RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13327
         (154 letters)



>3grl_A General vesicular transport factor P115; vesicle transport,
           membrane trafficking, membrane tethering, fusion, snare,
           RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
           3gq2_A 2w3c_A
          Length = 651

 Score =  142 bits (358), Expect = 2e-40
 Identities = 82/148 (55%), Positives = 110/148 (74%)

Query: 4   LPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMA 63
               +   GWSAQ+ +N+  +L+++R LV+P NP    SSCQ  +   G+L  LC +LMA
Sbjct: 263 FEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322

Query: 64  AGVPACILTETINTVAEIIRSNHENQEHFANVYAPSDPPRQAIVVLLMSMVNQKQSYPLR 123
            GVPA ILTETINTV+E+IR    NQ++FA+V APS+PPR AIVVLLMSMVN++Q + LR
Sbjct: 323 TGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLR 382

Query: 124 CSVLYCFLCYLYRNENNQAKIIATLLPS 151
           C+VLYCF C+LY+N+  Q +I++TLLPS
Sbjct: 383 CAVLYCFQCFLYKNQKGQGEIVSTLLPS 410


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 35.6 bits (81), Expect = 0.005
 Identities = 28/191 (14%), Positives = 56/191 (29%), Gaps = 57/191 (29%)

Query: 2   LHLPECESEEGWSAQRESNILALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLL 61
           L+L  C S E         +L +L+ +   + P   ++   S    L++  I   L  LL
Sbjct: 187 LNLKNCNSPET--------VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 62  MAAGVPACIL-------TETIN---------------TVAEIIRSNH------------- 86
            +     C+L        +  N                V + + +               
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 87  ---ENQEHFANV--YAPSDPPRQAIVV--LLMSMV-NQKQSYPLRCSVLYCFLCYLYRNE 138
              E +          P D PR+ +      +S++    +           +  + + N 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT------WDNWKHVNC 352

Query: 139 NNQAKIIATLL 149
           +    II + L
Sbjct: 353 DKLTTIIESSL 363


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 0.17
 Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 5/25 (20%)

Query: 87  ENQ-----EHFANVYAPSDPPRQAI 106
           E Q     +    +YA    P  AI
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAI 42


>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone
           receptor, abscisic acid, hormone recepto; HET: A8S;
           2.05A {Arabidopsis thaliana}
          Length = 208

 Score = 26.6 bits (58), Expect = 3.1
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 23  ALLKVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTETI 75
            +  V+R    P      + SC         +G   ++ + +G+PA    E +
Sbjct: 68  TVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERL 120


>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon
           disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP}
           PDB: 3ten_A*
          Length = 204

 Score = 25.7 bits (56), Expect = 5.9
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 80  EIIRSNHENQEHFANVYAPSDPPRQAIVVL 109
           E I S  +  E +A       P  + + VL
Sbjct: 4   EYIDSELKRLEDYALRRVKGIPNNRRLWVL 33


>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor,
           A sensor, drought tolerance, plant development; HET:
           A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A*
           3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
          Length = 211

 Score = 25.9 bits (56), Expect = 6.3
 Identities = 10/48 (20%), Positives = 20/48 (41%)

Query: 26  KVIRSLVTPGNPAQVVSSCQFVLQVSGILGSLCNLLMAAGVPACILTE 73
            ++R    P      + SC         +G   ++++ +G+PA   TE
Sbjct: 67  SIVRRFDKPQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTE 114


>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION
           channel, membrane PROT malignant hyperthermia, cardiac
           arrhythmia; 2.50A {Oryctolagus cuniculus}
          Length = 559

 Score = 25.6 bits (55), Expect = 9.3
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 78  VAEIIRSNHENQEHFAN 94
           +A +IR N  N   F+ 
Sbjct: 526 LASLIRGNRANCALFST 542


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,146,756
Number of extensions: 110511
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 9
Length of query: 154
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 69
Effective length of database: 4,328,508
Effective search space: 298667052
Effective search space used: 298667052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)