BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13327
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z1Z0|USO1_MOUSE General vesicular transport factor p115 OS=Mus musculus GN=Uso1
PE=1 SV=2
Length = 959
Score = 179 bits (454), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 110/145 (75%)
Query: 8 ESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVP 67
E GWSAQ+ +N+ +L+++R LV+P NP SSCQ + G+L LC +LMA G+P
Sbjct: 267 EENSGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIP 326
Query: 68 ACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127
A ILTETINTV+E+IR NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VL
Sbjct: 327 ADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVL 386
Query: 128 YCFLCYLYRNENNQAKIIATLLPSA 152
YCF C+LY+NE Q +I+ATLLPS
Sbjct: 387 YCFQCFLYKNEKGQGEIVATLLPST 411
>sp|P41542|USO1_RAT General vesicular transport factor p115 OS=Rattus norvegicus
GN=Uso1 PE=1 SV=1
Length = 959
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/141 (58%), Positives = 109/141 (77%)
Query: 12 GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
GWSAQ+ +N+ +L+++R LV+P NP SSCQ + G+L LC +LMA G+PA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGIPADIL 330
Query: 72 TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
TETINTV+E+IR NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390
Query: 132 CYLYRNENNQAKIIATLLPSA 152
C+LY+NE Q +I+ATLLPS
Sbjct: 391 CFLYKNEKGQGEIVATLLPST 411
>sp|P41541|USO1_BOVIN General vesicular transport factor p115 OS=Bos taurus GN=USO1 PE=1
SV=1
Length = 961
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 109/141 (77%)
Query: 12 GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
GWSAQ+ +N+ +L+++R LV+P NP SSCQ + G+L LC +LMA GVPA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330
Query: 72 TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
TETINTV+E+IR NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390
Query: 132 CYLYRNENNQAKIIATLLPSA 152
C+LY+N+ Q +I++TLLPS
Sbjct: 391 CFLYKNQKGQGEIVSTLLPST 411
>sp|O60763|USO1_HUMAN General vesicular transport factor p115 OS=Homo sapiens GN=USO1
PE=1 SV=2
Length = 962
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 109/141 (77%)
Query: 12 GWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACIL 71
GWSAQ+ +N+ +L+++R LV+P NP SSCQ + G+L LC +LMA GVPA IL
Sbjct: 271 GWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330
Query: 72 TETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131
TETINTV+E+IR NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LRC+VLYCF
Sbjct: 331 TETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390
Query: 132 CYLYRNENNQAKIIATLLPSA 152
C+LY+N+ Q +I++TLLPS
Sbjct: 391 CFLYKNQKGQGEIVSTLLPST 411
>sp|P52217|GRDB_CLOLI Glycine reductase complex component B subunit gamma OS=Clostridium
litorale GN=grdB PE=3 SV=2
Length = 436
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 27/61 (44%), Gaps = 15/61 (24%)
Query: 33 TPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINT--------VAEIIRS 84
T GN V+SS QF + LMAAGV A ILT T T V EI RS
Sbjct: 315 TTGNGTAVLSSKQFAKE-------FTQELMAAGVDAVILTSTUGTCTRCGATMVKEIERS 367
Query: 85 N 85
Sbjct: 368 G 368
>sp|A1AX01|HEM1_RUTMC Glutamyl-tRNA reductase OS=Ruthia magnifica subsp. Calyptogena
magnifica GN=hemA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 22 LALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEI 81
+A+L V LV P +V F ++ +L NL G+ ACI+ T N V
Sbjct: 4 IAILSVNHQLV----PVEVREKVAFT--PDKLIQALNNLHHIDGIDACIILSTCNRVEIY 57
Query: 82 IRSNHENQEH-FANVYAPSDPPRQAIV 107
+ SNH+N E +N A + ++ I+
Sbjct: 58 VASNHKNSEELLSNYLAKTHNIKRDII 84
>sp|Q96BN8|F105B_HUMAN Protein FAM105B OS=Homo sapiens GN=FAM105B PE=1 SV=3
Length = 352
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 33 TPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHF 92
T +P Q++ + L G G L + M +L + ++ R + N E F
Sbjct: 265 TSNDPGQLLRNH---LNQVGHTGGLEQVEM------FLLAYAVRHTIQVYRLSKYNTEEF 315
Query: 93 ANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR 123
VY P+DPP+ VV L++ ++ + P+R
Sbjct: 316 ITVY-PTDPPKDWPVVTLIAEDDRHYNIPVR 345
>sp|Q21M54|RL2_SACD2 50S ribosomal protein L2 OS=Saccharophagus degradans (strain 2-40 /
ATCC 43961 / DSM 17024) GN=rplB PE=3 SV=1
Length = 275
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 32 VTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNH 86
+ PG AQ+ S +Q+ G C L + +G IL+E T+ E+ S H
Sbjct: 146 MKPGKGAQIARSAGTSVQLVAREGQYCTLRLRSGEMRKILSECRATLGEVSNSEH 200
>sp|Q9GKR7|IQCG_MACFA IQ domain-containing protein G OS=Macaca fascicularis GN=IQCG PE=2
SV=1
Length = 443
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 74 TINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSY 120
T N++ + + EN+ HF +V A + R+ I+ L ++N K+ +
Sbjct: 191 TYNSLLQALSKERENKMHFYDVIAREEKGRKQIISLQKQLINVKKEW 237
>sp|Q9H095|IQCG_HUMAN IQ domain-containing protein G OS=Homo sapiens GN=IQCG PE=2 SV=1
Length = 443
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 74 TINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCY 133
T N++ + + EN+ HF ++ A + R+ I+ L ++N K+ + ++
Sbjct: 191 TYNSLLQALSKERENKMHFYDIIAREEKGRKQIISLQKQLINVKKEWQFEVQSQNEYIAN 250
Query: 134 L 134
L
Sbjct: 251 L 251
>sp|B0F9L4|GOGC6_ARATH Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2
Length = 914
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 13 WSAQRESNILALLKVIRSLVT------PGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGV 66
++ Q+ N+L+ L+ I L+ PG + +++ ++Q L + L+ GV
Sbjct: 274 FTQQKTVNLLSALETINMLIMGRADTEPGKDSNKLANRTVLVQ-----KKLLDYLLMLGV 328
Query: 67 -----PACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP 121
P + T + ++I + +N++ A+ D + + ++ ++ Q S
Sbjct: 329 ESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALNSILRIILQTSSIQ 388
Query: 122 LRCSVLYCFLCYLYRNENNQAKIIATLLP 150
+ Y F + +N Q + +TL+P
Sbjct: 389 EFVAADYVFKTFCEKNTEGQTMLASTLIP 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,321,787
Number of Sequences: 539616
Number of extensions: 1777705
Number of successful extensions: 4276
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4267
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)