Query psy13327
Match_columns 154
No_of_seqs 102 out of 119
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 16:39:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0946|consensus 100.0 1.1E-45 2.3E-50 342.5 14.9 147 7-153 270-417 (970)
2 PF04869 Uso1_p115_head: Uso1 99.8 1.2E-20 2.5E-25 162.0 6.3 70 84-153 1-85 (312)
3 KOG2160|consensus 96.4 0.044 9.6E-07 48.4 10.7 90 46-146 118-207 (342)
4 cd00020 ARM Armadillo/beta-cat 95.3 0.28 6.1E-06 33.8 9.2 87 48-146 3-89 (120)
5 KOG2160|consensus 95.2 0.23 5E-06 43.9 10.2 56 40-96 154-209 (342)
6 PF04826 Arm_2: Armadillo-like 93.3 0.88 1.9E-05 38.3 9.4 133 10-148 6-158 (254)
7 PF13513 HEAT_EZ: HEAT-like re 92.2 0.51 1.1E-05 29.6 5.2 52 69-131 2-53 (55)
8 PF09759 Atx10homo_assoc: Spin 91.8 1.5 3.3E-05 32.4 7.9 73 70-152 2-75 (102)
9 PF01365 RYDR_ITPR: RIH domain 91.1 0.54 1.2E-05 37.5 5.4 55 40-94 31-101 (207)
10 PF10363 DUF2435: Protein of u 90.3 1.4 3E-05 31.7 6.4 63 65-139 14-76 (92)
11 PF04869 Uso1_p115_head: Uso1 90.2 1.2 2.5E-05 38.8 7.0 95 51-146 33-137 (312)
12 PF00514 Arm: Armadillo/beta-c 87.4 2.9 6.2E-05 24.8 5.4 39 42-82 2-40 (41)
13 PF09759 Atx10homo_assoc: Spin 87.0 2.5 5.4E-05 31.2 6.0 59 41-99 17-75 (102)
14 PF10508 Proteasom_PSMB: Prote 85.9 5.5 0.00012 36.3 8.8 94 50-147 331-431 (503)
15 PF08045 CDC14: Cell division 83.1 7.8 0.00017 33.0 8.0 55 42-97 123-177 (257)
16 PF12460 MMS19_C: RNAPII trans 81.0 6.7 0.00015 34.6 7.2 101 41-151 308-410 (415)
17 PF08064 UME: UME (NUC010) dom 78.9 21 0.00046 25.9 8.1 63 64-139 25-87 (107)
18 PF08454 RIH_assoc: RyR and IP 76.5 19 0.0004 26.7 7.3 78 15-97 4-97 (109)
19 PF02985 HEAT: HEAT repeat; I 76.1 6.3 0.00014 22.2 3.7 26 109-135 4-29 (31)
20 cd00020 ARM Armadillo/beta-cat 70.6 30 0.00065 23.4 9.1 81 42-134 39-119 (120)
21 PF12463 DUF3689: Protein of u 69.4 17 0.00037 31.7 6.4 55 43-97 132-187 (303)
22 PF11698 V-ATPase_H_C: V-ATPas 62.8 38 0.00082 25.7 6.5 86 41-137 21-117 (119)
23 PF13251 DUF4042: Domain of un 61.3 11 0.00023 30.5 3.4 68 69-137 1-71 (182)
24 KOG0166|consensus 60.6 93 0.002 29.3 9.8 84 47-143 316-401 (514)
25 smart00802 UME Domain in UVSB 59.3 69 0.0015 23.6 8.2 61 66-139 27-87 (107)
26 PF02671 PAH: Paired amphipath 57.7 14 0.0003 22.7 2.8 23 72-94 22-44 (47)
27 PF12783 Sec7_N: Guanine nucle 56.1 88 0.0019 23.8 10.5 120 7-138 25-149 (168)
28 PF10165 Ric8: Guanine nucleot 55.3 1.4E+02 0.003 27.0 9.8 67 25-98 2-76 (446)
29 smart00185 ARM Armadillo/beta- 54.5 37 0.0008 19.0 4.5 36 44-81 4-39 (41)
30 PF12348 CLASP_N: CLASP N term 53.3 61 0.0013 25.4 6.6 41 110-151 182-222 (228)
31 PF12717 Cnd1: non-SMC mitotic 52.9 55 0.0012 25.4 6.1 71 68-139 2-97 (178)
32 PF12719 Cnd3: Nuclear condens 37.8 82 0.0018 26.4 5.3 90 60-150 71-200 (298)
33 PF06012 DUF908: Domain of Unk 35.3 1.1E+02 0.0024 26.3 5.8 58 41-98 252-312 (329)
34 COG5064 SRP1 Karyopherin (impo 34.4 71 0.0015 29.4 4.6 50 36-85 183-232 (526)
35 PF08167 RIX1: rRNA processing 34.4 2.2E+02 0.0047 22.0 8.9 105 19-139 40-147 (165)
36 PF11864 DUF3384: Domain of un 32.1 2.6E+02 0.0056 25.2 7.9 72 66-150 2-77 (464)
37 PLN03200 cellulose synthase-in 32.1 7.5E+02 0.016 27.6 12.1 82 50-143 607-688 (2102)
38 PF08454 RIH_assoc: RyR and IP 31.4 97 0.0021 22.8 4.2 42 19-62 65-106 (109)
39 PF10508 Proteasom_PSMB: Prote 28.5 3E+02 0.0065 25.1 7.7 91 42-144 233-327 (503)
40 PF03810 IBN_N: Importin-beta 27.7 1.3E+02 0.0029 19.2 4.1 37 51-87 13-49 (77)
41 KOG1967|consensus 26.4 4.8E+02 0.01 26.7 9.0 131 11-151 785-954 (1030)
42 KOG1293|consensus 25.7 1.3E+02 0.0027 29.3 4.8 105 27-137 156-263 (678)
43 PLN03200 cellulose synthase-in 24.5 5.5E+02 0.012 28.5 9.6 93 42-146 394-486 (2102)
44 KOG1248|consensus 24.5 1.5E+02 0.0033 30.6 5.3 81 59-140 143-258 (1176)
45 PF12719 Cnd3: Nuclear condens 24.4 3.9E+02 0.0084 22.3 7.2 28 52-80 26-53 (298)
46 PF01347 Vitellogenin_N: Lipop 22.8 1.6E+02 0.0036 26.8 5.0 19 112-130 566-584 (618)
47 PF14914 LRRC37AB_C: LRRC37A/B 21.7 1.5E+02 0.0032 23.7 3.9 35 25-59 33-67 (154)
48 PF01602 Adaptin_N: Adaptin N 21.4 3.1E+02 0.0068 24.0 6.3 53 70-139 95-147 (526)
49 KOG2274|consensus 20.7 1.5E+02 0.0032 30.1 4.4 67 57-135 454-520 (1005)
50 PRK09687 putative lyase; Provi 20.4 5.2E+02 0.011 21.7 8.2 43 105-148 159-201 (280)
51 PF10257 RAI16-like: Retinoic 20.2 1.9E+02 0.0041 25.3 4.6 38 46-84 3-40 (353)
No 1
>KOG0946|consensus
Probab=100.00 E-value=1.1e-45 Score=342.46 Aligned_cols=147 Identities=54% Similarity=0.870 Sum_probs=143.7
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCH
Q psy13327 7 CESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNH 86 (154)
Q Consensus 7 ~~e~~~W~~Qk~~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~ 86 (154)
|+|+++|++||+.|++.+|+|||.||+|||++..|++||++|.+++++..||.++|++++|++|++++++|+|++||||.
T Consensus 270 d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~ 349 (970)
T KOG0946|consen 270 DGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNA 349 (970)
T ss_pred CcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhcccCCCCC-ChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHhcCCCC
Q psy13327 87 ENQEHFANVYAPSDP-PRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPSAT 153 (154)
Q Consensus 87 ~nQe~fa~~~vps~p-~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~~~ 153 (154)
.||++|+++++|+.| |+|+++|+||+|.||+|+|++|||+.|||+||+|+|.+||.+|++|++|+++
T Consensus 350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~ 417 (970)
T KOG0946|consen 350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSST 417 (970)
T ss_pred HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhc
Confidence 999999999999876 8999999999999999999999999999999999999999999999999984
No 2
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=99.82 E-value=1.2e-20 Score=162.01 Aligned_cols=70 Identities=47% Similarity=0.851 Sum_probs=57.9
Q ss_pred cCHHhHHHhhcccCC-------------CCCChHHHHHHHHHHhhcC--CcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327 84 SNHENQEHFANVYAP-------------SDPPRQAIVVLLMSMVNQK--QSYPLRCSVLYCFLCYLYRNENNQAKIIATL 148 (154)
Q Consensus 84 gn~~nQe~fa~~~vp-------------s~p~~p~i~vLLl~~~~s~--~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl 148 (154)
||+.|||+||+++|| +++++|++.+||..|++++ |+|++|+||+|||||||++|+++|++|++|+
T Consensus 1 gN~~~Q~~Fa~~~vp~~dp~~~~~~~~~~~~~~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~ 80 (312)
T PF04869_consen 1 GNATNQEEFAQIDVPYFDPSLPGQVQAPSDPPVPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTL 80 (312)
T ss_dssp --HHHHHHHHC-EE-------------SSSS-EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTT
T ss_pred CCHHHHHHHhcceeecccccccccccCCCCCCccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999994 3567899999999998877 9999999999999999999999999999999
Q ss_pred cCCCC
Q psy13327 149 LPSAT 153 (154)
Q Consensus 149 lp~~~ 153 (154)
+|+++
T Consensus 81 i~~~~ 85 (312)
T PF04869_consen 81 IPSYA 85 (312)
T ss_dssp SSTT-
T ss_pred hccCC
Confidence 99873
No 3
>KOG2160|consensus
Probab=96.40 E-value=0.044 Score=48.37 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHH
Q psy13327 46 FVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCS 125 (154)
Q Consensus 46 ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~A 125 (154)
.-|.+.|.+..++. .-...+..||..|..++|-+.+.||..|+.+=.... .++ |+.++.+.++...|..
T Consensus 118 ndl~~~ggl~~ll~--~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~-----L~~----Ll~~ls~~~~~~~r~k 186 (342)
T KOG2160|consen 118 NDLISLGGLVPLLG--YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGA-----LSK----LLKILSSDDPNTVRTK 186 (342)
T ss_pred HhHhhccCHHHHHH--HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc-----HHH----HHHHHccCCCchHHHH
Confidence 34678888888887 446889999999999999999999999998755442 122 3444446778999999
Q ss_pred HHHHHHHHhccChhhHHHHHH
Q psy13327 126 VLYCFLCYLYRNENNQAKIIA 146 (154)
Q Consensus 126 a~~c~kay~~~N~~~q~~~i~ 146 (154)
|+|-+-|-+-+|+.||..|..
T Consensus 187 aL~AissLIRn~~~g~~~fl~ 207 (342)
T KOG2160|consen 187 ALFAISSLIRNNKPGQDEFLK 207 (342)
T ss_pred HHHHHHHHHhcCcHHHHHHHh
Confidence 999999999999999999865
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.33 E-value=0.28 Score=33.79 Aligned_cols=87 Identities=15% Similarity=0.211 Sum_probs=65.6
Q ss_pred HHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHH
Q psy13327 48 LQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVL 127 (154)
Q Consensus 48 l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~ 127 (154)
+.+.|++..++++..... .++|..|+.+++.+..+++...+.|-+..+ -|. |+.++++. ..++|..|+
T Consensus 3 ~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~-----i~~----l~~~l~~~-~~~v~~~a~ 70 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD--ENVQREAAWALSNLSAGNNDNIQAVVEAGG-----LPA----LVQLLKSE-DEEVVKAAL 70 (120)
T ss_pred HHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-----hHH----HHHHHhCC-CHHHHHHHH
Confidence 568899999999887665 789999999999999998888888865332 122 33333333 468889999
Q ss_pred HHHHHHhccChhhHHHHHH
Q psy13327 128 YCFLCYLYRNENNQAKIIA 146 (154)
Q Consensus 128 ~c~kay~~~N~~~q~~~i~ 146 (154)
.|+.....+.+..+..++.
T Consensus 71 ~~L~~l~~~~~~~~~~~~~ 89 (120)
T cd00020 71 WALRNLAAGPEDNKLIVLE 89 (120)
T ss_pred HHHHHHccCcHHHHHHHHH
Confidence 9999998888766555543
No 5
>KOG2160|consensus
Probab=95.21 E-value=0.23 Score=43.94 Aligned_cols=56 Identities=21% Similarity=0.316 Sum_probs=51.2
Q ss_pred cchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhccc
Q psy13327 40 VVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVY 96 (154)
Q Consensus 40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~ 96 (154)
|-|..|..+...|-+..|+.+.= +..|..+|++||.++.-+||.|+.-|+.|-.+.
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 66899999999999999988765 999999999999999999999999999997764
No 6
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.28 E-value=0.88 Score=38.30 Aligned_cols=133 Identities=22% Similarity=0.300 Sum_probs=85.4
Q ss_pred cccchHHHHHHHHHHHHHHH-------HHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHH
Q psy13327 10 EEGWSAQRESNILALLKVIR-------SLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEII 82 (154)
Q Consensus 10 ~~~W~~Qk~~Ni~~~L~ivr-------llV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlI 82 (154)
...|+.|...++.++|+.-+ .+..=+| ...-+.||..+.+.|.+..+..+.=.+ ...+|..|+.+++++
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nl- 81 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNL- 81 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhc-
Confidence 34599999999999998432 2333333 336789999999999999999887665 458999999999987
Q ss_pred hcCHHhHHHhhcccCC-------CCC----ChHHHHHHHHHH--hhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327 83 RSNHENQEHFANVYAP-------SDP----PRQAIVVLLMSM--VNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATL 148 (154)
Q Consensus 83 rgn~~nQe~fa~~~vp-------s~p----~~p~i~vLLl~~--~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl 148 (154)
.++..||+.-. .-++ +.+ .+-+-.-+|.+| .++.|.. ++-..-+++.-...+|...|...+..|
T Consensus 82 s~~~en~~~Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 82 SVNDENQEQIK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred CCChhhHHHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh-HHhhHHHHHHHHHcCChHHHHHHHHHH
Confidence 77888887653 2333 222 122233335555 2233333 233344455555566666666555544
No 7
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.23 E-value=0.51 Score=29.59 Aligned_cols=52 Identities=6% Similarity=0.171 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHH
Q psy13327 69 CILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131 (154)
Q Consensus 69 ~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~k 131 (154)
+||..|+.++|.+..+.+...+.+ .|.++-.|+.++++.++ ++|.+|++++.
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~----------~~~~~~~L~~~L~d~~~-~VR~~A~~aLg 53 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPY----------LPELLPALIPLLQDDDD-SVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHH----------HHHHHHHHHHHTTSSSH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHH----------HHHHHHHHHHHHcCCCH-HHHHHHHHHHh
Confidence 689999999999776666655443 35677778888877767 99999999985
No 8
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=91.77 E-value=1.5 Score=32.39 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHH-hhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327 70 ILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSM-VNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATL 148 (154)
Q Consensus 70 Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~-~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl 148 (154)
.|..-+..+|-+-..|+.+|+.+....- +-.||-.. ..+..|| +|=-|..|++--+++|++.|.-+. .|
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~G--------i~liL~~c~iD~~nP~-irEwai~aiRnL~e~n~eNQ~~I~-~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGG--------IPLILSCCNIDDHNPF-IREWAIFAIRNLCEGNPENQEFIA-QL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCC--------hHHHHHhcCCCcccHH-HHHHHHHHHHHHHhCCHHHHHHHH-hc
Confidence 4778899999999999999999987654 22233222 2244555 899999999999999999997554 44
Q ss_pred cCCC
Q psy13327 149 LPSA 152 (154)
Q Consensus 149 lp~~ 152 (154)
-|+.
T Consensus 72 ~~~~ 75 (102)
T PF09759_consen 72 EPQG 75 (102)
T ss_pred cccC
Confidence 4443
No 9
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=91.11 E-value=0.54 Score=37.49 Aligned_cols=55 Identities=20% Similarity=0.129 Sum_probs=44.2
Q ss_pred cchHHHHHHHHhcHHHHHHHHhcCcCCC----------------hhhHHHHHHHHHHHHhcCHHhHHHhhc
Q psy13327 40 VVSSCQFVLQVSGILGSLCNLLMAAGVP----------------ACILTETINTVAEIIRSNHENQEHFAN 94 (154)
Q Consensus 40 ~t~~nQ~~l~q~gll~~ll~Laf~~~~p----------------~~Ir~eAL~t~adlIrgn~~nQe~fa~ 94 (154)
..+.+|+.|..-|+++.++++.-.+... ..|-..+..-+.-..|||+.||.+|++
T Consensus 31 ~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~ 101 (207)
T PF01365_consen 31 PNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK 101 (207)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3469999999999999988887664333 356778888899999999999999886
No 10
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.34 E-value=1.4 Score=31.70 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred CCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327 65 GVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN 139 (154)
Q Consensus 65 ~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~ 139 (154)
.-..|||+.+|..+..+|+.+. +... ..|.+..+++..+.+..+| +=.+|..|+-+-...+|+
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-----~~~~------~~~~il~l~l~~L~d~Dsy-VYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-----EPVI------DIPKILDLFLSQLKDEDSY-VYLNAIKGLAALADRHPD 76 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-----cchh------hHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHHHHChH
Confidence 4557799999999999999987 1111 3478888888888877776 468899999988888887
No 11
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=90.20 E-value=1.2 Score=38.80 Aligned_cols=95 Identities=15% Similarity=0.226 Sum_probs=63.0
Q ss_pred hcHHHHHHHHhcCcC--CChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCC------hHHHHHHHHHHhh--cCCcc
Q psy13327 51 SGILGSLCNLLMAAG--VPACILTETINTVAEIIRSNHENQEHFANVYAPSDPP------RQAIVVLLMSMVN--QKQSY 120 (154)
Q Consensus 51 ~gll~~ll~Laf~~~--~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~------~p~i~vLLl~~~~--s~~~f 120 (154)
..++..|+++++... -+.++|+.|+.+.--...+|+..|..|.+-.+|.... ..-+.--|++.-. +..++
T Consensus 33 ~pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy 112 (312)
T PF04869_consen 33 VPVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPY 112 (312)
T ss_dssp EEHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HH
T ss_pred ccHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHH
Confidence 347889999999976 7999999999999999999999999999999984321 1122222444211 33555
Q ss_pred hhHHHHHHHHHHHhccChhhHHHHHH
Q psy13327 121 PLRCSVLYCFLCYLYRNENNQAKIIA 146 (154)
Q Consensus 121 ~lR~Aa~~c~kay~~~N~~~q~~~i~ 146 (154)
..=+ |+..|--.+.+|++.|....+
T Consensus 113 ~~wf-Aa~il~hll~dn~~~Ke~al~ 137 (312)
T PF04869_consen 113 RCWF-AAVILMHLLRDNPEAKEQALR 137 (312)
T ss_dssp HHHH-HHHHHHHHHTT-HHHHHHHTT
T ss_pred HHHH-HHHHHHHHHhcCHHHHHHHHc
Confidence 5434 556677778888888876643
No 12
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=87.36 E-value=2.9 Score=24.80 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHH
Q psy13327 42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEII 82 (154)
Q Consensus 42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlI 82 (154)
+.|.+.+.++|.+..|+++.- .-+..|+.+|.-+++.+-
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHh
Confidence 568899999999999999987 778899999999988763
No 13
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=87.03 E-value=2.5 Score=31.23 Aligned_cols=59 Identities=17% Similarity=0.096 Sum_probs=51.0
Q ss_pred chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCC
Q psy13327 41 VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPS 99 (154)
Q Consensus 41 t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps 99 (154)
-+.+|..+.+.|-+..+|+-----.-.+-+|=-|+.++=-+..||+.||+..+++....
T Consensus 17 ~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~~~~ 75 (102)
T PF09759_consen 17 NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLEPQG 75 (102)
T ss_pred CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhccccC
Confidence 57899999999988888887655555566999999999999999999999999998753
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=85.87 E-value=5.5 Score=36.34 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=59.2
Q ss_pred HhcHHHHHHHHhcCc--CCChhhHHHHHHHHHHHHhcCHH--hHHHhhcccC--CCCCChHHHHHHHHHHhhcCCc-chh
Q psy13327 50 VSGILGSLCNLLMAA--GVPACILTETINTVAEIIRSNHE--NQEHFANVYA--PSDPPRQAIVVLLMSMVNQKQS-YPL 122 (154)
Q Consensus 50 q~gll~~ll~Laf~~--~~p~~Ir~eAL~t~adlIrgn~~--nQe~fa~~~v--ps~p~~p~i~vLLl~~~~s~~~-f~l 122 (154)
+.+-+..+++-++.. ..+.++|..+|.+.+.++..... ..+.++-..- -.-...|... +++++. +|| -|+
T Consensus 331 ~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~-~l~~~~--~qPF~el 407 (503)
T PF10508_consen 331 QGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN-LLMSLL--KQPFPEL 407 (503)
T ss_pred cchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH-HHHHHh--cCCchHH
Confidence 345888899988884 77889999999999999754443 1111100000 0001112222 444444 788 689
Q ss_pred HHHHHHHHHHHhccChhhHHHHHHH
Q psy13327 123 RCSVLYCFLCYLYRNENNQAKIIAT 147 (154)
Q Consensus 123 R~Aa~~c~kay~~~N~~~q~~~i~T 147 (154)
|+||...+++-+. ++-|+..+.++
T Consensus 408 r~a~~~~l~~l~~-~~Wg~~~i~~~ 431 (503)
T PF10508_consen 408 RCAAYRLLQALAA-QPWGQREICSS 431 (503)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHhC
Confidence 9999999998654 56777776653
No 15
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=83.10 E-value=7.8 Score=33.04 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=49.4
Q ss_pred hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccC
Q psy13327 42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYA 97 (154)
Q Consensus 42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~v 97 (154)
+..|+.|.+.+-++.++++. ++.-+..|...+|.|+--+...++.|+..|-...=
T Consensus 123 p~Sr~lF~r~~~m~lll~LL-~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~G 177 (257)
T PF08045_consen 123 PPSRKLFHREQNMELLLDLL-SPSNPPAIQSACLDTLVCILLDSPENQRDFEELNG 177 (257)
T ss_pred chHHHHHhhhhhHHHHHHHh-ccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCC
Confidence 56788999999999999998 66778999999999999999999999999988764
No 16
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.01 E-value=6.7 Score=34.61 Aligned_cols=101 Identities=12% Similarity=0.152 Sum_probs=74.9
Q ss_pred chHHHHHHHHhcHHHHHHHHhcCc--CCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCC
Q psy13327 41 VSSCQFVLQVSGILGSLCNLLMAA--GVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQ 118 (154)
Q Consensus 41 t~~nQ~~l~q~gll~~ll~Laf~~--~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~ 118 (154)
.++|-+-||+-.+...++...+.. .....+|+.-|.+++-++++=|.. +.. +..|.+..||+.-+ +-.
T Consensus 308 ~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~------vl~---~~l~~LlPLLlqsL-~~~ 377 (415)
T PF12460_consen 308 NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKS------VLL---PELPTLLPLLLQSL-SLP 377 (415)
T ss_pred ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHH------HHH---HHHHHHHHHHHHHh-CCC
Confidence 468888899999888888777773 556668999999999998864421 111 12366777755433 222
Q ss_pred cchhHHHHHHHHHHHhccChhhHHHHHHHhcCC
Q psy13327 119 SYPLRCSVLYCFLCYLYRNENNQAKIIATLLPS 151 (154)
Q Consensus 119 ~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~ 151 (154)
.=++|.+++.+++.++.++++.-..=++||+|.
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~ 410 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAPELISEHLSSLIPR 410 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 336999999999999999999999999999873
No 17
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=78.91 E-value=21 Score=25.91 Aligned_cols=63 Identities=19% Similarity=0.353 Sum_probs=47.9
Q ss_pred cCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327 64 AGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN 139 (154)
Q Consensus 64 ~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~ 139 (154)
...|..-|-.+|+.++++|+-....=. +.+|.+-..|.+.+... ++|..|+.|..+|+..=++
T Consensus 25 ~~~~~~ek~~~l~si~~lI~~~~~~i~----------~~~pQI~a~L~sal~~~---~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 25 GKKPIPEKKRALRSIEELIKLGGSHIS----------SARPQIMACLQSALEIP---ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHH----------HHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHHCCH
Confidence 468999999999999999993222211 13678888888766444 7899999999999876555
No 18
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=76.54 E-value=19 Score=26.69 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHH-------hcHHHHHHHHhcC--------cCCChhhHHHHHHHHH
Q psy13327 15 AQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQV-------SGILGSLCNLLMA--------AGVPACILTETINTVA 79 (154)
Q Consensus 15 ~Qk~~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q-------~gll~~ll~Laf~--------~~~p~~Ir~eAL~t~a 79 (154)
.|+...+...|..+++|-++.|. .-|.-|++ -.+...+..+.-. ..-...+-..++.|+.
T Consensus 4 ~~~~~~~~~ilr~LQLlCEghn~-----~lQnylR~Q~~~~~s~nlV~~~~~ll~~l~~~~~~~~~~~~~~~~q~~~tL~ 78 (109)
T PF08454_consen 4 SQDMEIIQRILRFLQLLCEGHNL-----DLQNYLRQQPNNKNSYNLVSETVDLLDSLQEFGKDINSDNIELIIQCFDTLT 78 (109)
T ss_pred HHHHHHHHHHHHHHHHHHCcCCH-----HHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57888999999999999998863 23333321 1233333333211 2334456788999999
Q ss_pred HHHhc-CHHhHHHhhcccC
Q psy13327 80 EIIRS-NHENQEHFANVYA 97 (154)
Q Consensus 80 dlIrg-n~~nQe~fa~~~v 97 (154)
|+|-| +..||..+++-.+
T Consensus 79 E~iQGPC~eNQ~~l~~s~~ 97 (109)
T PF08454_consen 79 EFIQGPCIENQIALANSKF 97 (109)
T ss_pred HHHcCCCHHhHHHHHHccH
Confidence 99999 9999999986554
No 19
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.07 E-value=6.3 Score=22.19 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=19.2
Q ss_pred HHHHHhhcCCcchhHHHHHHHHHHHhc
Q psy13327 109 LLMSMVNQKQSYPLRCSVLYCFLCYLY 135 (154)
Q Consensus 109 LLl~~~~s~~~f~lR~Aa~~c~kay~~ 135 (154)
.++.+.++. .-++|.||.+|+.....
T Consensus 4 ~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 4 ILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 356666655 57899999999988754
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=70.62 E-value=30 Score=23.38 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=59.0
Q ss_pred hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327 42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP 121 (154)
Q Consensus 42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~ 121 (154)
+.+...+.+.|++..++.+.-.+ ...++-.|+.+++.+-++.+...+.+-+-.+ +..|...+++. ..+
T Consensus 39 ~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~---------l~~l~~~l~~~-~~~ 106 (120)
T cd00020 39 NDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKLIVLEAGG---------VPKLVNLLDSS-NED 106 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHHHHHHHCCC---------hHHHHHHHhcC-CHH
Confidence 56667778889999999987653 5799999999999999998877777664332 22334444444 457
Q ss_pred hHHHHHHHHHHHh
Q psy13327 122 LRCSVLYCFLCYL 134 (154)
Q Consensus 122 lR~Aa~~c~kay~ 134 (154)
.|-.|+.+|...+
T Consensus 107 ~~~~a~~~l~~l~ 119 (120)
T cd00020 107 IQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887543
No 21
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=69.35 E-value=17 Score=31.70 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=48.7
Q ss_pred HHHHHHHHhcHHHHHHHHhcCc-CCChhhHHHHHHHHHHHHhcCHHhHHHhhcccC
Q psy13327 43 SCQFVLQVSGILGSLCNLLMAA-GVPACILTETINTVAEIIRSNHENQEHFANVYA 97 (154)
Q Consensus 43 ~nQ~~l~q~gll~~ll~Laf~~-~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~v 97 (154)
+=|.-+...|++++++.-.+++ .....+.--..--+||+|+||..+=..|-+...
T Consensus 132 ~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~f~~l~~~l~ 187 (303)
T PF12463_consen 132 ADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDAFQRLNKYLN 187 (303)
T ss_pred HHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHhc
Confidence 7899999999999999999986 455689999999999999999998888877666
No 22
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=62.84 E-value=38 Score=25.72 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=57.2
Q ss_pred chHHH-HHHHHh----------cHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHH
Q psy13327 41 VSSCQ-FVLQVS----------GILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVL 109 (154)
Q Consensus 41 t~~nQ-~~l~q~----------gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vL 109 (154)
+|.|. ..||+. .++..|+++.-.+. ...+.+.|.+-+|+.+|-+|.-.....+.-+ =..
T Consensus 21 SP~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~---------K~~ 90 (119)
T PF11698_consen 21 SPVHKSEKFWRENADKFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGA---------KER 90 (119)
T ss_dssp -GGGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSH---------HHH
T ss_pred cCCCCCccHHHHHHHHHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcCh---------HHH
Confidence 44555 666644 38888999986666 7888999999999999987665444332222 122
Q ss_pred HHHHhhcCCcchhHHHHHHHHHHHhccC
Q psy13327 110 LMSMVNQKQSYPLRCSVLYCFLCYLYRN 137 (154)
Q Consensus 110 Ll~~~~s~~~f~lR~Aa~~c~kay~~~N 137 (154)
+|.+.+.. .=++|.-|+.|+|..+.+|
T Consensus 91 vM~Lm~h~-d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 91 VMELMNHE-DPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHTS-S-SHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence 45555443 4588999999999988765
No 23
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=61.28 E-value=11 Score=30.46 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHhc-CHHhHHHhhcccCCCC--CChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccC
Q psy13327 69 CILTETINTVAEIIRS-NHENQEHFANVYAPSD--PPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRN 137 (154)
Q Consensus 69 ~Ir~eAL~t~adlIrg-n~~nQe~fa~~~vps~--p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N 137 (154)
.||-.||.++.++++. ++..=-.+=..-.|+. .+.+.-..|+-.+..+. .-..|.||+..+.+.+++-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGS 71 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHcc
Confidence 4899999999999999 7666555556666765 12223334444445444 5689999999999998883
No 24
>KOG0166|consensus
Probab=60.56 E-value=93 Score=29.25 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=58.2
Q ss_pred HHHHhcHHHHHHHHhcCcCCChh-hHHHHHHHHHHHHhcCH-HhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHH
Q psy13327 47 VLQVSGILGSLCNLLMAAGVPAC-ILTETINTVAEIIRSNH-ENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRC 124 (154)
Q Consensus 47 ~l~q~gll~~ll~Laf~~~~p~~-Ir~eAL~t~adlIrgn~-~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~ 124 (154)
++..+|.|.++..+... .|.+ ||.||--|++.+..||. ..|..+..= ++-.|+.++ +..+|++|-
T Consensus 316 ~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~----------l~p~Li~~l-~~~ef~~rK 382 (514)
T KOG0166|consen 316 VVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDAN----------LIPVLINLL-QTAEFDIRK 382 (514)
T ss_pred HHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcc----------cHHHHHHHH-hccchHHHH
Confidence 56789999999998873 3333 99999999999999998 555554431 222244433 344699999
Q ss_pred HHHHHHHHHhccChhhHHH
Q psy13327 125 SVLYCFLCYLYRNENNQAK 143 (154)
Q Consensus 125 Aa~~c~kay~~~N~~~q~~ 143 (154)
.|+.-+.-...+=..-|..
T Consensus 383 EAawaIsN~ts~g~~~qi~ 401 (514)
T KOG0166|consen 383 EAAWAISNLTSSGTPEQIK 401 (514)
T ss_pred HHHHHHHhhcccCCHHHHH
Confidence 9998887655554444433
No 25
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=59.33 E-value=69 Score=23.58 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327 66 VPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN 139 (154)
Q Consensus 66 ~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~ 139 (154)
.|..=|-.+|+.+++||+.....- ...+|.+-+.|.+-+... ++|..|+.|..+|...=++
T Consensus 27 ~~~~ek~~~i~ai~~lI~~~g~~i----------~~a~pQI~acL~saL~~~---eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 27 KPYNEKKRALRSIGFLIKLMGKHI----------SSALPQIMACLQSALEIP---ELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhCCH
Confidence 455559999999999999544311 124688888888766544 5899999999998876554
No 26
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=57.70 E-value=14 Score=22.72 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhcCHHhHHHhhc
Q psy13327 72 TETINTVAEIIRSNHENQEHFAN 94 (154)
Q Consensus 72 ~eAL~t~adlIrgn~~nQe~fa~ 94 (154)
.+....++++++|++.+.+.|..
T Consensus 22 ~~v~~~v~~Ll~~hpdLl~~F~~ 44 (47)
T PF02671_consen 22 SEVIEEVSELLRGHPDLLEEFNR 44 (47)
T ss_dssp HHHHHHHHHHTTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHh
Confidence 45677899999999999999975
No 27
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=56.06 E-value=88 Score=23.80 Aligned_cols=120 Identities=8% Similarity=0.056 Sum_probs=77.1
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhcCCCCCcc---chHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHh
Q psy13327 7 CESEEGWSAQRESNILALLKVIRSLVTPGNPAQV---VSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIR 83 (154)
Q Consensus 7 ~~e~~~W~~Qk~~Ni~~~L~ivrllV~p~n~~~~---t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIr 83 (154)
+++.+.|.......-...|+++...++-+.+.-. ....=..+.+..+...+++.+.+.. .+|-..++..+.-+++
T Consensus 25 ~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~--~~i~~~slri~~~l~~ 102 (168)
T PF12783_consen 25 PGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD--FPIFSRSLRIFLTLLS 102 (168)
T ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHH
Confidence 4445678777777788899999988887632112 1223445678889999999998855 7777788888888885
Q ss_pred cCHHhHHHhhcccCCCCCChHHHHHH-HHHHhhcCC-cchhHHHHHHHHHHHhccCh
Q psy13327 84 SNHENQEHFANVYAPSDPPRQAIVVL-LMSMVNQKQ-SYPLRCSVLYCFLCYLYRNE 138 (154)
Q Consensus 84 gn~~nQe~fa~~~vps~p~~p~i~vL-Ll~~~~s~~-~f~lR~Aa~~c~kay~~~N~ 138 (154)
.... ..... -...... +..++.++. ++.-|..++++++.++.+-.
T Consensus 103 ~~~~-------~Lk~e---le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 103 RFRS-------HLKLE---LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHH-------HHHHH---HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 4322 11100 0112222 222444443 68899999999999996543
No 28
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=55.32 E-value=1.4e+02 Score=27.03 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHh--------cCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhccc
Q psy13327 25 LKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLL--------MAAGVPACILTETINTVAEIIRSNHENQEHFANVY 96 (154)
Q Consensus 25 L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~La--------f~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~ 96 (154)
|+.+|+|-- + +.+-..+....-+..|+++| ....-..++.-|||.|++.++--++..|+.|.+..
T Consensus 2 L~~LRiLsR-d------~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~ 74 (446)
T PF10165_consen 2 LETLRILSR-D------PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG 74 (446)
T ss_pred HHHHHHHcc-C------cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 566666533 2 11223334444566788888 34455788999999999999999999999999877
Q ss_pred CC
Q psy13327 97 AP 98 (154)
Q Consensus 97 vp 98 (154)
..
T Consensus 75 ~~ 76 (446)
T PF10165_consen 75 LA 76 (446)
T ss_pred cH
Confidence 63
No 29
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=54.48 E-value=37 Score=18.98 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHH
Q psy13327 44 CQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEI 81 (154)
Q Consensus 44 nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adl 81 (154)
|...+.+.|.+..++++. . .-..+|+..|+.++..+
T Consensus 4 ~~~~i~~~g~i~~L~~ll-~-~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 4 QKQAVVDAGGLPALVELL-K-SEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHCCCHHHHHHHH-c-CCCHHHHHHHHHHHHHH
Confidence 677889999999999984 4 33688899888887765
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=53.35 E-value=61 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHhcCC
Q psy13327 110 LMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATLLPS 151 (154)
Q Consensus 110 Ll~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp~ 151 (154)
+..++++. .-++|-+|-.||..|...-++--..+++.|=|+
T Consensus 182 l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~ 222 (228)
T PF12348_consen 182 LVKLLSDA-DPEVREAARECLWALYSHFPERAESILSMLDPN 222 (228)
T ss_dssp HHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH----------
T ss_pred HHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhhccchhcchhc
Confidence 44445444 568999999999999999888888888776664
No 31
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=52.92 E-value=55 Score=25.37 Aligned_cols=71 Identities=17% Similarity=0.197 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHHHhcCHHhHHHhhcccCC-----CCCCh-HHHHHH--HH----------------HHhhcCCcchhH
Q psy13327 68 ACILTETINTVAEIIRSNHENQEHFANVYAP-----SDPPR-QAIVVL--LM----------------SMVNQKQSYPLR 123 (154)
Q Consensus 68 ~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vp-----s~p~~-p~i~vL--Ll----------------~~~~s~~~f~lR 123 (154)
..||+-++.++||+..-.+..=|.+-..... ++..| -++.+| |+ ..+.+ ..=++|
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D-~~~~Ir 80 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD-ENPEIR 80 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC-CCHHHH
Confidence 4578888888888887777766655444332 11122 233333 11 11111 124689
Q ss_pred HHHHHHHHHHhcc-Chh
Q psy13327 124 CSVLYCFLCYLYR-NEN 139 (154)
Q Consensus 124 ~Aa~~c~kay~~~-N~~ 139 (154)
..|.+||..+..+ ++.
T Consensus 81 ~~A~~~~~e~~~~~~~~ 97 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPN 97 (178)
T ss_pred HHHHHHHHHHHHhccch
Confidence 9999999999888 544
No 32
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=37.76 E-value=82 Score=26.42 Aligned_cols=90 Identities=12% Similarity=0.249 Sum_probs=55.9
Q ss_pred HhcCcCCChhhHHHHHHHHHHHHhcCHHh--HHHhh-----------cccC----CCC--------------------CC
Q psy13327 60 LLMAAGVPACILTETINTVAEIIRSNHEN--QEHFA-----------NVYA----PSD--------------------PP 102 (154)
Q Consensus 60 Laf~~~~p~~Ir~eAL~t~adlIrgn~~n--Qe~fa-----------~~~v----ps~--------------------p~ 102 (154)
-.+..+ +.+||..||.++-|++.-+..- ...-. ++-. ... .+
T Consensus 71 ~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 71 QALQKD-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 344444 9999999999999998654321 11111 0100 011 12
Q ss_pred hHHHHH-HHHHHhhcC--CcchhHHHHHHHHHHHhccChhhHHHHHHHhcC
Q psy13327 103 RQAIVV-LLMSMVNQK--QSYPLRCSVLYCFLCYLYRNENNQAKIIATLLP 150 (154)
Q Consensus 103 ~p~i~v-LLl~~~~s~--~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tllp 150 (154)
.|.++. |++.+.+.. ....+|-.=.|+|+.|.+.+++-|..+.+..+|
T Consensus 150 ~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~ 200 (298)
T PF12719_consen 150 PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLP 200 (298)
T ss_pred HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 143333 344444322 235889999999999999999999998887765
No 33
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=35.34 E-value=1.1e+02 Score=26.34 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=47.5
Q ss_pred chHHHHHHHHhc--HHHHHHHHhcC-cCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCC
Q psy13327 41 VSSCQFVLQVSG--ILGSLCNLLMA-AGVPACILTETINTVAEIIRSNHENQEHFANVYAP 98 (154)
Q Consensus 41 t~~nQ~~l~q~g--ll~~ll~Laf~-~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vp 98 (154)
.+..+..+.+.+ +++.|.++.=- ..+|.+||+.||.++.-+++......+-.+.+-+.
T Consensus 252 ~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~ 312 (329)
T PF06012_consen 252 ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGAN 312 (329)
T ss_pred CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCC
Confidence 355667777777 99999998655 59999999999999999999888888877766664
No 34
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.41 E-value=71 Score=29.35 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=42.3
Q ss_pred CCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcC
Q psy13327 36 NPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSN 85 (154)
Q Consensus 36 n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn 85 (154)
|-..-.+.|..-..|||.|+.+|.|..++....++.--|--|+..+-||-
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 33334678999999999999999999988777888888888999999985
No 35
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=34.35 E-value=2.2e+02 Score=21.97 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHH---hcCHHhHHHhhcc
Q psy13327 19 SNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEII---RSNHENQEHFANV 95 (154)
Q Consensus 19 ~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlI---rgn~~nQe~fa~~ 95 (154)
.+-|..+.+++.++.-+.. ..-...-.-|=.+++.. +...-|..++..|+.|++++. +|-++...+++.
T Consensus 40 ~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~-----L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~t- 111 (165)
T PF08167_consen 40 YSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSI-----LEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIAT- 111 (165)
T ss_pred hhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhh-
Confidence 3456777777777766521 22222222232223222 244777888888888888775 666666555432
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327 96 YAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN 139 (154)
Q Consensus 96 ~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~ 139 (154)
|--|+++-.++.+..+ -.....++.+++..+..||-
T Consensus 112 -----p~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 112 -----PNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT 147 (165)
T ss_pred -----ccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence 2346677777777654 23346778888887777764
No 36
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.13 E-value=2.6e+02 Score=25.22 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=53.5
Q ss_pred CChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh----hH
Q psy13327 66 VPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN----NQ 141 (154)
Q Consensus 66 ~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~----~q 141 (154)
-|..-|.+|+..++|.|+..+. .+-+.+...--+|+...+|-+.|.|+++.+++...+..+ .|
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~-------------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R 68 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPL-------------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR 68 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCc-------------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH
Confidence 3678899999999999987632 123555555677888888889999999999988877754 56
Q ss_pred HHHHHHhcC
Q psy13327 142 AKIIATLLP 150 (154)
Q Consensus 142 ~~~i~Tllp 150 (154)
..|-.++..
T Consensus 69 ~~fF~~I~~ 77 (464)
T PF11864_consen 69 AEFFRDISD 77 (464)
T ss_pred HHHHHHHhc
Confidence 666666643
No 37
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=32.09 E-value=7.5e+02 Score=27.55 Aligned_cols=82 Identities=12% Similarity=0.120 Sum_probs=61.3
Q ss_pred HhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHH
Q psy13327 50 VSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYC 129 (154)
Q Consensus 50 q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c 129 (154)
.+|-+..|.+|.-+. ...++-+|..+++.+..|++.+.+.+..... -|.++. ++ +...++.|-.|+.+
T Consensus 607 ~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~aga-----IpPLV~----LL-ss~~~~v~keAA~A 674 (2102)
T PLN03200 607 ANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEI-----INPCIK----LL-TNNTEAVATQSARA 674 (2102)
T ss_pred ccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCC-----HHHHHH----HH-hcCChHHHHHHHHH
Confidence 457788888888765 5799999999999999999998776554433 233333 33 24578999999999
Q ss_pred HHHHhccChhhHHH
Q psy13327 130 FLCYLYRNENNQAK 143 (154)
Q Consensus 130 ~kay~~~N~~~q~~ 143 (154)
+-+++.+..+.|..
T Consensus 675 L~nL~~~~~~~q~~ 688 (2102)
T PLN03200 675 LAALSRSIKENRKV 688 (2102)
T ss_pred HHHHHhCCCHHHHH
Confidence 99999777766643
No 38
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=31.40 E-value=97 Score=22.82 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhc
Q psy13327 19 SNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLM 62 (154)
Q Consensus 19 ~Ni~~~L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf 62 (154)
.|+..+.+++..|.+=- +.--..||.++.++++++.+..+..
T Consensus 65 ~~~~~~~q~~~tL~E~i--QGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 65 DNIELIIQCFDTLTEFI--QGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHH--cCCCHHhHHHHHHccHHHHHHHHHh
Confidence 44555556666655532 1126899999999999999988753
No 39
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=28.53 E-value=3e+02 Score=25.14 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=58.8
Q ss_pred hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCC----ChHHHHHHHHHHhhcC
Q psy13327 42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDP----PRQAIVVLLMSMVNQK 117 (154)
Q Consensus 42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p----~~p~i~vLLl~~~~s~ 117 (154)
+.+-+.|.+.|++..++++........ |.-+++..|-| ..|+.+..-+++ ..|.+.-.|..+..+
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~--------~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s- 301 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRM--------KFFGNLARVSPQEVLELYPAFLERLFSMLES- 301 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCC--cccchhhhhHH--------HHHHHHHhcChHHHHHHHHHHHHHHHHHhCC-
Confidence 444577888999999999998864444 66667777666 566666553221 125554445555544
Q ss_pred CcchhHHHHHHHHHHHhccChhhHHHH
Q psy13327 118 QSYPLRCSVLYCFLCYLYRNENNQAKI 144 (154)
Q Consensus 118 ~~f~lR~Aa~~c~kay~~~N~~~q~~~ 144 (154)
+.-..|.+|..++-... .+.+|+..+
T Consensus 302 ~d~~~~~~A~dtlg~ig-st~~G~~~L 327 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIG-STVEGKQLL 327 (503)
T ss_pred CChhHHHHHHHHHHHHh-CCHHHHHHH
Confidence 35567888888887665 455666555
No 40
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=27.67 E-value=1.3e+02 Score=19.25 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=33.4
Q ss_pred hcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHH
Q psy13327 51 SGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHE 87 (154)
Q Consensus 51 ~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~ 87 (154)
-|....++++..+...+..+|--|..++=-.|+.+-.
T Consensus 13 p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~ 49 (77)
T PF03810_consen 13 PGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWS 49 (77)
T ss_dssp TCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGG
T ss_pred hhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4899999999999999999999999999999988833
No 41
>KOG1967|consensus
Probab=26.40 E-value=4.8e+02 Score=26.75 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=85.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHhcCCCCCccc-------------------------------------hHHHHHHHHhcH
Q psy13327 11 EGWSAQRESNILALLKVIRSLVTPGNPAQVV-------------------------------------SSCQFVLQVSGI 53 (154)
Q Consensus 11 ~~W~~Qk~~Ni~~~L~ivrllV~p~n~~~~t-------------------------------------~~nQ~~l~q~gl 53 (154)
.+|-+=+.+++-.+.-+..-||..+++-.+- .+--+.||+...
T Consensus 785 ~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf 864 (1030)
T KOG1967|consen 785 CGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF 864 (1030)
T ss_pred cCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH
Confidence 4688888999999999999999988741110 111113444444
Q ss_pred HHHHHHHhcC--cCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHH
Q psy13327 54 LGSLCNLLMA--AGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFL 131 (154)
Q Consensus 54 l~~ll~Laf~--~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~k 131 (154)
.-.+.....+ +.+|-.+|+-=+...+-+|..=|. | +. .|.-|.+..+|+-- .+--..+.|..+..||+
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~-----vl---lp~~~~LlPLLLq~-Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-Q-----VL---LPQFPMLLPLLLQA-LSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-H-----hh---ccchhhHHHHHHHh-cCCCccchhhhHhhhhh
Confidence 3333333333 256777777777777766652221 1 11 12335566665442 24456789999999999
Q ss_pred HHhccChhhHHHHHHHhcCC
Q psy13327 132 CYLYRNENNQAKIIATLLPS 151 (154)
Q Consensus 132 ay~~~N~~~q~~~i~Tllp~ 151 (154)
-.+..++-.++.=++|++|+
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~ 954 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPY 954 (1030)
T ss_pred HHHHhccccchHHHhHHHHH
Confidence 99999999999999999985
No 42
>KOG1293|consensus
Probab=25.66 E-value=1.3e+02 Score=29.33 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=63.0
Q ss_pred HHHHHhcCCCCCccchHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHH---HHHhcCHHhHHHhhcccCCCCCCh
Q psy13327 27 VIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVA---EIIRSNHENQEHFANVYAPSDPPR 103 (154)
Q Consensus 27 ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~a---dlIrgn~~nQe~fa~~~vps~p~~ 103 (154)
+.|+.+.--+-..+|..||..+..+|+++.+=-+.+ ......|..||.+.+ -+++.|+.-=-.+=.+.. +....
T Consensus 156 ~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~--~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~-d~~v~ 232 (678)
T KOG1293|consen 156 ISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLM--YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLK-DKGVN 232 (678)
T ss_pred hhhhhhhhhccccccchhhheeccccchhhHHHHHH--hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHh-ccccc
Confidence 345555543334478899999999999987765554 456788999999998 666655432111111111 11111
Q ss_pred HHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccC
Q psy13327 104 QAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRN 137 (154)
Q Consensus 104 p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N 137 (154)
+.+.+. -+. ..-.+..|.-++.|+.-|+.++
T Consensus 233 ~r~~v~--rL~-k~~~~s~~l~sl~cl~~~~~~s 263 (678)
T KOG1293|consen 233 IRCVVT--RLL-KDPDFSERLRSLECLVPYLRKS 263 (678)
T ss_pred hhhhhh--hhh-hCCCccHHHHHHHHHHHHHhcc
Confidence 111111 111 2235788888999999888877
No 43
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=24.55 E-value=5.5e+02 Score=28.55 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=64.7
Q ss_pred hHHHHHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcch
Q psy13327 42 SSCQFVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYP 121 (154)
Q Consensus 42 ~~nQ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~ 121 (154)
+.+++.|.+.|....|..|.-..+ .++++.|..++..+-.|+..+++...+... -|.++-+|. + +.-.
T Consensus 394 ~~l~~~L~~~daik~LV~LL~~~~--~evQ~~Av~aL~~L~~~~~e~~~aIi~~gg-----Ip~LV~LL~----s-~s~~ 461 (2102)
T PLN03200 394 AYLSRKLNHAEAKKVLVGLITMAT--ADVQEELIRALSSLCCGKGGLWEALGGREG-----VQLLISLLG----L-SSEQ 461 (2102)
T ss_pred hHHHHHHHhccchhhhhhhhccCC--HHHHHHHHHHHHHHhCCCHHHHHHHHHcCc-----HHHHHHHHc----C-CCHH
Confidence 345677777787777777776554 589999999999999999998888876654 233333332 2 2346
Q ss_pred hHHHHHHHHHHHhccChhhHHHHHH
Q psy13327 122 LRCSVLYCFLCYLYRNENNQAKIIA 146 (154)
Q Consensus 122 lR~Aa~~c~kay~~~N~~~q~~~i~ 146 (154)
.|..|++.+.....+|++.+..+++
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777777777777776665553
No 44
>KOG1248|consensus
Probab=24.52 E-value=1.5e+02 Score=30.64 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHhcCcCCChhhHHHHHHHHHHHHhcCH----------------------------HhHHHhhcccCCCC----CChHHH
Q psy13327 59 NLLMAAGVPACILTETINTVAEIIRSNH----------------------------ENQEHFANVYAPSD----PPRQAI 106 (154)
Q Consensus 59 ~Laf~~~~p~~Ir~eAL~t~adlIrgn~----------------------------~nQe~fa~~~vps~----p~~p~i 106 (154)
.++|+-..-..||.+|++.++-++.|.+ .|+..|-.+.+-.+ =|+|-+
T Consensus 143 il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li 222 (1176)
T KOG1248|consen 143 ILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLI 222 (1176)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 3456657777899999999999998543 22222222222111 023333
Q ss_pred HHH---HHHHhhcCCcchhHHHHHHHHHHHhccChhh
Q psy13327 107 VVL---LMSMVNQKQSYPLRCSVLYCFLCYLYRNENN 140 (154)
Q Consensus 107 ~vL---Ll~~~~s~~~f~lR~Aa~~c~kay~~~N~~~ 140 (154)
-.+ ++... ...+--+++.+..||.+.|.+++++
T Consensus 223 ~sl~e~lL~i~-~~s~v~v~~~~~q~l~~lf~~~~~~ 258 (1176)
T KOG1248|consen 223 KSLCEVLLNIT-TESPVLVLLEVLQCLHSLFKKHPTA 258 (1176)
T ss_pred HHHHHHHHhhc-ccchHHHHHHHHHHHHHHHhcCCCc
Confidence 222 22222 1234567899999999999999984
No 45
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=24.41 E-value=3.9e+02 Score=22.32 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.7
Q ss_pred cHHHHHHHHhcCcCCChhhHHHHHHHHHH
Q psy13327 52 GILGSLCNLLMAAGVPACILTETINTVAE 80 (154)
Q Consensus 52 gll~~ll~Laf~~~~p~~Ir~eAL~t~ad 80 (154)
|++..++.=++.+.-+ +||-.|+.+.|=
T Consensus 26 ~ll~~lI~P~v~~~~~-~vR~~al~cLGl 53 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDP-AVRELALKCLGL 53 (298)
T ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 7888899888887777 999999988873
No 46
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=22.81 E-value=1.6e+02 Score=26.82 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHhhcCCcchhHHHHHHHH
Q psy13327 112 SMVNQKQSYPLRCSVLYCF 130 (154)
Q Consensus 112 ~~~~s~~~f~lR~Aa~~c~ 130 (154)
.+.|...+.++|+||...+
T Consensus 566 I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 566 IFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHH-TTS-HHHHHHHHHHH
T ss_pred HhcCCCCChhHHHHHHHHH
Confidence 3455566788899886543
No 47
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=21.74 E-value=1.5e+02 Score=23.65 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCccchHHHHHHHHhcHHHHHHH
Q psy13327 25 LKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCN 59 (154)
Q Consensus 25 L~ivrllV~p~n~~~~t~~nQ~~l~q~gll~~ll~ 59 (154)
=.|||.|=..-+......+|=+.+.++|+|+.|+.
T Consensus 33 ShVirtLkmDCse~~vqlaCAKLISrTgLLMKLLS 67 (154)
T PF14914_consen 33 SHVIRTLKMDCSEPHVQLACAKLISRTGLLMKLLS 67 (154)
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHhHHHHHHH
Confidence 47899997776656678899999999999998874
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=21.41 E-value=3.1e+02 Score=24.03 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChh
Q psy13327 70 ILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNEN 139 (154)
Q Consensus 70 Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~ 139 (154)
+|+-||++++.+. ++..- +.+...+..++.+.++ .+|-+|+.|+-.++...|+
T Consensus 95 ~~~lAL~~l~~i~--~~~~~--------------~~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~~p~ 147 (526)
T PF01602_consen 95 IRGLALRTLSNIR--TPEMA--------------EPLIPDVIKLLSDPSP-YVRKKAALALLKIYRKDPD 147 (526)
T ss_dssp HHHHHHHHHHHH---SHHHH--------------HHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHhhhhhhc--ccchh--------------hHHHHHHHHHhcCCch-HHHHHHHHHHHHHhccCHH
No 49
>KOG2274|consensus
Probab=20.74 E-value=1.5e+02 Score=30.08 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHhcCcCCChhhHHHHHHHHHHHHhcCHHhHHHhhcccCCCCCChHHHHHHHHHHhhcCCcchhHHHHHHHHHHHhc
Q psy13327 57 LCNLLMAAGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLRCSVLYCFLCYLY 135 (154)
Q Consensus 57 ll~Laf~~~~p~~Ir~eAL~t~adlIrgn~~nQe~fa~~~vps~p~~p~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~ 135 (154)
+......+..|.-+. .|+.|++ .|++..+-..+......-..+..+....+=.+|.+|+.-|-.|+.
T Consensus 454 ~~~~l~~~e~P~Ll~-Ra~~~i~-----------~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~ 520 (1005)
T KOG2274|consen 454 IDNGLVYQESPFLLL-RAFLTIS-----------KFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK 520 (1005)
T ss_pred HHhhcccccCHHHHH-HHHHHHH-----------HHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC
Confidence 333344467888777 9999998 788876533222111111122222222344568999999999983
No 50
>PRK09687 putative lyase; Provisional
Probab=20.40 E-value=5.2e+02 Score=21.71 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHhccChhhHHHHHHHh
Q psy13327 105 AIVVLLMSMVNQKQSYPLRCSVLYCFLCYLYRNENNQAKIIATL 148 (154)
Q Consensus 105 ~i~vLLl~~~~s~~~f~lR~Aa~~c~kay~~~N~~~q~~~i~Tl 148 (154)
..+-.|+.++.+..+ ++|.+|.+.+...-+++++....+++.|
T Consensus 159 ~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 159 AAIPLLINLLKDPNG-DVRNWAAFALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 344445666655544 7899988888876555665555555443
No 51
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=20.17 E-value=1.9e+02 Score=25.27 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHhcHHHHHHHHhcCcCCChhhHHHHHHHHHHHHhc
Q psy13327 46 FVLQVSGILGSLCNLLMAAGVPACILTETINTVAEIIRS 84 (154)
Q Consensus 46 ~~l~q~gll~~ll~Laf~~~~p~~Ir~eAL~t~adlIrg 84 (154)
.-+.+++|++.|+++|.. ..|..+|.++|....-+|..
T Consensus 3 Eyll~~~Il~~L~~la~~-d~p~g~r~~~l~f~~~Ll~~ 40 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKA-DYPPGMRQEVLKFFSRLLSQ 40 (353)
T ss_pred HHHHHhChHHHHHHHHcc-cCChHHHHHHHHHHHHHHHh
Confidence 347899999999999998 99999999999999998875
Done!