RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13326
         (143 letters)



>d1nt2b_ a.183.1.1 (B:) Nop5p {Archaeon Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 256

 Score = 27.9 bits (62), Expect = 0.41
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 14/86 (16%)

Query: 56  RIFVIAVSLLALGNPVTGTNVFGMMLAICGVLAYNKVSTYTGC------ARKTLTMAQGR 109
            +  IA ++  L     G  V   +L   G +   ++            A K+L   +  
Sbjct: 134 VMEKIAPNMTEL----VGAKVAAKLLERAGSME--RLVRLPASKIQVIGAEKSLY--KAF 185

Query: 110 HHFQQGTVGHFPNFGFISEKSKVQKT 135
              ++G     P  G I     ++  
Sbjct: 186 ARMKKGKKAKIPKHGIIFLHPFIRTL 211


>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits
          {Rhodoblastus acidophilus [TaxId: 1074]}
          Length = 40

 Score = 22.1 bits (47), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 71 VTGTNVFGMMLAICGVLAY 89
          + GT VF ++ AI   LA+
Sbjct: 17 IDGTRVFLVIAAIAHFLAF 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,596
Number of extensions: 16912
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 7
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.8 bits)