RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13326
         (143 letters)



>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance,
           transporter, homodimer, dual topology, transport
           protein; NMR {Escherichia coli}
          Length = 137

 Score = 32.4 bits (74), Expect = 0.021
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 35  LAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVST 94
           LA ++  + T + YA+ S    + +  +S    G  +    + GMML   GVL  N +S 
Sbjct: 47  LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106

Query: 95  YTG 97
            T 
Sbjct: 107 STP 109


>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug
           resistance transporter, SMR, antiport, inner membrane,
           transmembrane; HET: P4P; 3.80A {Escherichia coli K12}
           PDB: 3b61_A 3b62_A*
          Length = 110

 Score = 31.9 bits (73), Expect = 0.025
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 35  LAFSVMSLVTSLTYAVASASKRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVST 94
           LA ++  + T + YA+ S    + +  +S    G  +    + GMML   GVL  N +S 
Sbjct: 47  LAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLSR 106

Query: 95  YTG 97
            T 
Sbjct: 107 STP 109


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.6
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 10/35 (28%)

Query: 110 HHFQQGTVGH----FP----NFGFISEKSKVQKTT 136
           HH +          F     +F F+  + K++  +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDS 511


>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
           transport, cysteine uptake; 2.00A {Campylobacter jejuni}
           SCOP: c.94.1.1
          Length = 292

 Score = 25.0 bits (55), Expect = 9.1
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 55  KRIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGCARKTLTMAQGRHHFQQ 114
           K +   A + L L             LA    +A             +L   +     + 
Sbjct: 2   KYLLPTAAAGLLL-------------LAAQPAMAMASGGNSDSKTLNSLDKIKQNGVVRI 48

Query: 115 GTVGHFPNFGFISEKSKVQ 133
           G  G  P FG++ EK   Q
Sbjct: 49  GVFGDKPPFGYVDEKGNNQ 67


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,982,175
Number of extensions: 103575
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 8
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)