 E-value=6.6e+02 Score=22.30 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=20.3
Q ss_pred hHHHhhhhhhccCCcccccchhhHHHHHH
Q psy13326 56 RIFVIAVSLLALGNPVTGTNVFGMMLAIC 84 (143)
Q Consensus 56 ~i~~ivls~~ifg~~ls~~~~iG~~lal~ 84 (143)
.++..+..+.++|-+++...+.|+.+++.
T Consensus 308 ~i~~~~~~l~l~g~~l~l~~i~glil~iG 336 (741)
T 3aqp_A 308 TSALILGLLSGLGATLTLPGIAGLVLTLG 336 (741)
T ss_dssp HHHHHHHHHHHHCCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 44444555666888999998888776653
No 7
>1l2w_I Outer membrane virulence protein YOPE; chaperone and virulence protein; 2.00A {Yersinia pseudotuberculosis} SCOP: d.198.1.1
Probab=9.70 E-value=59 Score=20.36 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=16.0
Q ss_pred HHhccChhhHhhhhhhhhHH
Q psy13326 39 VMSLVTSLTYAVASASKRIF 58 (143)
Q Consensus 39 ~i~~tSaLT~sV~g~lK~i~ 58 (143)
+|.+.|++.++|+|-..+.+
T Consensus 43 iierlssvahsvigfiqrmf 62 (69)
T 1l2w_I 43 IIERLSSVAHSVIGFIQRMF 62 (69)
T ss_dssp CEEECSSCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999877654
No 8
>2vpz_C Hypothetical membrane spanning protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_C* 2vpw_C* 2vpy_C*
Probab=9.15 E-value=6.2e+02 Score=19.08 Aligned_cols=76 Identities=16% Similarity=0.001 Sum_probs=0.0
Q ss_pred CccccCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCccc--ccchh
Q psy13326 1 MKEAHGNSQFSSDSSTKVIFLLCLDGMLSWLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVT--GTNVF 77 (143)
Q Consensus 1 ~~~a~g~~~~~~~~~~~~~~~l~lsg~~af~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls--~~~~i 77 (143)
|+|++|.+.+...|..+...++++.|+.+-..-++...-+..-....--....+=-+..-.+..++ |+|.. ..+..
T Consensus 1 ~~~v~~~~~~~~~Wg~~i~~y~f~~g~aaG~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~l~~-grP~r~~~~~~~ 78 (253)
T 2vpz_C 1 MAEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEARRYTLYALMLIALDLFILWA-ESPARFRFTHIW 78 (253)
T ss_dssp -CEEESCCCCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHT-TCTTTTTTCGGG
T ss_pred CeeeeCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
No 9
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=7.73 E-value=5.9e+02 Score=21.99 Aligned_cols=54 Identities=19% Similarity=0.461 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhh-HHHHHHHHHH
Q psy13326 30 WLQNILAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFG-MMLAICGVLA 88 (143)
Q Consensus 30 f~~N~s~f~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG-~~lal~G~~l 88 (143)
+++-+=+..+-+..++++.+++..+=-.+.+. ++-|+++..++| ++++++|.+.
T Consensus 428 LflklES~aasGvAaaVALgifs~tl~AfSli-----lG~P~taIGIaGiILmAvVgAlI 482 (505)
T 3few_X 428 LMLEVESWVLSGIASAVALGVFSATLGAYALS-----LGAPAIAVGIVGILLAAVVGALL 482 (505)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH-----CCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-----hcCchhHHHHHHHHHHHHHHHHh
No 10
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=7.16 E-value=6.6e+02 Score=22.98 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHH-----HHH
Q psy13326 17 KVIFLLCLDGMLSWLQNILAF----SVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAIC-----GVL 87 (143)
Q Consensus 17 ~~~~~l~lsg~~af~~N~s~f----~~i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~-----G~~ 87 (143)
.....+.+..++-|++=...| ..+-...++-++++|++ .++.++|.+++....+|+.+.+. +++
T Consensus 878 ~~~~~~~~al~li~l~L~~~f~S~~~~l~il~~ip~~~~g~~-------~~l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~ 950 (1054)
T 3ne5_A 878 KLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGI-------WLLWWMGFHLSVATGTGFIALAGVAAEFGVV 950 (1054)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTCCHHHHHHHHTTSHHHHHHHH-------HHHHHHTCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH-------HHHHHHCCCccHHHHHHHHHHHHHHHhhhhh
Q ss_pred HHhhccccccchhh
Q psy13326 88 AYNKVSTYTGCARK 101 (143)
Q Consensus 88 lYs~~k~~~~~~~~ 101 (143)
++.+.+...++.++
T Consensus 951 lv~~~~~~~~~~~~ 964 (1054)
T 3ne5_A 951 MLMYLRHAIEAVPS 964 (1054)
T ss_dssp HHHHHHHHTTSTHH
T ss_pred HHHHHHHHHHhhhh
Done!