Query psy13326
Match_columns 143
No_of_seqs 116 out of 1026
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 16:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13326.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13326hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 32.9 6.9 0.0005 24.5 1.0 25 78-102 27-51 (91)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 20.4 28 0.0021 17.0 1.8 18 76-93 2-19 (27)
3 d1n1ea1 a.100.1.6 (A:198-357) 15.8 38 0.0028 22.6 2.3 23 44-66 2-24 (160)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 15.7 1.2E+02 0.0086 20.5 5.1 53 40-92 60-112 (199)
5 d1iwga8 f.35.1.1 (A:513-566,A: 15.5 1.7E+02 0.012 20.0 6.7 33 60-92 98-130 (222)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 14.1 40 0.0029 20.8 1.9 23 76-98 36-58 (100)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 10.8 2.5E+02 0.018 19.4 6.9 15 83-97 422-436 (447)
8 d2axtj1 f.23.32.1 (J:7-40) Pho 9.7 69 0.005 16.5 1.5 11 80-90 15-25 (34)
9 d1znfa_ g.37.1.1 (A:) XFIN, th 9.6 21 0.0015 17.2 -0.6 8 127-134 17-24 (26)
10 d1l2wi_ d.198.1.1 (I:) YopE ch 9.4 29 0.0021 19.7 -0.2 19 39-57 38-56 (57)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=32.89 E-value=6.9 Score=24.48 Aligned_cols=25 Identities=0% Similarity=-0.257 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHhhccccccchhhh
Q psy13326 78 GMMLAICGVLAYNKVSTYTGCARKT 102 (143)
Q Consensus 78 G~~lal~G~~lYs~~k~~~~~~~~k 102 (143)
.+.+.+.|.+.|...|+|+++.+++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~~~~ 51 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNKDAK 51 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTTTCS
T ss_pred HHHHHHHHHHHhhheeeeccCCccC
Confidence 3455677889999999988765433
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.37 E-value=28 Score=16.99 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHhhcc
Q psy13326 76 VFGMMLAICGVLAYNKVS 93 (143)
Q Consensus 76 ~iG~~lal~G~~lYs~~k 93 (143)
.+|..++-+|.++|.-.+
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357777777777776544
No 3
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=15.83 E-value=38 Score=22.65 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.0
Q ss_pred ChhhHhhhhhhhhHHHhhhhhhc
Q psy13326 44 TSLTYAVASASKRIFVIAVSLLA 66 (143)
Q Consensus 44 SaLT~sV~g~lK~i~~ivls~~i 66 (143)
.....-++|++|+|+.|..|++-
T Consensus 2 D~~GvE~~galKNi~Aia~Gi~~ 24 (160)
T d1n1ea1 2 DTVGCEVASAVKNVLAIGSGVAN 24 (160)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999888764
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.69 E-value=1.2e+02 Score=20.48 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=36.3
Q ss_pred HhccChhhHhhhhhhhhHHHhhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 40 MSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 40 i~~tSaLT~sV~g~lK~i~~ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+..-+.....+...=-++.....+.+++-+++.....+..+.+....-|+..
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~i~ 112 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIV 112 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccHHH
Confidence 34344444444555555666667778889999999999888888887766533
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.49 E-value=1.7e+02 Score=19.99 Aligned_cols=33 Identities=9% Similarity=-0.096 Sum_probs=23.9
Q ss_pred hhhhhhccCCcccccchhhHHHHHHHHHHHhhc
Q psy13326 60 IAVSLLALGNPVTGTNVFGMMLAICGVLAYNKV 92 (143)
Q Consensus 60 ivls~~ifg~~ls~~~~iG~~lal~G~~lYs~~ 92 (143)
.+.+..+++.+++....+|+.+.+....-|...
T Consensus 98 ~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~ 130 (222)
T d1iwga8 98 ALLAATFRGLTNDVYFQVGLLTTIGLSAKNAIL 130 (222)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhhhhcccccchhhhhhhHHHH
Confidence 445667788899999989888876666555533
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.12 E-value=40 Score=20.77 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHhhccccccc
Q psy13326 76 VFGMMLAICGVLAYNKVSTYTGC 98 (143)
Q Consensus 76 ~iG~~lal~G~~lYs~~k~~~~~ 98 (143)
...+.+.+.|.+.|...|++.++
T Consensus 36 ~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 36 IAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHhhhhhccC
Confidence 34566667788889988887664
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.84 E-value=2.5e+02 Score=19.36 Aligned_cols=15 Identities=7% Similarity=-0.077 Sum_probs=6.0
Q ss_pred HHHHHHHhhcccccc
Q psy13326 83 ICGVLAYNKVSTYTG 97 (143)
Q Consensus 83 l~G~~lYs~~k~~~~ 97 (143)
+..++++-....++|
T Consensus 422 ~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 422 LAVILLIVVMIGEKR 436 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc
Confidence 333344444433333
No 8
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.75 E-value=69 Score=16.47 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=8.2
Q ss_pred HHHHHHHHHHh
Q psy13326 80 MLAICGVLAYN 90 (143)
Q Consensus 80 ~lal~G~~lYs 90 (143)
++.++|+++|.
T Consensus 15 vi~~vG~FfYG 25 (34)
T d2axtj1 15 VIVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred hHhheeeeeee
Confidence 46778888885
No 9
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=9.60 E-value=21 Score=17.24 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=4.9
Q ss_pred ccceeeee
Q psy13326 127 SEKSKVQK 134 (143)
Q Consensus 127 ~~~~~~~~ 134 (143)
.||+|+|+
T Consensus 17 srhqrvhk 24 (26)
T d1znfa_ 17 SRHQRVHK 24 (26)
T ss_dssp HHHGGGTC
T ss_pred HHHHHhhc
Confidence 46666665
No 10
>d1l2wi_ d.198.1.1 (I:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}
Probab=9.37 E-value=29 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.3
Q ss_pred HHhccChhhHhhhhhhhhH
Q psy13326 39 VMSLVTSLTYAVASASKRI 57 (143)
Q Consensus 39 ~i~~tSaLT~sV~g~lK~i 57 (143)
++.+.|++.+++++-.|+.
T Consensus 38 i~e~lss~ahs~i~fi~rm 56 (57)
T d1l2wi_ 38 IIERLSSVAHSVIGFIQRM 56 (57)
T ss_dssp CEEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567889999999888875
Done!